Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0317240 | XP_013462928.1 | 91.281 | 562 | 12 | 2 | 1 | 535 | 1 | 552 | 0.0 | 979 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0317240 | sp|Q8GYX3|MP705_ARATH | 52.174 | 529 | 170 | 9 | 16 | 512 | 9 | 486 | 1.38e-150 | 444 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0317240 | A0A072V6K1 | 91.281 | 562 | 12 | 2 | 1 | 535 | 1 | 552 | 0.0 | 979 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0048010 | Msa0317240 | 0.905626 | 3.518941e-80 | -8.615850e-47 |
Msa0141420 | Msa0317240 | 0.908342 | 1.898348e-81 | -8.615850e-47 |
Msa0197880 | Msa0317240 | 0.868594 | 5.812378e-66 | -8.615850e-47 |
Msa0239650 | Msa0317240 | 0.907967 | 2.856354e-81 | -8.615850e-47 |
Msa0277650 | Msa0317240 | 0.882668 | 8.591415e-71 | -8.615850e-47 |
Msa0317240 | Msa0527610 | 0.884136 | 2.480719e-71 | -8.615850e-47 |
Msa0317240 | Msa1117910 | 0.812290 | 4.566659e-51 | -8.615850e-47 |
Msa0317240 | Msa1447210 | 0.908568 | 1.483713e-81 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0317240 | MtrunA17_Chr2g0290411 | 91.281 | 562 | 12 | 2 | 1 | 535 | 1 | 552 | 0.0 | 979 |
Msa0317240 | MtrunA17_Chr4g0076251 | 62.653 | 573 | 153 | 6 | 6 | 535 | 19 | 573 | 0.0 | 637 |
Msa0317240 | MtrunA17_Chr8g0391771 | 44.444 | 558 | 241 | 11 | 13 | 528 | 57 | 587 | 1.68e-134 | 404 |
Msa0317240 | MtrunA17_Chr1g0161371 | 44.385 | 561 | 237 | 11 | 13 | 528 | 52 | 582 | 5.83e-134 | 402 |
Msa0317240 | MtrunA17_Chr8g0344311 | 45.133 | 565 | 225 | 11 | 13 | 528 | 53 | 581 | 6.95e-132 | 397 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0317240 | AT4G17220.1 | 52.174 | 529 | 170 | 9 | 16 | 512 | 9 | 486 | 1.41e-151 | 444 |
Msa0317240 | AT1G68060.1 | 45.975 | 559 | 229 | 13 | 13 | 526 | 66 | 596 | 4.30e-139 | 416 |
Msa0317240 | AT1G24764.1 | 44.365 | 559 | 242 | 9 | 13 | 528 | 74 | 606 | 5.30e-139 | 416 |
Msa0317240 | AT1G24764.3 | 44.365 | 559 | 242 | 9 | 13 | 528 | 133 | 665 | 1.10e-137 | 414 |
Msa0317240 | AT2G01750.2 | 43.234 | 569 | 254 | 9 | 4 | 529 | 63 | 605 | 2.56e-133 | 401 |
Msa0317240 | AT2G01750.1 | 43.234 | 569 | 254 | 9 | 4 | 529 | 63 | 605 | 3.36e-133 | 401 |
Msa0317240 | AT1G14840.1 | 43.297 | 552 | 236 | 9 | 13 | 519 | 49 | 568 | 2.60e-131 | 395 |
Msa0317240 | AT1G24764.2 | 44.259 | 479 | 198 | 9 | 93 | 528 | 1 | 453 | 1.11e-116 | 353 |
Msa0317240 | AT1G14840.2 | 41.123 | 552 | 233 | 10 | 13 | 519 | 49 | 553 | 2.25e-116 | 356 |
Find 104 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCTTTGGTCTTCTATTT+TGG | 0.106408 | 2_4:-14902102 | None:intergenic |
CTGTCAGTTTCTTGATTTCT+AGG | 0.120680 | 2_4:-14903306 | None:intergenic |
TTTCCTTTGGTATCCAATTT+TGG | 0.142874 | 2_4:-14901997 | None:intergenic |
CTTAGCTTCAGTTGCCCTTA+TGG | 0.199525 | 2_4:-14902977 | None:intergenic |
ATTCTTTATGAAGAGAAAAT+TGG | 0.212662 | 2_4:+14905445 | Msa0317240:three_prime_UTR |
GGTAGAACCATATTTCATTT+TGG | 0.221595 | 2_4:-14904673 | None:intergenic |
TTCCAAAAGCCAAACATAAA+AGG | 0.248082 | 2_4:+14904606 | Msa0317240:CDS |
ACACTTACCATCACCAAAAT+TGG | 0.257334 | 2_4:+14901984 | Msa0317240:five_prime_UTR |
GAAGTTCAAACTTCTCTAAA+AGG | 0.264788 | 2_4:+14905315 | Msa0317240:CDS |
TCTTCTAACCATTGCCTAAC+AGG | 0.277147 | 2_4:-14904226 | None:intergenic |
ATAGAAACTATACACGAAAA+TGG | 0.289286 | 2_4:-14903774 | None:intergenic |
ATATTCGATTTATCAGCTTT+TGG | 0.300457 | 2_4:-14904501 | None:intergenic |
AGCATAACCAAAATGAAATA+TGG | 0.322617 | 2_4:+14904666 | Msa0317240:CDS |
TTTACCAAGAAAGAAGAAAA+TGG | 0.324121 | 2_4:+14902259 | Msa0317240:exon |
CCTCAAGTTCATGAATTGTT+TGG | 0.350831 | 2_4:-14903909 | None:intergenic |
TCTACAGATTACAGCACTTC+AGG | 0.391041 | 2_4:+14903576 | Msa0317240:intron |
GAAAGCACTGATGTGGTCTC+TGG | 0.402489 | 2_4:+14904840 | Msa0317240:CDS |
TCTCAGACTCTTTAAGTTAG+TGG | 0.404657 | 2_4:-14905551 | None:intergenic |
GTGATAAGGTCATGCCTGTT+AGG | 0.415652 | 2_4:+14904212 | Msa0317240:CDS |
TCAGGAAGATAAGAAAGCTT+TGG | 0.418519 | 2_4:+14903594 | Msa0317240:CDS |
ACAATGGTGGATTGAGAAAC+AGG | 0.418721 | 2_4:+14904541 | Msa0317240:CDS |
AAAAGGCAACATAGACAGTA+TGG | 0.427289 | 2_4:+14904623 | Msa0317240:CDS |
TAGCATACTCCATTTGTTGT+TGG | 0.431105 | 2_4:+14902041 | Msa0317240:five_prime_UTR |
AGATCTCGATCCGTCTCTTC+AGG | 0.431500 | 2_4:-14903726 | None:intergenic |
ATCTCCAACACAACAACATC+TGG | 0.433211 | 2_4:-14902311 | None:intergenic |
AAAAGCAGAATCACAATTGA+AGG | 0.437230 | 2_4:+14904315 | Msa0317240:CDS |
TATGGCTGGGAACCGAAAAC+CGG | 0.449172 | 2_4:+14904641 | Msa0317240:CDS |
AAGATTACACACAGATCAAA+AGG | 0.452964 | 2_4:+14903381 | Msa0317240:CDS |
GAGAAATGAAGTAAGTAAGA+TGG | 0.460243 | 2_4:+14903173 | Msa0317240:CDS |
ATGGTGAAATCAAGGCCATA+AGG | 0.461955 | 2_4:+14902962 | Msa0317240:CDS |
ACAGGAGGAGAACAAAATCT+TGG | 0.462576 | 2_4:+14903843 | Msa0317240:intron |
AGAAGGCTTAAAGCAATTCT+CGG | 0.473398 | 2_4:+14904452 | Msa0317240:CDS |
GAGGAGCTCATCTTATCAAA+TGG | 0.475247 | 2_4:+14903928 | Msa0317240:CDS |
CGCAACAGTTGCAATTCTGT+TGG | 0.479391 | 2_4:-14904167 | None:intergenic |
CATCAATAAAATCCGATGAT+AGG | 0.480394 | 2_4:+14905282 | Msa0317240:CDS |
TTTAGAGTCTTCATCAGCAT+TGG | 0.483845 | 2_4:-14904796 | None:intergenic |
TGGAGATACTGAAAATGCAT+TGG | 0.489587 | 2_4:-14904481 | None:intergenic |
AAAACACCAACAACAAATGA+TGG | 0.495818 | 2_4:-14901942 | None:intergenic |
TCACAAAAGTAGAACACCTA+TGG | 0.501557 | 2_4:+14902187 | Msa0317240:five_prime_UTR |
TAAAAGCCATCATTTGTTGT+TGG | 0.502135 | 2_4:+14901936 | Msa0317240:five_prime_UTR |
GGCAACATAGACAGTATGGC+TGG | 0.502574 | 2_4:+14904627 | Msa0317240:CDS |
TTTCCAACGGTAGATCCTCT+TGG | 0.502837 | 2_4:-14904576 | None:intergenic |
CATTTGCAAAACAAACTCAT+AGG | 0.508565 | 2_4:+14902338 | Msa0317240:CDS |
TGATGCATTGACAAAGGCTA+TGG | 0.508671 | 2_4:+14905205 | Msa0317240:CDS |
CAAACCAGATGTTGTTGTGT+TGG | 0.510088 | 2_4:+14902307 | Msa0317240:CDS |
ATGGAAAGATGAAAGTGATA+AGG | 0.511209 | 2_4:+14904198 | Msa0317240:CDS |
CAAAGGCTATGGAAGTAGAA+TGG | 0.511214 | 2_4:+14905216 | Msa0317240:CDS |
CTTTATGAAGAGAAAATTGG+AGG | 0.512076 | 2_4:+14905448 | Msa0317240:three_prime_UTR |
CAACTGTTGCGGCTAATGAA+TGG | 0.512914 | 2_4:+14904179 | Msa0317240:CDS |
CTTCTCTGTATGTACAGAGT+TGG | 0.523530 | 2_4:-14905575 | None:intergenic |
TAAGTGTACTGTTGAGGCTA+AGG | 0.523957 | 2_4:-14902073 | None:intergenic |
TACATGCCATGGTGAAATCA+AGG | 0.527571 | 2_4:+14902954 | Msa0317240:CDS |
TGCGAGACTAAGACTTAAAG+AGG | 0.531452 | 2_4:+14903197 | Msa0317240:CDS |
GGCGTGATGACACTTTCAAA+TGG | 0.532270 | 2_4:-14903418 | None:intergenic |
AACATAAGAAGATATATGCC+TGG | 0.538469 | 2_4:-14903750 | None:intergenic |
TAAAATTTCAGGAGGAGAAG+AGG | 0.539106 | 2_4:+14904107 | Msa0317240:intron |
CCAAACAATTCATGAACTTG+AGG | 0.539948 | 2_4:+14903909 | Msa0317240:CDS |
AACAAATGAAGTATGATCAC+TGG | 0.540299 | 2_4:-14902226 | None:intergenic |
AAGCCACCGGCAAAAGATTG+TGG | 0.540851 | 2_4:+14903870 | Msa0317240:CDS |
TATATATAGTATTATTCCAT+AGG | 0.547203 | 2_4:-14902203 | None:intergenic |
AGAAGAAAGAAAGATTATGC+AGG | 0.548152 | 2_4:+14904243 | Msa0317240:CDS |
CACTAGAGAGGGAATTAGCA+AGG | 0.557388 | 2_4:+14904131 | Msa0317240:CDS |
CAACAGAATTGCAACTGTTG+CGG | 0.557551 | 2_4:+14904168 | Msa0317240:CDS |
TTAAGTTTCGTAACGAACAA+TGG | 0.569896 | 2_4:+14904525 | Msa0317240:CDS |
CAATAAAATCCGATGATAGG+AGG | 0.573485 | 2_4:+14905285 | Msa0317240:CDS |
GAGACGGATCGAGATCTGCC+AGG | 0.577223 | 2_4:+14903732 | Msa0317240:CDS |
TGGTGAAATCAAGGCCATAA+GGG | 0.577785 | 2_4:+14902963 | Msa0317240:CDS |
ATCTTAATCTCGTCTTCAAG+AGG | 0.579230 | 2_4:-14903439 | None:intergenic |
TGATGGAAAGTGCCCTATTG+AGG | 0.579242 | 2_4:-14902167 | None:intergenic |
GAAAATGGTTGTCAATGAAG+AGG | 0.581609 | 2_4:+14902274 | Msa0317240:exon |
AGACGAAAAGAAAGATGCGT+TGG | 0.582689 | 2_4:+14903327 | Msa0317240:CDS |
AACTGAAGCTAAGAAAGATA+AGG | 0.586496 | 2_4:+14902987 | Msa0317240:CDS |
GCTCACAAAGTCGAAAGAGT+TGG | 0.587191 | 2_4:+14903621 | Msa0317240:CDS |
GAAAGATAAGGCCATAGAAG+AGG | 0.588351 | 2_4:+14902999 | Msa0317240:CDS |
ACAACATCTGGTTTGACAAG+AGG | 0.589315 | 2_4:-14902299 | None:intergenic |
TTATGCAGGCAGAGATGCAA+AGG | 0.590511 | 2_4:+14904257 | Msa0317240:CDS |
AGGAGAAGAGGACACTAGAG+AGG | 0.591941 | 2_4:+14904119 | Msa0317240:CDS |
CGCAGGATAAACTGAAGCTG+AGG | 0.593606 | 2_4:+14904415 | Msa0317240:intron |
AAAACTTTGACCTGAAGAGA+CGG | 0.598972 | 2_4:+14903716 | Msa0317240:CDS |
ATGGCTGGGAACCGAAAACC+GGG | 0.599697 | 2_4:+14904642 | Msa0317240:CDS |
GAAAGTTGATGCATTGACAA+AGG | 0.609150 | 2_4:+14905199 | Msa0317240:intron |
AGGTCATGCCTGTTAGGCAA+TGG | 0.612732 | 2_4:+14904218 | Msa0317240:CDS |
TTATGGCCTTGATTTCACCA+TGG | 0.621711 | 2_4:-14902960 | None:intergenic |
TCACCAAAATTGGATACCAA+AGG | 0.622755 | 2_4:+14901994 | Msa0317240:five_prime_UTR |
TAACCAAAATAGAAGACCAA+AGG | 0.624121 | 2_4:+14902099 | Msa0317240:five_prime_UTR |
AAGATAAGAAAGCTTTGGAA+CGG | 0.627349 | 2_4:+14903599 | Msa0317240:CDS |
TGATTTAGAAAGCACTGATG+TGG | 0.627887 | 2_4:+14904833 | Msa0317240:CDS |
AATGAACTTGCTACATGCCA+TGG | 0.628116 | 2_4:+14902943 | Msa0317240:CDS |
AGTTTCGTAACGAACAATGG+TGG | 0.630214 | 2_4:+14904528 | Msa0317240:CDS |
CAACCAAGAGGATCTACCGT+TGG | 0.630663 | 2_4:+14904573 | Msa0317240:CDS |
ATAATCACGAATGAGATTAG+CGG | 0.637427 | 2_4:-14903956 | None:intergenic |
AAATCTTGGAGAAAAGCCAC+CGG | 0.637665 | 2_4:+14903857 | Msa0317240:CDS |
TTATGGTAAGTGTACTGTTG+AGG | 0.644306 | 2_4:-14902079 | None:intergenic |
GCAACATAGACAGTATGGCT+GGG | 0.648667 | 2_4:+14904628 | Msa0317240:CDS |
TGGCATTGCTTGAAGCAGAG+AGG | 0.652208 | 2_4:+14903641 | Msa0317240:CDS |
TTGGAACAAAGTGTTTCCAA+CGG | 0.656799 | 2_4:-14904589 | None:intergenic |
ATCACGAATGAGATTAGCGG+TGG | 0.659965 | 2_4:-14903953 | None:intergenic |
GGAGAAGAGGACACTAGAGA+GGG | 0.660251 | 2_4:+14904120 | Msa0317240:CDS |
AATGAGATACAGGTGAACAC+AGG | 0.676366 | 2_4:+14904762 | Msa0317240:CDS |
TGATGGTAAGTGTACTGTTG+AGG | 0.679865 | 2_4:-14901974 | None:intergenic |
ACTAGAGAGGGAATTAGCAA+GGG | 0.681716 | 2_4:+14904132 | Msa0317240:CDS |
GATTAAGATGTATAGAACTG+AGG | 0.694125 | 2_4:+14903453 | Msa0317240:CDS |
AGGTCTACATCACAACCAAG+AGG | 0.700161 | 2_4:+14904561 | Msa0317240:CDS |
TGATTCTGCAGCATATTGTG+CGG | 0.724358 | 2_4:-14903350 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAGGTATTTAAAAAAATAA+AGG | + | chr2_4:14902603-14902622 | Msa0317240:intron | 10.0% |
!!! | TAATTTATTTTTTTCTATGT+AGG | + | chr2_4:14904338-14904357 | Msa0317240:intron | 10.0% |
!!! | TATATAAAGTATTTTTCCTT+TGG | - | chr2_4:14902118-14902137 | None:intergenic | 15.0% |
!! | TATATATAGTATTATTCCAT+AGG | - | chr2_4:14902206-14902225 | None:intergenic | 15.0% |
!! | TTAAAAAAATCAATAGATCA+AGG | + | chr2_4:14902784-14902803 | Msa0317240:intron | 15.0% |
!! | TAAAAAAATCAATAGATCAA+GGG | + | chr2_4:14902785-14902804 | Msa0317240:intron | 15.0% |
!!! | CTATTTTTACTCCTTATTTT+TGG | + | chr2_4:14902482-14902501 | Msa0317240:intron | 20.0% |
!!! | TTTCTTTTACACATTAACAA+TGG | - | chr2_4:14902648-14902667 | None:intergenic | 20.0% |
!! | AACAAATAATGTTCTAACTT+TGG | - | chr2_4:14903079-14903098 | None:intergenic | 20.0% |
!!! | CATAGAATTTATCATTGTTT+TGG | - | chr2_4:14903252-14903271 | None:intergenic | 20.0% |
!!! | TTTAGTTCTATGTAACAAAA+GGG | - | chr2_4:14905147-14905166 | None:intergenic | 20.0% |
!!! | AATTTTTTATAGCATTGTTC+AGG | - | chr2_4:14905397-14905416 | None:intergenic | 20.0% |
!! | ATTCTTTATGAAGAGAAAAT+TGG | + | chr2_4:14905445-14905464 | Msa0317240:three_prime_UTR | 20.0% |
!! | ATACTATAGTGTTTTTCCTT+TGG | - | chr2_4:14902013-14902032 | None:intergenic | 25.0% |
! | ACAAAAATACCAACAACAAA+TGG | - | chr2_4:14902053-14902072 | None:intergenic | 25.0% |
! | TTTACCAAGAAAGAAGAAAA+TGG | + | chr2_4:14902259-14902278 | Msa0317240:exon | 25.0% |
! | ATTTGCTTCATCATTTGATT+AGG | + | chr2_4:14902391-14902410 | Msa0317240:intron | 25.0% |
!!! | GCACTTTTTTTTTTATCGTA+AGG | + | chr2_4:14902542-14902561 | Msa0317240:intron | 25.0% |
!! | TTAAATACCTTTTGTTACCT+TGG | - | chr2_4:14902595-14902614 | None:intergenic | 25.0% |
! | AACTAGTGACAATTTATTCA+TGG | + | chr2_4:14902727-14902746 | Msa0317240:intron | 25.0% |
!! | ATCACAGTTTTCTTTGAATA+TGG | + | chr2_4:14902844-14902863 | Msa0317240:intron | 25.0% |
! | AAAAACAAATACCTCTTCTA+TGG | - | chr2_4:14903013-14903032 | None:intergenic | 25.0% |
! | GTTAGTGTTATCATCTTTAA+AGG | - | chr2_4:14903546-14903565 | None:intergenic | 25.0% |
! | ATAGAAACTATACACGAAAA+TGG | - | chr2_4:14903777-14903796 | None:intergenic | 25.0% |
! | TGTATAGTTTCTATATCGAA+CGG | + | chr2_4:14903783-14903802 | Msa0317240:intron | 25.0% |
!! | TTATACAACTTTTCATGAAC+AGG | + | chr2_4:14903825-14903844 | Msa0317240:intron | 25.0% |
!!! | TGGTTTTAGCATAAAATTTC+AGG | + | chr2_4:14904096-14904115 | Msa0317240:intron | 25.0% |
!! | TTTTAGCATAAAATTTCAGG+AGG | + | chr2_4:14904099-14904118 | Msa0317240:intron | 25.0% |
!! | ATATTCGATTTATCAGCTTT+TGG | - | chr2_4:14904504-14904523 | None:intergenic | 25.0% |
! | AGCATAACCAAAATGAAATA+TGG | + | chr2_4:14904666-14904685 | Msa0317240:CDS | 25.0% |
!!! | ACCTTTTTTCAACACATTTT+CGG | - | chr2_4:14904697-14904716 | None:intergenic | 25.0% |
!! | ATGTGTTGAAAAAAGGTATA+TGG | + | chr2_4:14904700-14904719 | Msa0317240:CDS | 25.0% |
!! | TGTGTTGAAAAAAGGTATAT+GGG | + | chr2_4:14904701-14904720 | Msa0317240:CDS | 25.0% |
!! | TCAAGAAACAAATTTTCTGA+TGG | + | chr2_4:14904726-14904745 | Msa0317240:CDS | 25.0% |
! | TGAAAAAGAAAATGAGATAC+AGG | + | chr2_4:14904752-14904771 | Msa0317240:CDS | 25.0% |
! | AAAAAGAAGTCATCAATTTG+AGG | + | chr2_4:14904883-14904902 | Msa0317240:intron | 25.0% |
! | TACCTTAATTTCTTCATCTT+TGG | - | chr2_4:14904943-14904962 | None:intergenic | 25.0% |
! | CAAAAAAAGAAGTCAGATAA+CGG | - | chr2_4:14905061-14905080 | None:intergenic | 25.0% |
!!! | CTTTAGTTCTATGTAACAAA+AGG | - | chr2_4:14905148-14905167 | None:intergenic | 25.0% |
! | AGGTTAACTATAGAAGTAAA+AGG | - | chr2_4:14905377-14905396 | None:intergenic | 25.0% |
! | ATGCTATAAAAAATTACTGC+AGG | + | chr2_4:14905402-14905421 | Msa0317240:intron | 25.0% |
! | TGCTATAAAAAATTACTGCA+GGG | + | chr2_4:14905403-14905422 | Msa0317240:intron | 25.0% |
!! | TAAAAGCCATCATTTGTTGT+TGG | + | chr2_4:14901936-14901955 | Msa0317240:five_prime_UTR | 30.0% |
AAAACACCAACAACAAATGA+TGG | - | chr2_4:14901945-14901964 | None:intergenic | 30.0% | |
! | TTTCCTTTGGTATCCAATTT+TGG | - | chr2_4:14902000-14902019 | None:intergenic | 30.0% |
!!! | TTGGTCTTCTATTTTGGTTA+TGG | - | chr2_4:14902099-14902118 | None:intergenic | 30.0% |
TAACCAAAATAGAAGACCAA+AGG | + | chr2_4:14902099-14902118 | Msa0317240:five_prime_UTR | 30.0% | |
!! | TTTCCTTTGGTCTTCTATTT+TGG | - | chr2_4:14902105-14902124 | None:intergenic | 30.0% |
! | TTTTTGTACTTAGCCTCAAT+AGG | + | chr2_4:14902154-14902173 | Msa0317240:five_prime_UTR | 30.0% |
! | TTTTGTACTTAGCCTCAATA+GGG | + | chr2_4:14902155-14902174 | Msa0317240:five_prime_UTR | 30.0% |
AACAAATGAAGTATGATCAC+TGG | - | chr2_4:14902229-14902248 | None:intergenic | 30.0% | |
! | ACAACCATTTTCTTCTTTCT+TGG | - | chr2_4:14902266-14902285 | None:intergenic | 30.0% |
CATTTGCAAAACAAACTCAT+AGG | + | chr2_4:14902338-14902357 | Msa0317240:CDS | 30.0% | |
AACACCAATGGAAAATTAGA+TGG | + | chr2_4:14902427-14902446 | Msa0317240:intron | 30.0% | |
! | TTTAAGTGAACTCTTTTCCA+AGG | + | chr2_4:14902575-14902594 | Msa0317240:intron | 30.0% |
! | CTTTTACACATTAACAATGG+TGG | - | chr2_4:14902645-14902664 | None:intergenic | 30.0% |
TCATGACTAAAAAGTGATAG+TGG | + | chr2_4:14902703-14902722 | Msa0317240:intron | 30.0% | |
AAAAATCAATAGATCAAGGG+AGG | + | chr2_4:14902788-14902807 | Msa0317240:intron | 30.0% | |
!! | GTTTTAATCTGTTGCAGAAA+AGG | + | chr2_4:14902918-14902937 | Msa0317240:intron | 30.0% |
AACTGAAGCTAAGAAAGATA+AGG | + | chr2_4:14902987-14903006 | Msa0317240:CDS | 30.0% | |
GAGAAATGAAGTAAGTAAGA+TGG | + | chr2_4:14903173-14903192 | Msa0317240:CDS | 30.0% | |
AGAGGATCATCTTAAAAACA+AGG | + | chr2_4:14903215-14903234 | Msa0317240:CDS | 30.0% | |
AAGATTACACACAGATCAAA+AGG | + | chr2_4:14903381-14903400 | Msa0317240:CDS | 30.0% | |
GATTAAGATGTATAGAACTG+AGG | + | chr2_4:14903453-14903472 | Msa0317240:CDS | 30.0% | |
AACGCATCATTAATGGAAAT+TGG | - | chr2_4:14903489-14903508 | None:intergenic | 30.0% | |
CATTGTAAACGCATCATTAA+TGG | - | chr2_4:14903496-14903515 | None:intergenic | 30.0% | |
!! | AAGATAAGAAAGCTTTGGAA+CGG | + | chr2_4:14903599-14903618 | Msa0317240:CDS | 30.0% |
AACATAAGAAGATATATGCC+TGG | - | chr2_4:14903753-14903772 | None:intergenic | 30.0% | |
ATAATCACGAATGAGATTAG+CGG | - | chr2_4:14903959-14903978 | None:intergenic | 30.0% | |
! | CATAGGAATTTTGTATCTAC+TGG | + | chr2_4:14904055-14904074 | Msa0317240:intron | 30.0% |
GGTTTATCTATACAGTAACA+TGG | + | chr2_4:14904076-14904095 | Msa0317240:intron | 30.0% | |
ATGGAAAGATGAAAGTGATA+AGG | + | chr2_4:14904198-14904217 | Msa0317240:CDS | 30.0% | |
AGAAGAAAGAAAGATTATGC+AGG | + | chr2_4:14904243-14904262 | Msa0317240:CDS | 30.0% | |
AAAAGCAGAATCACAATTGA+AGG | + | chr2_4:14904315-14904334 | Msa0317240:CDS | 30.0% | |
!! | ATACGGTATTTATTTTTCGC+AGG | + | chr2_4:14904398-14904417 | Msa0317240:intron | 30.0% |
TTAAGTTTCGTAACGAACAA+TGG | + | chr2_4:14904525-14904544 | Msa0317240:CDS | 30.0% | |
TTCCAAAAGCCAAACATAAA+AGG | + | chr2_4:14904606-14904625 | Msa0317240:CDS | 30.0% | |
! | TCTATGTTGCCTTTTATGTT+TGG | - | chr2_4:14904618-14904637 | None:intergenic | 30.0% |
! | GGTAGAACCATATTTCATTT+TGG | - | chr2_4:14904676-14904695 | None:intergenic | 30.0% |
ACCGAAAATGTGTTGAAAAA+AGG | + | chr2_4:14904693-14904712 | Msa0317240:CDS | 30.0% | |
! | AGAAACAAATTTTCTGATGG+TGG | + | chr2_4:14904729-14904748 | Msa0317240:CDS | 30.0% |
CACCAAAGATGAAGAAATTA+AGG | + | chr2_4:14904938-14904957 | Msa0317240:intron | 30.0% | |
AGATGAAGAAATTAAGGTAC+TGG | + | chr2_4:14904944-14904963 | Msa0317240:intron | 30.0% | |
TTGTCAATCGTAGAAAATAG+TGG | + | chr2_4:14904990-14905009 | Msa0317240:intron | 30.0% | |
CATCAATAAAATCCGATGAT+AGG | + | chr2_4:14905282-14905301 | Msa0317240:CDS | 30.0% | |
GAAGTTCAAACTTCTCTAAA+AGG | + | chr2_4:14905315-14905334 | Msa0317240:CDS | 30.0% | |
CTTTATGAAGAGAAAATTGG+AGG | + | chr2_4:14905448-14905467 | Msa0317240:three_prime_UTR | 30.0% | |
ACACTTACCATCACCAAAAT+TGG | + | chr2_4:14901984-14902003 | Msa0317240:five_prime_UTR | 35.0% | |
!! | TTGGTATCCAATTTTGGTGA+TGG | - | chr2_4:14901994-14902013 | None:intergenic | 35.0% |
TCACCAAAATTGGATACCAA+AGG | + | chr2_4:14901994-14902013 | Msa0317240:five_prime_UTR | 35.0% | |
!! | TAGCATACTCCATTTGTTGT+TGG | + | chr2_4:14902041-14902060 | Msa0317240:five_prime_UTR | 35.0% |
TTATGGTAAGTGTACTGTTG+AGG | - | chr2_4:14902082-14902101 | None:intergenic | 35.0% | |
!! | TAGGTGTTCTACTTTTGTGA+TGG | - | chr2_4:14902187-14902206 | None:intergenic | 35.0% |
TCACAAAAGTAGAACACCTA+TGG | + | chr2_4:14902187-14902206 | Msa0317240:five_prime_UTR | 35.0% | |
GAAAATGGTTGTCAATGAAG+AGG | + | chr2_4:14902274-14902293 | Msa0317240:exon | 35.0% | |
TCATGCATGTAAAACACCAA+TGG | + | chr2_4:14902415-14902434 | Msa0317240:intron | 35.0% | |
! | GAGTCCATCTAATTTTCCAT+TGG | - | chr2_4:14902434-14902453 | None:intergenic | 35.0% |
CTGACACAAGACCAAAAATA+AGG | - | chr2_4:14902496-14902515 | None:intergenic | 35.0% | |
!!! | TATTTTTGGTCTTGTGTCAG+TGG | + | chr2_4:14902496-14902515 | Msa0317240:intron | 35.0% |
! | CTCTTTTCCAAGGTAACAAA+AGG | + | chr2_4:14902585-14902604 | Msa0317240:intron | 35.0% |
CTGTCAGTTTCTTGATTTCT+AGG | - | chr2_4:14903309-14903328 | None:intergenic | 35.0% | |
ATCTTAATCTCGTCTTCAAG+AGG | - | chr2_4:14903442-14903461 | None:intergenic | 35.0% | |
TCAGGAAGATAAGAAAGCTT+TGG | + | chr2_4:14903594-14903613 | Msa0317240:CDS | 35.0% | |
AAAACTTTGACCTGAAGAGA+CGG | + | chr2_4:14903716-14903735 | Msa0317240:CDS | 35.0% | |
! | TACAACTTTTCATGAACAGG+AGG | + | chr2_4:14903828-14903847 | Msa0317240:intron | 35.0% |
CCTCAAGTTCATGAATTGTT+TGG | - | chr2_4:14903912-14903931 | None:intergenic | 35.0% | |
CCAAACAATTCATGAACTTG+AGG | + | chr2_4:14903909-14903928 | Msa0317240:CDS | 35.0% | |
! | TGTTATGACGACTTGCATTT+TGG | + | chr2_4:14904021-14904040 | Msa0317240:intron | 35.0% |
! | TTTTGGACTAACTCTTGCAT+AGG | + | chr2_4:14904038-14904057 | Msa0317240:intron | 35.0% |
TAAAATTTCAGGAGGAGAAG+AGG | + | chr2_4:14904107-14904126 | Msa0317240:intron | 35.0% | |
!!! | TTTTGCTGTTCTCTCTGATA+TGG | - | chr2_4:14904299-14904318 | None:intergenic | 35.0% |
AGGCTAAAAACACTTGAAGA+AGG | + | chr2_4:14904435-14904454 | Msa0317240:CDS | 35.0% | |
AGAAGGCTTAAAGCAATTCT+CGG | + | chr2_4:14904452-14904471 | Msa0317240:CDS | 35.0% | |
TGGAGATACTGAAAATGCAT+TGG | - | chr2_4:14904484-14904503 | None:intergenic | 35.0% | |
! | TTGGAACAAAGTGTTTCCAA+CGG | - | chr2_4:14904592-14904611 | None:intergenic | 35.0% |
!!! | TGCCTTTTATGTTTGGCTTT+TGG | - | chr2_4:14904611-14904630 | None:intergenic | 35.0% |
AAAAGGCAACATAGACAGTA+TGG | + | chr2_4:14904623-14904642 | Msa0317240:CDS | 35.0% | |
!!! | TTCATTTTGGTTATGCTACC+CGG | - | chr2_4:14904663-14904682 | None:intergenic | 35.0% |
! | TTTAGAGTCTTCATCAGCAT+TGG | - | chr2_4:14904799-14904818 | None:intergenic | 35.0% |
!! | TGATTTAGAAAGCACTGATG+TGG | + | chr2_4:14904833-14904852 | Msa0317240:CDS | 35.0% |
!! | GAAAGTTGATGCATTGACAA+AGG | + | chr2_4:14905199-14905218 | Msa0317240:intron | 35.0% |
CAATAAAATCCGATGATAGG+AGG | + | chr2_4:14905285-14905304 | Msa0317240:CDS | 35.0% | |
! | TCTCAGACTCTTTAAGTTAG+TGG | - | chr2_4:14905554-14905573 | None:intergenic | 35.0% |
TGATGGTAAGTGTACTGTTG+AGG | - | chr2_4:14901977-14901996 | None:intergenic | 40.0% | |
TAAGTGTACTGTTGAGGCTA+AGG | - | chr2_4:14901971-14901990 | None:intergenic | 40.0% | |
! | ACAACATCTGGTTTGACAAG+AGG | - | chr2_4:14902302-14902321 | None:intergenic | 40.0% |
CAAACCAGATGTTGTTGTGT+TGG | + | chr2_4:14902307-14902326 | Msa0317240:CDS | 40.0% | |
ATCTCCAACACAACAACATC+TGG | - | chr2_4:14902314-14902333 | None:intergenic | 40.0% | |
! | TAGATGGACTCATTGTGTCA+AGG | + | chr2_4:14902443-14902462 | Msa0317240:intron | 40.0% |
!! | AATGAACTTGCTACATGCCA+TGG | + | chr2_4:14902943-14902962 | Msa0317240:CDS | 40.0% |
TACATGCCATGGTGAAATCA+AGG | + | chr2_4:14902954-14902973 | Msa0317240:CDS | 40.0% | |
! | TTATGGCCTTGATTTCACCA+TGG | - | chr2_4:14902963-14902982 | None:intergenic | 40.0% |
ATGGTGAAATCAAGGCCATA+AGG | + | chr2_4:14902962-14902981 | Msa0317240:CDS | 40.0% | |
TGGTGAAATCAAGGCCATAA+GGG | + | chr2_4:14902963-14902982 | Msa0317240:CDS | 40.0% | |
GAAAGATAAGGCCATAGAAG+AGG | + | chr2_4:14902999-14903018 | Msa0317240:CDS | 40.0% | |
TGCGAGACTAAGACTTAAAG+AGG | + | chr2_4:14903197-14903216 | Msa0317240:CDS | 40.0% | |
AGACGAAAAGAAAGATGCGT+TGG | + | chr2_4:14903327-14903346 | Msa0317240:CDS | 40.0% | |
TGATTCTGCAGCATATTGTG+CGG | - | chr2_4:14903353-14903372 | None:intergenic | 40.0% | |
!! | GAAGTGCTGTAATCTGTAGA+TGG | - | chr2_4:14903576-14903595 | None:intergenic | 40.0% |
TCTACAGATTACAGCACTTC+AGG | + | chr2_4:14903576-14903595 | Msa0317240:intron | 40.0% | |
ACAGGAGGAGAACAAAATCT+TGG | + | chr2_4:14903843-14903862 | Msa0317240:intron | 40.0% | |
AAATCTTGGAGAAAAGCCAC+CGG | + | chr2_4:14903857-14903876 | Msa0317240:CDS | 40.0% | |
! | CAACTTCCACAATCTTTTGC+CGG | - | chr2_4:14903879-14903898 | None:intergenic | 40.0% |
GAGGAGCTCATCTTATCAAA+TGG | + | chr2_4:14903928-14903947 | Msa0317240:CDS | 40.0% | |
CAGATTTCTGAGTTGCAAGT+AGG | + | chr2_4:14903985-14904004 | Msa0317240:intron | 40.0% | |
ACTAGAGAGGGAATTAGCAA+GGG | + | chr2_4:14904132-14904151 | Msa0317240:CDS | 40.0% | |
CAACAGAATTGCAACTGTTG+CGG | + | chr2_4:14904168-14904187 | Msa0317240:CDS | 40.0% | |
TCTTCTAACCATTGCCTAAC+AGG | - | chr2_4:14904229-14904248 | None:intergenic | 40.0% | |
AGTTTCGTAACGAACAATGG+TGG | + | chr2_4:14904528-14904547 | Msa0317240:CDS | 40.0% | |
!! | ACAATGGTGGATTGAGAAAC+AGG | + | chr2_4:14904541-14904560 | Msa0317240:CDS | 40.0% |
AATGAGATACAGGTGAACAC+AGG | + | chr2_4:14904762-14904781 | Msa0317240:CDS | 40.0% | |
CGATTGACAACTCTGATATG+AGG | - | chr2_4:14904980-14904999 | None:intergenic | 40.0% | |
! | TGATGCATTGACAAAGGCTA+TGG | + | chr2_4:14905205-14905224 | Msa0317240:CDS | 40.0% |
CAAAGGCTATGGAAGTAGAA+TGG | + | chr2_4:14905216-14905235 | Msa0317240:CDS | 40.0% | |
!! | TCTGCTTTTCCTCCTATCAT+CGG | - | chr2_4:14905297-14905316 | None:intergenic | 40.0% |
CTTCTCTGTATGTACAGAGT+TGG | - | chr2_4:14905578-14905597 | None:intergenic | 40.0% | |
!! | TGATGGAAAGTGCCCTATTG+AGG | - | chr2_4:14902170-14902189 | None:intergenic | 45.0% |
!! | TTGGTCTTGTGTCAGTGGTA+AGG | + | chr2_4:14902501-14902520 | Msa0317240:intron | 45.0% |
CTTAGCTTCAGTTGCCCTTA+TGG | - | chr2_4:14902980-14902999 | None:intergenic | 45.0% | |
GGCGTGATGACACTTTCAAA+TGG | - | chr2_4:14903421-14903440 | None:intergenic | 45.0% | |
GCTCACAAAGTCGAAAGAGT+TGG | + | chr2_4:14903621-14903640 | Msa0317240:CDS | 45.0% | |
ATCACGAATGAGATTAGCGG+TGG | - | chr2_4:14903956-14903975 | None:intergenic | 45.0% | |
CACTAGAGAGGGAATTAGCA+AGG | + | chr2_4:14904131-14904150 | Msa0317240:CDS | 45.0% | |
CGCAACAGTTGCAATTCTGT+TGG | - | chr2_4:14904170-14904189 | None:intergenic | 45.0% | |
CAACTGTTGCGGCTAATGAA+TGG | + | chr2_4:14904179-14904198 | Msa0317240:CDS | 45.0% | |
GTGATAAGGTCATGCCTGTT+AGG | + | chr2_4:14904212-14904231 | Msa0317240:CDS | 45.0% | |
TTATGCAGGCAGAGATGCAA+AGG | + | chr2_4:14904257-14904276 | Msa0317240:CDS | 45.0% | |
AGGTCTACATCACAACCAAG+AGG | + | chr2_4:14904561-14904580 | Msa0317240:CDS | 45.0% | |
TTTCCAACGGTAGATCCTCT+TGG | - | chr2_4:14904579-14904598 | None:intergenic | 45.0% | |
GCAACATAGACAGTATGGCT+GGG | + | chr2_4:14904628-14904647 | Msa0317240:CDS | 45.0% | |
! | TGGTTATGCTACCCGGTTTT+CGG | - | chr2_4:14904656-14904675 | None:intergenic | 45.0% |
!!! | TAGTAATAAATAATTTTATA+CGG | + | chr2_4:14904381-14904400 | Msa0317240:intron | 5.0% |
TGGCATTGCTTGAAGCAGAG+AGG | + | chr2_4:14903641-14903660 | Msa0317240:CDS | 50.0% | |
AGATCTCGATCCGTCTCTTC+AGG | - | chr2_4:14903729-14903748 | None:intergenic | 50.0% | |
AAGCCACCGGCAAAAGATTG+TGG | + | chr2_4:14903870-14903889 | Msa0317240:CDS | 50.0% | |
! | CTTCCACAATCTTTTGCCGG+TGG | - | chr2_4:14903876-14903895 | None:intergenic | 50.0% |
AGGAGAAGAGGACACTAGAG+AGG | + | chr2_4:14904119-14904138 | Msa0317240:CDS | 50.0% | |
GGAGAAGAGGACACTAGAGA+GGG | + | chr2_4:14904120-14904139 | Msa0317240:CDS | 50.0% | |
AGGTCATGCCTGTTAGGCAA+TGG | + | chr2_4:14904218-14904237 | Msa0317240:CDS | 50.0% | |
CGCAGGATAAACTGAAGCTG+AGG | + | chr2_4:14904415-14904434 | Msa0317240:intron | 50.0% | |
CAACCAAGAGGATCTACCGT+TGG | + | chr2_4:14904573-14904592 | Msa0317240:CDS | 50.0% | |
GGCAACATAGACAGTATGGC+TGG | + | chr2_4:14904627-14904646 | Msa0317240:CDS | 50.0% | |
TATGGCTGGGAACCGAAAAC+CGG | + | chr2_4:14904641-14904660 | Msa0317240:CDS | 50.0% | |
!! | GAAAGCACTGATGTGGTCTC+TGG | + | chr2_4:14904840-14904859 | Msa0317240:CDS | 50.0% |
ATGGCTGGGAACCGAAAACC+GGG | + | chr2_4:14904642-14904661 | Msa0317240:CDS | 55.0% | |
GAGACGGATCGAGATCTGCC+AGG | + | chr2_4:14903732-14903751 | Msa0317240:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 14901883 | 14905649 | 14901883 | ID=Msa0317240;Name=Msa0317240 |
chr2_4 | mRNA | 14901883 | 14905649 | 14901883 | ID=Msa0317240-mRNA-1;Parent=Msa0317240;Name=Msa0317240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=395|0.77|0.7|1|1|1|10|207|535 |
chr2_4 | exon | 14901883 | 14902359 | 14901883 | ID=Msa0317240-mRNA-1:exon:5585;Parent=Msa0317240-mRNA-1 |
chr2_4 | exon | 14902935 | 14903020 | 14902935 | ID=Msa0317240-mRNA-1:exon:5586;Parent=Msa0317240-mRNA-1 |
chr2_4 | exon | 14903171 | 14903236 | 14903171 | ID=Msa0317240-mRNA-1:exon:5587;Parent=Msa0317240-mRNA-1 |
chr2_4 | exon | 14903304 | 14903474 | 14903304 | ID=Msa0317240-mRNA-1:exon:5588;Parent=Msa0317240-mRNA-1 |
chr2_4 | exon | 14903583 | 14903783 | 14903583 | ID=Msa0317240-mRNA-1:exon:5589;Parent=Msa0317240-mRNA-1 |
chr2_4 | exon | 14903847 | 14904002 | 14903847 | ID=Msa0317240-mRNA-1:exon:5590;Parent=Msa0317240-mRNA-1 |
chr2_4 | exon | 14904118 | 14904336 | 14904118 | ID=Msa0317240-mRNA-1:exon:5591;Parent=Msa0317240-mRNA-1 |
chr2_4 | exon | 14904420 | 14904890 | 14904420 | ID=Msa0317240-mRNA-1:exon:5592;Parent=Msa0317240-mRNA-1 |
chr2_4 | exon | 14905200 | 14905336 | 14905200 | ID=Msa0317240-mRNA-1:exon:5593;Parent=Msa0317240-mRNA-1 |
chr2_4 | exon | 14905424 | 14905649 | 14905424 | ID=Msa0317240-mRNA-1:exon:5594;Parent=Msa0317240-mRNA-1 |
chr2_4 | five_prime_UTR | 14901883 | 14902277 | 14901883 | ID=Msa0317240-mRNA-1:five_prime_utr;Parent=Msa0317240-mRNA-1 |
chr2_4 | CDS | 14902278 | 14902359 | 14902278 | ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1 |
chr2_4 | CDS | 14902935 | 14903020 | 14902935 | ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1 |
chr2_4 | CDS | 14903171 | 14903236 | 14903171 | ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1 |
chr2_4 | CDS | 14903304 | 14903474 | 14903304 | ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1 |
chr2_4 | CDS | 14903583 | 14903783 | 14903583 | ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1 |
chr2_4 | CDS | 14903847 | 14904002 | 14903847 | ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1 |
chr2_4 | CDS | 14904118 | 14904336 | 14904118 | ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1 |
chr2_4 | CDS | 14904420 | 14904890 | 14904420 | ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1 |
chr2_4 | CDS | 14905200 | 14905336 | 14905200 | ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1 |
chr2_4 | CDS | 14905424 | 14905442 | 14905424 | ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1 |
chr2_4 | three_prime_UTR | 14905443 | 14905649 | 14905443 | ID=Msa0317240-mRNA-1:three_prime_utr;Parent=Msa0317240-mRNA-1 |
Gene Sequence |
Protein sequence |