Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239650 | XP_013462928.1 | 95.519 | 491 | 12 | 1 | 1 | 491 | 1 | 481 | 0.0 | 934 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239650 | sp|Q8GYX3|MP705_ARATH | 53.750 | 480 | 166 | 8 | 16 | 490 | 9 | 437 | 2.11e-145 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239650 | A0A072V6K1 | 95.519 | 491 | 12 | 1 | 1 | 491 | 1 | 481 | 0.0 | 934 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048010 | Msa0239650 | 0.997770 | 7.534629e-249 | -8.615850e-47 |
| Msa0141420 | Msa0239650 | 0.989886 | 4.330323e-180 | -8.615850e-47 |
| Msa0197880 | Msa0239650 | 0.810480 | 1.128648e-50 | -8.615850e-47 |
| Msa0239650 | Msa0277650 | 0.909147 | 7.853639e-82 | -8.615850e-47 |
| Msa0239650 | Msa0317240 | 0.907967 | 2.856354e-81 | -8.615850e-47 |
| Msa0239650 | Msa0527610 | 0.900705 | 5.604162e-78 | -8.615850e-47 |
| Msa0239650 | Msa1117910 | 0.814261 | 1.685489e-51 | -8.615850e-47 |
| Msa0239650 | Msa1447210 | 0.997164 | 6.602633e-238 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239650 | MtrunA17_Chr2g0290411 | 95.519 | 491 | 12 | 1 | 1 | 491 | 1 | 481 | 0.0 | 934 |
| Msa0239650 | MtrunA17_Chr4g0076251 | 65.070 | 501 | 142 | 4 | 6 | 491 | 19 | 501 | 0.0 | 593 |
| Msa0239650 | MtrunA17_Chr8g0391771 | 45.749 | 494 | 226 | 10 | 13 | 491 | 57 | 523 | 1.35e-125 | 379 |
| Msa0239650 | MtrunA17_Chr1g0161371 | 45.473 | 497 | 223 | 10 | 13 | 491 | 52 | 518 | 3.74e-124 | 375 |
| Msa0239650 | MtrunA17_Chr8g0344311 | 46.307 | 501 | 211 | 10 | 13 | 491 | 53 | 517 | 1.57e-122 | 371 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239650 | AT4G17220.1 | 53.750 | 480 | 166 | 8 | 16 | 490 | 9 | 437 | 2.14e-146 | 429 |
| Msa0239650 | AT1G24764.1 | 45.749 | 494 | 226 | 8 | 13 | 490 | 74 | 541 | 5.74e-131 | 394 |
| Msa0239650 | AT1G24764.3 | 45.749 | 494 | 226 | 8 | 13 | 490 | 133 | 600 | 1.88e-129 | 392 |
| Msa0239650 | AT1G68060.1 | 46.761 | 494 | 220 | 11 | 13 | 491 | 66 | 531 | 2.41e-129 | 389 |
| Msa0239650 | AT1G14840.1 | 44.869 | 497 | 224 | 8 | 13 | 491 | 49 | 513 | 1.69e-126 | 381 |
| Msa0239650 | AT2G01750.1 | 44.785 | 489 | 233 | 6 | 13 | 490 | 73 | 535 | 1.23e-125 | 380 |
| Msa0239650 | AT2G01750.2 | 44.785 | 489 | 233 | 6 | 13 | 490 | 73 | 535 | 1.24e-125 | 380 |
| Msa0239650 | AT1G14840.2 | 42.455 | 497 | 221 | 9 | 13 | 491 | 49 | 498 | 1.50e-111 | 342 |
| Msa0239650 | AT1G24764.2 | 46.024 | 415 | 182 | 8 | 93 | 491 | 1 | 389 | 1.54e-108 | 331 |
Find 98 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAGTTTCTTGACTTCT+AGG | 0.102098 | 2_2:-14192983 | None:intergenic |
| TTTCCTTTGGTCTTCTATTT+TGG | 0.106408 | 2_2:-14191779 | None:intergenic |
| TTTCCTTTGGTATCCAATTT+TGG | 0.142874 | 2_2:-14191674 | None:intergenic |
| CTTAGCTTCAGTTGCCCTTA+TGG | 0.199525 | 2_2:-14192654 | None:intergenic |
| ATTCTTTATGAAGAGAAAAT+TGG | 0.212662 | 2_2:+14195120 | Msa0239650:three_prime_UTR |
| GGTAGAACCATATTTCATTT+TGG | 0.221595 | 2_2:-14194350 | None:intergenic |
| TTCCAAAAGCCAAACATAAA+AGG | 0.248082 | 2_2:+14194283 | Msa0239650:CDS |
| ACACTTACCATCACCAAAAT+TGG | 0.257334 | 2_2:+14191661 | Msa0239650:five_prime_UTR |
| TCTTCTAACCATTGCCTAAC+AGG | 0.277147 | 2_2:-14193903 | None:intergenic |
| ATAGAAACTATACACGAAAA+TGG | 0.289286 | 2_2:-14193451 | None:intergenic |
| ATATTCGATTTATCAGCTTT+TGG | 0.300457 | 2_2:-14194178 | None:intergenic |
| AGCATAACCAAAATGAAATA+TGG | 0.322617 | 2_2:+14194343 | Msa0239650:CDS |
| TTTACCAAGAAAGAAGAAAA+TGG | 0.324121 | 2_2:+14191936 | Msa0239650:exon |
| CCTCAAGTTCATGAATTGTT+TGG | 0.350831 | 2_2:-14193586 | None:intergenic |
| TCTACAGATTACAGCACTTC+AGG | 0.391041 | 2_2:+14193253 | Msa0239650:intron |
| GAAAGCACTGATGTGGTCTC+TGG | 0.402489 | 2_2:+14194517 | Msa0239650:CDS |
| GTGATAAGGTCATGCCTGTT+AGG | 0.415652 | 2_2:+14193889 | Msa0239650:CDS |
| TCAGGAAGATAAGAAAGCTT+TGG | 0.418519 | 2_2:+14193271 | Msa0239650:CDS |
| ACAATGGTGGATTGAGAAAC+AGG | 0.418721 | 2_2:+14194218 | Msa0239650:CDS |
| AAAAGGCAACATAGACAGTA+TGG | 0.427289 | 2_2:+14194300 | Msa0239650:CDS |
| TAGCATACTCCATTTGTTGT+TGG | 0.431105 | 2_2:+14191718 | Msa0239650:five_prime_UTR |
| AGATCTCGATCCGTCTCTTC+AGG | 0.431500 | 2_2:-14193403 | None:intergenic |
| ATCTCCAACACAACAACATC+TGG | 0.433211 | 2_2:-14191988 | None:intergenic |
| AAAAGCAGAATCACAATTGA+AGG | 0.437230 | 2_2:+14193992 | Msa0239650:CDS |
| TATGGCTGGGAACCGAAAAC+CGG | 0.449172 | 2_2:+14194318 | Msa0239650:CDS |
| AAGATTACACACAGATCAAA+AGG | 0.452964 | 2_2:+14193058 | Msa0239650:CDS |
| GAGAAATGAAGTAAGTAAGA+TGG | 0.460243 | 2_2:+14192850 | Msa0239650:CDS |
| ATGGTGAAATCAAGGCCATA+AGG | 0.461955 | 2_2:+14192639 | Msa0239650:CDS |
| ACAGGAGGAGAACAAAATCT+TGG | 0.462576 | 2_2:+14193520 | Msa0239650:intron |
| AGAAGGCTTAAAGCAATTCT+CGG | 0.473398 | 2_2:+14194129 | Msa0239650:CDS |
| GAGGAGCTCATCTTATCAAA+TGG | 0.475247 | 2_2:+14193605 | Msa0239650:CDS |
| CGCAACAGTTGCAATTCTGT+TGG | 0.479391 | 2_2:-14193844 | None:intergenic |
| TTTAGAGTCTTCATCAGCAT+TGG | 0.483845 | 2_2:-14194473 | None:intergenic |
| TGGAGATACTGAAAATGCAT+TGG | 0.489587 | 2_2:-14194158 | None:intergenic |
| AAAACACCAACAACAAATGA+TGG | 0.495818 | 2_2:-14191619 | None:intergenic |
| TCTCAGACTCTGTAAGTTAG+TGG | 0.498944 | 2_2:-14195226 | None:intergenic |
| TCACAAAAGTAGAACACCTA+TGG | 0.501557 | 2_2:+14191864 | Msa0239650:five_prime_UTR |
| TAAAAGCCATCATTTGTTGT+TGG | 0.502135 | 2_2:+14191613 | Msa0239650:five_prime_UTR |
| GGCAACATAGACAGTATGGC+TGG | 0.502574 | 2_2:+14194304 | Msa0239650:CDS |
| TTTCCAACGGTAGATCCTCT+TGG | 0.502837 | 2_2:-14194253 | None:intergenic |
| CATTTGCAAAACAAACTCAT+AGG | 0.508565 | 2_2:+14192015 | Msa0239650:CDS |
| CAAACCAGATGTTGTTGTGT+TGG | 0.510088 | 2_2:+14191984 | Msa0239650:CDS |
| ATGGAAAGATGAAAGTGATA+AGG | 0.511209 | 2_2:+14193875 | Msa0239650:CDS |
| CTTTATGAAGAGAAAATTGG+AGG | 0.512076 | 2_2:+14195123 | Msa0239650:three_prime_UTR |
| CAACTGTTGCGGCTAATGAA+TGG | 0.512914 | 2_2:+14193856 | Msa0239650:CDS |
| CTTCTCTGTATGTACAGAGT+TGG | 0.523530 | 2_2:-14195250 | None:intergenic |
| TAAGTGTACTGTTGAGGCTA+AGG | 0.523957 | 2_2:-14191750 | None:intergenic |
| TACATGCCATGGTGAAATCA+AGG | 0.527571 | 2_2:+14192631 | Msa0239650:CDS |
| TGCGAGACTAAGACTTAAAG+AGG | 0.531452 | 2_2:+14192874 | Msa0239650:CDS |
| GGCGTGATGACACTTTCAAA+TGG | 0.532270 | 2_2:-14193095 | None:intergenic |
| AACATAAGAAGATATATGCC+TGG | 0.538469 | 2_2:-14193427 | None:intergenic |
| TAAAATTTCAGGAGGAGAAG+AGG | 0.539106 | 2_2:+14193784 | Msa0239650:intron |
| CCAAACAATTCATGAACTTG+AGG | 0.539948 | 2_2:+14193586 | Msa0239650:CDS |
| AACAAATGAAGTATGATCAC+TGG | 0.540299 | 2_2:-14191903 | None:intergenic |
| AAGCCACCGGCAAAAGATTG+TGG | 0.540851 | 2_2:+14193547 | Msa0239650:CDS |
| TATATATAGTATTATTCCAT+AGG | 0.547203 | 2_2:-14191880 | None:intergenic |
| AGAAGAAAGAAAGATTATGC+AGG | 0.548152 | 2_2:+14193920 | Msa0239650:CDS |
| CACTAGAGAGGGAATTAGCA+AGG | 0.557388 | 2_2:+14193808 | Msa0239650:CDS |
| CAACAGAATTGCAACTGTTG+CGG | 0.557551 | 2_2:+14193845 | Msa0239650:CDS |
| TTAAGTTTCGTAACGAACAA+TGG | 0.569896 | 2_2:+14194202 | Msa0239650:CDS |
| GAGACGGATCGAGATCTGCC+AGG | 0.577223 | 2_2:+14193409 | Msa0239650:CDS |
| TGGTGAAATCAAGGCCATAA+GGG | 0.577785 | 2_2:+14192640 | Msa0239650:CDS |
| ATCTTAATCTCGTCTTCAAG+AGG | 0.579230 | 2_2:-14193116 | None:intergenic |
| TGATGGAAAGTGCCCTATTG+AGG | 0.579242 | 2_2:-14191844 | None:intergenic |
| GAAAATGGTTGTCAATGAAG+AGG | 0.581609 | 2_2:+14191951 | Msa0239650:exon |
| AGACGAAAAGAAAGATGCGT+TGG | 0.582689 | 2_2:+14193004 | Msa0239650:CDS |
| AACTGAAGCTAAGAAAGATA+AGG | 0.586496 | 2_2:+14192664 | Msa0239650:CDS |
| GCTCACAAAGTCGAAAGAGT+TGG | 0.587191 | 2_2:+14193298 | Msa0239650:CDS |
| GAAAGATAAGGCCATAGAAG+AGG | 0.588351 | 2_2:+14192676 | Msa0239650:CDS |
| ACAACATCTGGTTTGACAAG+AGG | 0.589315 | 2_2:-14191976 | None:intergenic |
| TTATGCAGGCAGAGATGCAA+AGG | 0.590511 | 2_2:+14193934 | Msa0239650:CDS |
| AGGAGAAGAGGACACTAGAG+AGG | 0.591941 | 2_2:+14193796 | Msa0239650:CDS |
| CGCAGGATAAACTGAAGCTG+AGG | 0.593606 | 2_2:+14194092 | Msa0239650:intron |
| AAAACTTTGACCTGAAGAGA+CGG | 0.598972 | 2_2:+14193393 | Msa0239650:CDS |
| ATGGCTGGGAACCGAAAACC+GGG | 0.599697 | 2_2:+14194319 | Msa0239650:CDS |
| AGGTCATGCCTGTTAGGCAA+TGG | 0.612732 | 2_2:+14193895 | Msa0239650:CDS |
| TTATGGCCTTGATTTCACCA+TGG | 0.621711 | 2_2:-14192637 | None:intergenic |
| TCACCAAAATTGGATACCAA+AGG | 0.622755 | 2_2:+14191671 | Msa0239650:five_prime_UTR |
| TAACCAAAATAGAAGACCAA+AGG | 0.624121 | 2_2:+14191776 | Msa0239650:five_prime_UTR |
| AAGATAAGAAAGCTTTGGAA+CGG | 0.627349 | 2_2:+14193276 | Msa0239650:CDS |
| TGATTTAGAAAGCACTGATG+TGG | 0.627887 | 2_2:+14194510 | Msa0239650:CDS |
| AATGAACTTGCTACATGCCA+TGG | 0.628116 | 2_2:+14192620 | Msa0239650:CDS |
| AGTTTCGTAACGAACAATGG+TGG | 0.630214 | 2_2:+14194205 | Msa0239650:CDS |
| CAACCAAGAGGATCTACCGT+TGG | 0.630663 | 2_2:+14194250 | Msa0239650:CDS |
| ATAATCACGAATGAGATTAG+CGG | 0.637427 | 2_2:-14193633 | None:intergenic |
| AAATCTTGGAGAAAAGCCAC+CGG | 0.637665 | 2_2:+14193534 | Msa0239650:CDS |
| TTATGGTAAGTGTACTGTTG+AGG | 0.644306 | 2_2:-14191756 | None:intergenic |
| GCAACATAGACAGTATGGCT+GGG | 0.648667 | 2_2:+14194305 | Msa0239650:CDS |
| TGGCATTGCTTGAAGCAGAG+AGG | 0.652208 | 2_2:+14193318 | Msa0239650:CDS |
| TTGGAACAAAGTGTTTCCAA+CGG | 0.656799 | 2_2:-14194266 | None:intergenic |
| ATCACGAATGAGATTAGCGG+TGG | 0.659965 | 2_2:-14193630 | None:intergenic |
| GGAGAAGAGGACACTAGAGA+GGG | 0.660251 | 2_2:+14193797 | Msa0239650:CDS |
| AATGAGATACAGGTGAACAC+AGG | 0.676366 | 2_2:+14194439 | Msa0239650:CDS |
| TGATGGTAAGTGTACTGTTG+AGG | 0.679865 | 2_2:-14191651 | None:intergenic |
| ACTAGAGAGGGAATTAGCAA+GGG | 0.681716 | 2_2:+14193809 | Msa0239650:CDS |
| GATTAAGATGTATAGAACTG+AGG | 0.694125 | 2_2:+14193130 | Msa0239650:CDS |
| AGGTCTACATCACAACCAAG+AGG | 0.700161 | 2_2:+14194238 | Msa0239650:CDS |
| TGATTCTGCAGCATATTGTG+CGG | 0.724358 | 2_2:-14193027 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGGTATTTAAAAAAATAA+AGG | + | chr2_2:14192280-14192299 | Msa0239650:intron | 10.0% |
| !!! | TAATTTATTTTTTTCTATGT+AGG | + | chr2_2:14194015-14194034 | Msa0239650:intron | 10.0% |
| !!! | TATATAAAGTATTTTTCCTT+TGG | - | chr2_2:14191795-14191814 | None:intergenic | 15.0% |
| !! | TATATATAGTATTATTCCAT+AGG | - | chr2_2:14191883-14191902 | None:intergenic | 15.0% |
| !! | TTAAAAAAATCAATAGATCA+AGG | + | chr2_2:14192461-14192480 | Msa0239650:intron | 15.0% |
| !! | TAAAAAAATCAATAGATCAA+GGG | + | chr2_2:14192462-14192481 | Msa0239650:intron | 15.0% |
| !!! | CTATTTTTACTCCTTATTTT+TGG | + | chr2_2:14192159-14192178 | Msa0239650:intron | 20.0% |
| !!! | TTTCTTTTACACATTAACAA+TGG | - | chr2_2:14192325-14192344 | None:intergenic | 20.0% |
| !! | AACAAATAATGTTCTAACTT+TGG | - | chr2_2:14192756-14192775 | None:intergenic | 20.0% |
| !!! | CATAGAATTTATCATTGTTT+TGG | - | chr2_2:14192929-14192948 | None:intergenic | 20.0% |
| !! | TAAAAAAAGAAGTCAGATAA+CGG | - | chr2_2:14194738-14194757 | None:intergenic | 20.0% |
| !!! | TTTAGTTCTATGTAACAAAA+GGG | - | chr2_2:14194824-14194843 | None:intergenic | 20.0% |
| !! | ATTCTTTATGAAGAGAAAAT+TGG | + | chr2_2:14195120-14195139 | Msa0239650:three_prime_UTR | 20.0% |
| !! | ATACTATAGTGTTTTTCCTT+TGG | - | chr2_2:14191690-14191709 | None:intergenic | 25.0% |
| ! | ACAAAAATACCAACAACAAA+TGG | - | chr2_2:14191730-14191749 | None:intergenic | 25.0% |
| ! | TTTACCAAGAAAGAAGAAAA+TGG | + | chr2_2:14191936-14191955 | Msa0239650:exon | 25.0% |
| ! | ATTTGCTTCATCATTTGATT+AGG | + | chr2_2:14192068-14192087 | Msa0239650:intron | 25.0% |
| !!! | GCACTTTTTTTTTTATCGTA+AGG | + | chr2_2:14192219-14192238 | Msa0239650:intron | 25.0% |
| !! | TTAAATACCTTTTGTTACCT+TGG | - | chr2_2:14192272-14192291 | None:intergenic | 25.0% |
| ! | AACTAGTGACAATTTATTCA+TGG | + | chr2_2:14192404-14192423 | Msa0239650:intron | 25.0% |
| !! | ATCACAGTTTTCTTTGAATA+TGG | + | chr2_2:14192521-14192540 | Msa0239650:intron | 25.0% |
| ! | AAAAACAAATACCTCTTCTA+TGG | - | chr2_2:14192690-14192709 | None:intergenic | 25.0% |
| ! | GTTAGTGTTATCATCTTTAA+AGG | - | chr2_2:14193223-14193242 | None:intergenic | 25.0% |
| ! | ATAGAAACTATACACGAAAA+TGG | - | chr2_2:14193454-14193473 | None:intergenic | 25.0% |
| ! | TGTATAGTTTCTATATCGAA+CGG | + | chr2_2:14193460-14193479 | Msa0239650:intron | 25.0% |
| !! | TTATACAACTTTTCATGAAC+AGG | + | chr2_2:14193502-14193521 | Msa0239650:intron | 25.0% |
| !!! | TGGTTTTAGCATAAAATTTC+AGG | + | chr2_2:14193773-14193792 | Msa0239650:intron | 25.0% |
| !! | TTTTAGCATAAAATTTCAGG+AGG | + | chr2_2:14193776-14193795 | Msa0239650:intron | 25.0% |
| !! | ATATTCGATTTATCAGCTTT+TGG | - | chr2_2:14194181-14194200 | None:intergenic | 25.0% |
| ! | AGCATAACCAAAATGAAATA+TGG | + | chr2_2:14194343-14194362 | Msa0239650:CDS | 25.0% |
| !!! | ACCTTTTTTCAACACATTTT+CGG | - | chr2_2:14194374-14194393 | None:intergenic | 25.0% |
| !! | ATGTGTTGAAAAAAGGTATA+TGG | + | chr2_2:14194377-14194396 | Msa0239650:CDS | 25.0% |
| !! | TGTGTTGAAAAAAGGTATAT+GGG | + | chr2_2:14194378-14194397 | Msa0239650:CDS | 25.0% |
| !! | TCAAGAAACAAATTTTCTGA+TGG | + | chr2_2:14194403-14194422 | Msa0239650:CDS | 25.0% |
| ! | TGAAAAAGAAAATGAGATAC+AGG | + | chr2_2:14194429-14194448 | Msa0239650:CDS | 25.0% |
| ! | AAAAAGAAGTCATCAATTTG+AGG | + | chr2_2:14194560-14194579 | Msa0239650:CDS | 25.0% |
| ! | TACCTTAATTTCTTCATCTT+TGG | - | chr2_2:14194620-14194639 | None:intergenic | 25.0% |
| !!! | CTTTAGTTCTATGTAACAAA+AGG | - | chr2_2:14194825-14194844 | None:intergenic | 25.0% |
| ! | AGGTTAACTATAGAAGTAAA+AGG | - | chr2_2:14195054-14195073 | None:intergenic | 25.0% |
| !! | GTAATTTTATAGCATTGTTC+AGG | - | chr2_2:14195074-14195093 | None:intergenic | 25.0% |
| ! | AATGCTATAAAATTACTGCA+GGG | + | chr2_2:14195078-14195097 | Msa0239650:intron | 25.0% |
| !! | TAAAAGCCATCATTTGTTGT+TGG | + | chr2_2:14191613-14191632 | Msa0239650:five_prime_UTR | 30.0% |
| AAAACACCAACAACAAATGA+TGG | - | chr2_2:14191622-14191641 | None:intergenic | 30.0% | |
| ! | TTTCCTTTGGTATCCAATTT+TGG | - | chr2_2:14191677-14191696 | None:intergenic | 30.0% |
| !!! | TTGGTCTTCTATTTTGGTTA+TGG | - | chr2_2:14191776-14191795 | None:intergenic | 30.0% |
| TAACCAAAATAGAAGACCAA+AGG | + | chr2_2:14191776-14191795 | Msa0239650:five_prime_UTR | 30.0% | |
| !! | TTTCCTTTGGTCTTCTATTT+TGG | - | chr2_2:14191782-14191801 | None:intergenic | 30.0% |
| ! | TTTTTGTACTTAGCCTCAAT+AGG | + | chr2_2:14191831-14191850 | Msa0239650:five_prime_UTR | 30.0% |
| ! | TTTTGTACTTAGCCTCAATA+GGG | + | chr2_2:14191832-14191851 | Msa0239650:five_prime_UTR | 30.0% |
| AACAAATGAAGTATGATCAC+TGG | - | chr2_2:14191906-14191925 | None:intergenic | 30.0% | |
| ! | ACAACCATTTTCTTCTTTCT+TGG | - | chr2_2:14191943-14191962 | None:intergenic | 30.0% |
| CATTTGCAAAACAAACTCAT+AGG | + | chr2_2:14192015-14192034 | Msa0239650:CDS | 30.0% | |
| AACACCAATGGAAAATTAGA+TGG | + | chr2_2:14192104-14192123 | Msa0239650:intron | 30.0% | |
| ! | TTTAAGTGAACTCTTTTCCA+AGG | + | chr2_2:14192252-14192271 | Msa0239650:intron | 30.0% |
| ! | CTTTTACACATTAACAATGG+TGG | - | chr2_2:14192322-14192341 | None:intergenic | 30.0% |
| TCATGACTAAAAAGTGATAG+TGG | + | chr2_2:14192380-14192399 | Msa0239650:intron | 30.0% | |
| AAAAATCAATAGATCAAGGG+AGG | + | chr2_2:14192465-14192484 | Msa0239650:intron | 30.0% | |
| !! | GTTTTAATCTGTTGCAGAAA+AGG | + | chr2_2:14192595-14192614 | Msa0239650:intron | 30.0% |
| AACTGAAGCTAAGAAAGATA+AGG | + | chr2_2:14192664-14192683 | Msa0239650:CDS | 30.0% | |
| GAGAAATGAAGTAAGTAAGA+TGG | + | chr2_2:14192850-14192869 | Msa0239650:CDS | 30.0% | |
| AGAGGATCATCTTAAAAACA+AGG | + | chr2_2:14192892-14192911 | Msa0239650:CDS | 30.0% | |
| AAGATTACACACAGATCAAA+AGG | + | chr2_2:14193058-14193077 | Msa0239650:CDS | 30.0% | |
| GATTAAGATGTATAGAACTG+AGG | + | chr2_2:14193130-14193149 | Msa0239650:CDS | 30.0% | |
| AACGCATCATTAATGGAAAT+TGG | - | chr2_2:14193166-14193185 | None:intergenic | 30.0% | |
| CATTGTAAACGCATCATTAA+TGG | - | chr2_2:14193173-14193192 | None:intergenic | 30.0% | |
| !! | AAGATAAGAAAGCTTTGGAA+CGG | + | chr2_2:14193276-14193295 | Msa0239650:CDS | 30.0% |
| AACATAAGAAGATATATGCC+TGG | - | chr2_2:14193430-14193449 | None:intergenic | 30.0% | |
| ATAATCACGAATGAGATTAG+CGG | - | chr2_2:14193636-14193655 | None:intergenic | 30.0% | |
| ! | TTTTGGACTAACTTTTGCAT+AGG | + | chr2_2:14193715-14193734 | Msa0239650:intron | 30.0% |
| ! | CATAGGAATTTTGTATCTAC+TGG | + | chr2_2:14193732-14193751 | Msa0239650:intron | 30.0% |
| GGTTTATCTATACAGTAACA+TGG | + | chr2_2:14193753-14193772 | Msa0239650:intron | 30.0% | |
| ATGGAAAGATGAAAGTGATA+AGG | + | chr2_2:14193875-14193894 | Msa0239650:CDS | 30.0% | |
| AGAAGAAAGAAAGATTATGC+AGG | + | chr2_2:14193920-14193939 | Msa0239650:CDS | 30.0% | |
| AAAAGCAGAATCACAATTGA+AGG | + | chr2_2:14193992-14194011 | Msa0239650:CDS | 30.0% | |
| !! | ATACGGTATTTATTTTTCGC+AGG | + | chr2_2:14194075-14194094 | Msa0239650:intron | 30.0% |
| TTAAGTTTCGTAACGAACAA+TGG | + | chr2_2:14194202-14194221 | Msa0239650:CDS | 30.0% | |
| TTCCAAAAGCCAAACATAAA+AGG | + | chr2_2:14194283-14194302 | Msa0239650:CDS | 30.0% | |
| ! | TCTATGTTGCCTTTTATGTT+TGG | - | chr2_2:14194295-14194314 | None:intergenic | 30.0% |
| ! | GGTAGAACCATATTTCATTT+TGG | - | chr2_2:14194353-14194372 | None:intergenic | 30.0% |
| ACCGAAAATGTGTTGAAAAA+AGG | + | chr2_2:14194370-14194389 | Msa0239650:CDS | 30.0% | |
| ! | AGAAACAAATTTTCTGATGG+TGG | + | chr2_2:14194406-14194425 | Msa0239650:CDS | 30.0% |
| CACCAAAGATGAAGAAATTA+AGG | + | chr2_2:14194615-14194634 | Msa0239650:intron | 30.0% | |
| AGATGAAGAAATTAAGGTAC+TGG | + | chr2_2:14194621-14194640 | Msa0239650:intron | 30.0% | |
| TTGTCAATCGTAGAAAATAG+TGG | + | chr2_2:14194667-14194686 | Msa0239650:intron | 30.0% | |
| CATCAATAAAATCCGATGAT+AGG | + | chr2_2:14194959-14194978 | Msa0239650:intron | 30.0% | |
| GAAGTTCAAACTTCTCTAAA+AGG | + | chr2_2:14194992-14195011 | Msa0239650:intron | 30.0% | |
| CAATGCTATAAAATTACTGC+AGG | + | chr2_2:14195077-14195096 | Msa0239650:intron | 30.0% | |
| CTTTATGAAGAGAAAATTGG+AGG | + | chr2_2:14195123-14195142 | Msa0239650:three_prime_UTR | 30.0% | |
| ACACTTACCATCACCAAAAT+TGG | + | chr2_2:14191661-14191680 | Msa0239650:five_prime_UTR | 35.0% | |
| !! | TTGGTATCCAATTTTGGTGA+TGG | - | chr2_2:14191671-14191690 | None:intergenic | 35.0% |
| TCACCAAAATTGGATACCAA+AGG | + | chr2_2:14191671-14191690 | Msa0239650:five_prime_UTR | 35.0% | |
| !! | TAGCATACTCCATTTGTTGT+TGG | + | chr2_2:14191718-14191737 | Msa0239650:five_prime_UTR | 35.0% |
| TTATGGTAAGTGTACTGTTG+AGG | - | chr2_2:14191759-14191778 | None:intergenic | 35.0% | |
| !! | TAGGTGTTCTACTTTTGTGA+TGG | - | chr2_2:14191864-14191883 | None:intergenic | 35.0% |
| TCACAAAAGTAGAACACCTA+TGG | + | chr2_2:14191864-14191883 | Msa0239650:five_prime_UTR | 35.0% | |
| GAAAATGGTTGTCAATGAAG+AGG | + | chr2_2:14191951-14191970 | Msa0239650:exon | 35.0% | |
| TCATGCATGTAAAACACCAA+TGG | + | chr2_2:14192092-14192111 | Msa0239650:intron | 35.0% | |
| ! | GAGTCCATCTAATTTTCCAT+TGG | - | chr2_2:14192111-14192130 | None:intergenic | 35.0% |
| CTGACACAAGACCAAAAATA+AGG | - | chr2_2:14192173-14192192 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGTCTTGTGTCAG+TGG | + | chr2_2:14192173-14192192 | Msa0239650:intron | 35.0% |
| ! | CTCTTTTCCAAGGTAACAAA+AGG | + | chr2_2:14192262-14192281 | Msa0239650:intron | 35.0% |
| ATCTTAATCTCGTCTTCAAG+AGG | - | chr2_2:14193119-14193138 | None:intergenic | 35.0% | |
| TCAGGAAGATAAGAAAGCTT+TGG | + | chr2_2:14193271-14193290 | Msa0239650:CDS | 35.0% | |
| AAAACTTTGACCTGAAGAGA+CGG | + | chr2_2:14193393-14193412 | Msa0239650:CDS | 35.0% | |
| ! | TACAACTTTTCATGAACAGG+AGG | + | chr2_2:14193505-14193524 | Msa0239650:intron | 35.0% |
| CCTCAAGTTCATGAATTGTT+TGG | - | chr2_2:14193589-14193608 | None:intergenic | 35.0% | |
| CCAAACAATTCATGAACTTG+AGG | + | chr2_2:14193586-14193605 | Msa0239650:CDS | 35.0% | |
| ! | TGATATGACGACTTGCATTT+TGG | + | chr2_2:14193698-14193717 | Msa0239650:intron | 35.0% |
| TAAAATTTCAGGAGGAGAAG+AGG | + | chr2_2:14193784-14193803 | Msa0239650:intron | 35.0% | |
| !!! | TTTTGCTGTTCTCTCTGATA+TGG | - | chr2_2:14193976-14193995 | None:intergenic | 35.0% |
| AGAAGGCTTAAAGCAATTCT+CGG | + | chr2_2:14194129-14194148 | Msa0239650:CDS | 35.0% | |
| TGGAGATACTGAAAATGCAT+TGG | - | chr2_2:14194161-14194180 | None:intergenic | 35.0% | |
| ! | TTGGAACAAAGTGTTTCCAA+CGG | - | chr2_2:14194269-14194288 | None:intergenic | 35.0% |
| !!! | TGCCTTTTATGTTTGGCTTT+TGG | - | chr2_2:14194288-14194307 | None:intergenic | 35.0% |
| AAAAGGCAACATAGACAGTA+TGG | + | chr2_2:14194300-14194319 | Msa0239650:CDS | 35.0% | |
| !!! | TTCATTTTGGTTATGCTACC+CGG | - | chr2_2:14194340-14194359 | None:intergenic | 35.0% |
| ! | TTTAGAGTCTTCATCAGCAT+TGG | - | chr2_2:14194476-14194495 | None:intergenic | 35.0% |
| !! | TGATTTAGAAAGCACTGATG+TGG | + | chr2_2:14194510-14194529 | Msa0239650:CDS | 35.0% |
| CGATTGACAACTTTGATATG+AGG | - | chr2_2:14194657-14194676 | None:intergenic | 35.0% | |
| CAATAAAATCCGATGATAGG+AGG | + | chr2_2:14194962-14194981 | Msa0239650:intron | 35.0% | |
| TGATGGTAAGTGTACTGTTG+AGG | - | chr2_2:14191654-14191673 | None:intergenic | 40.0% | |
| TAAGTGTACTGTTGAGGCTA+AGG | - | chr2_2:14191648-14191667 | None:intergenic | 40.0% | |
| ! | ACAACATCTGGTTTGACAAG+AGG | - | chr2_2:14191979-14191998 | None:intergenic | 40.0% |
| CAAACCAGATGTTGTTGTGT+TGG | + | chr2_2:14191984-14192003 | Msa0239650:CDS | 40.0% | |
| ATCTCCAACACAACAACATC+TGG | - | chr2_2:14191991-14192010 | None:intergenic | 40.0% | |
| ! | TAGATGGACTCATTGTGTCA+AGG | + | chr2_2:14192120-14192139 | Msa0239650:intron | 40.0% |
| !! | AATGAACTTGCTACATGCCA+TGG | + | chr2_2:14192620-14192639 | Msa0239650:CDS | 40.0% |
| TACATGCCATGGTGAAATCA+AGG | + | chr2_2:14192631-14192650 | Msa0239650:CDS | 40.0% | |
| ! | TTATGGCCTTGATTTCACCA+TGG | - | chr2_2:14192640-14192659 | None:intergenic | 40.0% |
| ATGGTGAAATCAAGGCCATA+AGG | + | chr2_2:14192639-14192658 | Msa0239650:CDS | 40.0% | |
| TGGTGAAATCAAGGCCATAA+GGG | + | chr2_2:14192640-14192659 | Msa0239650:CDS | 40.0% | |
| GAAAGATAAGGCCATAGAAG+AGG | + | chr2_2:14192676-14192695 | Msa0239650:CDS | 40.0% | |
| TGCGAGACTAAGACTTAAAG+AGG | + | chr2_2:14192874-14192893 | Msa0239650:CDS | 40.0% | |
| CTGTCAGTTTCTTGACTTCT+AGG | - | chr2_2:14192986-14193005 | None:intergenic | 40.0% | |
| AGACGAAAAGAAAGATGCGT+TGG | + | chr2_2:14193004-14193023 | Msa0239650:CDS | 40.0% | |
| TGATTCTGCAGCATATTGTG+CGG | - | chr2_2:14193030-14193049 | None:intergenic | 40.0% | |
| !! | GAAGTGCTGTAATCTGTAGA+TGG | - | chr2_2:14193253-14193272 | None:intergenic | 40.0% |
| TCTACAGATTACAGCACTTC+AGG | + | chr2_2:14193253-14193272 | Msa0239650:intron | 40.0% | |
| ACAGGAGGAGAACAAAATCT+TGG | + | chr2_2:14193520-14193539 | Msa0239650:intron | 40.0% | |
| AAATCTTGGAGAAAAGCCAC+CGG | + | chr2_2:14193534-14193553 | Msa0239650:CDS | 40.0% | |
| ! | CAACTTCCACAATCTTTTGC+CGG | - | chr2_2:14193556-14193575 | None:intergenic | 40.0% |
| GAGGAGCTCATCTTATCAAA+TGG | + | chr2_2:14193605-14193624 | Msa0239650:CDS | 40.0% | |
| CAGATTTCTGAGTTGCAAGT+AGG | + | chr2_2:14193662-14193681 | Msa0239650:intron | 40.0% | |
| ACTAGAGAGGGAATTAGCAA+GGG | + | chr2_2:14193809-14193828 | Msa0239650:CDS | 40.0% | |
| CAACAGAATTGCAACTGTTG+CGG | + | chr2_2:14193845-14193864 | Msa0239650:CDS | 40.0% | |
| TCTTCTAACCATTGCCTAAC+AGG | - | chr2_2:14193906-14193925 | None:intergenic | 40.0% | |
| AGGCTAAAAACGCTTGAAGA+AGG | + | chr2_2:14194112-14194131 | Msa0239650:CDS | 40.0% | |
| AGTTTCGTAACGAACAATGG+TGG | + | chr2_2:14194205-14194224 | Msa0239650:CDS | 40.0% | |
| !! | ACAATGGTGGATTGAGAAAC+AGG | + | chr2_2:14194218-14194237 | Msa0239650:CDS | 40.0% |
| AATGAGATACAGGTGAACAC+AGG | + | chr2_2:14194439-14194458 | Msa0239650:CDS | 40.0% | |
| GATGCTCACAAAGAAAGTTG+AGG | + | chr2_2:14194864-14194883 | Msa0239650:intron | 40.0% | |
| !! | GAAAGTTGAGGCATTGACAA+AGG | + | chr2_2:14194876-14194895 | Msa0239650:intron | 40.0% |
| CAAAGGCTATGGAAGTAGAA+TGG | + | chr2_2:14194893-14194912 | Msa0239650:intron | 40.0% | |
| !! | TCTGCTTTTCCTCCTATCAT+CGG | - | chr2_2:14194974-14194993 | None:intergenic | 40.0% |
| TCTCAGACTCTGTAAGTTAG+TGG | - | chr2_2:14195229-14195248 | None:intergenic | 40.0% | |
| CTTCTCTGTATGTACAGAGT+TGG | - | chr2_2:14195253-14195272 | None:intergenic | 40.0% | |
| !! | TGATGGAAAGTGCCCTATTG+AGG | - | chr2_2:14191847-14191866 | None:intergenic | 45.0% |
| !! | TTGGTCTTGTGTCAGTGGTA+AGG | + | chr2_2:14192178-14192197 | Msa0239650:intron | 45.0% |
| CTTAGCTTCAGTTGCCCTTA+TGG | - | chr2_2:14192657-14192676 | None:intergenic | 45.0% | |
| GGCGTGATGACACTTTCAAA+TGG | - | chr2_2:14193098-14193117 | None:intergenic | 45.0% | |
| GCTCACAAAGTCGAAAGAGT+TGG | + | chr2_2:14193298-14193317 | Msa0239650:CDS | 45.0% | |
| ATCACGAATGAGATTAGCGG+TGG | - | chr2_2:14193633-14193652 | None:intergenic | 45.0% | |
| CACTAGAGAGGGAATTAGCA+AGG | + | chr2_2:14193808-14193827 | Msa0239650:CDS | 45.0% | |
| CGCAACAGTTGCAATTCTGT+TGG | - | chr2_2:14193847-14193866 | None:intergenic | 45.0% | |
| CAACTGTTGCGGCTAATGAA+TGG | + | chr2_2:14193856-14193875 | Msa0239650:CDS | 45.0% | |
| GTGATAAGGTCATGCCTGTT+AGG | + | chr2_2:14193889-14193908 | Msa0239650:CDS | 45.0% | |
| TTATGCAGGCAGAGATGCAA+AGG | + | chr2_2:14193934-14193953 | Msa0239650:CDS | 45.0% | |
| AGGTCTACATCACAACCAAG+AGG | + | chr2_2:14194238-14194257 | Msa0239650:CDS | 45.0% | |
| TTTCCAACGGTAGATCCTCT+TGG | - | chr2_2:14194256-14194275 | None:intergenic | 45.0% | |
| GCAACATAGACAGTATGGCT+GGG | + | chr2_2:14194305-14194324 | Msa0239650:CDS | 45.0% | |
| ! | TGGTTATGCTACCCGGTTTT+CGG | - | chr2_2:14194333-14194352 | None:intergenic | 45.0% |
| !! | TGAGGCATTGACAAAGGCTA+TGG | + | chr2_2:14194882-14194901 | Msa0239650:intron | 45.0% |
| !!! | TAGTAATAAATAATTTTATA+CGG | + | chr2_2:14194058-14194077 | Msa0239650:intron | 5.0% |
| TGGCATTGCTTGAAGCAGAG+AGG | + | chr2_2:14193318-14193337 | Msa0239650:CDS | 50.0% | |
| AGATCTCGATCCGTCTCTTC+AGG | - | chr2_2:14193406-14193425 | None:intergenic | 50.0% | |
| AAGCCACCGGCAAAAGATTG+TGG | + | chr2_2:14193547-14193566 | Msa0239650:CDS | 50.0% | |
| ! | CTTCCACAATCTTTTGCCGG+TGG | - | chr2_2:14193553-14193572 | None:intergenic | 50.0% |
| AGGAGAAGAGGACACTAGAG+AGG | + | chr2_2:14193796-14193815 | Msa0239650:CDS | 50.0% | |
| GGAGAAGAGGACACTAGAGA+GGG | + | chr2_2:14193797-14193816 | Msa0239650:CDS | 50.0% | |
| AGGTCATGCCTGTTAGGCAA+TGG | + | chr2_2:14193895-14193914 | Msa0239650:CDS | 50.0% | |
| CGCAGGATAAACTGAAGCTG+AGG | + | chr2_2:14194092-14194111 | Msa0239650:intron | 50.0% | |
| CAACCAAGAGGATCTACCGT+TGG | + | chr2_2:14194250-14194269 | Msa0239650:CDS | 50.0% | |
| GGCAACATAGACAGTATGGC+TGG | + | chr2_2:14194304-14194323 | Msa0239650:CDS | 50.0% | |
| TATGGCTGGGAACCGAAAAC+CGG | + | chr2_2:14194318-14194337 | Msa0239650:CDS | 50.0% | |
| !! | GAAAGCACTGATGTGGTCTC+TGG | + | chr2_2:14194517-14194536 | Msa0239650:CDS | 50.0% |
| ATGGCTGGGAACCGAAAACC+GGG | + | chr2_2:14194319-14194338 | Msa0239650:CDS | 55.0% | |
| GAGACGGATCGAGATCTGCC+AGG | + | chr2_2:14193409-14193428 | Msa0239650:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 14191595 | 14195324 | 14191595 | ID=Msa0239650;Name=Msa0239650 |
| chr2_2 | mRNA | 14191595 | 14195324 | 14191595 | ID=Msa0239650-mRNA-1;Parent=Msa0239650;Name=Msa0239650-mRNA-1;_AED=0.12;_eAED=0.12;_QI=360|0.75|0.77|1|1|1|9|221|492 |
| chr2_2 | exon | 14191595 | 14192036 | 14191595 | ID=Msa0239650-mRNA-1:exon:5894;Parent=Msa0239650-mRNA-1 |
| chr2_2 | exon | 14192612 | 14192697 | 14192612 | ID=Msa0239650-mRNA-1:exon:5895;Parent=Msa0239650-mRNA-1 |
| chr2_2 | exon | 14192848 | 14192913 | 14192848 | ID=Msa0239650-mRNA-1:exon:5896;Parent=Msa0239650-mRNA-1 |
| chr2_2 | exon | 14192981 | 14193151 | 14192981 | ID=Msa0239650-mRNA-1:exon:5897;Parent=Msa0239650-mRNA-1 |
| chr2_2 | exon | 14193260 | 14193460 | 14193260 | ID=Msa0239650-mRNA-1:exon:5898;Parent=Msa0239650-mRNA-1 |
| chr2_2 | exon | 14193524 | 14193679 | 14193524 | ID=Msa0239650-mRNA-1:exon:5899;Parent=Msa0239650-mRNA-1 |
| chr2_2 | exon | 14193795 | 14194013 | 14193795 | ID=Msa0239650-mRNA-1:exon:5900;Parent=Msa0239650-mRNA-1 |
| chr2_2 | exon | 14194097 | 14194589 | 14194097 | ID=Msa0239650-mRNA-1:exon:5901;Parent=Msa0239650-mRNA-1 |
| chr2_2 | exon | 14195099 | 14195324 | 14195099 | ID=Msa0239650-mRNA-1:exon:5902;Parent=Msa0239650-mRNA-1 |
| chr2_2 | five_prime_UTR | 14191595 | 14191954 | 14191595 | ID=Msa0239650-mRNA-1:five_prime_utr;Parent=Msa0239650-mRNA-1 |
| chr2_2 | CDS | 14191955 | 14192036 | 14191955 | ID=Msa0239650-mRNA-1:cds;Parent=Msa0239650-mRNA-1 |
| chr2_2 | CDS | 14192612 | 14192697 | 14192612 | ID=Msa0239650-mRNA-1:cds;Parent=Msa0239650-mRNA-1 |
| chr2_2 | CDS | 14192848 | 14192913 | 14192848 | ID=Msa0239650-mRNA-1:cds;Parent=Msa0239650-mRNA-1 |
| chr2_2 | CDS | 14192981 | 14193151 | 14192981 | ID=Msa0239650-mRNA-1:cds;Parent=Msa0239650-mRNA-1 |
| chr2_2 | CDS | 14193260 | 14193460 | 14193260 | ID=Msa0239650-mRNA-1:cds;Parent=Msa0239650-mRNA-1 |
| chr2_2 | CDS | 14193524 | 14193679 | 14193524 | ID=Msa0239650-mRNA-1:cds;Parent=Msa0239650-mRNA-1 |
| chr2_2 | CDS | 14193795 | 14194013 | 14193795 | ID=Msa0239650-mRNA-1:cds;Parent=Msa0239650-mRNA-1 |
| chr2_2 | CDS | 14194097 | 14194589 | 14194097 | ID=Msa0239650-mRNA-1:cds;Parent=Msa0239650-mRNA-1 |
| chr2_2 | CDS | 14195099 | 14195103 | 14195099 | ID=Msa0239650-mRNA-1:cds;Parent=Msa0239650-mRNA-1 |
| chr2_2 | three_prime_UTR | 14195104 | 14195324 | 14195104 | ID=Msa0239650-mRNA-1:three_prime_utr;Parent=Msa0239650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
