AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0197880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197880 MtrunA17_Chr2g0290411 96.685 362 12 0 8 369 191 552 0.0 708
Msa0197880 MtrunA17_Chr4g0076251 67.109 377 100 4 9 369 205 573 7.72e-166 476
Msa0197880 MtrunA17_Chr8g0344311 47.709 371 158 9 8 362 231 581 2.10e-90 283
Msa0197880 MtrunA17_Chr8g0391771 46.216 370 167 9 8 362 235 587 1.99e-88 278
Msa0197880 MtrunA17_Chr1g0161371 45.845 373 164 10 8 362 230 582 3.61e-86 272
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197880 AT4G17220.1 54.651 344 110 7 8 346 184 486 1.68e-108 327
Msa0197880 AT1G24764.2 45.845 373 166 7 8 362 99 453 1.72e-92 285
Msa0197880 AT1G24764.1 45.845 373 166 7 8 362 252 606 1.22e-90 285
Msa0197880 AT1G68060.1 48.518 371 155 11 8 360 244 596 1.77e-90 284
Msa0197880 AT1G24764.3 45.845 373 166 7 8 362 311 665 1.22e-89 284
Msa0197880 AT2G01750.1 45.553 371 171 6 8 363 251 605 8.57e-88 277
Msa0197880 AT2G01750.2 45.553 371 171 6 8 363 251 605 1.03e-87 277
Msa0197880 AT1G14840.1 44.353 363 164 5 8 353 227 568 1.69e-85 271
Msa0197880 AT1G14840.2 41.779 371 147 8 8 353 227 553 1.48e-70 231

Find 61 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTTATGAAGAGAAAAT+TGG 0.212662 2_1:+16236635 Msa0197880:three_prime_UTR
GGTAGAACCATATTTCATTT+TGG 0.221595 2_1:-16235865 None:intergenic
TACCTTAATTTCTTCATCTT+TGG 0.231823 2_1:-16236132 None:intergenic
TTCCAAAAGCCAAACATAAA+AGG 0.248082 2_1:+16235798 Msa0197880:CDS
GAAGTTCAAACTTCTCTAAA+AGG 0.264788 2_1:+16236507 Msa0197880:CDS
TCTTCTAACCATTGCCTAAC+AGG 0.277147 2_1:-16235418 None:intergenic
CACCAAAGATGAAGAAATTA+AGG 0.291999 2_1:+16236130 Msa0197880:CDS
ATATTCGATTTATCAGCTTT+TGG 0.300457 2_1:-16235693 None:intergenic
AGCATAACCAAAATGAAATA+TGG 0.322617 2_1:+16235858 Msa0197880:CDS
TTCCTATGGTTGGCGCCAAC+CGG 0.393227 2_1:+16234736 None:intergenic
GAAAGCACTGATGTGGTCTC+TGG 0.402489 2_1:+16236032 Msa0197880:CDS
GTGATAAGGTCATGCCTGTT+AGG 0.415652 2_1:+16235404 Msa0197880:CDS
ACAATGGTGGATTGAGAAAC+AGG 0.418721 2_1:+16235733 Msa0197880:CDS
AAAAGGCAACATAGACAGTA+TGG 0.427289 2_1:+16235815 Msa0197880:CDS
CCTCAAGTTCATGAATCGTT+TGG 0.434053 2_1:-16235101 None:intergenic
AAAAGCAGAATCACAATTGA+AGG 0.437230 2_1:+16235507 Msa0197880:CDS
TATGGCTGGGAACCGAAAAC+CGG 0.449172 2_1:+16235833 Msa0197880:CDS
AGAAGGCTTAAAGCAATTCT+CGG 0.473398 2_1:+16235644 Msa0197880:CDS
GAGGAGCTCATCTTATCAAA+TGG 0.475247 2_1:+16235120 Msa0197880:CDS
CGCAACAGTTGCAATTCTGT+TGG 0.479391 2_1:-16235359 None:intergenic
CATCAATAAAATCCGATGAT+AGG 0.480394 2_1:+16236474 Msa0197880:CDS
TTTAGAGTCTTCATCAGCAT+TGG 0.483845 2_1:-16235988 None:intergenic
TGGAGATACTGAAAATGCAT+TGG 0.489587 2_1:-16235673 None:intergenic
AGTTGCGAATTTCCTATGGT+TGG 0.496238 2_1:+16234726 None:intergenic
TCTCAGACTCTGTAAGTTAG+TGG 0.498944 2_1:-16236741 None:intergenic
GGCAACATAGACAGTATGGC+TGG 0.502574 2_1:+16235819 Msa0197880:CDS
TTTCCAACGGTAGATCCTCT+TGG 0.502837 2_1:-16235768 None:intergenic
TGATGCATTGACAAAGGCTA+TGG 0.508671 2_1:+16236397 Msa0197880:CDS
ATGGAAAGATGAAAGTGATA+AGG 0.511209 2_1:+16235390 Msa0197880:CDS
CAAAGGCTATGGAAGTAGAA+TGG 0.511214 2_1:+16236408 Msa0197880:CDS
CTTTATGAAGAGAAAATTGG+AGG 0.512076 2_1:+16236638 Msa0197880:three_prime_UTR
CAACTGTTGCGGCTAATGAA+TGG 0.512914 2_1:+16235371 Msa0197880:CDS
CTTCTCTGTATGTACAGAGT+TGG 0.523530 2_1:-16236765 None:intergenic
AGATACTTGGGTCTTCCGGT+TGG 0.529391 2_1:-16234751 None:intergenic
TAAAATTTCAGGAGGAGAAG+AGG 0.539106 2_1:+16235299 Msa0197880:intron
AAGCCACCGGCAAAAGATTG+TGG 0.540851 2_1:+16235062 Msa0197880:CDS
AGAAGAAAGAAAGATTATGC+AGG 0.548152 2_1:+16235435 Msa0197880:CDS
TTCCGGTTGGCGCCAACCAT+AGG 0.553056 2_1:-16234738 None:intergenic
CACTAGAGAGGGAATTAGCA+AGG 0.557388 2_1:+16235323 Msa0197880:CDS
CAACAGAATTGCAACTGTTG+CGG 0.557551 2_1:+16235360 Msa0197880:CDS
TTAAGTTTCGTAACGAACAA+TGG 0.569896 2_1:+16235717 Msa0197880:CDS
CAATAAAATCCGATGATAGG+AGG 0.573485 2_1:+16236477 Msa0197880:CDS
TTATGCAGGCAGAGATGCAA+AGG 0.590511 2_1:+16235449 Msa0197880:CDS
AGGAGAAGAGGACACTAGAG+AGG 0.591941 2_1:+16235311 Msa0197880:CDS
CGCAGGATAAACTGAAGCTG+AGG 0.593606 2_1:+16235607 Msa0197880:intron
CCAAACGATTCATGAACTTG+AGG 0.595747 2_1:+16235101 Msa0197880:CDS
ATGGCTGGGAACCGAAAACC+GGG 0.599697 2_1:+16235834 Msa0197880:CDS
GAAAGTTGATGCATTGACAA+AGG 0.609150 2_1:+16236391 Msa0197880:CDS
AGGTCATGCCTGTTAGGCAA+TGG 0.612732 2_1:+16235410 Msa0197880:CDS
TGATTTAGAAAGCACTGATG+TGG 0.627887 2_1:+16236025 Msa0197880:CDS
AGTTTCGTAACGAACAATGG+TGG 0.630214 2_1:+16235720 Msa0197880:CDS
CAACCAAGAGGATCTACCGT+TGG 0.630663 2_1:+16235765 Msa0197880:CDS
GTAATCACGAATGAGATTAG+CGG 0.635687 2_1:-16235148 None:intergenic
GCAACATAGACAGTATGGCT+GGG 0.648667 2_1:+16235820 Msa0197880:CDS
ATCACGAATGAGATTAGCGG+TGG 0.652339 2_1:-16235145 None:intergenic
TTGGAACAAAGTGTTTCCAA+CGG 0.656799 2_1:-16235781 None:intergenic
GGAGAAGAGGACACTAGAGA+GGG 0.660251 2_1:+16235312 Msa0197880:CDS
AAATCTTAGAGAAAAGCCAC+CGG 0.668990 2_1:+16235049 Msa0197880:CDS
AATGAGATACAGGTGAACAC+AGG 0.676366 2_1:+16235954 Msa0197880:CDS
ACTAGAGAGGGAATTAGCAA+GGG 0.681716 2_1:+16235324 Msa0197880:CDS
AGGTCTACATCACAACCAAG+AGG 0.700161 2_1:+16235753 Msa0197880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTATTTTTTTCTATGT+AGG + chr2_1:16235530-16235549 Msa0197880:intron 10.0%
!!! TAATTTATTTTTTTCTATGT+AGG + chr2_1:16235530-16235549 Msa0197880:intron 10.0%
!!! TTTAGTTCTATGTAACAAAA+GGG - chr2_1:16236339-16236358 None:intergenic 20.0%
!! ATTCTTTATGAAGAGAAAAT+TGG + chr2_1:16236635-16236654 Msa0197880:three_prime_UTR 20.0%
!!! TTTAGTTCTATGTAACAAAA+GGG - chr2_1:16236339-16236358 None:intergenic 20.0%
!! ATTCTTTATGAAGAGAAAAT+TGG + chr2_1:16236635-16236654 Msa0197880:three_prime_UTR 20.0%
!!! TAATGTTCAAACCGATTTTA+TGG - chr2_1:16234824-16234843 None:intergenic 25.0%
!!! TGGTTTTAGCATAAAATTTC+AGG + chr2_1:16235288-16235307 Msa0197880:intron 25.0%
!! TTTTAGCATAAAATTTCAGG+AGG + chr2_1:16235291-16235310 Msa0197880:intron 25.0%
!! ATATTCGATTTATCAGCTTT+TGG - chr2_1:16235696-16235715 None:intergenic 25.0%
! AGCATAACCAAAATGAAATA+TGG + chr2_1:16235858-16235877 Msa0197880:CDS 25.0%
!!! ACCTTTTTTCAACACATTTT+CGG - chr2_1:16235889-16235908 None:intergenic 25.0%
!! ATGTGTTGAAAAAAGGTATA+TGG + chr2_1:16235892-16235911 Msa0197880:CDS 25.0%
!! TGTGTTGAAAAAAGGTATAT+GGG + chr2_1:16235893-16235912 Msa0197880:CDS 25.0%
!! TCAAGAAACAAATTTTCTGA+TGG + chr2_1:16235918-16235937 Msa0197880:CDS 25.0%
! TGAAAAAGAAAATGAGATAC+AGG + chr2_1:16235944-16235963 Msa0197880:CDS 25.0%
! AAAAAGAAGTCATCAATTTG+AGG + chr2_1:16236075-16236094 Msa0197880:CDS 25.0%
! TACCTTAATTTCTTCATCTT+TGG - chr2_1:16236135-16236154 None:intergenic 25.0%
! CAAAAAAAGAAGTCAGATAA+CGG - chr2_1:16236253-16236272 None:intergenic 25.0%
!!! CTTTAGTTCTATGTAACAAA+AGG - chr2_1:16236340-16236359 None:intergenic 25.0%
! AGGTTAACTATAGAAGTAAA+AGG - chr2_1:16236569-16236588 None:intergenic 25.0%
!! GTAATTTTATAGCATTGTTC+AGG - chr2_1:16236589-16236608 None:intergenic 25.0%
! AATGCTATAAAATTACTGCA+GGG + chr2_1:16236593-16236612 Msa0197880:intron 25.0%
!!! TAATGTTCAAACCGATTTTA+TGG - chr2_1:16234824-16234843 None:intergenic 25.0%
!!! TGGTTTTAGCATAAAATTTC+AGG + chr2_1:16235288-16235307 Msa0197880:intron 25.0%
!! TTTTAGCATAAAATTTCAGG+AGG + chr2_1:16235291-16235310 Msa0197880:intron 25.0%
!! ATATTCGATTTATCAGCTTT+TGG - chr2_1:16235696-16235715 None:intergenic 25.0%
! AGCATAACCAAAATGAAATA+TGG + chr2_1:16235858-16235877 Msa0197880:CDS 25.0%
!!! ACCTTTTTTCAACACATTTT+CGG - chr2_1:16235889-16235908 None:intergenic 25.0%
!! ATGTGTTGAAAAAAGGTATA+TGG + chr2_1:16235892-16235911 Msa0197880:CDS 25.0%
!! TGTGTTGAAAAAAGGTATAT+GGG + chr2_1:16235893-16235912 Msa0197880:CDS 25.0%
!! TCAAGAAACAAATTTTCTGA+TGG + chr2_1:16235918-16235937 Msa0197880:CDS 25.0%
! TGAAAAAGAAAATGAGATAC+AGG + chr2_1:16235944-16235963 Msa0197880:CDS 25.0%
! AAAAAGAAGTCATCAATTTG+AGG + chr2_1:16236075-16236094 Msa0197880:CDS 25.0%
! TACCTTAATTTCTTCATCTT+TGG - chr2_1:16236135-16236154 None:intergenic 25.0%
! CAAAAAAAGAAGTCAGATAA+CGG - chr2_1:16236253-16236272 None:intergenic 25.0%
!!! CTTTAGTTCTATGTAACAAA+AGG - chr2_1:16236340-16236359 None:intergenic 25.0%
! AGGTTAACTATAGAAGTAAA+AGG - chr2_1:16236569-16236588 None:intergenic 25.0%
!! GTAATTTTATAGCATTGTTC+AGG - chr2_1:16236589-16236608 None:intergenic 25.0%
! AATGCTATAAAATTACTGCA+GGG + chr2_1:16236593-16236612 Msa0197880:intron 25.0%
!! TCAAACCGATTTTATGGAAA+TGG - chr2_1:16234818-16234837 None:intergenic 30.0%
! TGTTATGACTACTTGCATTT+TGG + chr2_1:16235213-16235232 Msa0197880:intron 30.0%
! TTTTGGACTAACTTTTGCAT+AGG + chr2_1:16235230-16235249 Msa0197880:intron 30.0%
GGTTTATCTATACAGTAACA+TGG + chr2_1:16235268-16235287 Msa0197880:intron 30.0%
ATGGAAAGATGAAAGTGATA+AGG + chr2_1:16235390-16235409 Msa0197880:CDS 30.0%
AGAAGAAAGAAAGATTATGC+AGG + chr2_1:16235435-16235454 Msa0197880:CDS 30.0%
AAAAGCAGAATCACAATTGA+AGG + chr2_1:16235507-16235526 Msa0197880:CDS 30.0%
!! ATACGGTATTTATTTTTCGC+AGG + chr2_1:16235590-16235609 Msa0197880:intron 30.0%
TTAAGTTTCGTAACGAACAA+TGG + chr2_1:16235717-16235736 Msa0197880:CDS 30.0%
TTCCAAAAGCCAAACATAAA+AGG + chr2_1:16235798-16235817 Msa0197880:CDS 30.0%
! TCTATGTTGCCTTTTATGTT+TGG - chr2_1:16235810-16235829 None:intergenic 30.0%
! GGTAGAACCATATTTCATTT+TGG - chr2_1:16235868-16235887 None:intergenic 30.0%
ACCGAAAATGTGTTGAAAAA+AGG + chr2_1:16235885-16235904 Msa0197880:CDS 30.0%
! AGAAACAAATTTTCTGATGG+TGG + chr2_1:16235921-16235940 Msa0197880:CDS 30.0%
CACCAAAGATGAAGAAATTA+AGG + chr2_1:16236130-16236149 Msa0197880:CDS 30.0%
AGATGAAGAAATTAAGGTAC+TGG + chr2_1:16236136-16236155 Msa0197880:intron 30.0%
TTGTCAATCGTAGAAAATAG+TGG + chr2_1:16236182-16236201 Msa0197880:intron 30.0%
AAGATTTCAACAAATCGCTA+TGG - chr2_1:16236296-16236315 None:intergenic 30.0%
CATCAATAAAATCCGATGAT+AGG + chr2_1:16236474-16236493 Msa0197880:CDS 30.0%
GAAGTTCAAACTTCTCTAAA+AGG + chr2_1:16236507-16236526 Msa0197880:CDS 30.0%
CAATGCTATAAAATTACTGC+AGG + chr2_1:16236592-16236611 Msa0197880:intron 30.0%
CTTTATGAAGAGAAAATTGG+AGG + chr2_1:16236638-16236657 Msa0197880:three_prime_UTR 30.0%
!! TCAAACCGATTTTATGGAAA+TGG - chr2_1:16234818-16234837 None:intergenic 30.0%
! TGTTATGACTACTTGCATTT+TGG + chr2_1:16235213-16235232 Msa0197880:intron 30.0%
! TTTTGGACTAACTTTTGCAT+AGG + chr2_1:16235230-16235249 Msa0197880:intron 30.0%
GGTTTATCTATACAGTAACA+TGG + chr2_1:16235268-16235287 Msa0197880:intron 30.0%
ATGGAAAGATGAAAGTGATA+AGG + chr2_1:16235390-16235409 Msa0197880:CDS 30.0%
AGAAGAAAGAAAGATTATGC+AGG + chr2_1:16235435-16235454 Msa0197880:CDS 30.0%
AAAAGCAGAATCACAATTGA+AGG + chr2_1:16235507-16235526 Msa0197880:CDS 30.0%
!! ATACGGTATTTATTTTTCGC+AGG + chr2_1:16235590-16235609 Msa0197880:intron 30.0%
TTAAGTTTCGTAACGAACAA+TGG + chr2_1:16235717-16235736 Msa0197880:CDS 30.0%
TTCCAAAAGCCAAACATAAA+AGG + chr2_1:16235798-16235817 Msa0197880:CDS 30.0%
! TCTATGTTGCCTTTTATGTT+TGG - chr2_1:16235810-16235829 None:intergenic 30.0%
! GGTAGAACCATATTTCATTT+TGG - chr2_1:16235868-16235887 None:intergenic 30.0%
ACCGAAAATGTGTTGAAAAA+AGG + chr2_1:16235885-16235904 Msa0197880:CDS 30.0%
! AGAAACAAATTTTCTGATGG+TGG + chr2_1:16235921-16235940 Msa0197880:CDS 30.0%
CACCAAAGATGAAGAAATTA+AGG + chr2_1:16236130-16236149 Msa0197880:CDS 30.0%
AGATGAAGAAATTAAGGTAC+TGG + chr2_1:16236136-16236155 Msa0197880:intron 30.0%
TTGTCAATCGTAGAAAATAG+TGG + chr2_1:16236182-16236201 Msa0197880:intron 30.0%
AAGATTTCAACAAATCGCTA+TGG - chr2_1:16236296-16236315 None:intergenic 30.0%
CATCAATAAAATCCGATGAT+AGG + chr2_1:16236474-16236493 Msa0197880:CDS 30.0%
GAAGTTCAAACTTCTCTAAA+AGG + chr2_1:16236507-16236526 Msa0197880:CDS 30.0%
CAATGCTATAAAATTACTGC+AGG + chr2_1:16236592-16236611 Msa0197880:intron 30.0%
CTTTATGAAGAGAAAATTGG+AGG + chr2_1:16236638-16236657 Msa0197880:three_prime_UTR 30.0%
! TTTTAGATACTTGGGTCTTC+CGG - chr2_1:16234758-16234777 None:intergenic 35.0%
ACCCAAGTATCTAAAAGGAA+GGG + chr2_1:16234762-16234781 Msa0197880:intron 35.0%
! TCCCTTCCTTTTAGATACTT+GGG - chr2_1:16234766-16234785 None:intergenic 35.0%
ACACGCCATTTCCATAAAAT+CGG + chr2_1:16234810-16234829 Msa0197880:intron 35.0%
!!! TTTGCTTCAAGGTTTTGAGT+TGG - chr2_1:16234893-16234912 None:intergenic 35.0%
AAATCTTAGAGAAAAGCCAC+CGG + chr2_1:16235049-16235068 Msa0197880:CDS 35.0%
GTAATCACGAATGAGATTAG+CGG - chr2_1:16235151-16235170 None:intergenic 35.0%
! CATAGGAATTTTGCATCTAC+TGG + chr2_1:16235247-16235266 Msa0197880:intron 35.0%
TAAAATTTCAGGAGGAGAAG+AGG + chr2_1:16235299-16235318 Msa0197880:intron 35.0%
!!! TTTTGCTGTTCTCTCTGATA+TGG - chr2_1:16235491-16235510 None:intergenic 35.0%
AGAAGGCTTAAAGCAATTCT+CGG + chr2_1:16235644-16235663 Msa0197880:CDS 35.0%
TGGAGATACTGAAAATGCAT+TGG - chr2_1:16235676-16235695 None:intergenic 35.0%
! TTGGAACAAAGTGTTTCCAA+CGG - chr2_1:16235784-16235803 None:intergenic 35.0%
!!! TGCCTTTTATGTTTGGCTTT+TGG - chr2_1:16235803-16235822 None:intergenic 35.0%
AAAAGGCAACATAGACAGTA+TGG + chr2_1:16235815-16235834 Msa0197880:CDS 35.0%
!!! TTCATTTTGGTTATGCTACC+CGG - chr2_1:16235855-16235874 None:intergenic 35.0%
! TTTAGAGTCTTCATCAGCAT+TGG - chr2_1:16235991-16236010 None:intergenic 35.0%
!! TGATTTAGAAAGCACTGATG+TGG + chr2_1:16236025-16236044 Msa0197880:CDS 35.0%
!! GAAAGTTGATGCATTGACAA+AGG + chr2_1:16236391-16236410 Msa0197880:CDS 35.0%
CAATAAAATCCGATGATAGG+AGG + chr2_1:16236477-16236496 Msa0197880:CDS 35.0%
! TTTTAGATACTTGGGTCTTC+CGG - chr2_1:16234758-16234777 None:intergenic 35.0%
ACCCAAGTATCTAAAAGGAA+GGG + chr2_1:16234762-16234781 Msa0197880:intron 35.0%
! TCCCTTCCTTTTAGATACTT+GGG - chr2_1:16234766-16234785 None:intergenic 35.0%
ACACGCCATTTCCATAAAAT+CGG + chr2_1:16234810-16234829 Msa0197880:intron 35.0%
!!! TTTGCTTCAAGGTTTTGAGT+TGG - chr2_1:16234893-16234912 None:intergenic 35.0%
AAATCTTAGAGAAAAGCCAC+CGG + chr2_1:16235049-16235068 Msa0197880:CDS 35.0%
GTAATCACGAATGAGATTAG+CGG - chr2_1:16235151-16235170 None:intergenic 35.0%
! CATAGGAATTTTGCATCTAC+TGG + chr2_1:16235247-16235266 Msa0197880:intron 35.0%
TAAAATTTCAGGAGGAGAAG+AGG + chr2_1:16235299-16235318 Msa0197880:intron 35.0%
!!! TTTTGCTGTTCTCTCTGATA+TGG - chr2_1:16235491-16235510 None:intergenic 35.0%
AGAAGGCTTAAAGCAATTCT+CGG + chr2_1:16235644-16235663 Msa0197880:CDS 35.0%
TGGAGATACTGAAAATGCAT+TGG - chr2_1:16235676-16235695 None:intergenic 35.0%
! TTGGAACAAAGTGTTTCCAA+CGG - chr2_1:16235784-16235803 None:intergenic 35.0%
!!! TGCCTTTTATGTTTGGCTTT+TGG - chr2_1:16235803-16235822 None:intergenic 35.0%
AAAAGGCAACATAGACAGTA+TGG + chr2_1:16235815-16235834 Msa0197880:CDS 35.0%
!!! TTCATTTTGGTTATGCTACC+CGG - chr2_1:16235855-16235874 None:intergenic 35.0%
! TTTAGAGTCTTCATCAGCAT+TGG - chr2_1:16235991-16236010 None:intergenic 35.0%
!! TGATTTAGAAAGCACTGATG+TGG + chr2_1:16236025-16236044 Msa0197880:CDS 35.0%
!! GAAAGTTGATGCATTGACAA+AGG + chr2_1:16236391-16236410 Msa0197880:CDS 35.0%
CAATAAAATCCGATGATAGG+AGG + chr2_1:16236477-16236496 Msa0197880:CDS 35.0%
GGAAGACCCAAGTATCTAAA+AGG + chr2_1:16234757-16234776 Msa0197880:intron 40.0%
GACCCAAGTATCTAAAAGGA+AGG + chr2_1:16234761-16234780 Msa0197880:intron 40.0%
! CTCCCTTCCTTTTAGATACT+TGG - chr2_1:16234767-16234786 None:intergenic 40.0%
TGCGAAGAGTTGTTTGATTG+TGG - chr2_1:16234848-16234867 None:intergenic 40.0%
!!! TCAAGGTTTTGAGTTGGCTT+CGG - chr2_1:16234887-16234906 None:intergenic 40.0%
! CAACTTCCACAATCTTTTGC+CGG - chr2_1:16235071-16235090 None:intergenic 40.0%
CCTCAAGTTCATGAATCGTT+TGG - chr2_1:16235104-16235123 None:intergenic 40.0%
CCAAACGATTCATGAACTTG+AGG + chr2_1:16235101-16235120 Msa0197880:CDS 40.0%
GAGGAGCTCATCTTATCAAA+TGG + chr2_1:16235120-16235139 Msa0197880:CDS 40.0%
CAGATTTCTGAGTTGCAAGT+AGG + chr2_1:16235177-16235196 Msa0197880:intron 40.0%
ACTAGAGAGGGAATTAGCAA+GGG + chr2_1:16235324-16235343 Msa0197880:CDS 40.0%
CAACAGAATTGCAACTGTTG+CGG + chr2_1:16235360-16235379 Msa0197880:CDS 40.0%
TCTTCTAACCATTGCCTAAC+AGG - chr2_1:16235421-16235440 None:intergenic 40.0%
AGGCTAAAAACGCTTGAAGA+AGG + chr2_1:16235627-16235646 Msa0197880:CDS 40.0%
AGTTTCGTAACGAACAATGG+TGG + chr2_1:16235720-16235739 Msa0197880:CDS 40.0%
!! ACAATGGTGGATTGAGAAAC+AGG + chr2_1:16235733-16235752 Msa0197880:CDS 40.0%
AATGAGATACAGGTGAACAC+AGG + chr2_1:16235954-16235973 Msa0197880:CDS 40.0%
CGATTGACAACTCTGATATG+AGG - chr2_1:16236172-16236191 None:intergenic 40.0%
! TGATGCATTGACAAAGGCTA+TGG + chr2_1:16236397-16236416 Msa0197880:CDS 40.0%
CAAAGGCTATGGAAGTAGAA+TGG + chr2_1:16236408-16236427 Msa0197880:CDS 40.0%
!! TCTGCTTTTCCTCCTATCAT+CGG - chr2_1:16236489-16236508 None:intergenic 40.0%
TCTCAGACTCTGTAAGTTAG+TGG - chr2_1:16236744-16236763 None:intergenic 40.0%
CTTCTCTGTATGTACAGAGT+TGG - chr2_1:16236768-16236787 None:intergenic 40.0%
GGAAGACCCAAGTATCTAAA+AGG + chr2_1:16234757-16234776 Msa0197880:intron 40.0%
GACCCAAGTATCTAAAAGGA+AGG + chr2_1:16234761-16234780 Msa0197880:intron 40.0%
! CTCCCTTCCTTTTAGATACT+TGG - chr2_1:16234767-16234786 None:intergenic 40.0%
TGCGAAGAGTTGTTTGATTG+TGG - chr2_1:16234848-16234867 None:intergenic 40.0%
!!! TCAAGGTTTTGAGTTGGCTT+CGG - chr2_1:16234887-16234906 None:intergenic 40.0%
! CAACTTCCACAATCTTTTGC+CGG - chr2_1:16235071-16235090 None:intergenic 40.0%
CCTCAAGTTCATGAATCGTT+TGG - chr2_1:16235104-16235123 None:intergenic 40.0%
CCAAACGATTCATGAACTTG+AGG + chr2_1:16235101-16235120 Msa0197880:CDS 40.0%
GAGGAGCTCATCTTATCAAA+TGG + chr2_1:16235120-16235139 Msa0197880:CDS 40.0%
CAGATTTCTGAGTTGCAAGT+AGG + chr2_1:16235177-16235196 Msa0197880:intron 40.0%
ACTAGAGAGGGAATTAGCAA+GGG + chr2_1:16235324-16235343 Msa0197880:CDS 40.0%
CAACAGAATTGCAACTGTTG+CGG + chr2_1:16235360-16235379 Msa0197880:CDS 40.0%
TCTTCTAACCATTGCCTAAC+AGG - chr2_1:16235421-16235440 None:intergenic 40.0%
AGGCTAAAAACGCTTGAAGA+AGG + chr2_1:16235627-16235646 Msa0197880:CDS 40.0%
AGTTTCGTAACGAACAATGG+TGG + chr2_1:16235720-16235739 Msa0197880:CDS 40.0%
!! ACAATGGTGGATTGAGAAAC+AGG + chr2_1:16235733-16235752 Msa0197880:CDS 40.0%
AATGAGATACAGGTGAACAC+AGG + chr2_1:16235954-16235973 Msa0197880:CDS 40.0%
CGATTGACAACTCTGATATG+AGG - chr2_1:16236172-16236191 None:intergenic 40.0%
! TGATGCATTGACAAAGGCTA+TGG + chr2_1:16236397-16236416 Msa0197880:CDS 40.0%
CAAAGGCTATGGAAGTAGAA+TGG + chr2_1:16236408-16236427 Msa0197880:CDS 40.0%
!! TCTGCTTTTCCTCCTATCAT+CGG - chr2_1:16236489-16236508 None:intergenic 40.0%
TCTCAGACTCTGTAAGTTAG+TGG - chr2_1:16236744-16236763 None:intergenic 40.0%
CTTCTCTGTATGTACAGAGT+TGG - chr2_1:16236768-16236787 None:intergenic 40.0%
AGCTTCCTACATTGTTCGCA+AGG - chr2_1:16234790-16234809 None:intergenic 45.0%
!!! AAGGTTTTGAGTTGGCTTCG+GGG - chr2_1:16234885-16234904 None:intergenic 45.0%
!!! CAAGGTTTTGAGTTGGCTTC+GGG - chr2_1:16234886-16234905 None:intergenic 45.0%
ACTCGCAAAGCTTTGCTTCA+AGG - chr2_1:16234904-16234923 None:intergenic 45.0%
ATCACGAATGAGATTAGCGG+TGG - chr2_1:16235148-16235167 None:intergenic 45.0%
CACTAGAGAGGGAATTAGCA+AGG + chr2_1:16235323-16235342 Msa0197880:CDS 45.0%
CGCAACAGTTGCAATTCTGT+TGG - chr2_1:16235362-16235381 None:intergenic 45.0%
CAACTGTTGCGGCTAATGAA+TGG + chr2_1:16235371-16235390 Msa0197880:CDS 45.0%
GTGATAAGGTCATGCCTGTT+AGG + chr2_1:16235404-16235423 Msa0197880:CDS 45.0%
TTATGCAGGCAGAGATGCAA+AGG + chr2_1:16235449-16235468 Msa0197880:CDS 45.0%
AGGTCTACATCACAACCAAG+AGG + chr2_1:16235753-16235772 Msa0197880:CDS 45.0%
TTTCCAACGGTAGATCCTCT+TGG - chr2_1:16235771-16235790 None:intergenic 45.0%
GCAACATAGACAGTATGGCT+GGG + chr2_1:16235820-16235839 Msa0197880:CDS 45.0%
! TGGTTATGCTACCCGGTTTT+CGG - chr2_1:16235848-16235867 None:intergenic 45.0%
AGCTTCCTACATTGTTCGCA+AGG - chr2_1:16234790-16234809 None:intergenic 45.0%
!!! AAGGTTTTGAGTTGGCTTCG+GGG - chr2_1:16234885-16234904 None:intergenic 45.0%
!!! CAAGGTTTTGAGTTGGCTTC+GGG - chr2_1:16234886-16234905 None:intergenic 45.0%
ACTCGCAAAGCTTTGCTTCA+AGG - chr2_1:16234904-16234923 None:intergenic 45.0%
ATCACGAATGAGATTAGCGG+TGG - chr2_1:16235148-16235167 None:intergenic 45.0%
CACTAGAGAGGGAATTAGCA+AGG + chr2_1:16235323-16235342 Msa0197880:CDS 45.0%
CGCAACAGTTGCAATTCTGT+TGG - chr2_1:16235362-16235381 None:intergenic 45.0%
CAACTGTTGCGGCTAATGAA+TGG + chr2_1:16235371-16235390 Msa0197880:CDS 45.0%
GTGATAAGGTCATGCCTGTT+AGG + chr2_1:16235404-16235423 Msa0197880:CDS 45.0%
TTATGCAGGCAGAGATGCAA+AGG + chr2_1:16235449-16235468 Msa0197880:CDS 45.0%
AGGTCTACATCACAACCAAG+AGG + chr2_1:16235753-16235772 Msa0197880:CDS 45.0%
TTTCCAACGGTAGATCCTCT+TGG - chr2_1:16235771-16235790 None:intergenic 45.0%
GCAACATAGACAGTATGGCT+GGG + chr2_1:16235820-16235839 Msa0197880:CDS 45.0%
! TGGTTATGCTACCCGGTTTT+CGG - chr2_1:16235848-16235867 None:intergenic 45.0%
!!! TAGTAATAAATAATTTTATA+CGG + chr2_1:16235573-16235592 Msa0197880:intron 5.0%
!!! TAGTAATAAATAATTTTATA+CGG + chr2_1:16235573-16235592 Msa0197880:intron 5.0%
AGATACTTGGGTCTTCCGGT+TGG - chr2_1:16234754-16234773 None:intergenic 50.0%
AAGCCACCGGCAAAAGATTG+TGG + chr2_1:16235062-16235081 Msa0197880:CDS 50.0%
! CTTCCACAATCTTTTGCCGG+TGG - chr2_1:16235068-16235087 None:intergenic 50.0%
AGGAGAAGAGGACACTAGAG+AGG + chr2_1:16235311-16235330 Msa0197880:CDS 50.0%
GGAGAAGAGGACACTAGAGA+GGG + chr2_1:16235312-16235331 Msa0197880:CDS 50.0%
AGGTCATGCCTGTTAGGCAA+TGG + chr2_1:16235410-16235429 Msa0197880:CDS 50.0%
CGCAGGATAAACTGAAGCTG+AGG + chr2_1:16235607-16235626 Msa0197880:intron 50.0%
CAACCAAGAGGATCTACCGT+TGG + chr2_1:16235765-16235784 Msa0197880:CDS 50.0%
GGCAACATAGACAGTATGGC+TGG + chr2_1:16235819-16235838 Msa0197880:CDS 50.0%
TATGGCTGGGAACCGAAAAC+CGG + chr2_1:16235833-16235852 Msa0197880:CDS 50.0%
!! GAAAGCACTGATGTGGTCTC+TGG + chr2_1:16236032-16236051 Msa0197880:CDS 50.0%
AGATACTTGGGTCTTCCGGT+TGG - chr2_1:16234754-16234773 None:intergenic 50.0%
AAGCCACCGGCAAAAGATTG+TGG + chr2_1:16235062-16235081 Msa0197880:CDS 50.0%
! CTTCCACAATCTTTTGCCGG+TGG - chr2_1:16235068-16235087 None:intergenic 50.0%
AGGAGAAGAGGACACTAGAG+AGG + chr2_1:16235311-16235330 Msa0197880:CDS 50.0%
GGAGAAGAGGACACTAGAGA+GGG + chr2_1:16235312-16235331 Msa0197880:CDS 50.0%
AGGTCATGCCTGTTAGGCAA+TGG + chr2_1:16235410-16235429 Msa0197880:CDS 50.0%
CGCAGGATAAACTGAAGCTG+AGG + chr2_1:16235607-16235626 Msa0197880:intron 50.0%
CAACCAAGAGGATCTACCGT+TGG + chr2_1:16235765-16235784 Msa0197880:CDS 50.0%
GGCAACATAGACAGTATGGC+TGG + chr2_1:16235819-16235838 Msa0197880:CDS 50.0%
TATGGCTGGGAACCGAAAAC+CGG + chr2_1:16235833-16235852 Msa0197880:CDS 50.0%
!! GAAAGCACTGATGTGGTCTC+TGG + chr2_1:16236032-16236051 Msa0197880:CDS 50.0%
GGGAGCCTTGCGAACAATGT+AGG + chr2_1:16234782-16234801 Msa0197880:intron 55.0%
ATGGCTGGGAACCGAAAACC+GGG + chr2_1:16235834-16235853 Msa0197880:CDS 55.0%
GGGAGCCTTGCGAACAATGT+AGG + chr2_1:16234782-16234801 Msa0197880:intron 55.0%
ATGGCTGGGAACCGAAAACC+GGG + chr2_1:16235834-16235853 Msa0197880:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 16234741 16236837 16234741 ID=Msa0197880;Name=Msa0197880
chr2_1 mRNA 16234741 16236837 16234741 ID=Msa0197880-mRNA-1;Parent=Msa0197880;Name=Msa0197880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.8|0.83|0.83|1|1|6|205|369
chr2_1 exon 16234741 16234767 16234741 ID=Msa0197880-mRNA-1:exon:6745;Parent=Msa0197880-mRNA-1
chr2_1 exon 16235039 16235194 16235039 ID=Msa0197880-mRNA-1:exon:6746;Parent=Msa0197880-mRNA-1
chr2_1 exon 16235310 16235528 16235310 ID=Msa0197880-mRNA-1:exon:6747;Parent=Msa0197880-mRNA-1
chr2_1 exon 16235612 16236151 16235612 ID=Msa0197880-mRNA-1:exon:6748;Parent=Msa0197880-mRNA-1
chr2_1 exon 16236380 16236528 16236380 ID=Msa0197880-mRNA-1:exon:6749;Parent=Msa0197880-mRNA-1
chr2_1 exon 16236614 16236837 16236614 ID=Msa0197880-mRNA-1:exon:6750;Parent=Msa0197880-mRNA-1
chr2_1 CDS 16234741 16234767 16234741 ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1
chr2_1 CDS 16235039 16235194 16235039 ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1
chr2_1 CDS 16235310 16235528 16235310 ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1
chr2_1 CDS 16235612 16236151 16235612 ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1
chr2_1 CDS 16236380 16236528 16236380 ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1
chr2_1 CDS 16236614 16236632 16236614 ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1
chr2_1 three_prime_UTR 16236633 16236837 16236633 ID=Msa0197880-mRNA-1:three_prime_utr;Parent=Msa0197880-mRNA-1
Gene Sequence

>Msa0197880

ATGGTTGGCGCCAACCGGAAGACCCAAGAGGAGAACAAAATCTTAGAGAAAAGCCACCGGCAAAAGATTGTGGAAGTTGAGAAACTTAGCCAAACGATTCATGAACTTGAGGAGCTCATCTTATCAAATGGAGCCACCGCTAATCTCATTCGTGATTACAAGCGACAGATTTCTGAGTTGCAAGAGGAGAAGAGGACACTAGAGAGGGAATTAGCAAGGGTAAAAGTTTCTGCCAACAGAATTGCAACTGTTGCGGCTAATGAATGGAAAGATGAAAGTGATAAGGTCATGCCTGTTAGGCAATGGTTAGAAGAAAGAAAGATTATGCAGGCAGAGATGCAAAGGTTGAAAGAAAAGCTTGCCATATCAGAGAGAACAGCAAAAGCAGAATCACAATTGAAGGATAAACTGAAGCTGAGGCTAAAAACGCTTGAAGAAGGCTTAAAGCAATTCTCGGTCAATTCCAATGCATTTTCAGTATCTCCAAAAGCTGATAAATCGAATATCTTAAGTTTCGTAACGAACAATGGTGGATTGAGAAACAGGTCTACATCACAACCAAGAGGATCTACCGTTGGAAACACTTTGTTCCAAAAGCCAAACATAAAAGGCAACATAGACAGTATGGCTGGGAACCGAAAACCGGGTAGCATAACCAAAATGAAATATGGTTCTACCGAAAATGTGTTGAAAAAAGGTATATGGGCGTCAAGAAACAAATTTTCTGATGGTGGTGAAAAAGAAAATGAGATACAGGTGAACACAGGCAGTGTTAAAACCAATGCTGATGAAGACTCTAAAAGTAATAGCAGCAATGATTTAGAAAGCACTGATGTGGTCTCTGGATTTTTATATGATAAGCTTCAAAAAGAAGTCATCAATTTGAGGAAGACTTGTGAAACAAAAGACAATACTCTGCACACCAAAGATGAAGAAATTAAGATGCTCACAAAGAAAGTTGATGCATTGACAAAGGCTATGGAAGTAGAATGGAAAAAAATGAAAAGAGAAATAGCTGCAAGAGAGAAAGAAGTTGCATCAATAAAATCCGATGATAGGAGGAAAAGCAGAAGTTCAAACTTCTCTAAAAGGGTGATGAAAGAACATTGA

Protein sequence

>Msa0197880

MVGANRKTQEENKILEKSHRQKIVEVEKLSQTIHELEELILSNGATANLIRDYKRQISELQEEKRTLERELARVKVSANRIATVAANEWKDESDKVMPVRQWLEERKIMQAEMQRLKEKLAISERTAKAESQLKDKLKLRLKTLEEGLKQFSVNSNAFSVSPKADKSNILSFVTNNGGLRNRSTSQPRGSTVGNTLFQKPNIKGNIDSMAGNRKPGSITKMKYGSTENVLKKGIWASRNKFSDGGEKENEIQVNTGSVKTNADEDSKSNSSNDLESTDVVSGFLYDKLQKEVINLRKTCETKDNTLHTKDEEIKMLTKKVDALTKAMEVEWKKMKREIAAREKEVASIKSDDRRKSRSSNFSKRVMKEH*