Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447210 | sp|Q8GYX3|MP705_ARATH | 53.750 | 480 | 166 | 8 | 16 | 490 | 9 | 437 | 2.11e-145 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447210 | A0A072V6K1 | 95.519 | 491 | 12 | 1 | 1 | 491 | 1 | 481 | 0.0 | 934 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048010 | Msa1447210 | 0.998597 | 5.609111e-270 | -8.615850e-47 |
| Msa0141420 | Msa1447210 | 0.993282 | 1.137825e-198 | -8.615850e-47 |
| Msa0197880 | Msa1447210 | 0.807199 | 5.679286e-50 | -8.615850e-47 |
| Msa0239650 | Msa1447210 | 0.997164 | 6.602633e-238 | -8.615850e-47 |
| Msa0277650 | Msa1447210 | 0.909936 | 3.280255e-82 | -8.615850e-47 |
| Msa0317240 | Msa1447210 | 0.908568 | 1.483713e-81 | -8.615850e-47 |
| Msa1117910 | Msa1447210 | 0.816421 | 5.579196e-52 | -8.615850e-47 |
| Msa0527610 | Msa1447210 | 0.902691 | 7.485208e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447210 | MtrunA17_Chr2g0290411 | 95.519 | 491 | 12 | 1 | 1 | 491 | 1 | 481 | 0.0 | 934 |
| Msa1447210 | MtrunA17_Chr4g0076251 | 65.070 | 501 | 142 | 4 | 6 | 491 | 19 | 501 | 0.0 | 593 |
| Msa1447210 | MtrunA17_Chr8g0391771 | 45.749 | 494 | 226 | 10 | 13 | 491 | 57 | 523 | 1.35e-125 | 379 |
| Msa1447210 | MtrunA17_Chr1g0161371 | 45.473 | 497 | 223 | 10 | 13 | 491 | 52 | 518 | 3.74e-124 | 375 |
| Msa1447210 | MtrunA17_Chr8g0344311 | 46.307 | 501 | 211 | 10 | 13 | 491 | 53 | 517 | 1.57e-122 | 371 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447210 | AT4G17220.1 | 53.750 | 480 | 166 | 8 | 16 | 490 | 9 | 437 | 2.14e-146 | 429 |
| Msa1447210 | AT1G24764.1 | 45.749 | 494 | 226 | 8 | 13 | 490 | 74 | 541 | 5.74e-131 | 394 |
| Msa1447210 | AT1G24764.3 | 45.749 | 494 | 226 | 8 | 13 | 490 | 133 | 600 | 1.88e-129 | 392 |
| Msa1447210 | AT1G68060.1 | 46.761 | 494 | 220 | 11 | 13 | 491 | 66 | 531 | 2.41e-129 | 389 |
| Msa1447210 | AT1G14840.1 | 44.869 | 497 | 224 | 8 | 13 | 491 | 49 | 513 | 1.69e-126 | 381 |
| Msa1447210 | AT2G01750.1 | 44.785 | 489 | 233 | 6 | 13 | 490 | 73 | 535 | 1.23e-125 | 380 |
| Msa1447210 | AT2G01750.2 | 44.785 | 489 | 233 | 6 | 13 | 490 | 73 | 535 | 1.24e-125 | 380 |
| Msa1447210 | AT1G14840.2 | 42.455 | 497 | 221 | 9 | 13 | 491 | 49 | 498 | 1.50e-111 | 342 |
| Msa1447210 | AT1G24764.2 | 46.024 | 415 | 182 | 8 | 93 | 491 | 1 | 389 | 1.54e-108 | 331 |
Find 98 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAGTTTCTTGACTTCT+AGG | 0.102098 | tig0031612:-6366 | None:intergenic |
| TTTCCTTTGGTCTTCTATTT+TGG | 0.106408 | tig0031612:-5162 | None:intergenic |
| TTTCCTTTGGTATCCAATTT+TGG | 0.142874 | tig0031612:-5057 | None:intergenic |
| CTTAGCTTCAGTTGCCCTTA+TGG | 0.199525 | tig0031612:-6037 | None:intergenic |
| ATTCTTTATGAAGAGAAAAT+TGG | 0.212662 | tig0031612:+8503 | Msa1447210:three_prime_UTR |
| GGTAGAACCATATTTCATTT+TGG | 0.221595 | tig0031612:-7733 | None:intergenic |
| TTCCAAAAGCCAAACATAAA+AGG | 0.248082 | tig0031612:+7666 | Msa1447210:CDS |
| ACACTTACCATCACCAAAAT+TGG | 0.257334 | tig0031612:+5044 | Msa1447210:five_prime_UTR |
| TCTTCTAACCATTGCCTAAC+AGG | 0.277147 | tig0031612:-7286 | None:intergenic |
| ATAGAAACTATACACGAAAA+TGG | 0.289286 | tig0031612:-6834 | None:intergenic |
| ATATTCGATTTATCAGCTTT+TGG | 0.300457 | tig0031612:-7561 | None:intergenic |
| AGCATAACCAAAATGAAATA+TGG | 0.322617 | tig0031612:+7726 | Msa1447210:CDS |
| TTTACCAAGAAAGAAGAAAA+TGG | 0.324121 | tig0031612:+5319 | Msa1447210:exon |
| CCTCAAGTTCATGAATTGTT+TGG | 0.350831 | tig0031612:-6969 | None:intergenic |
| TCTACAGATTACAGCACTTC+AGG | 0.391041 | tig0031612:+6636 | Msa1447210:intron |
| GAAAGCACTGATGTGGTCTC+TGG | 0.402489 | tig0031612:+7900 | Msa1447210:CDS |
| GTGATAAGGTCATGCCTGTT+AGG | 0.415652 | tig0031612:+7272 | Msa1447210:CDS |
| TCAGGAAGATAAGAAAGCTT+TGG | 0.418519 | tig0031612:+6654 | Msa1447210:CDS |
| ACAATGGTGGATTGAGAAAC+AGG | 0.418721 | tig0031612:+7601 | Msa1447210:CDS |
| AAAAGGCAACATAGACAGTA+TGG | 0.427289 | tig0031612:+7683 | Msa1447210:CDS |
| TAGCATACTCCATTTGTTGT+TGG | 0.431105 | tig0031612:+5101 | Msa1447210:five_prime_UTR |
| AGATCTCGATCCGTCTCTTC+AGG | 0.431500 | tig0031612:-6786 | None:intergenic |
| ATCTCCAACACAACAACATC+TGG | 0.433211 | tig0031612:-5371 | None:intergenic |
| AAAAGCAGAATCACAATTGA+AGG | 0.437230 | tig0031612:+7375 | Msa1447210:CDS |
| TATGGCTGGGAACCGAAAAC+CGG | 0.449172 | tig0031612:+7701 | Msa1447210:CDS |
| AAGATTACACACAGATCAAA+AGG | 0.452964 | tig0031612:+6441 | Msa1447210:CDS |
| GAGAAATGAAGTAAGTAAGA+TGG | 0.460243 | tig0031612:+6233 | Msa1447210:CDS |
| ATGGTGAAATCAAGGCCATA+AGG | 0.461955 | tig0031612:+6022 | Msa1447210:CDS |
| ACAGGAGGAGAACAAAATCT+TGG | 0.462576 | tig0031612:+6903 | Msa1447210:intron |
| AGAAGGCTTAAAGCAATTCT+CGG | 0.473398 | tig0031612:+7512 | Msa1447210:CDS |
| GAGGAGCTCATCTTATCAAA+TGG | 0.475247 | tig0031612:+6988 | Msa1447210:CDS |
| CGCAACAGTTGCAATTCTGT+TGG | 0.479391 | tig0031612:-7227 | None:intergenic |
| TTTAGAGTCTTCATCAGCAT+TGG | 0.483845 | tig0031612:-7856 | None:intergenic |
| TGGAGATACTGAAAATGCAT+TGG | 0.489587 | tig0031612:-7541 | None:intergenic |
| AAAACACCAACAACAAATGA+TGG | 0.495818 | tig0031612:-5002 | None:intergenic |
| TCTCAGACTCTGTAAGTTAG+TGG | 0.498944 | tig0031612:-8609 | None:intergenic |
| TCACAAAAGTAGAACACCTA+TGG | 0.501557 | tig0031612:+5247 | Msa1447210:five_prime_UTR |
| TAAAAGCCATCATTTGTTGT+TGG | 0.502135 | tig0031612:+4996 | Msa1447210:five_prime_UTR |
| GGCAACATAGACAGTATGGC+TGG | 0.502574 | tig0031612:+7687 | Msa1447210:CDS |
| TTTCCAACGGTAGATCCTCT+TGG | 0.502837 | tig0031612:-7636 | None:intergenic |
| CATTTGCAAAACAAACTCAT+AGG | 0.508565 | tig0031612:+5398 | Msa1447210:CDS |
| CAAACCAGATGTTGTTGTGT+TGG | 0.510088 | tig0031612:+5367 | Msa1447210:CDS |
| ATGGAAAGATGAAAGTGATA+AGG | 0.511209 | tig0031612:+7258 | Msa1447210:CDS |
| CTTTATGAAGAGAAAATTGG+AGG | 0.512076 | tig0031612:+8506 | Msa1447210:three_prime_UTR |
| CAACTGTTGCGGCTAATGAA+TGG | 0.512914 | tig0031612:+7239 | Msa1447210:CDS |
| CTTCTCTGTATGTACAGAGT+TGG | 0.523530 | tig0031612:-8633 | None:intergenic |
| TAAGTGTACTGTTGAGGCTA+AGG | 0.523957 | tig0031612:-5133 | None:intergenic |
| TACATGCCATGGTGAAATCA+AGG | 0.527571 | tig0031612:+6014 | Msa1447210:CDS |
| TGCGAGACTAAGACTTAAAG+AGG | 0.531452 | tig0031612:+6257 | Msa1447210:CDS |
| GGCGTGATGACACTTTCAAA+TGG | 0.532270 | tig0031612:-6478 | None:intergenic |
| AACATAAGAAGATATATGCC+TGG | 0.538469 | tig0031612:-6810 | None:intergenic |
| TAAAATTTCAGGAGGAGAAG+AGG | 0.539106 | tig0031612:+7167 | Msa1447210:intron |
| CCAAACAATTCATGAACTTG+AGG | 0.539948 | tig0031612:+6969 | Msa1447210:CDS |
| AACAAATGAAGTATGATCAC+TGG | 0.540299 | tig0031612:-5286 | None:intergenic |
| AAGCCACCGGCAAAAGATTG+TGG | 0.540851 | tig0031612:+6930 | Msa1447210:CDS |
| TATATATAGTATTATTCCAT+AGG | 0.547203 | tig0031612:-5263 | None:intergenic |
| AGAAGAAAGAAAGATTATGC+AGG | 0.548152 | tig0031612:+7303 | Msa1447210:CDS |
| CACTAGAGAGGGAATTAGCA+AGG | 0.557388 | tig0031612:+7191 | Msa1447210:CDS |
| CAACAGAATTGCAACTGTTG+CGG | 0.557551 | tig0031612:+7228 | Msa1447210:CDS |
| TTAAGTTTCGTAACGAACAA+TGG | 0.569896 | tig0031612:+7585 | Msa1447210:CDS |
| GAGACGGATCGAGATCTGCC+AGG | 0.577223 | tig0031612:+6792 | Msa1447210:CDS |
| TGGTGAAATCAAGGCCATAA+GGG | 0.577785 | tig0031612:+6023 | Msa1447210:CDS |
| ATCTTAATCTCGTCTTCAAG+AGG | 0.579230 | tig0031612:-6499 | None:intergenic |
| TGATGGAAAGTGCCCTATTG+AGG | 0.579242 | tig0031612:-5227 | None:intergenic |
| GAAAATGGTTGTCAATGAAG+AGG | 0.581609 | tig0031612:+5334 | Msa1447210:exon |
| AGACGAAAAGAAAGATGCGT+TGG | 0.582689 | tig0031612:+6387 | Msa1447210:CDS |
| AACTGAAGCTAAGAAAGATA+AGG | 0.586496 | tig0031612:+6047 | Msa1447210:CDS |
| GCTCACAAAGTCGAAAGAGT+TGG | 0.587191 | tig0031612:+6681 | Msa1447210:CDS |
| GAAAGATAAGGCCATAGAAG+AGG | 0.588351 | tig0031612:+6059 | Msa1447210:CDS |
| ACAACATCTGGTTTGACAAG+AGG | 0.589315 | tig0031612:-5359 | None:intergenic |
| TTATGCAGGCAGAGATGCAA+AGG | 0.590511 | tig0031612:+7317 | Msa1447210:CDS |
| AGGAGAAGAGGACACTAGAG+AGG | 0.591941 | tig0031612:+7179 | Msa1447210:CDS |
| CGCAGGATAAACTGAAGCTG+AGG | 0.593606 | tig0031612:+7475 | Msa1447210:intron |
| AAAACTTTGACCTGAAGAGA+CGG | 0.598972 | tig0031612:+6776 | Msa1447210:CDS |
| ATGGCTGGGAACCGAAAACC+GGG | 0.599697 | tig0031612:+7702 | Msa1447210:CDS |
| AGGTCATGCCTGTTAGGCAA+TGG | 0.612732 | tig0031612:+7278 | Msa1447210:CDS |
| TTATGGCCTTGATTTCACCA+TGG | 0.621711 | tig0031612:-6020 | None:intergenic |
| TCACCAAAATTGGATACCAA+AGG | 0.622755 | tig0031612:+5054 | Msa1447210:five_prime_UTR |
| TAACCAAAATAGAAGACCAA+AGG | 0.624121 | tig0031612:+5159 | Msa1447210:five_prime_UTR |
| AAGATAAGAAAGCTTTGGAA+CGG | 0.627349 | tig0031612:+6659 | Msa1447210:CDS |
| TGATTTAGAAAGCACTGATG+TGG | 0.627887 | tig0031612:+7893 | Msa1447210:CDS |
| AATGAACTTGCTACATGCCA+TGG | 0.628116 | tig0031612:+6003 | Msa1447210:CDS |
| AGTTTCGTAACGAACAATGG+TGG | 0.630214 | tig0031612:+7588 | Msa1447210:CDS |
| CAACCAAGAGGATCTACCGT+TGG | 0.630663 | tig0031612:+7633 | Msa1447210:CDS |
| ATAATCACGAATGAGATTAG+CGG | 0.637427 | tig0031612:-7016 | None:intergenic |
| AAATCTTGGAGAAAAGCCAC+CGG | 0.637665 | tig0031612:+6917 | Msa1447210:CDS |
| TTATGGTAAGTGTACTGTTG+AGG | 0.644306 | tig0031612:-5139 | None:intergenic |
| GCAACATAGACAGTATGGCT+GGG | 0.648667 | tig0031612:+7688 | Msa1447210:CDS |
| TGGCATTGCTTGAAGCAGAG+AGG | 0.652208 | tig0031612:+6701 | Msa1447210:CDS |
| TTGGAACAAAGTGTTTCCAA+CGG | 0.656799 | tig0031612:-7649 | None:intergenic |
| ATCACGAATGAGATTAGCGG+TGG | 0.659965 | tig0031612:-7013 | None:intergenic |
| GGAGAAGAGGACACTAGAGA+GGG | 0.660251 | tig0031612:+7180 | Msa1447210:CDS |
| AATGAGATACAGGTGAACAC+AGG | 0.676366 | tig0031612:+7822 | Msa1447210:CDS |
| TGATGGTAAGTGTACTGTTG+AGG | 0.679865 | tig0031612:-5034 | None:intergenic |
| ACTAGAGAGGGAATTAGCAA+GGG | 0.681716 | tig0031612:+7192 | Msa1447210:CDS |
| GATTAAGATGTATAGAACTG+AGG | 0.694125 | tig0031612:+6513 | Msa1447210:CDS |
| AGGTCTACATCACAACCAAG+AGG | 0.700161 | tig0031612:+7621 | Msa1447210:CDS |
| TGATTCTGCAGCATATTGTG+CGG | 0.724358 | tig0031612:-6410 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGGTATTTAAAAAAATAA+AGG | + | tig0031612:5662-5681 | Msa1447210:intron | 10.0% |
| !!! | TAATTTATTTTTTTCTATGT+AGG | + | tig0031612:7398-7417 | Msa1447210:intron | 10.0% |
| !!! | TATATAAAGTATTTTTCCTT+TGG | - | tig0031612:5178-5197 | None:intergenic | 15.0% |
| !! | TATATATAGTATTATTCCAT+AGG | - | tig0031612:5266-5285 | None:intergenic | 15.0% |
| !! | TTAAAAAAATCAATAGATCA+AGG | + | tig0031612:5844-5863 | Msa1447210:intron | 15.0% |
| !! | TAAAAAAATCAATAGATCAA+GGG | + | tig0031612:5845-5864 | Msa1447210:intron | 15.0% |
| !!! | CTATTTTTACTCCTTATTTT+TGG | + | tig0031612:5542-5561 | Msa1447210:intron | 20.0% |
| !!! | TTTCTTTTACACATTAACAA+TGG | - | tig0031612:5707-5726 | None:intergenic | 20.0% |
| !! | AACAAATAATGTTCTAACTT+TGG | - | tig0031612:6139-6158 | None:intergenic | 20.0% |
| !!! | CATAGAATTTATCATTGTTT+TGG | - | tig0031612:6312-6331 | None:intergenic | 20.0% |
| !! | TAAAAAAAGAAGTCAGATAA+CGG | - | tig0031612:8121-8140 | None:intergenic | 20.0% |
| !!! | TTTAGTTCTATGTAACAAAA+GGG | - | tig0031612:8207-8226 | None:intergenic | 20.0% |
| !! | ATTCTTTATGAAGAGAAAAT+TGG | + | tig0031612:8503-8522 | Msa1447210:three_prime_UTR | 20.0% |
| !! | ATACTATAGTGTTTTTCCTT+TGG | - | tig0031612:5073-5092 | None:intergenic | 25.0% |
| ! | ACAAAAATACCAACAACAAA+TGG | - | tig0031612:5113-5132 | None:intergenic | 25.0% |
| ! | TTTACCAAGAAAGAAGAAAA+TGG | + | tig0031612:5319-5338 | Msa1447210:exon | 25.0% |
| ! | ATTTGCTTCATCATTTGATT+AGG | + | tig0031612:5451-5470 | Msa1447210:intron | 25.0% |
| !!! | TGCACTTTTTTTTTATCGTA+AGG | + | tig0031612:5601-5620 | Msa1447210:intron | 25.0% |
| !! | TTAAATACCTTTTGTTACCT+TGG | - | tig0031612:5654-5673 | None:intergenic | 25.0% |
| ! | AACTAGTGACAATTTATTCA+TGG | + | tig0031612:5786-5805 | Msa1447210:intron | 25.0% |
| !! | ATCACAGTTTTCTTTGAATA+TGG | + | tig0031612:5904-5923 | Msa1447210:intron | 25.0% |
| ! | AAAAACAAATACCTCTTCTA+TGG | - | tig0031612:6073-6092 | None:intergenic | 25.0% |
| ! | GTTAGTGTTATCATCTTTAA+AGG | - | tig0031612:6606-6625 | None:intergenic | 25.0% |
| ! | ATAGAAACTATACACGAAAA+TGG | - | tig0031612:6837-6856 | None:intergenic | 25.0% |
| ! | TGTATAGTTTCTATATCGAA+CGG | + | tig0031612:6843-6862 | Msa1447210:intron | 25.0% |
| !! | TTATACAACTTTTCATGAAC+AGG | + | tig0031612:6885-6904 | Msa1447210:intron | 25.0% |
| !!! | TGGTTTTAGCATAAAATTTC+AGG | + | tig0031612:7156-7175 | Msa1447210:intron | 25.0% |
| !! | TTTTAGCATAAAATTTCAGG+AGG | + | tig0031612:7159-7178 | Msa1447210:intron | 25.0% |
| !! | ATATTCGATTTATCAGCTTT+TGG | - | tig0031612:7564-7583 | None:intergenic | 25.0% |
| ! | AGCATAACCAAAATGAAATA+TGG | + | tig0031612:7726-7745 | Msa1447210:CDS | 25.0% |
| !!! | ACCTTTTTTCAACACATTTT+CGG | - | tig0031612:7757-7776 | None:intergenic | 25.0% |
| !! | ATGTGTTGAAAAAAGGTATA+TGG | + | tig0031612:7760-7779 | Msa1447210:CDS | 25.0% |
| !! | TGTGTTGAAAAAAGGTATAT+GGG | + | tig0031612:7761-7780 | Msa1447210:CDS | 25.0% |
| !! | TCAAGAAACAAATTTTCTGA+TGG | + | tig0031612:7786-7805 | Msa1447210:CDS | 25.0% |
| ! | TGAAAAAGAAAATGAGATAC+AGG | + | tig0031612:7812-7831 | Msa1447210:CDS | 25.0% |
| ! | AAAAAGAAGTCATCAATTTG+AGG | + | tig0031612:7943-7962 | Msa1447210:CDS | 25.0% |
| ! | TACCTTAATTTCTTCATCTT+TGG | - | tig0031612:8003-8022 | None:intergenic | 25.0% |
| !!! | CTTTAGTTCTATGTAACAAA+AGG | - | tig0031612:8208-8227 | None:intergenic | 25.0% |
| ! | AGGTTAACTATAGAAGTAAA+AGG | - | tig0031612:8437-8456 | None:intergenic | 25.0% |
| !! | GTAATTTTATAGCATTGTTC+AGG | - | tig0031612:8457-8476 | None:intergenic | 25.0% |
| ! | AATGCTATAAAATTACTGCA+GGG | + | tig0031612:8461-8480 | Msa1447210:intron | 25.0% |
| !! | TAAAAGCCATCATTTGTTGT+TGG | + | tig0031612:4996-5015 | Msa1447210:five_prime_UTR | 30.0% |
| AAAACACCAACAACAAATGA+TGG | - | tig0031612:5005-5024 | None:intergenic | 30.0% | |
| ! | TTTCCTTTGGTATCCAATTT+TGG | - | tig0031612:5060-5079 | None:intergenic | 30.0% |
| !!! | TTGGTCTTCTATTTTGGTTA+TGG | - | tig0031612:5159-5178 | None:intergenic | 30.0% |
| TAACCAAAATAGAAGACCAA+AGG | + | tig0031612:5159-5178 | Msa1447210:five_prime_UTR | 30.0% | |
| !! | TTTCCTTTGGTCTTCTATTT+TGG | - | tig0031612:5165-5184 | None:intergenic | 30.0% |
| ! | TTTTTGTACTTAGCCTCAAT+AGG | + | tig0031612:5214-5233 | Msa1447210:five_prime_UTR | 30.0% |
| ! | TTTTGTACTTAGCCTCAATA+GGG | + | tig0031612:5215-5234 | Msa1447210:five_prime_UTR | 30.0% |
| AACAAATGAAGTATGATCAC+TGG | - | tig0031612:5289-5308 | None:intergenic | 30.0% | |
| ! | ACAACCATTTTCTTCTTTCT+TGG | - | tig0031612:5326-5345 | None:intergenic | 30.0% |
| CATTTGCAAAACAAACTCAT+AGG | + | tig0031612:5398-5417 | Msa1447210:CDS | 30.0% | |
| AACACCAATGGAAAATTAGA+TGG | + | tig0031612:5487-5506 | Msa1447210:intron | 30.0% | |
| ! | TTTAAGTGAACTCTTTTCCA+AGG | + | tig0031612:5634-5653 | Msa1447210:intron | 30.0% |
| ! | CTTTTACACATTAACAATGG+TGG | - | tig0031612:5704-5723 | None:intergenic | 30.0% |
| TCATGACTAAAAAGTGATAG+TGG | + | tig0031612:5762-5781 | Msa1447210:intron | 30.0% | |
| AAAAATCAATAGATCAAGGG+AGG | + | tig0031612:5848-5867 | Msa1447210:intron | 30.0% | |
| !! | GTTTTAATCTGTTGCAGAAA+AGG | + | tig0031612:5978-5997 | Msa1447210:intron | 30.0% |
| AACTGAAGCTAAGAAAGATA+AGG | + | tig0031612:6047-6066 | Msa1447210:CDS | 30.0% | |
| GAGAAATGAAGTAAGTAAGA+TGG | + | tig0031612:6233-6252 | Msa1447210:CDS | 30.0% | |
| AGAGGATCATCTTAAAAACA+AGG | + | tig0031612:6275-6294 | Msa1447210:CDS | 30.0% | |
| AAGATTACACACAGATCAAA+AGG | + | tig0031612:6441-6460 | Msa1447210:CDS | 30.0% | |
| GATTAAGATGTATAGAACTG+AGG | + | tig0031612:6513-6532 | Msa1447210:CDS | 30.0% | |
| AACGCATCATTAATGGAAAT+TGG | - | tig0031612:6549-6568 | None:intergenic | 30.0% | |
| CATTGTAAACGCATCATTAA+TGG | - | tig0031612:6556-6575 | None:intergenic | 30.0% | |
| !! | AAGATAAGAAAGCTTTGGAA+CGG | + | tig0031612:6659-6678 | Msa1447210:CDS | 30.0% |
| AACATAAGAAGATATATGCC+TGG | - | tig0031612:6813-6832 | None:intergenic | 30.0% | |
| ATAATCACGAATGAGATTAG+CGG | - | tig0031612:7019-7038 | None:intergenic | 30.0% | |
| ! | TTTTGGACTAACTTTTGCAT+AGG | + | tig0031612:7098-7117 | Msa1447210:intron | 30.0% |
| ! | CATAGGAATTTTGTATCTAC+TGG | + | tig0031612:7115-7134 | Msa1447210:intron | 30.0% |
| GGTTTATCTATACAGTAACA+TGG | + | tig0031612:7136-7155 | Msa1447210:intron | 30.0% | |
| ATGGAAAGATGAAAGTGATA+AGG | + | tig0031612:7258-7277 | Msa1447210:CDS | 30.0% | |
| AGAAGAAAGAAAGATTATGC+AGG | + | tig0031612:7303-7322 | Msa1447210:CDS | 30.0% | |
| AAAAGCAGAATCACAATTGA+AGG | + | tig0031612:7375-7394 | Msa1447210:CDS | 30.0% | |
| !! | ATACGGTATTTATTTTTCGC+AGG | + | tig0031612:7458-7477 | Msa1447210:intron | 30.0% |
| TTAAGTTTCGTAACGAACAA+TGG | + | tig0031612:7585-7604 | Msa1447210:CDS | 30.0% | |
| TTCCAAAAGCCAAACATAAA+AGG | + | tig0031612:7666-7685 | Msa1447210:CDS | 30.0% | |
| ! | TCTATGTTGCCTTTTATGTT+TGG | - | tig0031612:7678-7697 | None:intergenic | 30.0% |
| ! | GGTAGAACCATATTTCATTT+TGG | - | tig0031612:7736-7755 | None:intergenic | 30.0% |
| ACCGAAAATGTGTTGAAAAA+AGG | + | tig0031612:7753-7772 | Msa1447210:CDS | 30.0% | |
| ! | AGAAACAAATTTTCTGATGG+TGG | + | tig0031612:7789-7808 | Msa1447210:CDS | 30.0% |
| CACCAAAGATGAAGAAATTA+AGG | + | tig0031612:7998-8017 | Msa1447210:intron | 30.0% | |
| AGATGAAGAAATTAAGGTAC+TGG | + | tig0031612:8004-8023 | Msa1447210:intron | 30.0% | |
| TTGTCAATCGTAGAAAATAG+TGG | + | tig0031612:8050-8069 | Msa1447210:intron | 30.0% | |
| CATCAATAAAATCCGATGAT+AGG | + | tig0031612:8342-8361 | Msa1447210:intron | 30.0% | |
| GAAGTTCAAACTTCTCTAAA+AGG | + | tig0031612:8375-8394 | Msa1447210:intron | 30.0% | |
| CAATGCTATAAAATTACTGC+AGG | + | tig0031612:8460-8479 | Msa1447210:intron | 30.0% | |
| CTTTATGAAGAGAAAATTGG+AGG | + | tig0031612:8506-8525 | Msa1447210:three_prime_UTR | 30.0% | |
| ACACTTACCATCACCAAAAT+TGG | + | tig0031612:5044-5063 | Msa1447210:five_prime_UTR | 35.0% | |
| !! | TTGGTATCCAATTTTGGTGA+TGG | - | tig0031612:5054-5073 | None:intergenic | 35.0% |
| TCACCAAAATTGGATACCAA+AGG | + | tig0031612:5054-5073 | Msa1447210:five_prime_UTR | 35.0% | |
| !! | TAGCATACTCCATTTGTTGT+TGG | + | tig0031612:5101-5120 | Msa1447210:five_prime_UTR | 35.0% |
| TTATGGTAAGTGTACTGTTG+AGG | - | tig0031612:5142-5161 | None:intergenic | 35.0% | |
| !! | TAGGTGTTCTACTTTTGTGA+TGG | - | tig0031612:5247-5266 | None:intergenic | 35.0% |
| TCACAAAAGTAGAACACCTA+TGG | + | tig0031612:5247-5266 | Msa1447210:five_prime_UTR | 35.0% | |
| GAAAATGGTTGTCAATGAAG+AGG | + | tig0031612:5334-5353 | Msa1447210:exon | 35.0% | |
| TCATGCATGTAAAACACCAA+TGG | + | tig0031612:5475-5494 | Msa1447210:intron | 35.0% | |
| ! | GAGTCCATCTAATTTTCCAT+TGG | - | tig0031612:5494-5513 | None:intergenic | 35.0% |
| CTGACACAAGACCAAAAATA+AGG | - | tig0031612:5556-5575 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGTCTTGTGTCAG+TGG | + | tig0031612:5556-5575 | Msa1447210:intron | 35.0% |
| ! | CTCTTTTCCAAGGTAACAAA+AGG | + | tig0031612:5644-5663 | Msa1447210:intron | 35.0% |
| ATCTTAATCTCGTCTTCAAG+AGG | - | tig0031612:6502-6521 | None:intergenic | 35.0% | |
| TCAGGAAGATAAGAAAGCTT+TGG | + | tig0031612:6654-6673 | Msa1447210:CDS | 35.0% | |
| AAAACTTTGACCTGAAGAGA+CGG | + | tig0031612:6776-6795 | Msa1447210:CDS | 35.0% | |
| ! | TACAACTTTTCATGAACAGG+AGG | + | tig0031612:6888-6907 | Msa1447210:intron | 35.0% |
| CCTCAAGTTCATGAATTGTT+TGG | - | tig0031612:6972-6991 | None:intergenic | 35.0% | |
| CCAAACAATTCATGAACTTG+AGG | + | tig0031612:6969-6988 | Msa1447210:CDS | 35.0% | |
| ! | TGATATGACGACTTGCATTT+TGG | + | tig0031612:7081-7100 | Msa1447210:intron | 35.0% |
| TAAAATTTCAGGAGGAGAAG+AGG | + | tig0031612:7167-7186 | Msa1447210:intron | 35.0% | |
| !!! | TTTTGCTGTTCTCTCTGATA+TGG | - | tig0031612:7359-7378 | None:intergenic | 35.0% |
| AGAAGGCTTAAAGCAATTCT+CGG | + | tig0031612:7512-7531 | Msa1447210:CDS | 35.0% | |
| TGGAGATACTGAAAATGCAT+TGG | - | tig0031612:7544-7563 | None:intergenic | 35.0% | |
| ! | TTGGAACAAAGTGTTTCCAA+CGG | - | tig0031612:7652-7671 | None:intergenic | 35.0% |
| !!! | TGCCTTTTATGTTTGGCTTT+TGG | - | tig0031612:7671-7690 | None:intergenic | 35.0% |
| AAAAGGCAACATAGACAGTA+TGG | + | tig0031612:7683-7702 | Msa1447210:CDS | 35.0% | |
| !!! | TTCATTTTGGTTATGCTACC+CGG | - | tig0031612:7723-7742 | None:intergenic | 35.0% |
| ! | TTTAGAGTCTTCATCAGCAT+TGG | - | tig0031612:7859-7878 | None:intergenic | 35.0% |
| !! | TGATTTAGAAAGCACTGATG+TGG | + | tig0031612:7893-7912 | Msa1447210:CDS | 35.0% |
| CGATTGACAACTTTGATATG+AGG | - | tig0031612:8040-8059 | None:intergenic | 35.0% | |
| CAATAAAATCCGATGATAGG+AGG | + | tig0031612:8345-8364 | Msa1447210:intron | 35.0% | |
| TGATGGTAAGTGTACTGTTG+AGG | - | tig0031612:5037-5056 | None:intergenic | 40.0% | |
| TAAGTGTACTGTTGAGGCTA+AGG | - | tig0031612:5031-5050 | None:intergenic | 40.0% | |
| ! | ACAACATCTGGTTTGACAAG+AGG | - | tig0031612:5362-5381 | None:intergenic | 40.0% |
| CAAACCAGATGTTGTTGTGT+TGG | + | tig0031612:5367-5386 | Msa1447210:CDS | 40.0% | |
| ATCTCCAACACAACAACATC+TGG | - | tig0031612:5374-5393 | None:intergenic | 40.0% | |
| ! | TAGATGGACTCATTGTGTCA+AGG | + | tig0031612:5503-5522 | Msa1447210:intron | 40.0% |
| !! | AATGAACTTGCTACATGCCA+TGG | + | tig0031612:6003-6022 | Msa1447210:CDS | 40.0% |
| TACATGCCATGGTGAAATCA+AGG | + | tig0031612:6014-6033 | Msa1447210:CDS | 40.0% | |
| ! | TTATGGCCTTGATTTCACCA+TGG | - | tig0031612:6023-6042 | None:intergenic | 40.0% |
| ATGGTGAAATCAAGGCCATA+AGG | + | tig0031612:6022-6041 | Msa1447210:CDS | 40.0% | |
| TGGTGAAATCAAGGCCATAA+GGG | + | tig0031612:6023-6042 | Msa1447210:CDS | 40.0% | |
| GAAAGATAAGGCCATAGAAG+AGG | + | tig0031612:6059-6078 | Msa1447210:CDS | 40.0% | |
| TGCGAGACTAAGACTTAAAG+AGG | + | tig0031612:6257-6276 | Msa1447210:CDS | 40.0% | |
| CTGTCAGTTTCTTGACTTCT+AGG | - | tig0031612:6369-6388 | None:intergenic | 40.0% | |
| AGACGAAAAGAAAGATGCGT+TGG | + | tig0031612:6387-6406 | Msa1447210:CDS | 40.0% | |
| TGATTCTGCAGCATATTGTG+CGG | - | tig0031612:6413-6432 | None:intergenic | 40.0% | |
| !! | GAAGTGCTGTAATCTGTAGA+TGG | - | tig0031612:6636-6655 | None:intergenic | 40.0% |
| TCTACAGATTACAGCACTTC+AGG | + | tig0031612:6636-6655 | Msa1447210:intron | 40.0% | |
| ACAGGAGGAGAACAAAATCT+TGG | + | tig0031612:6903-6922 | Msa1447210:intron | 40.0% | |
| AAATCTTGGAGAAAAGCCAC+CGG | + | tig0031612:6917-6936 | Msa1447210:CDS | 40.0% | |
| ! | CAACTTCCACAATCTTTTGC+CGG | - | tig0031612:6939-6958 | None:intergenic | 40.0% |
| GAGGAGCTCATCTTATCAAA+TGG | + | tig0031612:6988-7007 | Msa1447210:CDS | 40.0% | |
| CAGATTTCTGAGTTGCAAGT+AGG | + | tig0031612:7045-7064 | Msa1447210:intron | 40.0% | |
| ACTAGAGAGGGAATTAGCAA+GGG | + | tig0031612:7192-7211 | Msa1447210:CDS | 40.0% | |
| CAACAGAATTGCAACTGTTG+CGG | + | tig0031612:7228-7247 | Msa1447210:CDS | 40.0% | |
| TCTTCTAACCATTGCCTAAC+AGG | - | tig0031612:7289-7308 | None:intergenic | 40.0% | |
| AGGCTAAAAACGCTTGAAGA+AGG | + | tig0031612:7495-7514 | Msa1447210:CDS | 40.0% | |
| AGTTTCGTAACGAACAATGG+TGG | + | tig0031612:7588-7607 | Msa1447210:CDS | 40.0% | |
| !! | ACAATGGTGGATTGAGAAAC+AGG | + | tig0031612:7601-7620 | Msa1447210:CDS | 40.0% |
| AATGAGATACAGGTGAACAC+AGG | + | tig0031612:7822-7841 | Msa1447210:CDS | 40.0% | |
| GATGCTCACAAAGAAAGTTG+AGG | + | tig0031612:8247-8266 | Msa1447210:intron | 40.0% | |
| !! | GAAAGTTGAGGCATTGACAA+AGG | + | tig0031612:8259-8278 | Msa1447210:intron | 40.0% |
| CAAAGGCTATGGAAGTAGAA+TGG | + | tig0031612:8276-8295 | Msa1447210:intron | 40.0% | |
| !! | TCTGCTTTTCCTCCTATCAT+CGG | - | tig0031612:8357-8376 | None:intergenic | 40.0% |
| TCTCAGACTCTGTAAGTTAG+TGG | - | tig0031612:8612-8631 | None:intergenic | 40.0% | |
| CTTCTCTGTATGTACAGAGT+TGG | - | tig0031612:8636-8655 | None:intergenic | 40.0% | |
| !! | TGATGGAAAGTGCCCTATTG+AGG | - | tig0031612:5230-5249 | None:intergenic | 45.0% |
| !! | TTGGTCTTGTGTCAGTGGTA+AGG | + | tig0031612:5561-5580 | Msa1447210:intron | 45.0% |
| CTTAGCTTCAGTTGCCCTTA+TGG | - | tig0031612:6040-6059 | None:intergenic | 45.0% | |
| GGCGTGATGACACTTTCAAA+TGG | - | tig0031612:6481-6500 | None:intergenic | 45.0% | |
| GCTCACAAAGTCGAAAGAGT+TGG | + | tig0031612:6681-6700 | Msa1447210:CDS | 45.0% | |
| ATCACGAATGAGATTAGCGG+TGG | - | tig0031612:7016-7035 | None:intergenic | 45.0% | |
| CACTAGAGAGGGAATTAGCA+AGG | + | tig0031612:7191-7210 | Msa1447210:CDS | 45.0% | |
| CGCAACAGTTGCAATTCTGT+TGG | - | tig0031612:7230-7249 | None:intergenic | 45.0% | |
| CAACTGTTGCGGCTAATGAA+TGG | + | tig0031612:7239-7258 | Msa1447210:CDS | 45.0% | |
| GTGATAAGGTCATGCCTGTT+AGG | + | tig0031612:7272-7291 | Msa1447210:CDS | 45.0% | |
| TTATGCAGGCAGAGATGCAA+AGG | + | tig0031612:7317-7336 | Msa1447210:CDS | 45.0% | |
| AGGTCTACATCACAACCAAG+AGG | + | tig0031612:7621-7640 | Msa1447210:CDS | 45.0% | |
| TTTCCAACGGTAGATCCTCT+TGG | - | tig0031612:7639-7658 | None:intergenic | 45.0% | |
| GCAACATAGACAGTATGGCT+GGG | + | tig0031612:7688-7707 | Msa1447210:CDS | 45.0% | |
| ! | TGGTTATGCTACCCGGTTTT+CGG | - | tig0031612:7716-7735 | None:intergenic | 45.0% |
| !! | TGAGGCATTGACAAAGGCTA+TGG | + | tig0031612:8265-8284 | Msa1447210:intron | 45.0% |
| !!! | TAGTAATAAATAATTTTATA+CGG | + | tig0031612:7441-7460 | Msa1447210:intron | 5.0% |
| TGGCATTGCTTGAAGCAGAG+AGG | + | tig0031612:6701-6720 | Msa1447210:CDS | 50.0% | |
| AGATCTCGATCCGTCTCTTC+AGG | - | tig0031612:6789-6808 | None:intergenic | 50.0% | |
| AAGCCACCGGCAAAAGATTG+TGG | + | tig0031612:6930-6949 | Msa1447210:CDS | 50.0% | |
| ! | CTTCCACAATCTTTTGCCGG+TGG | - | tig0031612:6936-6955 | None:intergenic | 50.0% |
| AGGAGAAGAGGACACTAGAG+AGG | + | tig0031612:7179-7198 | Msa1447210:CDS | 50.0% | |
| GGAGAAGAGGACACTAGAGA+GGG | + | tig0031612:7180-7199 | Msa1447210:CDS | 50.0% | |
| AGGTCATGCCTGTTAGGCAA+TGG | + | tig0031612:7278-7297 | Msa1447210:CDS | 50.0% | |
| CGCAGGATAAACTGAAGCTG+AGG | + | tig0031612:7475-7494 | Msa1447210:intron | 50.0% | |
| CAACCAAGAGGATCTACCGT+TGG | + | tig0031612:7633-7652 | Msa1447210:CDS | 50.0% | |
| GGCAACATAGACAGTATGGC+TGG | + | tig0031612:7687-7706 | Msa1447210:CDS | 50.0% | |
| TATGGCTGGGAACCGAAAAC+CGG | + | tig0031612:7701-7720 | Msa1447210:CDS | 50.0% | |
| !! | GAAAGCACTGATGTGGTCTC+TGG | + | tig0031612:7900-7919 | Msa1447210:CDS | 50.0% |
| ATGGCTGGGAACCGAAAACC+GGG | + | tig0031612:7702-7721 | Msa1447210:CDS | 55.0% | |
| GAGACGGATCGAGATCTGCC+AGG | + | tig0031612:6792-6811 | Msa1447210:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031612 | gene | 4979 | 8707 | 4979 | ID=Msa1447210;Name=Msa1447210 |
| tig0031612 | mRNA | 4979 | 8707 | 4979 | ID=Msa1447210-mRNA-1;Parent=Msa1447210;Name=Msa1447210-mRNA-1;_AED=0.12;_eAED=0.12;_QI=359|0.75|0.77|1|1|1|9|221|492 |
| tig0031612 | exon | 4979 | 5419 | 4979 | ID=Msa1447210-mRNA-1:exon:15793;Parent=Msa1447210-mRNA-1 |
| tig0031612 | exon | 5995 | 6080 | 5995 | ID=Msa1447210-mRNA-1:exon:15794;Parent=Msa1447210-mRNA-1 |
| tig0031612 | exon | 6231 | 6296 | 6231 | ID=Msa1447210-mRNA-1:exon:15795;Parent=Msa1447210-mRNA-1 |
| tig0031612 | exon | 6364 | 6534 | 6364 | ID=Msa1447210-mRNA-1:exon:15796;Parent=Msa1447210-mRNA-1 |
| tig0031612 | exon | 6643 | 6843 | 6643 | ID=Msa1447210-mRNA-1:exon:15797;Parent=Msa1447210-mRNA-1 |
| tig0031612 | exon | 6907 | 7062 | 6907 | ID=Msa1447210-mRNA-1:exon:15798;Parent=Msa1447210-mRNA-1 |
| tig0031612 | exon | 7178 | 7396 | 7178 | ID=Msa1447210-mRNA-1:exon:15799;Parent=Msa1447210-mRNA-1 |
| tig0031612 | exon | 7480 | 7972 | 7480 | ID=Msa1447210-mRNA-1:exon:15800;Parent=Msa1447210-mRNA-1 |
| tig0031612 | exon | 8482 | 8707 | 8482 | ID=Msa1447210-mRNA-1:exon:15801;Parent=Msa1447210-mRNA-1 |
| tig0031612 | five_prime_UTR | 4979 | 5337 | 4979 | ID=Msa1447210-mRNA-1:five_prime_utr;Parent=Msa1447210-mRNA-1 |
| tig0031612 | CDS | 5338 | 5419 | 5338 | ID=Msa1447210-mRNA-1:cds;Parent=Msa1447210-mRNA-1 |
| tig0031612 | CDS | 5995 | 6080 | 5995 | ID=Msa1447210-mRNA-1:cds;Parent=Msa1447210-mRNA-1 |
| tig0031612 | CDS | 6231 | 6296 | 6231 | ID=Msa1447210-mRNA-1:cds;Parent=Msa1447210-mRNA-1 |
| tig0031612 | CDS | 6364 | 6534 | 6364 | ID=Msa1447210-mRNA-1:cds;Parent=Msa1447210-mRNA-1 |
| tig0031612 | CDS | 6643 | 6843 | 6643 | ID=Msa1447210-mRNA-1:cds;Parent=Msa1447210-mRNA-1 |
| tig0031612 | CDS | 6907 | 7062 | 6907 | ID=Msa1447210-mRNA-1:cds;Parent=Msa1447210-mRNA-1 |
| tig0031612 | CDS | 7178 | 7396 | 7178 | ID=Msa1447210-mRNA-1:cds;Parent=Msa1447210-mRNA-1 |
| tig0031612 | CDS | 7480 | 7972 | 7480 | ID=Msa1447210-mRNA-1:cds;Parent=Msa1447210-mRNA-1 |
| tig0031612 | CDS | 8482 | 8486 | 8482 | ID=Msa1447210-mRNA-1:cds;Parent=Msa1447210-mRNA-1 |
| tig0031612 | three_prime_UTR | 8487 | 8707 | 8487 | ID=Msa1447210-mRNA-1:three_prime_utr;Parent=Msa1447210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
