Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0197880 | XP_013462928.1 | 96.685 | 362 | 12 | 0 | 8 | 369 | 191 | 552 | 0.0 | 708 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0197880 | sp|Q8GYX3|MP705_ARATH | 54.651 | 344 | 110 | 7 | 8 | 346 | 184 | 486 | 1.65e-107 | 327 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0197880 | A0A072V6K1 | 96.685 | 362 | 12 | 0 | 8 | 369 | 191 | 552 | 0.0 | 708 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0048010 | Msa0197880 | 0.809432 | 1.897675e-50 | -8.615850e-47 |
Msa0102870 | Msa0197880 | 0.812136 | 4.934378e-51 | -8.615850e-47 |
Msa0124320 | Msa0197880 | 0.805458 | 1.322065e-49 | -8.615850e-47 |
Msa0141420 | Msa0197880 | 0.803868 | 2.838497e-49 | -8.615850e-47 |
Msa0143850 | Msa0197880 | 0.816130 | 6.480642e-52 | -8.615850e-47 |
Msa0152400 | Msa0197880 | 0.808051 | 3.745015e-50 | -8.615850e-47 |
Msa0197880 | Msa0206840 | 0.818709 | 1.701660e-52 | -8.615850e-47 |
Msa0197880 | Msa0218460 | 0.800752 | 1.243758e-48 | -8.615850e-47 |
Msa0197880 | Msa0220730 | 0.803780 | 2.960493e-49 | -8.615850e-47 |
Msa0197880 | Msa0225220 | 0.817509 | 3.178755e-52 | -8.615850e-47 |
Msa0197880 | Msa0239650 | 0.810480 | 1.128648e-50 | -8.615850e-47 |
Msa0197880 | Msa0277650 | 0.832758 | 7.873420e-56 | -8.615850e-47 |
Msa0197880 | Msa0317240 | 0.868594 | 5.812378e-66 | -8.615850e-47 |
Msa0197880 | Msa0342010 | 0.807785 | 4.266413e-50 | -8.615850e-47 |
Msa0197880 | Msa0346060 | 0.809563 | 1.778559e-50 | -8.615850e-47 |
Msa0197880 | Msa0411410 | 0.805131 | 1.547905e-49 | -8.615850e-47 |
Msa0197880 | Msa0527610 | 0.818943 | 1.505801e-52 | -8.615850e-47 |
Msa0197880 | Msa0721280 | 0.805416 | 1.349029e-49 | -8.615850e-47 |
Msa0197880 | Msa0896440 | 0.801701 | 7.952942e-49 | -8.615850e-47 |
Msa0197880 | Msa0900620 | 0.804504 | 2.093095e-49 | -8.615850e-47 |
Msa0197880 | Msa1031930 | 0.800925 | 1.146618e-48 | -8.615850e-47 |
Msa0197880 | Msa1205370 | 0.802578 | 5.250276e-49 | -8.615850e-47 |
Msa0197880 | Msa1208220 | 0.829111 | 6.177931e-55 | -8.615850e-47 |
Msa0197880 | Msa1258170 | 0.821934 | 3.099953e-53 | -8.615850e-47 |
Msa0197880 | Msa1353470 | 0.810181 | 1.309288e-50 | -8.615850e-47 |
Msa0197880 | Msa1357340 | 0.815375 | 9.549521e-52 | -8.615850e-47 |
Msa0197880 | Msa1357890 | 0.801056 | 1.078206e-48 | -8.615850e-47 |
Msa0197880 | Msa1447210 | 0.807199 | 5.679286e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0197880 | MtrunA17_Chr2g0290411 | 96.685 | 362 | 12 | 0 | 8 | 369 | 191 | 552 | 0.0 | 708 |
Msa0197880 | MtrunA17_Chr4g0076251 | 67.109 | 377 | 100 | 4 | 9 | 369 | 205 | 573 | 7.72e-166 | 476 |
Msa0197880 | MtrunA17_Chr8g0344311 | 47.709 | 371 | 158 | 9 | 8 | 362 | 231 | 581 | 2.10e-90 | 283 |
Msa0197880 | MtrunA17_Chr8g0391771 | 46.216 | 370 | 167 | 9 | 8 | 362 | 235 | 587 | 1.99e-88 | 278 |
Msa0197880 | MtrunA17_Chr1g0161371 | 45.845 | 373 | 164 | 10 | 8 | 362 | 230 | 582 | 3.61e-86 | 272 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0197880 | AT4G17220.1 | 54.651 | 344 | 110 | 7 | 8 | 346 | 184 | 486 | 1.68e-108 | 327 |
Msa0197880 | AT1G24764.2 | 45.845 | 373 | 166 | 7 | 8 | 362 | 99 | 453 | 1.72e-92 | 285 |
Msa0197880 | AT1G24764.1 | 45.845 | 373 | 166 | 7 | 8 | 362 | 252 | 606 | 1.22e-90 | 285 |
Msa0197880 | AT1G68060.1 | 48.518 | 371 | 155 | 11 | 8 | 360 | 244 | 596 | 1.77e-90 | 284 |
Msa0197880 | AT1G24764.3 | 45.845 | 373 | 166 | 7 | 8 | 362 | 311 | 665 | 1.22e-89 | 284 |
Msa0197880 | AT2G01750.1 | 45.553 | 371 | 171 | 6 | 8 | 363 | 251 | 605 | 8.57e-88 | 277 |
Msa0197880 | AT2G01750.2 | 45.553 | 371 | 171 | 6 | 8 | 363 | 251 | 605 | 1.03e-87 | 277 |
Msa0197880 | AT1G14840.1 | 44.353 | 363 | 164 | 5 | 8 | 353 | 227 | 568 | 1.69e-85 | 271 |
Msa0197880 | AT1G14840.2 | 41.779 | 371 | 147 | 8 | 8 | 353 | 227 | 553 | 1.48e-70 | 231 |
Find 61 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCTTTATGAAGAGAAAAT+TGG | 0.212662 | 2_1:+16236635 | Msa0197880:three_prime_UTR |
GGTAGAACCATATTTCATTT+TGG | 0.221595 | 2_1:-16235865 | None:intergenic |
TACCTTAATTTCTTCATCTT+TGG | 0.231823 | 2_1:-16236132 | None:intergenic |
TTCCAAAAGCCAAACATAAA+AGG | 0.248082 | 2_1:+16235798 | Msa0197880:CDS |
GAAGTTCAAACTTCTCTAAA+AGG | 0.264788 | 2_1:+16236507 | Msa0197880:CDS |
TCTTCTAACCATTGCCTAAC+AGG | 0.277147 | 2_1:-16235418 | None:intergenic |
CACCAAAGATGAAGAAATTA+AGG | 0.291999 | 2_1:+16236130 | Msa0197880:CDS |
ATATTCGATTTATCAGCTTT+TGG | 0.300457 | 2_1:-16235693 | None:intergenic |
AGCATAACCAAAATGAAATA+TGG | 0.322617 | 2_1:+16235858 | Msa0197880:CDS |
TTCCTATGGTTGGCGCCAAC+CGG | 0.393227 | 2_1:+16234736 | None:intergenic |
GAAAGCACTGATGTGGTCTC+TGG | 0.402489 | 2_1:+16236032 | Msa0197880:CDS |
GTGATAAGGTCATGCCTGTT+AGG | 0.415652 | 2_1:+16235404 | Msa0197880:CDS |
ACAATGGTGGATTGAGAAAC+AGG | 0.418721 | 2_1:+16235733 | Msa0197880:CDS |
AAAAGGCAACATAGACAGTA+TGG | 0.427289 | 2_1:+16235815 | Msa0197880:CDS |
CCTCAAGTTCATGAATCGTT+TGG | 0.434053 | 2_1:-16235101 | None:intergenic |
AAAAGCAGAATCACAATTGA+AGG | 0.437230 | 2_1:+16235507 | Msa0197880:CDS |
TATGGCTGGGAACCGAAAAC+CGG | 0.449172 | 2_1:+16235833 | Msa0197880:CDS |
AGAAGGCTTAAAGCAATTCT+CGG | 0.473398 | 2_1:+16235644 | Msa0197880:CDS |
GAGGAGCTCATCTTATCAAA+TGG | 0.475247 | 2_1:+16235120 | Msa0197880:CDS |
CGCAACAGTTGCAATTCTGT+TGG | 0.479391 | 2_1:-16235359 | None:intergenic |
CATCAATAAAATCCGATGAT+AGG | 0.480394 | 2_1:+16236474 | Msa0197880:CDS |
TTTAGAGTCTTCATCAGCAT+TGG | 0.483845 | 2_1:-16235988 | None:intergenic |
TGGAGATACTGAAAATGCAT+TGG | 0.489587 | 2_1:-16235673 | None:intergenic |
AGTTGCGAATTTCCTATGGT+TGG | 0.496238 | 2_1:+16234726 | None:intergenic |
TCTCAGACTCTGTAAGTTAG+TGG | 0.498944 | 2_1:-16236741 | None:intergenic |
GGCAACATAGACAGTATGGC+TGG | 0.502574 | 2_1:+16235819 | Msa0197880:CDS |
TTTCCAACGGTAGATCCTCT+TGG | 0.502837 | 2_1:-16235768 | None:intergenic |
TGATGCATTGACAAAGGCTA+TGG | 0.508671 | 2_1:+16236397 | Msa0197880:CDS |
ATGGAAAGATGAAAGTGATA+AGG | 0.511209 | 2_1:+16235390 | Msa0197880:CDS |
CAAAGGCTATGGAAGTAGAA+TGG | 0.511214 | 2_1:+16236408 | Msa0197880:CDS |
CTTTATGAAGAGAAAATTGG+AGG | 0.512076 | 2_1:+16236638 | Msa0197880:three_prime_UTR |
CAACTGTTGCGGCTAATGAA+TGG | 0.512914 | 2_1:+16235371 | Msa0197880:CDS |
CTTCTCTGTATGTACAGAGT+TGG | 0.523530 | 2_1:-16236765 | None:intergenic |
AGATACTTGGGTCTTCCGGT+TGG | 0.529391 | 2_1:-16234751 | None:intergenic |
TAAAATTTCAGGAGGAGAAG+AGG | 0.539106 | 2_1:+16235299 | Msa0197880:intron |
AAGCCACCGGCAAAAGATTG+TGG | 0.540851 | 2_1:+16235062 | Msa0197880:CDS |
AGAAGAAAGAAAGATTATGC+AGG | 0.548152 | 2_1:+16235435 | Msa0197880:CDS |
TTCCGGTTGGCGCCAACCAT+AGG | 0.553056 | 2_1:-16234738 | None:intergenic |
CACTAGAGAGGGAATTAGCA+AGG | 0.557388 | 2_1:+16235323 | Msa0197880:CDS |
CAACAGAATTGCAACTGTTG+CGG | 0.557551 | 2_1:+16235360 | Msa0197880:CDS |
TTAAGTTTCGTAACGAACAA+TGG | 0.569896 | 2_1:+16235717 | Msa0197880:CDS |
CAATAAAATCCGATGATAGG+AGG | 0.573485 | 2_1:+16236477 | Msa0197880:CDS |
TTATGCAGGCAGAGATGCAA+AGG | 0.590511 | 2_1:+16235449 | Msa0197880:CDS |
AGGAGAAGAGGACACTAGAG+AGG | 0.591941 | 2_1:+16235311 | Msa0197880:CDS |
CGCAGGATAAACTGAAGCTG+AGG | 0.593606 | 2_1:+16235607 | Msa0197880:intron |
CCAAACGATTCATGAACTTG+AGG | 0.595747 | 2_1:+16235101 | Msa0197880:CDS |
ATGGCTGGGAACCGAAAACC+GGG | 0.599697 | 2_1:+16235834 | Msa0197880:CDS |
GAAAGTTGATGCATTGACAA+AGG | 0.609150 | 2_1:+16236391 | Msa0197880:CDS |
AGGTCATGCCTGTTAGGCAA+TGG | 0.612732 | 2_1:+16235410 | Msa0197880:CDS |
TGATTTAGAAAGCACTGATG+TGG | 0.627887 | 2_1:+16236025 | Msa0197880:CDS |
AGTTTCGTAACGAACAATGG+TGG | 0.630214 | 2_1:+16235720 | Msa0197880:CDS |
CAACCAAGAGGATCTACCGT+TGG | 0.630663 | 2_1:+16235765 | Msa0197880:CDS |
GTAATCACGAATGAGATTAG+CGG | 0.635687 | 2_1:-16235148 | None:intergenic |
GCAACATAGACAGTATGGCT+GGG | 0.648667 | 2_1:+16235820 | Msa0197880:CDS |
ATCACGAATGAGATTAGCGG+TGG | 0.652339 | 2_1:-16235145 | None:intergenic |
TTGGAACAAAGTGTTTCCAA+CGG | 0.656799 | 2_1:-16235781 | None:intergenic |
GGAGAAGAGGACACTAGAGA+GGG | 0.660251 | 2_1:+16235312 | Msa0197880:CDS |
AAATCTTAGAGAAAAGCCAC+CGG | 0.668990 | 2_1:+16235049 | Msa0197880:CDS |
AATGAGATACAGGTGAACAC+AGG | 0.676366 | 2_1:+16235954 | Msa0197880:CDS |
ACTAGAGAGGGAATTAGCAA+GGG | 0.681716 | 2_1:+16235324 | Msa0197880:CDS |
AGGTCTACATCACAACCAAG+AGG | 0.700161 | 2_1:+16235753 | Msa0197880:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTTATTTTTTTCTATGT+AGG | + | chr2_1:16235530-16235549 | Msa0197880:intron | 10.0% |
!!! | TAATTTATTTTTTTCTATGT+AGG | + | chr2_1:16235530-16235549 | Msa0197880:intron | 10.0% |
!!! | TTTAGTTCTATGTAACAAAA+GGG | - | chr2_1:16236339-16236358 | None:intergenic | 20.0% |
!! | ATTCTTTATGAAGAGAAAAT+TGG | + | chr2_1:16236635-16236654 | Msa0197880:three_prime_UTR | 20.0% |
!!! | TTTAGTTCTATGTAACAAAA+GGG | - | chr2_1:16236339-16236358 | None:intergenic | 20.0% |
!! | ATTCTTTATGAAGAGAAAAT+TGG | + | chr2_1:16236635-16236654 | Msa0197880:three_prime_UTR | 20.0% |
!!! | TAATGTTCAAACCGATTTTA+TGG | - | chr2_1:16234824-16234843 | None:intergenic | 25.0% |
!!! | TGGTTTTAGCATAAAATTTC+AGG | + | chr2_1:16235288-16235307 | Msa0197880:intron | 25.0% |
!! | TTTTAGCATAAAATTTCAGG+AGG | + | chr2_1:16235291-16235310 | Msa0197880:intron | 25.0% |
!! | ATATTCGATTTATCAGCTTT+TGG | - | chr2_1:16235696-16235715 | None:intergenic | 25.0% |
! | AGCATAACCAAAATGAAATA+TGG | + | chr2_1:16235858-16235877 | Msa0197880:CDS | 25.0% |
!!! | ACCTTTTTTCAACACATTTT+CGG | - | chr2_1:16235889-16235908 | None:intergenic | 25.0% |
!! | ATGTGTTGAAAAAAGGTATA+TGG | + | chr2_1:16235892-16235911 | Msa0197880:CDS | 25.0% |
!! | TGTGTTGAAAAAAGGTATAT+GGG | + | chr2_1:16235893-16235912 | Msa0197880:CDS | 25.0% |
!! | TCAAGAAACAAATTTTCTGA+TGG | + | chr2_1:16235918-16235937 | Msa0197880:CDS | 25.0% |
! | TGAAAAAGAAAATGAGATAC+AGG | + | chr2_1:16235944-16235963 | Msa0197880:CDS | 25.0% |
! | AAAAAGAAGTCATCAATTTG+AGG | + | chr2_1:16236075-16236094 | Msa0197880:CDS | 25.0% |
! | TACCTTAATTTCTTCATCTT+TGG | - | chr2_1:16236135-16236154 | None:intergenic | 25.0% |
! | CAAAAAAAGAAGTCAGATAA+CGG | - | chr2_1:16236253-16236272 | None:intergenic | 25.0% |
!!! | CTTTAGTTCTATGTAACAAA+AGG | - | chr2_1:16236340-16236359 | None:intergenic | 25.0% |
! | AGGTTAACTATAGAAGTAAA+AGG | - | chr2_1:16236569-16236588 | None:intergenic | 25.0% |
!! | GTAATTTTATAGCATTGTTC+AGG | - | chr2_1:16236589-16236608 | None:intergenic | 25.0% |
! | AATGCTATAAAATTACTGCA+GGG | + | chr2_1:16236593-16236612 | Msa0197880:intron | 25.0% |
!!! | TAATGTTCAAACCGATTTTA+TGG | - | chr2_1:16234824-16234843 | None:intergenic | 25.0% |
!!! | TGGTTTTAGCATAAAATTTC+AGG | + | chr2_1:16235288-16235307 | Msa0197880:intron | 25.0% |
!! | TTTTAGCATAAAATTTCAGG+AGG | + | chr2_1:16235291-16235310 | Msa0197880:intron | 25.0% |
!! | ATATTCGATTTATCAGCTTT+TGG | - | chr2_1:16235696-16235715 | None:intergenic | 25.0% |
! | AGCATAACCAAAATGAAATA+TGG | + | chr2_1:16235858-16235877 | Msa0197880:CDS | 25.0% |
!!! | ACCTTTTTTCAACACATTTT+CGG | - | chr2_1:16235889-16235908 | None:intergenic | 25.0% |
!! | ATGTGTTGAAAAAAGGTATA+TGG | + | chr2_1:16235892-16235911 | Msa0197880:CDS | 25.0% |
!! | TGTGTTGAAAAAAGGTATAT+GGG | + | chr2_1:16235893-16235912 | Msa0197880:CDS | 25.0% |
!! | TCAAGAAACAAATTTTCTGA+TGG | + | chr2_1:16235918-16235937 | Msa0197880:CDS | 25.0% |
! | TGAAAAAGAAAATGAGATAC+AGG | + | chr2_1:16235944-16235963 | Msa0197880:CDS | 25.0% |
! | AAAAAGAAGTCATCAATTTG+AGG | + | chr2_1:16236075-16236094 | Msa0197880:CDS | 25.0% |
! | TACCTTAATTTCTTCATCTT+TGG | - | chr2_1:16236135-16236154 | None:intergenic | 25.0% |
! | CAAAAAAAGAAGTCAGATAA+CGG | - | chr2_1:16236253-16236272 | None:intergenic | 25.0% |
!!! | CTTTAGTTCTATGTAACAAA+AGG | - | chr2_1:16236340-16236359 | None:intergenic | 25.0% |
! | AGGTTAACTATAGAAGTAAA+AGG | - | chr2_1:16236569-16236588 | None:intergenic | 25.0% |
!! | GTAATTTTATAGCATTGTTC+AGG | - | chr2_1:16236589-16236608 | None:intergenic | 25.0% |
! | AATGCTATAAAATTACTGCA+GGG | + | chr2_1:16236593-16236612 | Msa0197880:intron | 25.0% |
!! | TCAAACCGATTTTATGGAAA+TGG | - | chr2_1:16234818-16234837 | None:intergenic | 30.0% |
! | TGTTATGACTACTTGCATTT+TGG | + | chr2_1:16235213-16235232 | Msa0197880:intron | 30.0% |
! | TTTTGGACTAACTTTTGCAT+AGG | + | chr2_1:16235230-16235249 | Msa0197880:intron | 30.0% |
GGTTTATCTATACAGTAACA+TGG | + | chr2_1:16235268-16235287 | Msa0197880:intron | 30.0% | |
ATGGAAAGATGAAAGTGATA+AGG | + | chr2_1:16235390-16235409 | Msa0197880:CDS | 30.0% | |
AGAAGAAAGAAAGATTATGC+AGG | + | chr2_1:16235435-16235454 | Msa0197880:CDS | 30.0% | |
AAAAGCAGAATCACAATTGA+AGG | + | chr2_1:16235507-16235526 | Msa0197880:CDS | 30.0% | |
!! | ATACGGTATTTATTTTTCGC+AGG | + | chr2_1:16235590-16235609 | Msa0197880:intron | 30.0% |
TTAAGTTTCGTAACGAACAA+TGG | + | chr2_1:16235717-16235736 | Msa0197880:CDS | 30.0% | |
TTCCAAAAGCCAAACATAAA+AGG | + | chr2_1:16235798-16235817 | Msa0197880:CDS | 30.0% | |
! | TCTATGTTGCCTTTTATGTT+TGG | - | chr2_1:16235810-16235829 | None:intergenic | 30.0% |
! | GGTAGAACCATATTTCATTT+TGG | - | chr2_1:16235868-16235887 | None:intergenic | 30.0% |
ACCGAAAATGTGTTGAAAAA+AGG | + | chr2_1:16235885-16235904 | Msa0197880:CDS | 30.0% | |
! | AGAAACAAATTTTCTGATGG+TGG | + | chr2_1:16235921-16235940 | Msa0197880:CDS | 30.0% |
CACCAAAGATGAAGAAATTA+AGG | + | chr2_1:16236130-16236149 | Msa0197880:CDS | 30.0% | |
AGATGAAGAAATTAAGGTAC+TGG | + | chr2_1:16236136-16236155 | Msa0197880:intron | 30.0% | |
TTGTCAATCGTAGAAAATAG+TGG | + | chr2_1:16236182-16236201 | Msa0197880:intron | 30.0% | |
AAGATTTCAACAAATCGCTA+TGG | - | chr2_1:16236296-16236315 | None:intergenic | 30.0% | |
CATCAATAAAATCCGATGAT+AGG | + | chr2_1:16236474-16236493 | Msa0197880:CDS | 30.0% | |
GAAGTTCAAACTTCTCTAAA+AGG | + | chr2_1:16236507-16236526 | Msa0197880:CDS | 30.0% | |
CAATGCTATAAAATTACTGC+AGG | + | chr2_1:16236592-16236611 | Msa0197880:intron | 30.0% | |
CTTTATGAAGAGAAAATTGG+AGG | + | chr2_1:16236638-16236657 | Msa0197880:three_prime_UTR | 30.0% | |
!! | TCAAACCGATTTTATGGAAA+TGG | - | chr2_1:16234818-16234837 | None:intergenic | 30.0% |
! | TGTTATGACTACTTGCATTT+TGG | + | chr2_1:16235213-16235232 | Msa0197880:intron | 30.0% |
! | TTTTGGACTAACTTTTGCAT+AGG | + | chr2_1:16235230-16235249 | Msa0197880:intron | 30.0% |
GGTTTATCTATACAGTAACA+TGG | + | chr2_1:16235268-16235287 | Msa0197880:intron | 30.0% | |
ATGGAAAGATGAAAGTGATA+AGG | + | chr2_1:16235390-16235409 | Msa0197880:CDS | 30.0% | |
AGAAGAAAGAAAGATTATGC+AGG | + | chr2_1:16235435-16235454 | Msa0197880:CDS | 30.0% | |
AAAAGCAGAATCACAATTGA+AGG | + | chr2_1:16235507-16235526 | Msa0197880:CDS | 30.0% | |
!! | ATACGGTATTTATTTTTCGC+AGG | + | chr2_1:16235590-16235609 | Msa0197880:intron | 30.0% |
TTAAGTTTCGTAACGAACAA+TGG | + | chr2_1:16235717-16235736 | Msa0197880:CDS | 30.0% | |
TTCCAAAAGCCAAACATAAA+AGG | + | chr2_1:16235798-16235817 | Msa0197880:CDS | 30.0% | |
! | TCTATGTTGCCTTTTATGTT+TGG | - | chr2_1:16235810-16235829 | None:intergenic | 30.0% |
! | GGTAGAACCATATTTCATTT+TGG | - | chr2_1:16235868-16235887 | None:intergenic | 30.0% |
ACCGAAAATGTGTTGAAAAA+AGG | + | chr2_1:16235885-16235904 | Msa0197880:CDS | 30.0% | |
! | AGAAACAAATTTTCTGATGG+TGG | + | chr2_1:16235921-16235940 | Msa0197880:CDS | 30.0% |
CACCAAAGATGAAGAAATTA+AGG | + | chr2_1:16236130-16236149 | Msa0197880:CDS | 30.0% | |
AGATGAAGAAATTAAGGTAC+TGG | + | chr2_1:16236136-16236155 | Msa0197880:intron | 30.0% | |
TTGTCAATCGTAGAAAATAG+TGG | + | chr2_1:16236182-16236201 | Msa0197880:intron | 30.0% | |
AAGATTTCAACAAATCGCTA+TGG | - | chr2_1:16236296-16236315 | None:intergenic | 30.0% | |
CATCAATAAAATCCGATGAT+AGG | + | chr2_1:16236474-16236493 | Msa0197880:CDS | 30.0% | |
GAAGTTCAAACTTCTCTAAA+AGG | + | chr2_1:16236507-16236526 | Msa0197880:CDS | 30.0% | |
CAATGCTATAAAATTACTGC+AGG | + | chr2_1:16236592-16236611 | Msa0197880:intron | 30.0% | |
CTTTATGAAGAGAAAATTGG+AGG | + | chr2_1:16236638-16236657 | Msa0197880:three_prime_UTR | 30.0% | |
! | TTTTAGATACTTGGGTCTTC+CGG | - | chr2_1:16234758-16234777 | None:intergenic | 35.0% |
ACCCAAGTATCTAAAAGGAA+GGG | + | chr2_1:16234762-16234781 | Msa0197880:intron | 35.0% | |
! | TCCCTTCCTTTTAGATACTT+GGG | - | chr2_1:16234766-16234785 | None:intergenic | 35.0% |
ACACGCCATTTCCATAAAAT+CGG | + | chr2_1:16234810-16234829 | Msa0197880:intron | 35.0% | |
!!! | TTTGCTTCAAGGTTTTGAGT+TGG | - | chr2_1:16234893-16234912 | None:intergenic | 35.0% |
AAATCTTAGAGAAAAGCCAC+CGG | + | chr2_1:16235049-16235068 | Msa0197880:CDS | 35.0% | |
GTAATCACGAATGAGATTAG+CGG | - | chr2_1:16235151-16235170 | None:intergenic | 35.0% | |
! | CATAGGAATTTTGCATCTAC+TGG | + | chr2_1:16235247-16235266 | Msa0197880:intron | 35.0% |
TAAAATTTCAGGAGGAGAAG+AGG | + | chr2_1:16235299-16235318 | Msa0197880:intron | 35.0% | |
!!! | TTTTGCTGTTCTCTCTGATA+TGG | - | chr2_1:16235491-16235510 | None:intergenic | 35.0% |
AGAAGGCTTAAAGCAATTCT+CGG | + | chr2_1:16235644-16235663 | Msa0197880:CDS | 35.0% | |
TGGAGATACTGAAAATGCAT+TGG | - | chr2_1:16235676-16235695 | None:intergenic | 35.0% | |
! | TTGGAACAAAGTGTTTCCAA+CGG | - | chr2_1:16235784-16235803 | None:intergenic | 35.0% |
!!! | TGCCTTTTATGTTTGGCTTT+TGG | - | chr2_1:16235803-16235822 | None:intergenic | 35.0% |
AAAAGGCAACATAGACAGTA+TGG | + | chr2_1:16235815-16235834 | Msa0197880:CDS | 35.0% | |
!!! | TTCATTTTGGTTATGCTACC+CGG | - | chr2_1:16235855-16235874 | None:intergenic | 35.0% |
! | TTTAGAGTCTTCATCAGCAT+TGG | - | chr2_1:16235991-16236010 | None:intergenic | 35.0% |
!! | TGATTTAGAAAGCACTGATG+TGG | + | chr2_1:16236025-16236044 | Msa0197880:CDS | 35.0% |
!! | GAAAGTTGATGCATTGACAA+AGG | + | chr2_1:16236391-16236410 | Msa0197880:CDS | 35.0% |
CAATAAAATCCGATGATAGG+AGG | + | chr2_1:16236477-16236496 | Msa0197880:CDS | 35.0% | |
! | TTTTAGATACTTGGGTCTTC+CGG | - | chr2_1:16234758-16234777 | None:intergenic | 35.0% |
ACCCAAGTATCTAAAAGGAA+GGG | + | chr2_1:16234762-16234781 | Msa0197880:intron | 35.0% | |
! | TCCCTTCCTTTTAGATACTT+GGG | - | chr2_1:16234766-16234785 | None:intergenic | 35.0% |
ACACGCCATTTCCATAAAAT+CGG | + | chr2_1:16234810-16234829 | Msa0197880:intron | 35.0% | |
!!! | TTTGCTTCAAGGTTTTGAGT+TGG | - | chr2_1:16234893-16234912 | None:intergenic | 35.0% |
AAATCTTAGAGAAAAGCCAC+CGG | + | chr2_1:16235049-16235068 | Msa0197880:CDS | 35.0% | |
GTAATCACGAATGAGATTAG+CGG | - | chr2_1:16235151-16235170 | None:intergenic | 35.0% | |
! | CATAGGAATTTTGCATCTAC+TGG | + | chr2_1:16235247-16235266 | Msa0197880:intron | 35.0% |
TAAAATTTCAGGAGGAGAAG+AGG | + | chr2_1:16235299-16235318 | Msa0197880:intron | 35.0% | |
!!! | TTTTGCTGTTCTCTCTGATA+TGG | - | chr2_1:16235491-16235510 | None:intergenic | 35.0% |
AGAAGGCTTAAAGCAATTCT+CGG | + | chr2_1:16235644-16235663 | Msa0197880:CDS | 35.0% | |
TGGAGATACTGAAAATGCAT+TGG | - | chr2_1:16235676-16235695 | None:intergenic | 35.0% | |
! | TTGGAACAAAGTGTTTCCAA+CGG | - | chr2_1:16235784-16235803 | None:intergenic | 35.0% |
!!! | TGCCTTTTATGTTTGGCTTT+TGG | - | chr2_1:16235803-16235822 | None:intergenic | 35.0% |
AAAAGGCAACATAGACAGTA+TGG | + | chr2_1:16235815-16235834 | Msa0197880:CDS | 35.0% | |
!!! | TTCATTTTGGTTATGCTACC+CGG | - | chr2_1:16235855-16235874 | None:intergenic | 35.0% |
! | TTTAGAGTCTTCATCAGCAT+TGG | - | chr2_1:16235991-16236010 | None:intergenic | 35.0% |
!! | TGATTTAGAAAGCACTGATG+TGG | + | chr2_1:16236025-16236044 | Msa0197880:CDS | 35.0% |
!! | GAAAGTTGATGCATTGACAA+AGG | + | chr2_1:16236391-16236410 | Msa0197880:CDS | 35.0% |
CAATAAAATCCGATGATAGG+AGG | + | chr2_1:16236477-16236496 | Msa0197880:CDS | 35.0% | |
GGAAGACCCAAGTATCTAAA+AGG | + | chr2_1:16234757-16234776 | Msa0197880:intron | 40.0% | |
GACCCAAGTATCTAAAAGGA+AGG | + | chr2_1:16234761-16234780 | Msa0197880:intron | 40.0% | |
! | CTCCCTTCCTTTTAGATACT+TGG | - | chr2_1:16234767-16234786 | None:intergenic | 40.0% |
TGCGAAGAGTTGTTTGATTG+TGG | - | chr2_1:16234848-16234867 | None:intergenic | 40.0% | |
!!! | TCAAGGTTTTGAGTTGGCTT+CGG | - | chr2_1:16234887-16234906 | None:intergenic | 40.0% |
! | CAACTTCCACAATCTTTTGC+CGG | - | chr2_1:16235071-16235090 | None:intergenic | 40.0% |
CCTCAAGTTCATGAATCGTT+TGG | - | chr2_1:16235104-16235123 | None:intergenic | 40.0% | |
CCAAACGATTCATGAACTTG+AGG | + | chr2_1:16235101-16235120 | Msa0197880:CDS | 40.0% | |
GAGGAGCTCATCTTATCAAA+TGG | + | chr2_1:16235120-16235139 | Msa0197880:CDS | 40.0% | |
CAGATTTCTGAGTTGCAAGT+AGG | + | chr2_1:16235177-16235196 | Msa0197880:intron | 40.0% | |
ACTAGAGAGGGAATTAGCAA+GGG | + | chr2_1:16235324-16235343 | Msa0197880:CDS | 40.0% | |
CAACAGAATTGCAACTGTTG+CGG | + | chr2_1:16235360-16235379 | Msa0197880:CDS | 40.0% | |
TCTTCTAACCATTGCCTAAC+AGG | - | chr2_1:16235421-16235440 | None:intergenic | 40.0% | |
AGGCTAAAAACGCTTGAAGA+AGG | + | chr2_1:16235627-16235646 | Msa0197880:CDS | 40.0% | |
AGTTTCGTAACGAACAATGG+TGG | + | chr2_1:16235720-16235739 | Msa0197880:CDS | 40.0% | |
!! | ACAATGGTGGATTGAGAAAC+AGG | + | chr2_1:16235733-16235752 | Msa0197880:CDS | 40.0% |
AATGAGATACAGGTGAACAC+AGG | + | chr2_1:16235954-16235973 | Msa0197880:CDS | 40.0% | |
CGATTGACAACTCTGATATG+AGG | - | chr2_1:16236172-16236191 | None:intergenic | 40.0% | |
! | TGATGCATTGACAAAGGCTA+TGG | + | chr2_1:16236397-16236416 | Msa0197880:CDS | 40.0% |
CAAAGGCTATGGAAGTAGAA+TGG | + | chr2_1:16236408-16236427 | Msa0197880:CDS | 40.0% | |
!! | TCTGCTTTTCCTCCTATCAT+CGG | - | chr2_1:16236489-16236508 | None:intergenic | 40.0% |
TCTCAGACTCTGTAAGTTAG+TGG | - | chr2_1:16236744-16236763 | None:intergenic | 40.0% | |
CTTCTCTGTATGTACAGAGT+TGG | - | chr2_1:16236768-16236787 | None:intergenic | 40.0% | |
GGAAGACCCAAGTATCTAAA+AGG | + | chr2_1:16234757-16234776 | Msa0197880:intron | 40.0% | |
GACCCAAGTATCTAAAAGGA+AGG | + | chr2_1:16234761-16234780 | Msa0197880:intron | 40.0% | |
! | CTCCCTTCCTTTTAGATACT+TGG | - | chr2_1:16234767-16234786 | None:intergenic | 40.0% |
TGCGAAGAGTTGTTTGATTG+TGG | - | chr2_1:16234848-16234867 | None:intergenic | 40.0% | |
!!! | TCAAGGTTTTGAGTTGGCTT+CGG | - | chr2_1:16234887-16234906 | None:intergenic | 40.0% |
! | CAACTTCCACAATCTTTTGC+CGG | - | chr2_1:16235071-16235090 | None:intergenic | 40.0% |
CCTCAAGTTCATGAATCGTT+TGG | - | chr2_1:16235104-16235123 | None:intergenic | 40.0% | |
CCAAACGATTCATGAACTTG+AGG | + | chr2_1:16235101-16235120 | Msa0197880:CDS | 40.0% | |
GAGGAGCTCATCTTATCAAA+TGG | + | chr2_1:16235120-16235139 | Msa0197880:CDS | 40.0% | |
CAGATTTCTGAGTTGCAAGT+AGG | + | chr2_1:16235177-16235196 | Msa0197880:intron | 40.0% | |
ACTAGAGAGGGAATTAGCAA+GGG | + | chr2_1:16235324-16235343 | Msa0197880:CDS | 40.0% | |
CAACAGAATTGCAACTGTTG+CGG | + | chr2_1:16235360-16235379 | Msa0197880:CDS | 40.0% | |
TCTTCTAACCATTGCCTAAC+AGG | - | chr2_1:16235421-16235440 | None:intergenic | 40.0% | |
AGGCTAAAAACGCTTGAAGA+AGG | + | chr2_1:16235627-16235646 | Msa0197880:CDS | 40.0% | |
AGTTTCGTAACGAACAATGG+TGG | + | chr2_1:16235720-16235739 | Msa0197880:CDS | 40.0% | |
!! | ACAATGGTGGATTGAGAAAC+AGG | + | chr2_1:16235733-16235752 | Msa0197880:CDS | 40.0% |
AATGAGATACAGGTGAACAC+AGG | + | chr2_1:16235954-16235973 | Msa0197880:CDS | 40.0% | |
CGATTGACAACTCTGATATG+AGG | - | chr2_1:16236172-16236191 | None:intergenic | 40.0% | |
! | TGATGCATTGACAAAGGCTA+TGG | + | chr2_1:16236397-16236416 | Msa0197880:CDS | 40.0% |
CAAAGGCTATGGAAGTAGAA+TGG | + | chr2_1:16236408-16236427 | Msa0197880:CDS | 40.0% | |
!! | TCTGCTTTTCCTCCTATCAT+CGG | - | chr2_1:16236489-16236508 | None:intergenic | 40.0% |
TCTCAGACTCTGTAAGTTAG+TGG | - | chr2_1:16236744-16236763 | None:intergenic | 40.0% | |
CTTCTCTGTATGTACAGAGT+TGG | - | chr2_1:16236768-16236787 | None:intergenic | 40.0% | |
AGCTTCCTACATTGTTCGCA+AGG | - | chr2_1:16234790-16234809 | None:intergenic | 45.0% | |
!!! | AAGGTTTTGAGTTGGCTTCG+GGG | - | chr2_1:16234885-16234904 | None:intergenic | 45.0% |
!!! | CAAGGTTTTGAGTTGGCTTC+GGG | - | chr2_1:16234886-16234905 | None:intergenic | 45.0% |
ACTCGCAAAGCTTTGCTTCA+AGG | - | chr2_1:16234904-16234923 | None:intergenic | 45.0% | |
ATCACGAATGAGATTAGCGG+TGG | - | chr2_1:16235148-16235167 | None:intergenic | 45.0% | |
CACTAGAGAGGGAATTAGCA+AGG | + | chr2_1:16235323-16235342 | Msa0197880:CDS | 45.0% | |
CGCAACAGTTGCAATTCTGT+TGG | - | chr2_1:16235362-16235381 | None:intergenic | 45.0% | |
CAACTGTTGCGGCTAATGAA+TGG | + | chr2_1:16235371-16235390 | Msa0197880:CDS | 45.0% | |
GTGATAAGGTCATGCCTGTT+AGG | + | chr2_1:16235404-16235423 | Msa0197880:CDS | 45.0% | |
TTATGCAGGCAGAGATGCAA+AGG | + | chr2_1:16235449-16235468 | Msa0197880:CDS | 45.0% | |
AGGTCTACATCACAACCAAG+AGG | + | chr2_1:16235753-16235772 | Msa0197880:CDS | 45.0% | |
TTTCCAACGGTAGATCCTCT+TGG | - | chr2_1:16235771-16235790 | None:intergenic | 45.0% | |
GCAACATAGACAGTATGGCT+GGG | + | chr2_1:16235820-16235839 | Msa0197880:CDS | 45.0% | |
! | TGGTTATGCTACCCGGTTTT+CGG | - | chr2_1:16235848-16235867 | None:intergenic | 45.0% |
AGCTTCCTACATTGTTCGCA+AGG | - | chr2_1:16234790-16234809 | None:intergenic | 45.0% | |
!!! | AAGGTTTTGAGTTGGCTTCG+GGG | - | chr2_1:16234885-16234904 | None:intergenic | 45.0% |
!!! | CAAGGTTTTGAGTTGGCTTC+GGG | - | chr2_1:16234886-16234905 | None:intergenic | 45.0% |
ACTCGCAAAGCTTTGCTTCA+AGG | - | chr2_1:16234904-16234923 | None:intergenic | 45.0% | |
ATCACGAATGAGATTAGCGG+TGG | - | chr2_1:16235148-16235167 | None:intergenic | 45.0% | |
CACTAGAGAGGGAATTAGCA+AGG | + | chr2_1:16235323-16235342 | Msa0197880:CDS | 45.0% | |
CGCAACAGTTGCAATTCTGT+TGG | - | chr2_1:16235362-16235381 | None:intergenic | 45.0% | |
CAACTGTTGCGGCTAATGAA+TGG | + | chr2_1:16235371-16235390 | Msa0197880:CDS | 45.0% | |
GTGATAAGGTCATGCCTGTT+AGG | + | chr2_1:16235404-16235423 | Msa0197880:CDS | 45.0% | |
TTATGCAGGCAGAGATGCAA+AGG | + | chr2_1:16235449-16235468 | Msa0197880:CDS | 45.0% | |
AGGTCTACATCACAACCAAG+AGG | + | chr2_1:16235753-16235772 | Msa0197880:CDS | 45.0% | |
TTTCCAACGGTAGATCCTCT+TGG | - | chr2_1:16235771-16235790 | None:intergenic | 45.0% | |
GCAACATAGACAGTATGGCT+GGG | + | chr2_1:16235820-16235839 | Msa0197880:CDS | 45.0% | |
! | TGGTTATGCTACCCGGTTTT+CGG | - | chr2_1:16235848-16235867 | None:intergenic | 45.0% |
!!! | TAGTAATAAATAATTTTATA+CGG | + | chr2_1:16235573-16235592 | Msa0197880:intron | 5.0% |
!!! | TAGTAATAAATAATTTTATA+CGG | + | chr2_1:16235573-16235592 | Msa0197880:intron | 5.0% |
AGATACTTGGGTCTTCCGGT+TGG | - | chr2_1:16234754-16234773 | None:intergenic | 50.0% | |
AAGCCACCGGCAAAAGATTG+TGG | + | chr2_1:16235062-16235081 | Msa0197880:CDS | 50.0% | |
! | CTTCCACAATCTTTTGCCGG+TGG | - | chr2_1:16235068-16235087 | None:intergenic | 50.0% |
AGGAGAAGAGGACACTAGAG+AGG | + | chr2_1:16235311-16235330 | Msa0197880:CDS | 50.0% | |
GGAGAAGAGGACACTAGAGA+GGG | + | chr2_1:16235312-16235331 | Msa0197880:CDS | 50.0% | |
AGGTCATGCCTGTTAGGCAA+TGG | + | chr2_1:16235410-16235429 | Msa0197880:CDS | 50.0% | |
CGCAGGATAAACTGAAGCTG+AGG | + | chr2_1:16235607-16235626 | Msa0197880:intron | 50.0% | |
CAACCAAGAGGATCTACCGT+TGG | + | chr2_1:16235765-16235784 | Msa0197880:CDS | 50.0% | |
GGCAACATAGACAGTATGGC+TGG | + | chr2_1:16235819-16235838 | Msa0197880:CDS | 50.0% | |
TATGGCTGGGAACCGAAAAC+CGG | + | chr2_1:16235833-16235852 | Msa0197880:CDS | 50.0% | |
!! | GAAAGCACTGATGTGGTCTC+TGG | + | chr2_1:16236032-16236051 | Msa0197880:CDS | 50.0% |
AGATACTTGGGTCTTCCGGT+TGG | - | chr2_1:16234754-16234773 | None:intergenic | 50.0% | |
AAGCCACCGGCAAAAGATTG+TGG | + | chr2_1:16235062-16235081 | Msa0197880:CDS | 50.0% | |
! | CTTCCACAATCTTTTGCCGG+TGG | - | chr2_1:16235068-16235087 | None:intergenic | 50.0% |
AGGAGAAGAGGACACTAGAG+AGG | + | chr2_1:16235311-16235330 | Msa0197880:CDS | 50.0% | |
GGAGAAGAGGACACTAGAGA+GGG | + | chr2_1:16235312-16235331 | Msa0197880:CDS | 50.0% | |
AGGTCATGCCTGTTAGGCAA+TGG | + | chr2_1:16235410-16235429 | Msa0197880:CDS | 50.0% | |
CGCAGGATAAACTGAAGCTG+AGG | + | chr2_1:16235607-16235626 | Msa0197880:intron | 50.0% | |
CAACCAAGAGGATCTACCGT+TGG | + | chr2_1:16235765-16235784 | Msa0197880:CDS | 50.0% | |
GGCAACATAGACAGTATGGC+TGG | + | chr2_1:16235819-16235838 | Msa0197880:CDS | 50.0% | |
TATGGCTGGGAACCGAAAAC+CGG | + | chr2_1:16235833-16235852 | Msa0197880:CDS | 50.0% | |
!! | GAAAGCACTGATGTGGTCTC+TGG | + | chr2_1:16236032-16236051 | Msa0197880:CDS | 50.0% |
GGGAGCCTTGCGAACAATGT+AGG | + | chr2_1:16234782-16234801 | Msa0197880:intron | 55.0% | |
ATGGCTGGGAACCGAAAACC+GGG | + | chr2_1:16235834-16235853 | Msa0197880:CDS | 55.0% | |
GGGAGCCTTGCGAACAATGT+AGG | + | chr2_1:16234782-16234801 | Msa0197880:intron | 55.0% | |
ATGGCTGGGAACCGAAAACC+GGG | + | chr2_1:16235834-16235853 | Msa0197880:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 16234741 | 16236837 | 16234741 | ID=Msa0197880;Name=Msa0197880 |
chr2_1 | mRNA | 16234741 | 16236837 | 16234741 | ID=Msa0197880-mRNA-1;Parent=Msa0197880;Name=Msa0197880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.8|0.83|0.83|1|1|6|205|369 |
chr2_1 | exon | 16234741 | 16234767 | 16234741 | ID=Msa0197880-mRNA-1:exon:6745;Parent=Msa0197880-mRNA-1 |
chr2_1 | exon | 16235039 | 16235194 | 16235039 | ID=Msa0197880-mRNA-1:exon:6746;Parent=Msa0197880-mRNA-1 |
chr2_1 | exon | 16235310 | 16235528 | 16235310 | ID=Msa0197880-mRNA-1:exon:6747;Parent=Msa0197880-mRNA-1 |
chr2_1 | exon | 16235612 | 16236151 | 16235612 | ID=Msa0197880-mRNA-1:exon:6748;Parent=Msa0197880-mRNA-1 |
chr2_1 | exon | 16236380 | 16236528 | 16236380 | ID=Msa0197880-mRNA-1:exon:6749;Parent=Msa0197880-mRNA-1 |
chr2_1 | exon | 16236614 | 16236837 | 16236614 | ID=Msa0197880-mRNA-1:exon:6750;Parent=Msa0197880-mRNA-1 |
chr2_1 | CDS | 16234741 | 16234767 | 16234741 | ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1 |
chr2_1 | CDS | 16235039 | 16235194 | 16235039 | ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1 |
chr2_1 | CDS | 16235310 | 16235528 | 16235310 | ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1 |
chr2_1 | CDS | 16235612 | 16236151 | 16235612 | ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1 |
chr2_1 | CDS | 16236380 | 16236528 | 16236380 | ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1 |
chr2_1 | CDS | 16236614 | 16236632 | 16236614 | ID=Msa0197880-mRNA-1:cds;Parent=Msa0197880-mRNA-1 |
chr2_1 | three_prime_UTR | 16236633 | 16236837 | 16236633 | ID=Msa0197880-mRNA-1:three_prime_utr;Parent=Msa0197880-mRNA-1 |
Gene Sequence |
Protein sequence |