AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0317240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317240 MtrunA17_Chr2g0290411 91.281 562 12 2 1 535 1 552 0.0 979
Msa0317240 MtrunA17_Chr4g0076251 62.653 573 153 6 6 535 19 573 0.0 637
Msa0317240 MtrunA17_Chr8g0391771 44.444 558 241 11 13 528 57 587 1.68e-134 404
Msa0317240 MtrunA17_Chr1g0161371 44.385 561 237 11 13 528 52 582 5.83e-134 402
Msa0317240 MtrunA17_Chr8g0344311 45.133 565 225 11 13 528 53 581 6.95e-132 397
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317240 AT4G17220.1 52.174 529 170 9 16 512 9 486 1.41e-151 444
Msa0317240 AT1G68060.1 45.975 559 229 13 13 526 66 596 4.30e-139 416
Msa0317240 AT1G24764.1 44.365 559 242 9 13 528 74 606 5.30e-139 416
Msa0317240 AT1G24764.3 44.365 559 242 9 13 528 133 665 1.10e-137 414
Msa0317240 AT2G01750.2 43.234 569 254 9 4 529 63 605 2.56e-133 401
Msa0317240 AT2G01750.1 43.234 569 254 9 4 529 63 605 3.36e-133 401
Msa0317240 AT1G14840.1 43.297 552 236 9 13 519 49 568 2.60e-131 395
Msa0317240 AT1G24764.2 44.259 479 198 9 93 528 1 453 1.11e-116 353
Msa0317240 AT1G14840.2 41.123 552 233 10 13 519 49 553 2.25e-116 356

Find 104 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTTTGGTCTTCTATTT+TGG 0.106408 2_4:-14902102 None:intergenic
CTGTCAGTTTCTTGATTTCT+AGG 0.120680 2_4:-14903306 None:intergenic
TTTCCTTTGGTATCCAATTT+TGG 0.142874 2_4:-14901997 None:intergenic
CTTAGCTTCAGTTGCCCTTA+TGG 0.199525 2_4:-14902977 None:intergenic
ATTCTTTATGAAGAGAAAAT+TGG 0.212662 2_4:+14905445 Msa0317240:three_prime_UTR
GGTAGAACCATATTTCATTT+TGG 0.221595 2_4:-14904673 None:intergenic
TTCCAAAAGCCAAACATAAA+AGG 0.248082 2_4:+14904606 Msa0317240:CDS
ACACTTACCATCACCAAAAT+TGG 0.257334 2_4:+14901984 Msa0317240:five_prime_UTR
GAAGTTCAAACTTCTCTAAA+AGG 0.264788 2_4:+14905315 Msa0317240:CDS
TCTTCTAACCATTGCCTAAC+AGG 0.277147 2_4:-14904226 None:intergenic
ATAGAAACTATACACGAAAA+TGG 0.289286 2_4:-14903774 None:intergenic
ATATTCGATTTATCAGCTTT+TGG 0.300457 2_4:-14904501 None:intergenic
AGCATAACCAAAATGAAATA+TGG 0.322617 2_4:+14904666 Msa0317240:CDS
TTTACCAAGAAAGAAGAAAA+TGG 0.324121 2_4:+14902259 Msa0317240:exon
CCTCAAGTTCATGAATTGTT+TGG 0.350831 2_4:-14903909 None:intergenic
TCTACAGATTACAGCACTTC+AGG 0.391041 2_4:+14903576 Msa0317240:intron
GAAAGCACTGATGTGGTCTC+TGG 0.402489 2_4:+14904840 Msa0317240:CDS
TCTCAGACTCTTTAAGTTAG+TGG 0.404657 2_4:-14905551 None:intergenic
GTGATAAGGTCATGCCTGTT+AGG 0.415652 2_4:+14904212 Msa0317240:CDS
TCAGGAAGATAAGAAAGCTT+TGG 0.418519 2_4:+14903594 Msa0317240:CDS
ACAATGGTGGATTGAGAAAC+AGG 0.418721 2_4:+14904541 Msa0317240:CDS
AAAAGGCAACATAGACAGTA+TGG 0.427289 2_4:+14904623 Msa0317240:CDS
TAGCATACTCCATTTGTTGT+TGG 0.431105 2_4:+14902041 Msa0317240:five_prime_UTR
AGATCTCGATCCGTCTCTTC+AGG 0.431500 2_4:-14903726 None:intergenic
ATCTCCAACACAACAACATC+TGG 0.433211 2_4:-14902311 None:intergenic
AAAAGCAGAATCACAATTGA+AGG 0.437230 2_4:+14904315 Msa0317240:CDS
TATGGCTGGGAACCGAAAAC+CGG 0.449172 2_4:+14904641 Msa0317240:CDS
AAGATTACACACAGATCAAA+AGG 0.452964 2_4:+14903381 Msa0317240:CDS
GAGAAATGAAGTAAGTAAGA+TGG 0.460243 2_4:+14903173 Msa0317240:CDS
ATGGTGAAATCAAGGCCATA+AGG 0.461955 2_4:+14902962 Msa0317240:CDS
ACAGGAGGAGAACAAAATCT+TGG 0.462576 2_4:+14903843 Msa0317240:intron
AGAAGGCTTAAAGCAATTCT+CGG 0.473398 2_4:+14904452 Msa0317240:CDS
GAGGAGCTCATCTTATCAAA+TGG 0.475247 2_4:+14903928 Msa0317240:CDS
CGCAACAGTTGCAATTCTGT+TGG 0.479391 2_4:-14904167 None:intergenic
CATCAATAAAATCCGATGAT+AGG 0.480394 2_4:+14905282 Msa0317240:CDS
TTTAGAGTCTTCATCAGCAT+TGG 0.483845 2_4:-14904796 None:intergenic
TGGAGATACTGAAAATGCAT+TGG 0.489587 2_4:-14904481 None:intergenic
AAAACACCAACAACAAATGA+TGG 0.495818 2_4:-14901942 None:intergenic
TCACAAAAGTAGAACACCTA+TGG 0.501557 2_4:+14902187 Msa0317240:five_prime_UTR
TAAAAGCCATCATTTGTTGT+TGG 0.502135 2_4:+14901936 Msa0317240:five_prime_UTR
GGCAACATAGACAGTATGGC+TGG 0.502574 2_4:+14904627 Msa0317240:CDS
TTTCCAACGGTAGATCCTCT+TGG 0.502837 2_4:-14904576 None:intergenic
CATTTGCAAAACAAACTCAT+AGG 0.508565 2_4:+14902338 Msa0317240:CDS
TGATGCATTGACAAAGGCTA+TGG 0.508671 2_4:+14905205 Msa0317240:CDS
CAAACCAGATGTTGTTGTGT+TGG 0.510088 2_4:+14902307 Msa0317240:CDS
ATGGAAAGATGAAAGTGATA+AGG 0.511209 2_4:+14904198 Msa0317240:CDS
CAAAGGCTATGGAAGTAGAA+TGG 0.511214 2_4:+14905216 Msa0317240:CDS
CTTTATGAAGAGAAAATTGG+AGG 0.512076 2_4:+14905448 Msa0317240:three_prime_UTR
CAACTGTTGCGGCTAATGAA+TGG 0.512914 2_4:+14904179 Msa0317240:CDS
CTTCTCTGTATGTACAGAGT+TGG 0.523530 2_4:-14905575 None:intergenic
TAAGTGTACTGTTGAGGCTA+AGG 0.523957 2_4:-14902073 None:intergenic
TACATGCCATGGTGAAATCA+AGG 0.527571 2_4:+14902954 Msa0317240:CDS
TGCGAGACTAAGACTTAAAG+AGG 0.531452 2_4:+14903197 Msa0317240:CDS
GGCGTGATGACACTTTCAAA+TGG 0.532270 2_4:-14903418 None:intergenic
AACATAAGAAGATATATGCC+TGG 0.538469 2_4:-14903750 None:intergenic
TAAAATTTCAGGAGGAGAAG+AGG 0.539106 2_4:+14904107 Msa0317240:intron
CCAAACAATTCATGAACTTG+AGG 0.539948 2_4:+14903909 Msa0317240:CDS
AACAAATGAAGTATGATCAC+TGG 0.540299 2_4:-14902226 None:intergenic
AAGCCACCGGCAAAAGATTG+TGG 0.540851 2_4:+14903870 Msa0317240:CDS
TATATATAGTATTATTCCAT+AGG 0.547203 2_4:-14902203 None:intergenic
AGAAGAAAGAAAGATTATGC+AGG 0.548152 2_4:+14904243 Msa0317240:CDS
CACTAGAGAGGGAATTAGCA+AGG 0.557388 2_4:+14904131 Msa0317240:CDS
CAACAGAATTGCAACTGTTG+CGG 0.557551 2_4:+14904168 Msa0317240:CDS
TTAAGTTTCGTAACGAACAA+TGG 0.569896 2_4:+14904525 Msa0317240:CDS
CAATAAAATCCGATGATAGG+AGG 0.573485 2_4:+14905285 Msa0317240:CDS
GAGACGGATCGAGATCTGCC+AGG 0.577223 2_4:+14903732 Msa0317240:CDS
TGGTGAAATCAAGGCCATAA+GGG 0.577785 2_4:+14902963 Msa0317240:CDS
ATCTTAATCTCGTCTTCAAG+AGG 0.579230 2_4:-14903439 None:intergenic
TGATGGAAAGTGCCCTATTG+AGG 0.579242 2_4:-14902167 None:intergenic
GAAAATGGTTGTCAATGAAG+AGG 0.581609 2_4:+14902274 Msa0317240:exon
AGACGAAAAGAAAGATGCGT+TGG 0.582689 2_4:+14903327 Msa0317240:CDS
AACTGAAGCTAAGAAAGATA+AGG 0.586496 2_4:+14902987 Msa0317240:CDS
GCTCACAAAGTCGAAAGAGT+TGG 0.587191 2_4:+14903621 Msa0317240:CDS
GAAAGATAAGGCCATAGAAG+AGG 0.588351 2_4:+14902999 Msa0317240:CDS
ACAACATCTGGTTTGACAAG+AGG 0.589315 2_4:-14902299 None:intergenic
TTATGCAGGCAGAGATGCAA+AGG 0.590511 2_4:+14904257 Msa0317240:CDS
AGGAGAAGAGGACACTAGAG+AGG 0.591941 2_4:+14904119 Msa0317240:CDS
CGCAGGATAAACTGAAGCTG+AGG 0.593606 2_4:+14904415 Msa0317240:intron
AAAACTTTGACCTGAAGAGA+CGG 0.598972 2_4:+14903716 Msa0317240:CDS
ATGGCTGGGAACCGAAAACC+GGG 0.599697 2_4:+14904642 Msa0317240:CDS
GAAAGTTGATGCATTGACAA+AGG 0.609150 2_4:+14905199 Msa0317240:intron
AGGTCATGCCTGTTAGGCAA+TGG 0.612732 2_4:+14904218 Msa0317240:CDS
TTATGGCCTTGATTTCACCA+TGG 0.621711 2_4:-14902960 None:intergenic
TCACCAAAATTGGATACCAA+AGG 0.622755 2_4:+14901994 Msa0317240:five_prime_UTR
TAACCAAAATAGAAGACCAA+AGG 0.624121 2_4:+14902099 Msa0317240:five_prime_UTR
AAGATAAGAAAGCTTTGGAA+CGG 0.627349 2_4:+14903599 Msa0317240:CDS
TGATTTAGAAAGCACTGATG+TGG 0.627887 2_4:+14904833 Msa0317240:CDS
AATGAACTTGCTACATGCCA+TGG 0.628116 2_4:+14902943 Msa0317240:CDS
AGTTTCGTAACGAACAATGG+TGG 0.630214 2_4:+14904528 Msa0317240:CDS
CAACCAAGAGGATCTACCGT+TGG 0.630663 2_4:+14904573 Msa0317240:CDS
ATAATCACGAATGAGATTAG+CGG 0.637427 2_4:-14903956 None:intergenic
AAATCTTGGAGAAAAGCCAC+CGG 0.637665 2_4:+14903857 Msa0317240:CDS
TTATGGTAAGTGTACTGTTG+AGG 0.644306 2_4:-14902079 None:intergenic
GCAACATAGACAGTATGGCT+GGG 0.648667 2_4:+14904628 Msa0317240:CDS
TGGCATTGCTTGAAGCAGAG+AGG 0.652208 2_4:+14903641 Msa0317240:CDS
TTGGAACAAAGTGTTTCCAA+CGG 0.656799 2_4:-14904589 None:intergenic
ATCACGAATGAGATTAGCGG+TGG 0.659965 2_4:-14903953 None:intergenic
GGAGAAGAGGACACTAGAGA+GGG 0.660251 2_4:+14904120 Msa0317240:CDS
AATGAGATACAGGTGAACAC+AGG 0.676366 2_4:+14904762 Msa0317240:CDS
TGATGGTAAGTGTACTGTTG+AGG 0.679865 2_4:-14901974 None:intergenic
ACTAGAGAGGGAATTAGCAA+GGG 0.681716 2_4:+14904132 Msa0317240:CDS
GATTAAGATGTATAGAACTG+AGG 0.694125 2_4:+14903453 Msa0317240:CDS
AGGTCTACATCACAACCAAG+AGG 0.700161 2_4:+14904561 Msa0317240:CDS
TGATTCTGCAGCATATTGTG+CGG 0.724358 2_4:-14903350 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGGTATTTAAAAAAATAA+AGG + chr2_4:14902603-14902622 Msa0317240:intron 10.0%
!!! TAATTTATTTTTTTCTATGT+AGG + chr2_4:14904338-14904357 Msa0317240:intron 10.0%
!!! TATATAAAGTATTTTTCCTT+TGG - chr2_4:14902118-14902137 None:intergenic 15.0%
!! TATATATAGTATTATTCCAT+AGG - chr2_4:14902206-14902225 None:intergenic 15.0%
!! TTAAAAAAATCAATAGATCA+AGG + chr2_4:14902784-14902803 Msa0317240:intron 15.0%
!! TAAAAAAATCAATAGATCAA+GGG + chr2_4:14902785-14902804 Msa0317240:intron 15.0%
!!! CTATTTTTACTCCTTATTTT+TGG + chr2_4:14902482-14902501 Msa0317240:intron 20.0%
!!! TTTCTTTTACACATTAACAA+TGG - chr2_4:14902648-14902667 None:intergenic 20.0%
!! AACAAATAATGTTCTAACTT+TGG - chr2_4:14903079-14903098 None:intergenic 20.0%
!!! CATAGAATTTATCATTGTTT+TGG - chr2_4:14903252-14903271 None:intergenic 20.0%
!!! TTTAGTTCTATGTAACAAAA+GGG - chr2_4:14905147-14905166 None:intergenic 20.0%
!!! AATTTTTTATAGCATTGTTC+AGG - chr2_4:14905397-14905416 None:intergenic 20.0%
!! ATTCTTTATGAAGAGAAAAT+TGG + chr2_4:14905445-14905464 Msa0317240:three_prime_UTR 20.0%
!! ATACTATAGTGTTTTTCCTT+TGG - chr2_4:14902013-14902032 None:intergenic 25.0%
! ACAAAAATACCAACAACAAA+TGG - chr2_4:14902053-14902072 None:intergenic 25.0%
! TTTACCAAGAAAGAAGAAAA+TGG + chr2_4:14902259-14902278 Msa0317240:exon 25.0%
! ATTTGCTTCATCATTTGATT+AGG + chr2_4:14902391-14902410 Msa0317240:intron 25.0%
!!! GCACTTTTTTTTTTATCGTA+AGG + chr2_4:14902542-14902561 Msa0317240:intron 25.0%
!! TTAAATACCTTTTGTTACCT+TGG - chr2_4:14902595-14902614 None:intergenic 25.0%
! AACTAGTGACAATTTATTCA+TGG + chr2_4:14902727-14902746 Msa0317240:intron 25.0%
!! ATCACAGTTTTCTTTGAATA+TGG + chr2_4:14902844-14902863 Msa0317240:intron 25.0%
! AAAAACAAATACCTCTTCTA+TGG - chr2_4:14903013-14903032 None:intergenic 25.0%
! GTTAGTGTTATCATCTTTAA+AGG - chr2_4:14903546-14903565 None:intergenic 25.0%
! ATAGAAACTATACACGAAAA+TGG - chr2_4:14903777-14903796 None:intergenic 25.0%
! TGTATAGTTTCTATATCGAA+CGG + chr2_4:14903783-14903802 Msa0317240:intron 25.0%
!! TTATACAACTTTTCATGAAC+AGG + chr2_4:14903825-14903844 Msa0317240:intron 25.0%
!!! TGGTTTTAGCATAAAATTTC+AGG + chr2_4:14904096-14904115 Msa0317240:intron 25.0%
!! TTTTAGCATAAAATTTCAGG+AGG + chr2_4:14904099-14904118 Msa0317240:intron 25.0%
!! ATATTCGATTTATCAGCTTT+TGG - chr2_4:14904504-14904523 None:intergenic 25.0%
! AGCATAACCAAAATGAAATA+TGG + chr2_4:14904666-14904685 Msa0317240:CDS 25.0%
!!! ACCTTTTTTCAACACATTTT+CGG - chr2_4:14904697-14904716 None:intergenic 25.0%
!! ATGTGTTGAAAAAAGGTATA+TGG + chr2_4:14904700-14904719 Msa0317240:CDS 25.0%
!! TGTGTTGAAAAAAGGTATAT+GGG + chr2_4:14904701-14904720 Msa0317240:CDS 25.0%
!! TCAAGAAACAAATTTTCTGA+TGG + chr2_4:14904726-14904745 Msa0317240:CDS 25.0%
! TGAAAAAGAAAATGAGATAC+AGG + chr2_4:14904752-14904771 Msa0317240:CDS 25.0%
! AAAAAGAAGTCATCAATTTG+AGG + chr2_4:14904883-14904902 Msa0317240:intron 25.0%
! TACCTTAATTTCTTCATCTT+TGG - chr2_4:14904943-14904962 None:intergenic 25.0%
! CAAAAAAAGAAGTCAGATAA+CGG - chr2_4:14905061-14905080 None:intergenic 25.0%
!!! CTTTAGTTCTATGTAACAAA+AGG - chr2_4:14905148-14905167 None:intergenic 25.0%
! AGGTTAACTATAGAAGTAAA+AGG - chr2_4:14905377-14905396 None:intergenic 25.0%
! ATGCTATAAAAAATTACTGC+AGG + chr2_4:14905402-14905421 Msa0317240:intron 25.0%
! TGCTATAAAAAATTACTGCA+GGG + chr2_4:14905403-14905422 Msa0317240:intron 25.0%
!! TAAAAGCCATCATTTGTTGT+TGG + chr2_4:14901936-14901955 Msa0317240:five_prime_UTR 30.0%
AAAACACCAACAACAAATGA+TGG - chr2_4:14901945-14901964 None:intergenic 30.0%
! TTTCCTTTGGTATCCAATTT+TGG - chr2_4:14902000-14902019 None:intergenic 30.0%
!!! TTGGTCTTCTATTTTGGTTA+TGG - chr2_4:14902099-14902118 None:intergenic 30.0%
TAACCAAAATAGAAGACCAA+AGG + chr2_4:14902099-14902118 Msa0317240:five_prime_UTR 30.0%
!! TTTCCTTTGGTCTTCTATTT+TGG - chr2_4:14902105-14902124 None:intergenic 30.0%
! TTTTTGTACTTAGCCTCAAT+AGG + chr2_4:14902154-14902173 Msa0317240:five_prime_UTR 30.0%
! TTTTGTACTTAGCCTCAATA+GGG + chr2_4:14902155-14902174 Msa0317240:five_prime_UTR 30.0%
AACAAATGAAGTATGATCAC+TGG - chr2_4:14902229-14902248 None:intergenic 30.0%
! ACAACCATTTTCTTCTTTCT+TGG - chr2_4:14902266-14902285 None:intergenic 30.0%
CATTTGCAAAACAAACTCAT+AGG + chr2_4:14902338-14902357 Msa0317240:CDS 30.0%
AACACCAATGGAAAATTAGA+TGG + chr2_4:14902427-14902446 Msa0317240:intron 30.0%
! TTTAAGTGAACTCTTTTCCA+AGG + chr2_4:14902575-14902594 Msa0317240:intron 30.0%
! CTTTTACACATTAACAATGG+TGG - chr2_4:14902645-14902664 None:intergenic 30.0%
TCATGACTAAAAAGTGATAG+TGG + chr2_4:14902703-14902722 Msa0317240:intron 30.0%
AAAAATCAATAGATCAAGGG+AGG + chr2_4:14902788-14902807 Msa0317240:intron 30.0%
!! GTTTTAATCTGTTGCAGAAA+AGG + chr2_4:14902918-14902937 Msa0317240:intron 30.0%
AACTGAAGCTAAGAAAGATA+AGG + chr2_4:14902987-14903006 Msa0317240:CDS 30.0%
GAGAAATGAAGTAAGTAAGA+TGG + chr2_4:14903173-14903192 Msa0317240:CDS 30.0%
AGAGGATCATCTTAAAAACA+AGG + chr2_4:14903215-14903234 Msa0317240:CDS 30.0%
AAGATTACACACAGATCAAA+AGG + chr2_4:14903381-14903400 Msa0317240:CDS 30.0%
GATTAAGATGTATAGAACTG+AGG + chr2_4:14903453-14903472 Msa0317240:CDS 30.0%
AACGCATCATTAATGGAAAT+TGG - chr2_4:14903489-14903508 None:intergenic 30.0%
CATTGTAAACGCATCATTAA+TGG - chr2_4:14903496-14903515 None:intergenic 30.0%
!! AAGATAAGAAAGCTTTGGAA+CGG + chr2_4:14903599-14903618 Msa0317240:CDS 30.0%
AACATAAGAAGATATATGCC+TGG - chr2_4:14903753-14903772 None:intergenic 30.0%
ATAATCACGAATGAGATTAG+CGG - chr2_4:14903959-14903978 None:intergenic 30.0%
! CATAGGAATTTTGTATCTAC+TGG + chr2_4:14904055-14904074 Msa0317240:intron 30.0%
GGTTTATCTATACAGTAACA+TGG + chr2_4:14904076-14904095 Msa0317240:intron 30.0%
ATGGAAAGATGAAAGTGATA+AGG + chr2_4:14904198-14904217 Msa0317240:CDS 30.0%
AGAAGAAAGAAAGATTATGC+AGG + chr2_4:14904243-14904262 Msa0317240:CDS 30.0%
AAAAGCAGAATCACAATTGA+AGG + chr2_4:14904315-14904334 Msa0317240:CDS 30.0%
!! ATACGGTATTTATTTTTCGC+AGG + chr2_4:14904398-14904417 Msa0317240:intron 30.0%
TTAAGTTTCGTAACGAACAA+TGG + chr2_4:14904525-14904544 Msa0317240:CDS 30.0%
TTCCAAAAGCCAAACATAAA+AGG + chr2_4:14904606-14904625 Msa0317240:CDS 30.0%
! TCTATGTTGCCTTTTATGTT+TGG - chr2_4:14904618-14904637 None:intergenic 30.0%
! GGTAGAACCATATTTCATTT+TGG - chr2_4:14904676-14904695 None:intergenic 30.0%
ACCGAAAATGTGTTGAAAAA+AGG + chr2_4:14904693-14904712 Msa0317240:CDS 30.0%
! AGAAACAAATTTTCTGATGG+TGG + chr2_4:14904729-14904748 Msa0317240:CDS 30.0%
CACCAAAGATGAAGAAATTA+AGG + chr2_4:14904938-14904957 Msa0317240:intron 30.0%
AGATGAAGAAATTAAGGTAC+TGG + chr2_4:14904944-14904963 Msa0317240:intron 30.0%
TTGTCAATCGTAGAAAATAG+TGG + chr2_4:14904990-14905009 Msa0317240:intron 30.0%
CATCAATAAAATCCGATGAT+AGG + chr2_4:14905282-14905301 Msa0317240:CDS 30.0%
GAAGTTCAAACTTCTCTAAA+AGG + chr2_4:14905315-14905334 Msa0317240:CDS 30.0%
CTTTATGAAGAGAAAATTGG+AGG + chr2_4:14905448-14905467 Msa0317240:three_prime_UTR 30.0%
ACACTTACCATCACCAAAAT+TGG + chr2_4:14901984-14902003 Msa0317240:five_prime_UTR 35.0%
!! TTGGTATCCAATTTTGGTGA+TGG - chr2_4:14901994-14902013 None:intergenic 35.0%
TCACCAAAATTGGATACCAA+AGG + chr2_4:14901994-14902013 Msa0317240:five_prime_UTR 35.0%
!! TAGCATACTCCATTTGTTGT+TGG + chr2_4:14902041-14902060 Msa0317240:five_prime_UTR 35.0%
TTATGGTAAGTGTACTGTTG+AGG - chr2_4:14902082-14902101 None:intergenic 35.0%
!! TAGGTGTTCTACTTTTGTGA+TGG - chr2_4:14902187-14902206 None:intergenic 35.0%
TCACAAAAGTAGAACACCTA+TGG + chr2_4:14902187-14902206 Msa0317240:five_prime_UTR 35.0%
GAAAATGGTTGTCAATGAAG+AGG + chr2_4:14902274-14902293 Msa0317240:exon 35.0%
TCATGCATGTAAAACACCAA+TGG + chr2_4:14902415-14902434 Msa0317240:intron 35.0%
! GAGTCCATCTAATTTTCCAT+TGG - chr2_4:14902434-14902453 None:intergenic 35.0%
CTGACACAAGACCAAAAATA+AGG - chr2_4:14902496-14902515 None:intergenic 35.0%
!!! TATTTTTGGTCTTGTGTCAG+TGG + chr2_4:14902496-14902515 Msa0317240:intron 35.0%
! CTCTTTTCCAAGGTAACAAA+AGG + chr2_4:14902585-14902604 Msa0317240:intron 35.0%
CTGTCAGTTTCTTGATTTCT+AGG - chr2_4:14903309-14903328 None:intergenic 35.0%
ATCTTAATCTCGTCTTCAAG+AGG - chr2_4:14903442-14903461 None:intergenic 35.0%
TCAGGAAGATAAGAAAGCTT+TGG + chr2_4:14903594-14903613 Msa0317240:CDS 35.0%
AAAACTTTGACCTGAAGAGA+CGG + chr2_4:14903716-14903735 Msa0317240:CDS 35.0%
! TACAACTTTTCATGAACAGG+AGG + chr2_4:14903828-14903847 Msa0317240:intron 35.0%
CCTCAAGTTCATGAATTGTT+TGG - chr2_4:14903912-14903931 None:intergenic 35.0%
CCAAACAATTCATGAACTTG+AGG + chr2_4:14903909-14903928 Msa0317240:CDS 35.0%
! TGTTATGACGACTTGCATTT+TGG + chr2_4:14904021-14904040 Msa0317240:intron 35.0%
! TTTTGGACTAACTCTTGCAT+AGG + chr2_4:14904038-14904057 Msa0317240:intron 35.0%
TAAAATTTCAGGAGGAGAAG+AGG + chr2_4:14904107-14904126 Msa0317240:intron 35.0%
!!! TTTTGCTGTTCTCTCTGATA+TGG - chr2_4:14904299-14904318 None:intergenic 35.0%
AGGCTAAAAACACTTGAAGA+AGG + chr2_4:14904435-14904454 Msa0317240:CDS 35.0%
AGAAGGCTTAAAGCAATTCT+CGG + chr2_4:14904452-14904471 Msa0317240:CDS 35.0%
TGGAGATACTGAAAATGCAT+TGG - chr2_4:14904484-14904503 None:intergenic 35.0%
! TTGGAACAAAGTGTTTCCAA+CGG - chr2_4:14904592-14904611 None:intergenic 35.0%
!!! TGCCTTTTATGTTTGGCTTT+TGG - chr2_4:14904611-14904630 None:intergenic 35.0%
AAAAGGCAACATAGACAGTA+TGG + chr2_4:14904623-14904642 Msa0317240:CDS 35.0%
!!! TTCATTTTGGTTATGCTACC+CGG - chr2_4:14904663-14904682 None:intergenic 35.0%
! TTTAGAGTCTTCATCAGCAT+TGG - chr2_4:14904799-14904818 None:intergenic 35.0%
!! TGATTTAGAAAGCACTGATG+TGG + chr2_4:14904833-14904852 Msa0317240:CDS 35.0%
!! GAAAGTTGATGCATTGACAA+AGG + chr2_4:14905199-14905218 Msa0317240:intron 35.0%
CAATAAAATCCGATGATAGG+AGG + chr2_4:14905285-14905304 Msa0317240:CDS 35.0%
! TCTCAGACTCTTTAAGTTAG+TGG - chr2_4:14905554-14905573 None:intergenic 35.0%
TGATGGTAAGTGTACTGTTG+AGG - chr2_4:14901977-14901996 None:intergenic 40.0%
TAAGTGTACTGTTGAGGCTA+AGG - chr2_4:14901971-14901990 None:intergenic 40.0%
! ACAACATCTGGTTTGACAAG+AGG - chr2_4:14902302-14902321 None:intergenic 40.0%
CAAACCAGATGTTGTTGTGT+TGG + chr2_4:14902307-14902326 Msa0317240:CDS 40.0%
ATCTCCAACACAACAACATC+TGG - chr2_4:14902314-14902333 None:intergenic 40.0%
! TAGATGGACTCATTGTGTCA+AGG + chr2_4:14902443-14902462 Msa0317240:intron 40.0%
!! AATGAACTTGCTACATGCCA+TGG + chr2_4:14902943-14902962 Msa0317240:CDS 40.0%
TACATGCCATGGTGAAATCA+AGG + chr2_4:14902954-14902973 Msa0317240:CDS 40.0%
! TTATGGCCTTGATTTCACCA+TGG - chr2_4:14902963-14902982 None:intergenic 40.0%
ATGGTGAAATCAAGGCCATA+AGG + chr2_4:14902962-14902981 Msa0317240:CDS 40.0%
TGGTGAAATCAAGGCCATAA+GGG + chr2_4:14902963-14902982 Msa0317240:CDS 40.0%
GAAAGATAAGGCCATAGAAG+AGG + chr2_4:14902999-14903018 Msa0317240:CDS 40.0%
TGCGAGACTAAGACTTAAAG+AGG + chr2_4:14903197-14903216 Msa0317240:CDS 40.0%
AGACGAAAAGAAAGATGCGT+TGG + chr2_4:14903327-14903346 Msa0317240:CDS 40.0%
TGATTCTGCAGCATATTGTG+CGG - chr2_4:14903353-14903372 None:intergenic 40.0%
!! GAAGTGCTGTAATCTGTAGA+TGG - chr2_4:14903576-14903595 None:intergenic 40.0%
TCTACAGATTACAGCACTTC+AGG + chr2_4:14903576-14903595 Msa0317240:intron 40.0%
ACAGGAGGAGAACAAAATCT+TGG + chr2_4:14903843-14903862 Msa0317240:intron 40.0%
AAATCTTGGAGAAAAGCCAC+CGG + chr2_4:14903857-14903876 Msa0317240:CDS 40.0%
! CAACTTCCACAATCTTTTGC+CGG - chr2_4:14903879-14903898 None:intergenic 40.0%
GAGGAGCTCATCTTATCAAA+TGG + chr2_4:14903928-14903947 Msa0317240:CDS 40.0%
CAGATTTCTGAGTTGCAAGT+AGG + chr2_4:14903985-14904004 Msa0317240:intron 40.0%
ACTAGAGAGGGAATTAGCAA+GGG + chr2_4:14904132-14904151 Msa0317240:CDS 40.0%
CAACAGAATTGCAACTGTTG+CGG + chr2_4:14904168-14904187 Msa0317240:CDS 40.0%
TCTTCTAACCATTGCCTAAC+AGG - chr2_4:14904229-14904248 None:intergenic 40.0%
AGTTTCGTAACGAACAATGG+TGG + chr2_4:14904528-14904547 Msa0317240:CDS 40.0%
!! ACAATGGTGGATTGAGAAAC+AGG + chr2_4:14904541-14904560 Msa0317240:CDS 40.0%
AATGAGATACAGGTGAACAC+AGG + chr2_4:14904762-14904781 Msa0317240:CDS 40.0%
CGATTGACAACTCTGATATG+AGG - chr2_4:14904980-14904999 None:intergenic 40.0%
! TGATGCATTGACAAAGGCTA+TGG + chr2_4:14905205-14905224 Msa0317240:CDS 40.0%
CAAAGGCTATGGAAGTAGAA+TGG + chr2_4:14905216-14905235 Msa0317240:CDS 40.0%
!! TCTGCTTTTCCTCCTATCAT+CGG - chr2_4:14905297-14905316 None:intergenic 40.0%
CTTCTCTGTATGTACAGAGT+TGG - chr2_4:14905578-14905597 None:intergenic 40.0%
!! TGATGGAAAGTGCCCTATTG+AGG - chr2_4:14902170-14902189 None:intergenic 45.0%
!! TTGGTCTTGTGTCAGTGGTA+AGG + chr2_4:14902501-14902520 Msa0317240:intron 45.0%
CTTAGCTTCAGTTGCCCTTA+TGG - chr2_4:14902980-14902999 None:intergenic 45.0%
GGCGTGATGACACTTTCAAA+TGG - chr2_4:14903421-14903440 None:intergenic 45.0%
GCTCACAAAGTCGAAAGAGT+TGG + chr2_4:14903621-14903640 Msa0317240:CDS 45.0%
ATCACGAATGAGATTAGCGG+TGG - chr2_4:14903956-14903975 None:intergenic 45.0%
CACTAGAGAGGGAATTAGCA+AGG + chr2_4:14904131-14904150 Msa0317240:CDS 45.0%
CGCAACAGTTGCAATTCTGT+TGG - chr2_4:14904170-14904189 None:intergenic 45.0%
CAACTGTTGCGGCTAATGAA+TGG + chr2_4:14904179-14904198 Msa0317240:CDS 45.0%
GTGATAAGGTCATGCCTGTT+AGG + chr2_4:14904212-14904231 Msa0317240:CDS 45.0%
TTATGCAGGCAGAGATGCAA+AGG + chr2_4:14904257-14904276 Msa0317240:CDS 45.0%
AGGTCTACATCACAACCAAG+AGG + chr2_4:14904561-14904580 Msa0317240:CDS 45.0%
TTTCCAACGGTAGATCCTCT+TGG - chr2_4:14904579-14904598 None:intergenic 45.0%
GCAACATAGACAGTATGGCT+GGG + chr2_4:14904628-14904647 Msa0317240:CDS 45.0%
! TGGTTATGCTACCCGGTTTT+CGG - chr2_4:14904656-14904675 None:intergenic 45.0%
!!! TAGTAATAAATAATTTTATA+CGG + chr2_4:14904381-14904400 Msa0317240:intron 5.0%
TGGCATTGCTTGAAGCAGAG+AGG + chr2_4:14903641-14903660 Msa0317240:CDS 50.0%
AGATCTCGATCCGTCTCTTC+AGG - chr2_4:14903729-14903748 None:intergenic 50.0%
AAGCCACCGGCAAAAGATTG+TGG + chr2_4:14903870-14903889 Msa0317240:CDS 50.0%
! CTTCCACAATCTTTTGCCGG+TGG - chr2_4:14903876-14903895 None:intergenic 50.0%
AGGAGAAGAGGACACTAGAG+AGG + chr2_4:14904119-14904138 Msa0317240:CDS 50.0%
GGAGAAGAGGACACTAGAGA+GGG + chr2_4:14904120-14904139 Msa0317240:CDS 50.0%
AGGTCATGCCTGTTAGGCAA+TGG + chr2_4:14904218-14904237 Msa0317240:CDS 50.0%
CGCAGGATAAACTGAAGCTG+AGG + chr2_4:14904415-14904434 Msa0317240:intron 50.0%
CAACCAAGAGGATCTACCGT+TGG + chr2_4:14904573-14904592 Msa0317240:CDS 50.0%
GGCAACATAGACAGTATGGC+TGG + chr2_4:14904627-14904646 Msa0317240:CDS 50.0%
TATGGCTGGGAACCGAAAAC+CGG + chr2_4:14904641-14904660 Msa0317240:CDS 50.0%
!! GAAAGCACTGATGTGGTCTC+TGG + chr2_4:14904840-14904859 Msa0317240:CDS 50.0%
ATGGCTGGGAACCGAAAACC+GGG + chr2_4:14904642-14904661 Msa0317240:CDS 55.0%
GAGACGGATCGAGATCTGCC+AGG + chr2_4:14903732-14903751 Msa0317240:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 14901883 14905649 14901883 ID=Msa0317240;Name=Msa0317240
chr2_4 mRNA 14901883 14905649 14901883 ID=Msa0317240-mRNA-1;Parent=Msa0317240;Name=Msa0317240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=395|0.77|0.7|1|1|1|10|207|535
chr2_4 exon 14901883 14902359 14901883 ID=Msa0317240-mRNA-1:exon:5585;Parent=Msa0317240-mRNA-1
chr2_4 exon 14902935 14903020 14902935 ID=Msa0317240-mRNA-1:exon:5586;Parent=Msa0317240-mRNA-1
chr2_4 exon 14903171 14903236 14903171 ID=Msa0317240-mRNA-1:exon:5587;Parent=Msa0317240-mRNA-1
chr2_4 exon 14903304 14903474 14903304 ID=Msa0317240-mRNA-1:exon:5588;Parent=Msa0317240-mRNA-1
chr2_4 exon 14903583 14903783 14903583 ID=Msa0317240-mRNA-1:exon:5589;Parent=Msa0317240-mRNA-1
chr2_4 exon 14903847 14904002 14903847 ID=Msa0317240-mRNA-1:exon:5590;Parent=Msa0317240-mRNA-1
chr2_4 exon 14904118 14904336 14904118 ID=Msa0317240-mRNA-1:exon:5591;Parent=Msa0317240-mRNA-1
chr2_4 exon 14904420 14904890 14904420 ID=Msa0317240-mRNA-1:exon:5592;Parent=Msa0317240-mRNA-1
chr2_4 exon 14905200 14905336 14905200 ID=Msa0317240-mRNA-1:exon:5593;Parent=Msa0317240-mRNA-1
chr2_4 exon 14905424 14905649 14905424 ID=Msa0317240-mRNA-1:exon:5594;Parent=Msa0317240-mRNA-1
chr2_4 five_prime_UTR 14901883 14902277 14901883 ID=Msa0317240-mRNA-1:five_prime_utr;Parent=Msa0317240-mRNA-1
chr2_4 CDS 14902278 14902359 14902278 ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1
chr2_4 CDS 14902935 14903020 14902935 ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1
chr2_4 CDS 14903171 14903236 14903171 ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1
chr2_4 CDS 14903304 14903474 14903304 ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1
chr2_4 CDS 14903583 14903783 14903583 ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1
chr2_4 CDS 14903847 14904002 14903847 ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1
chr2_4 CDS 14904118 14904336 14904118 ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1
chr2_4 CDS 14904420 14904890 14904420 ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1
chr2_4 CDS 14905200 14905336 14905200 ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1
chr2_4 CDS 14905424 14905442 14905424 ID=Msa0317240-mRNA-1:cds;Parent=Msa0317240-mRNA-1
chr2_4 three_prime_UTR 14905443 14905649 14905443 ID=Msa0317240-mRNA-1:three_prime_utr;Parent=Msa0317240-mRNA-1
Gene Sequence

>Msa0317240

ATGGTTGTCAATGAAGAGGTTCCTCTTGTCAAACCAGATGTTGTTGTGTTGGAGATTGATCATTTGCAAAACAAACTCATAGAAAAGGTTAATGAACTTGCTACATGCCATGGTGAAATCAAGGCCATAAGGGCAACTGAAGCTAAGAAAGATAAGGCCATAGAAGAGCTGAGAAATGAAGTAAGTAAGATGGATGCGAGACTAAGACTTAAAGAGGATCATCTTAAAAACAAGAACCTAGAAATCAAGAAACTGACAGACGAAAAGAAAGATGCGTTGGCCGCACAATATGCTGCAGAATCAGCACTTAGAAGATTACACACAGATCAAAAGGAAGAAGATTTTTATCCATTTGAAAGTGTCATCACGCCTCTTGAAGACGAGATTAAGATGTATAGAACTGAGATTACAGCACTTCAGGAAGATAAGAAAGCTTTGGAACGGCTCACAAAGTCGAAAGAGTTGGCATTGCTTGAAGCAGAGAGGATTTTACGAAGTGCACTAGAGAGAGCTTTGATAGTCGAAGAAGTTCAGAATGAAAACTTTGACCTGAAGAGACGGATCGAGATCTGCCAGGCATATATCTTCTTATGTTTCCATTTTCGTGAGGAGAACAAAATCTTGGAGAAAAGCCACCGGCAAAAGATTGTGGAAGTTGAGAAACTTAGCCAAACAATTCATGAACTTGAGGAGCTCATCTTATCAAATGGAGCCACCGCTAATCTCATTCGTGATTATAAGCGACAGATTTCTGAGTTGCAAGAGGAGAAGAGGACACTAGAGAGGGAATTAGCAAGGGTAAAAGTTTCTGCCAACAGAATTGCAACTGTTGCGGCTAATGAATGGAAAGATGAAAGTGATAAGGTCATGCCTGTTAGGCAATGGTTAGAAGAAAGAAAGATTATGCAGGCAGAGATGCAAAGGTTGAAAGAAAAGCTTGCCATATCAGAGAGAACAGCAAAAGCAGAATCACAATTGAAGGATAAACTGAAGCTGAGGCTAAAAACACTTGAAGAAGGCTTAAAGCAATTCTCGGTCAATTCCAATGCATTTTCAGTATCTCCAAAAGCTGATAAATCGAATATCTTAAGTTTCGTAACGAACAATGGTGGATTGAGAAACAGGTCTACATCACAACCAAGAGGATCTACCGTTGGAAACACTTTGTTCCAAAAGCCAAACATAAAAGGCAACATAGACAGTATGGCTGGGAACCGAAAACCGGGTAGCATAACCAAAATGAAATATGGTTCTACCGAAAATGTGTTGAAAAAAGGTATATGGGCGTCAAGAAACAAATTTTCTGATGGTGGTGAAAAAGAAAATGAGATACAGGTGAACACAGGCAGTGTTAAAACCAATGCTGATGAAGACTCTAAAAGTAATAGCAGCAATGATTTAGAAAGCACTGATGTGGTCTCTGGATTTTTATATGATAAGCTTCAAAAAGAAAAAGTTGATGCATTGACAAAGGCTATGGAAGTAGAATGGAAAAAAATGAAAAGAGAAATAGCTGCAAGAGAGAAAGAAGTTGCATCAATAAAATCCGATGATAGGAGGAAAAGCAGAAGTTCAAACTTCTCTAAAAGGGTGATGAAAGAACATTGA

Protein sequence

>Msa0317240

MVVNEEVPLVKPDVVVLEIDHLQNKLIEKVNELATCHGEIKAIRATEAKKDKAIEELRNEVSKMDARLRLKEDHLKNKNLEIKKLTDEKKDALAAQYAAESALRRLHTDQKEEDFYPFESVITPLEDEIKMYRTEITALQEDKKALERLTKSKELALLEAERILRSALERALIVEEVQNENFDLKRRIEICQAYIFLCFHFREENKILEKSHRQKIVEVEKLSQTIHELEELILSNGATANLIRDYKRQISELQEEKRTLERELARVKVSANRIATVAANEWKDESDKVMPVRQWLEERKIMQAEMQRLKEKLAISERTAKAESQLKDKLKLRLKTLEEGLKQFSVNSNAFSVSPKADKSNILSFVTNNGGLRNRSTSQPRGSTVGNTLFQKPNIKGNIDSMAGNRKPGSITKMKYGSTENVLKKGIWASRNKFSDGGEKENEIQVNTGSVKTNADEDSKSNSSNDLESTDVVSGFLYDKLQKEKVDALTKAMEVEWKKMKREIAAREKEVASIKSDDRRKSRSSNFSKRVMKEH*