AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054810 MtrunA17_Chr1g0149991 96.390 554 20 0 1 554 1 554 0.0 1117
Msa0054810 MtrunA17_Chr4g0064671 63.454 249 73 4 300 533 9 254 1.21e-105 317
Msa0054810 MtrunA17_Chr4g0064681 40.785 331 127 8 13 286 12 330 5.26e-69 226
Msa0054810 MtrunA17_Chr4g0074041 31.609 348 188 11 182 524 93 395 1.38e-42 163
Msa0054810 MtrunA17_Chr5g0411271 30.295 373 208 10 155 525 128 450 1.19e-40 156
Msa0054810 MtrunA17_Chr6g0458421 31.519 349 184 12 182 525 30 328 2.36e-39 151
Msa0054810 MtrunA17_Chr6g0458441 31.461 356 187 13 177 525 121 426 5.64e-39 151
Msa0054810 MtrunA17_Chr6g0458431 31.232 349 185 12 182 525 95 393 2.05e-36 144
Msa0054810 MtrunA17_Chr3g0133061 27.841 352 197 12 182 524 585 888 5.46e-36 144
Msa0054810 MtrunA17_Chr5g0412381 28.409 352 197 11 182 526 425 728 1.69e-33 136
Msa0054810 MtrunA17_Chr5g0427301 27.273 352 198 10 182 524 543 845 3.19e-33 135
Msa0054810 MtrunA17_Chr3g0123951 28.726 369 189 12 176 514 16 340 3.43e-32 127
Msa0054810 MtrunA17_Chr8g0382161 28.418 373 185 14 176 514 16 340 5.85e-32 126
Msa0054810 MtrunA17_Chr8g0366721 28.653 349 182 13 182 525 213 499 2.55e-31 128
Msa0054810 MtrunA17_Chr1g0150541 28.080 349 197 12 182 522 182 484 2.21e-30 126
Msa0054810 MtrunA17_Chr2g0313171 27.841 352 204 10 181 526 464 771 1.25e-29 124
Msa0054810 MtrunA17_Chr2g0312901 26.879 346 206 10 182 522 23 326 2.77e-27 116
Msa0054810 MtrunA17_Chr8g0365831 26.260 377 205 16 182 540 165 486 5.91e-23 102
Msa0054810 MtrunA17_Chr4g0062561 23.276 348 203 10 182 525 254 541 1.36e-21 99.4
Msa0054810 MtrunA17_Chr4g0062561 22.319 345 205 12 191 525 562 853 5.22e-15 78.6
Msa0054810 MtrunA17_Chr1g0189101 31.034 174 98 4 352 522 754 908 2.59e-20 95.1
Msa0054810 MtrunA17_Chr1g0189101 27.128 188 117 2 179 346 318 505 3.04e-14 75.9
Msa0054810 MtrunA17_Chr3g0121291 27.526 287 181 7 65 337 109 382 2.15e-19 92.4
Msa0054810 MtrunA17_Chr3g0121291 28.082 146 73 4 392 522 939 1067 1.68e-11 67.4
Msa0054810 MtrunA17_Chr7g0255591 30.061 163 93 4 363 522 754 898 2.23e-19 92.4
Msa0054810 MtrunA17_Chr3g0119031 23.529 340 210 9 179 516 197 488 2.21e-18 89.4
Msa0054810 MtrunA17_Chr4g0062491 23.343 347 200 12 192 525 1 294 2.26e-18 86.3
Msa0054810 MtrunA17_Chr5g0439971 23.547 344 205 9 179 516 202 493 7.32e-18 87.8
Msa0054810 MtrunA17_Chr1g0170261 24.625 333 199 11 179 508 199 482 1.00e-17 87.4
Msa0054810 MtrunA17_Chr2g0322211 26.543 162 98 4 363 522 717 859 8.82e-17 84.0
Msa0054810 MtrunA17_Chr2g0322211 29.412 187 100 6 179 339 269 449 2.23e-13 73.2
Msa0054810 MtrunA17_Chr7g0267641 29.012 162 95 4 363 522 791 934 1.23e-16 83.6
Msa0054810 MtrunA17_Chr1g0148321 23.343 347 200 11 182 516 108 400 3.33e-13 72.8
Msa0054810 MtrunA17_Chr3g0138791 24.425 348 194 10 169 507 98 385 5.90e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054810 AT5G10790.1 55.292 548 228 5 2 537 1 543 0.0 582
Msa0054810 AT5G10790.2 58.454 414 156 4 135 537 6 414 2.66e-159 461
Msa0054810 AT5G57990.1 31.503 346 190 8 182 524 108 409 3.00e-42 162
Msa0054810 AT4G17895.1 30.328 366 199 11 163 525 164 476 1.91e-37 147
Msa0054810 AT2G24640.2 30.086 349 190 12 182 522 5 307 3.93e-35 138
Msa0054810 AT2G24640.1 30.086 349 190 12 182 522 175 477 1.46e-34 139
Msa0054810 AT4G24560.1 26.724 348 206 8 182 524 543 846 9.04e-34 137
Msa0054810 AT2G22310.1 27.642 369 192 12 176 514 16 339 5.66e-32 127
Msa0054810 AT4G31670.1 27.874 348 199 11 182 522 169 471 1.12e-31 130
Msa0054810 AT4G39910.1 28.533 375 186 15 176 514 16 344 5.12e-31 124
Msa0054810 AT5G65450.2 26.989 352 203 10 182 526 349 653 9.93e-31 127
Msa0054810 AT5G65450.1 26.989 352 203 10 182 526 330 634 1.11e-30 127
Msa0054810 AT3G14400.1 26.705 352 203 9 182 522 25 332 2.88e-29 122
Msa0054810 AT1G17110.3 29.379 354 192 14 181 524 438 743 2.93e-29 123
Msa0054810 AT1G17110.1 29.379 354 192 14 181 524 438 743 2.93e-29 123
Msa0054810 AT1G17110.2 29.379 354 192 14 181 524 442 747 3.53e-29 123
Msa0054810 AT5G46740.1 28.611 360 198 12 177 525 158 469 1.40e-27 118
Msa0054810 AT5G46740.2 29.730 259 142 6 269 525 40 260 1.10e-24 108
Msa0054810 AT2G22310.3 25.788 349 186 11 194 514 4 307 1.22e-24 105
Msa0054810 AT2G22310.2 25.217 345 185 11 198 514 3 302 9.94e-23 99.8
Msa0054810 AT2G40930.1 29.379 177 104 4 353 526 759 917 6.89e-21 97.4
Msa0054810 AT2G40930.1 26.882 186 116 2 179 344 315 500 1.07e-13 74.7
Msa0054810 AT2G40930.2 29.379 177 104 4 353 526 759 917 6.89e-21 97.4
Msa0054810 AT2G40930.2 26.882 186 116 2 179 344 315 500 1.07e-13 74.7
Msa0054810 AT3G11910.3 26.866 335 189 12 179 508 196 479 5.34e-20 94.7
Msa0054810 AT3G11910.1 26.866 335 189 12 179 508 196 479 5.34e-20 94.7
Msa0054810 AT3G11910.4 26.866 335 189 12 179 508 195 478 5.67e-20 94.7
Msa0054810 AT3G11910.2 26.866 335 189 12 179 508 195 478 5.67e-20 94.7
Msa0054810 AT5G22030.1 28.729 181 107 5 344 522 706 866 1.40e-19 93.2
Msa0054810 AT5G22030.2 28.729 181 107 5 344 522 748 908 1.58e-19 93.2
Msa0054810 AT4G10570.1 31.034 174 98 4 352 522 738 892 2.58e-19 92.4
Msa0054810 AT4G10570.1 30.055 183 104 4 179 339 302 482 5.64e-15 79.0
Msa0054810 AT5G06600.3 26.866 335 189 12 179 508 197 480 3.24e-19 92.4
Msa0054810 AT5G06600.2 26.866 335 189 12 179 508 196 479 3.25e-19 92.4
Msa0054810 AT5G06600.1 26.866 335 189 12 179 508 197 480 3.42e-19 92.4
Msa0054810 AT4G10590.4 31.034 174 98 5 352 522 737 891 4.76e-19 91.7
Msa0054810 AT4G10590.4 30.601 183 103 4 179 339 301 481 1.67e-15 80.5
Msa0054810 AT4G10590.3 31.034 174 98 5 352 522 737 891 4.76e-19 91.7
Msa0054810 AT4G10590.3 30.601 183 103 4 179 339 301 481 1.67e-15 80.5
Msa0054810 AT4G10590.1 31.034 174 98 5 352 522 737 891 4.76e-19 91.7
Msa0054810 AT4G10590.1 30.601 183 103 4 179 339 301 481 1.67e-15 80.5
Msa0054810 AT4G10590.2 31.034 174 98 5 352 522 737 891 4.76e-19 91.7
Msa0054810 AT4G10590.2 30.601 183 103 4 179 339 301 481 1.67e-15 80.5
Msa0054810 AT1G32850.1 31.492 181 104 2 179 339 299 479 2.21e-17 86.3
Msa0054810 AT1G32850.1 31.288 163 90 4 363 522 734 877 2.21e-17 86.3
Msa0054810 AT1G04860.1 27.152 302 165 13 65 337 108 383 6.11e-16 82.0
Msa0054810 AT1G04860.1 28.169 142 76 4 391 522 829 954 1.71e-11 67.8
Msa0054810 AT3G49600.2 24.058 345 202 11 167 507 95 383 3.32e-14 76.6
Msa0054810 AT3G49600.1 24.058 345 202 11 167 507 95 383 3.32e-14 76.6
Msa0054810 AT3G49600.3 24.058 345 202 11 167 507 95 383 3.32e-14 76.3
Msa0054810 AT2G32780.1 29.032 186 113 5 179 355 200 375 3.52e-14 76.3

Find 139 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCTCTTCCAGGTGAATT+TGG 0.110559 1_2:+9502860 None:intergenic
TGCTACATGCACCTCCTTTC+AGG 0.148680 1_2:-9505061 Msa0054810:CDS
AAGACAATAACATCACTTTA+AGG 0.204145 1_2:-9505744 Msa0054810:five_prime_UTR
TTTGAGGGGCTTGAACAATT+TGG 0.213971 1_2:-9505120 Msa0054810:CDS
CATCTGGGTATTCTTAAATT+AGG 0.221042 1_2:+9505509 None:intergenic
TCTGCCTCTCCTTACAATTT+TGG 0.229502 1_2:+9503320 None:intergenic
TCTCGCTGAGCATTGGCTTC+AGG 0.232342 1_2:+9502764 None:intergenic
TCTTTGAAACATCATAAATA+TGG 0.249991 1_2:+9505664 None:intergenic
GAAATTTGTTCATTGATAAT+AGG 0.250395 1_2:-9502095 Msa0054810:three_prime_UTR
AATATGTCTTTGACCGAAAA+AGG 0.251135 1_2:-9503451 Msa0054810:CDS
TTGCATATTCAAACTGAAAA+TGG 0.254382 1_2:-9505407 Msa0054810:CDS
AAGAGAAGAAGATTGGTTTC+TGG 0.256816 1_2:-9505224 Msa0054810:CDS
ATGTTACCTTTGTACGATTA+AGG 0.267506 1_2:-9503018 Msa0054810:CDS
GGTTCAAGGTTTGTGTATAA+AGG 0.290867 1_2:+9505638 None:intergenic
TTGTTCTTCATTCTGTTGTT+TGG 0.304159 1_2:-9505441 Msa0054810:CDS
TTCGCAGTGGTGACACATTC+GGG 0.306608 1_2:-9503061 Msa0054810:CDS
TGAAAGGACAGAAAGAAATA+AGG 0.329839 1_2:+9505807 None:intergenic
GTTGATTAAGAGAAGAAGAT+TGG 0.340148 1_2:-9505231 Msa0054810:CDS
ATATTATGGATCTAACTTAA+AGG 0.345371 1_2:-9502190 Msa0054810:three_prime_UTR
GTCGACACTTCTCGGTTGTT+TGG 0.347793 1_2:-9503392 Msa0054810:CDS
CTTGAGTGGTGGACATAGTT+TGG 0.348528 1_2:-9505030 Msa0054810:CDS
AGAGAAGAAGATTGGTTTCT+GGG 0.361384 1_2:-9505223 Msa0054810:CDS
TTTGATTCTCTCGCTTGGCT+TGG 0.361889 1_2:-9502729 Msa0054810:three_prime_UTR
AGAAGATTGGTTTCTGGGGT+TGG 0.362721 1_2:-9505218 Msa0054810:CDS
AGGATAGAAGAGGACAAATA+TGG 0.364612 1_2:+9503157 None:intergenic
GTTCAAGGTTTGTGTATAAA+GGG 0.364776 1_2:+9505639 None:intergenic
TTGTTATGCCCTCTTTCTCA+TGG 0.367539 1_2:+9504241 None:intergenic
CTCTCTTTGATTCTCTCGCT+TGG 0.369187 1_2:-9502734 Msa0054810:three_prime_UTR
ATAACAAATTGATCAAAATC+AGG 0.369931 1_2:+9505314 None:intergenic
GACAACATGTCGACACTTCT+CGG 0.371942 1_2:-9503400 Msa0054810:CDS
AGCGGATGTGAGGAATATTA+TGG 0.372153 1_2:-9502204 Msa0054810:three_prime_UTR
TGATCTGACCCTAGCTTCTC+TGG 0.378085 1_2:+9503355 None:intergenic
CTCGCTGAGCATTGGCTTCA+GGG 0.380181 1_2:+9502765 None:intergenic
GAGAAACTGAGCAGGACTAT+AGG 0.381482 1_2:+9504917 None:intergenic
TTGATTCTCTCGCTTGGCTT+GGG 0.382650 1_2:-9502728 Msa0054810:three_prime_UTR
AAGCTTAAACATGGTTTCAA+TGG 0.389081 1_2:-9505593 Msa0054810:CDS
TTGAGGGGCTTGAACAATTT+GGG 0.395064 1_2:-9505119 Msa0054810:CDS
TTTCGCAGTGGTGACACATT+CGG 0.395524 1_2:-9503062 Msa0054810:CDS
GGAATCAAAATCTCTCTTCC+AGG 0.396368 1_2:+9502851 None:intergenic
TGTTATGGCTAAACATTCAA+TGG 0.397902 1_2:-9505297 Msa0054810:CDS
TTCAAACTAGTTCTACCAAT+TGG 0.399675 1_2:+9505536 None:intergenic
TTTCAGTTTGAATATGCAAA+AGG 0.405481 1_2:+9505411 None:intergenic
TCTATCCTCAGAGCCAGATA+TGG 0.416371 1_2:-9503142 Msa0054810:CDS
CCTACAATTTCCATTCTCCT+TGG 0.416960 1_2:-9503188 Msa0054810:CDS
GTCTATTAGTAAACTCCCTT+TGG 0.419815 1_2:-9503281 Msa0054810:CDS
ATGTCAACTGCAGTTTGAAA+TGG 0.435313 1_2:-9502578 Msa0054810:three_prime_UTR
AAAGATGGTTGCATGGTTCA+AGG 0.440062 1_2:+9505624 None:intergenic
GCTACATGCACCTCCTTTCA+GGG 0.440111 1_2:-9505060 Msa0054810:CDS
CTACTTGTAACTTCTCCAAT+TGG 0.440841 1_2:-9505551 Msa0054810:CDS
GTTGTCATTCGCATTCTGTT+TGG 0.441060 1_2:+9503417 None:intergenic
CACTGCGAAAATCTCGAACT+TGG 0.453132 1_2:+9503075 None:intergenic
CATTCGGGGACGCTCGAGTC+TGG 0.453948 1_2:-9503046 Msa0054810:CDS
AAAATTACTGTTGTTGCTGT+TGG 0.454482 1_2:-9502155 Msa0054810:three_prime_UTR
AGAAACTGAGCAGGACTATA+GGG 0.457525 1_2:+9504918 None:intergenic
TTGGCTTCAGGGGATCTCTT+CGG 0.460335 1_2:+9502776 None:intergenic
ACTTTACTGCCAAAATTGTA+AGG 0.465863 1_2:-9503329 Msa0054810:CDS
GCTTTGCCACAAGGTGTTGT+TGG 0.475320 1_2:-9505275 Msa0054810:CDS
CCAAGGAGAATGGAAATTGT+AGG 0.477155 1_2:+9503188 None:intergenic
ATGGATCTAACTTAAAGGTA+TGG 0.480502 1_2:-9502185 Msa0054810:three_prime_UTR
AAAGAGGGCATAACAAAGAA+TGG 0.481832 1_2:-9504234 Msa0054810:CDS
ATTGCTCATAGAGTGTTCTA+TGG 0.483644 1_2:-9503565 Msa0054810:CDS
GAGATCAGATGTTACCTGTA+TGG 0.484250 1_2:-9503536 Msa0054810:CDS
GTCCTGCTCAGTTTCTCTAC+AGG 0.484736 1_2:-9504911 Msa0054810:intron
CTCTAGCAACAACCAGTGAT+AGG 0.485936 1_2:+9502830 None:intergenic
TTCAGTTTGAATATGCAAAA+GGG 0.489409 1_2:+9505412 None:intergenic
TTGTAATGGTTGTGAAAAGA+GGG 0.493254 1_2:-9505480 Msa0054810:CDS
AGGGTTCTCTCGCTGAGCAT+TGG 0.493612 1_2:+9502757 None:intergenic
GGAGTCATGTCCAAGGAGAA+TGG 0.498399 1_2:+9503178 None:intergenic
TTTGTAATGGTTGTGAAAAG+AGG 0.503346 1_2:-9505481 Msa0054810:CDS
ATCGTACAAAGGTAACATAA+TGG 0.506468 1_2:+9503023 None:intergenic
ATTTGTTTGTTGATGTAGAA+AGG 0.508294 1_2:-9505379 Msa0054810:CDS
GGTGAATCCACAGGCCATAC+AGG 0.508604 1_2:+9503522 None:intergenic
TTCAGGGACTATTTCTTGAG+TGG 0.511956 1_2:-9505044 Msa0054810:CDS
GGGACAAGAAAGGGGTTATG+TGG 0.512563 1_2:-9502373 Msa0054810:three_prime_UTR
CTCTTCCAGGTGAATTTGGA+AGG 0.512613 1_2:+9502864 None:intergenic
AAACTGCGACAAGGTGGATG+TGG 0.512625 1_2:-9502651 Msa0054810:three_prime_UTR
TAAGCTTGTAATCTGAAAGA+TGG 0.518518 1_2:+9505609 None:intergenic
CAAGAAAGGGGTTATGTGGA+TGG 0.525419 1_2:-9502369 Msa0054810:three_prime_UTR
AGGGACTATTTCTTGAGTGG+TGG 0.532323 1_2:-9505041 Msa0054810:CDS
AGCCACCTTCCAAATTCACC+TGG 0.535835 1_2:-9502869 Msa0054810:CDS
AAATGCAATCCATGAGAAAG+AGG 0.536619 1_2:-9504250 Msa0054810:CDS
ATCACTGGTTGTTGCTAGAG+AGG 0.539762 1_2:-9502827 Msa0054810:exon
ATTTGAAACCAAAGATCTGA+GGG 0.540845 1_2:-9505165 Msa0054810:CDS
TTCAAGCCCCTCAAACCCTC+AGG 0.543880 1_2:+9505128 None:intergenic
CATTCAATGGCTTTGCCACA+AGG 0.546048 1_2:-9505284 Msa0054810:CDS
GGTATCGATGTGATGATGCT+TGG 0.547638 1_2:-9502988 Msa0054810:CDS
ACATGCAAAGTAAGTACCAA+AGG 0.550016 1_2:+9503265 None:intergenic
GTTGTTGGAAATGAGAGTAT+TGG 0.550066 1_2:-9505260 Msa0054810:CDS
TTCACTCGGCCAGAGAAGCT+AGG 0.553007 1_2:-9503364 Msa0054810:CDS
ACATGTTTGTTCATTTAAAG+CGG 0.556246 1_2:-9502222 Msa0054810:three_prime_UTR
CATGCAAAGTAAGTACCAAA+GGG 0.564699 1_2:+9503266 None:intergenic
TTTAGCGAGTTACGAACAGC+AGG 0.566363 1_2:-9504301 Msa0054810:CDS
GATTTGAAACCAAAGATCTG+AGG 0.570185 1_2:-9505166 Msa0054810:CDS
TAACAAATTGATCAAAATCA+GGG 0.572588 1_2:+9505315 None:intergenic
TGATGATGCTTGGATAACTA+AGG 0.578120 1_2:-9502978 Msa0054810:CDS
TTCCAGGTGAATTTGGAAGG+TGG 0.580401 1_2:+9502867 None:intergenic
GAGAAGAAGATTGGTTTCTG+GGG 0.580821 1_2:-9505222 Msa0054810:CDS
TCGCTGAGCATTGGCTTCAG+GGG 0.584903 1_2:+9502766 None:intergenic
GAAATGAGAGTATTGGTCAG+AGG 0.586206 1_2:-9505253 Msa0054810:CDS
TTGCTTTATACAGGCAATGG+TGG 0.587297 1_2:-9503601 Msa0054810:intron
GTTGTTTGGATATGTTCACT+CGG 0.588638 1_2:-9503378 Msa0054810:CDS
AGCGAGAGAATCAAAGAGAG+AGG 0.589970 1_2:+9502737 None:intergenic
GGTTGTTGAGGTGAATCCAC+AGG 0.590106 1_2:+9503513 None:intergenic
CTCAAGAAATAGTCCCTGAA+AGG 0.590650 1_2:+9505047 None:intergenic
AAAAGGGTCATAGGTTGTTG+AGG 0.592906 1_2:+9503501 None:intergenic
AAGAAATAGTCCCTGAAAGG+AGG 0.599106 1_2:+9505050 None:intergenic
TCACTCGGCCAGAGAAGCTA+GGG 0.599161 1_2:-9503363 Msa0054810:CDS
ATAACAAAGAATGGAAGCAA+AGG 0.600079 1_2:-9504225 Msa0054810:intron
AGAAAACAAGAACAATTGAA+AGG 0.600444 1_2:+9505791 None:intergenic
TCAAAGACATATTGATATCG+AGG 0.610837 1_2:+9503461 None:intergenic
ACTGCCAAAATTGTAAGGAG+AGG 0.611806 1_2:-9503324 Msa0054810:CDS
GCGAGAGAATCAAAGAGAGA+GGG 0.616142 1_2:+9502738 None:intergenic
GACCTGTAGAGAAACTGAGC+AGG 0.616659 1_2:+9504909 None:intergenic
AGAATGGAAATTGTAGGTAG+CGG 0.617708 1_2:+9503194 None:intergenic
TTGTACGATTAAGGAAGCAA+TGG 0.620580 1_2:-9503009 Msa0054810:CDS
GTTCATTTAAAGCGGATGTG+AGG 0.621786 1_2:-9502214 Msa0054810:three_prime_UTR
TCAGATTACAAGCTTAAACA+TGG 0.627941 1_2:-9505602 Msa0054810:CDS
AATGCAATCCATGAGAAAGA+GGG 0.630884 1_2:-9504249 Msa0054810:CDS
TTGCTTCCTTAATCGTACAA+AGG 0.633418 1_2:+9503012 None:intergenic
AAAATCAAGGGACAAGAAAG+GGG 0.635164 1_2:-9502381 Msa0054810:three_prime_UTR
CAAATATGGAGTCATGTCCA+AGG 0.638093 1_2:+9503171 None:intergenic
TAATCTGAAAGATGGTTGCA+TGG 0.641786 1_2:+9505617 None:intergenic
ACTATAGGGATTTCGATCAC+CGG 0.642388 1_2:+9504932 None:intergenic
AAAGGTGTGAACTTTACTGT+GGG 0.645548 1_2:-9505361 Msa0054810:CDS
TCTGGCTCTGAGGATAGAAG+AGG 0.653047 1_2:+9503147 None:intergenic
GATAAATTCAAACTGCGACA+AGG 0.653838 1_2:-9502660 Msa0054810:three_prime_UTR
TGGTGCATAACAAACAAACA+AGG 0.655573 1_2:-9502257 Msa0054810:three_prime_UTR
AAGAGTCATGAATAATACAA+AGG 0.655661 1_2:+9502321 None:intergenic
TCATTTCCAACAACACCTTG+TGG 0.658386 1_2:+9505269 None:intergenic
GATGTTACCTGTATGGCCTG+TGG 0.674479 1_2:-9503529 Msa0054810:CDS
AAATTCAAACTGCGACAAGG+TGG 0.674603 1_2:-9502657 Msa0054810:three_prime_UTR
GGTGCATAACAAACAAACAA+GGG 0.677067 1_2:-9502256 Msa0054810:three_prime_UTR
GATTTCCATATCTGGCTCTG+AGG 0.687573 1_2:+9503137 None:intergenic
TCGCAGTGGTGACACATTCG+GGG 0.693018 1_2:-9503060 Msa0054810:CDS
TTGGATAACTAAGGTCGATG+AGG 0.697376 1_2:-9502969 Msa0054810:CDS
AGATTGTAAGAGAAGAACGA+CGG 0.709412 1_2:-9505006 Msa0054810:CDS
GAAAGGTGTGAACTTTACTG+TGG 0.710744 1_2:-9505362 Msa0054810:CDS
TTTGAAACCAAAGATCTGAG+GGG 0.744517 1_2:-9505164 Msa0054810:CDS
AAGGTGTGAACTTTACTGTG+GGG 0.832935 1_2:-9505360 Msa0054810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTGATTAGTTATTATA+TGG + chr1_2:9502172-9502191 None:intergenic 15.0%
!!! TATTTTCACTCTTAAAATTT+GGG - chr1_2:9504027-9504046 Msa0054810:intron 15.0%
!!! AATTTTTGTCACAAATTGAA+TGG + chr1_2:9502320-9502339 None:intergenic 20.0%
!!! TCTTTGAAACATCATAAATA+TGG + chr1_2:9502343-9502362 None:intergenic 20.0%
!! TAACAAATTGATCAAAATCA+GGG + chr1_2:9502692-9502711 None:intergenic 20.0%
!! ATAACAAATTGATCAAAATC+AGG + chr1_2:9502693-9502712 None:intergenic 20.0%
!!! TGATTTTGATCAATTTGTTA+TGG - chr1_2:9502692-9502711 Msa0054810:three_prime_UTR 20.0%
!! ATTTAAACCCAAAATTTGTA+TGG - chr1_2:9503569-9503588 Msa0054810:CDS 20.0%
!!! GTATTTTCACTCTTAAAATT+TGG - chr1_2:9504026-9504045 Msa0054810:intron 20.0%
!! TTACTTGATAGATCTTAAAT+AGG - chr1_2:9504206-9504225 Msa0054810:intron 20.0%
!!! CTCTAATACAATTTTAAGTT+GGG - chr1_2:9504229-9504248 Msa0054810:CDS 20.0%
!!! GGTAAATTTTTTACCTTTTT+CGG + chr1_2:9504569-9504588 None:intergenic 20.0%
!!! GGAAATCGAATTTTTAATTT+TGG - chr1_2:9504883-9504902 Msa0054810:intron 20.0%
!!! AATCGAATTTTTAATTTTGG+AGG - chr1_2:9504886-9504905 Msa0054810:intron 20.0%
!! ATATTATGGATCTAACTTAA+AGG - chr1_2:9505814-9505833 Msa0054810:five_prime_UTR 20.0%
!!! GAAATTTGTTCATTGATAAT+AGG - chr1_2:9505909-9505928 Msa0054810:five_prime_UTR 20.0%
! AGAAAACAAGAACAATTGAA+AGG + chr1_2:9502216-9502235 None:intergenic 25.0%
! AAGACAATAACATCACTTTA+AGG - chr1_2:9502260-9502279 Msa0054810:three_prime_UTR 25.0%
! TTCAGTTTGAATATGCAAAA+GGG + chr1_2:9502595-9502614 None:intergenic 25.0%
! TTTCAGTTTGAATATGCAAA+AGG + chr1_2:9502596-9502615 None:intergenic 25.0%
! TTGCATATTCAAACTGAAAA+TGG - chr1_2:9502597-9502616 Msa0054810:three_prime_UTR 25.0%
!! ATTTGTTTGTTGATGTAGAA+AGG - chr1_2:9502625-9502644 Msa0054810:three_prime_UTR 25.0%
! TGTAATGACATAAAGAACAA+TGG + chr1_2:9503123-9503142 None:intergenic 25.0%
!! TTTTTGTCTCATGATAATAG+TGG - chr1_2:9503155-9503174 Msa0054810:CDS 25.0%
!! TATCATGAAAATATGCCTTT+TGG - chr1_2:9503365-9503384 Msa0054810:CDS 25.0%
!! TTTCATGAAAAGTTTGAAGT+TGG - chr1_2:9503471-9503490 Msa0054810:CDS 25.0%
! TATATGAAATTGATGCTAGT+TGG - chr1_2:9503503-9503522 Msa0054810:CDS 25.0%
! TCCAAACTCATAAAAAAGTT+GGG + chr1_2:9503550-9503569 None:intergenic 25.0%
! ATCCAAACTCATAAAAAAGT+TGG + chr1_2:9503551-9503570 None:intergenic 25.0%
!!! GAATTCCTGTTTCTTTTAAA+TGG - chr1_2:9503634-9503653 Msa0054810:intron 25.0%
! TTTCACCATTTAAAAGAAAC+AGG + chr1_2:9503642-9503661 None:intergenic 25.0%
!!! TTTTTGTTTTTGTTTCAAGC+TGG - chr1_2:9503663-9503682 Msa0054810:intron 25.0%
!! TAGCTGTTTACATAATGTTT+TGG - chr1_2:9503892-9503911 Msa0054810:intron 25.0%
! CCTAAAATGAGTTTAAAAGT+GGG + chr1_2:9504103-9504122 None:intergenic 25.0%
! ACCTAAAATGAGTTTAAAAG+TGG + chr1_2:9504104-9504123 None:intergenic 25.0%
!!! GCTCTAATACAATTTTAAGT+TGG - chr1_2:9504228-9504247 Msa0054810:CDS 25.0%
! CTAAAAATGAGTTTATAAGC+GGG + chr1_2:9504300-9504319 None:intergenic 25.0%
! CCTAAAAATGAGTTTATAAG+CGG + chr1_2:9504301-9504320 None:intergenic 25.0%
! TTCTTAACATTCACATTACT+CGG - chr1_2:9504344-9504363 Msa0054810:intron 25.0%
! GCATAATTATTGCTTTATAC+AGG - chr1_2:9504394-9504413 Msa0054810:intron 25.0%
! TAAGTGAAATGTCCAAAAAA+GGG + chr1_2:9504522-9504541 None:intergenic 25.0%
! TTAAGTGAAATGTCCAAAAA+AGG + chr1_2:9504523-9504542 None:intergenic 25.0%
! AAAAATTCGATTTCCATATC+TGG + chr1_2:9504878-9504897 None:intergenic 25.0%
! TGGATATATATATATGCATG+TGG - chr1_2:9505401-9505420 Msa0054810:CDS 25.0%
! TGCAGAAAAAAGAAAAATCA+AGG - chr1_2:9505610-9505629 Msa0054810:CDS 25.0%
! GCAGAAAAAAGAAAAATCAA+GGG - chr1_2:9505611-9505630 Msa0054810:CDS 25.0%
!!! TGTTTCTATTTTTTGTGTGA+AGG - chr1_2:9505659-9505678 Msa0054810:CDS 25.0%
! AAGAGTCATGAATAATACAA+AGG + chr1_2:9505686-9505705 None:intergenic 25.0%
! ACATGTTTGTTCATTTAAAG+CGG - chr1_2:9505782-9505801 Msa0054810:five_prime_UTR 25.0%
TGAAAGGACAGAAAGAAATA+AGG + chr1_2:9502200-9502219 None:intergenic 30.0%
GTTCAAGGTTTGTGTATAAA+GGG + chr1_2:9502368-9502387 None:intergenic 30.0%
TAAGCTTGTAATCTGAAAGA+TGG + chr1_2:9502398-9502417 None:intergenic 30.0%
TCAGATTACAAGCTTAAACA+TGG - chr1_2:9502402-9502421 Msa0054810:three_prime_UTR 30.0%
AAGCTTAAACATGGTTTCAA+TGG - chr1_2:9502411-9502430 Msa0054810:three_prime_UTR 30.0%
! AGTTACAAGTAGCTTTTGAA+TGG + chr1_2:9502445-9502464 None:intergenic 30.0%
!! TTCAAACTAGTTCTACCAAT+TGG + chr1_2:9502471-9502490 None:intergenic 30.0%
CATCTGGGTATTCTTAAATT+AGG + chr1_2:9502498-9502517 None:intergenic 30.0%
TTTGTAATGGTTGTGAAAAG+AGG - chr1_2:9502523-9502542 Msa0054810:three_prime_UTR 30.0%
TTGTAATGGTTGTGAAAAGA+GGG - chr1_2:9502524-9502543 Msa0054810:three_prime_UTR 30.0%
TTGTTCTTCATTCTGTTGTT+TGG - chr1_2:9502563-9502582 Msa0054810:three_prime_UTR 30.0%
TGTTATGGCTAAACATTCAA+TGG - chr1_2:9502707-9502726 Msa0054810:three_prime_UTR 30.0%
GTTGATTAAGAGAAGAAGAT+TGG - chr1_2:9502773-9502792 Msa0054810:three_prime_UTR 30.0%
! ATTTGAAACCAAAGATCTGA+GGG - chr1_2:9502839-9502858 Msa0054810:CDS 30.0%
!!! GTTTTTTCAGCTATGTATTC+CGG - chr1_2:9503053-9503072 Msa0054810:CDS 30.0%
TCATGAGACAAAAAGCTATA+AGG + chr1_2:9503149-9503168 None:intergenic 30.0%
! TTTAAAACACAACACAACAG+AGG + chr1_2:9503200-9503219 None:intergenic 30.0%
!! TTTGAGTAAGTATCGAAAAC+AGG - chr1_2:9503313-9503332 Msa0054810:CDS 30.0%
!!! ACCCAACTTTTTTATGAGTT+TGG - chr1_2:9503546-9503565 Msa0054810:CDS 30.0%
! TCCAAAGCCATACAAATTTT+GGG + chr1_2:9503579-9503598 None:intergenic 30.0%
! ATCCAAAGCCATACAAATTT+TGG + chr1_2:9503580-9503599 None:intergenic 30.0%
!! AATTTGTATGGCTTTGGATT+AGG - chr1_2:9503581-9503600 Msa0054810:CDS 30.0%
ATAACAAAGAATGGAAGCAA+AGG - chr1_2:9503779-9503798 Msa0054810:intron 30.0%
! GTTTTTCTTCTGCAATTTTG+TGG - chr1_2:9503822-9503841 Msa0054810:intron 30.0%
AAGAAAAGACTAACAAGAAG+CGG - chr1_2:9504004-9504023 Msa0054810:intron 30.0%
TTCACTCTTAAAATTTGGGT+TGG - chr1_2:9504031-9504050 Msa0054810:intron 30.0%
! TCACTCTTAAAATTTGGGTT+GGG - chr1_2:9504032-9504051 Msa0054810:intron 30.0%
AAAATGAGTTTAAAAGTGGG+AGG + chr1_2:9504100-9504119 None:intergenic 30.0%
!! CCCACTTTTAAACTCATTTT+AGG - chr1_2:9504100-9504119 Msa0054810:intron 30.0%
!! CCATACAGTTTGATTTTGTA+GGG + chr1_2:9504265-9504284 None:intergenic 30.0%
!! ACCATACAGTTTGATTTTGT+AGG + chr1_2:9504266-9504285 None:intergenic 30.0%
AAAATCAAACTGTATGGTGA+GGG - chr1_2:9504268-9504287 Msa0054810:CDS 30.0%
!! CCGCTTATAAACTCATTTTT+AGG - chr1_2:9504298-9504317 Msa0054810:CDS 30.0%
AATGTTAAGAAATTCCACGT+TGG + chr1_2:9504335-9504354 None:intergenic 30.0%
TTATTGCTTTATACAGGCAA+TGG - chr1_2:9504400-9504419 Msa0054810:intron 30.0%
TCAAAGACATATTGATATCG+AGG + chr1_2:9504546-9504565 None:intergenic 30.0%
AATATGTCTTTGACCGAAAA+AGG - chr1_2:9504553-9504572 Msa0054810:intron 30.0%
ACTTTACTGCCAAAATTGTA+AGG - chr1_2:9504675-9504694 Msa0054810:intron 30.0%
ATCGTACAAAGGTAACATAA+TGG + chr1_2:9504984-9505003 None:intergenic 30.0%
ATGTTACCTTTGTACGATTA+AGG - chr1_2:9504986-9505005 Msa0054810:CDS 30.0%
TCTTGGTAGAGAAAAAAGAA+TGG + chr1_2:9505582-9505601 None:intergenic 30.0%
! TTTTCTGCATGTTATTCTCT+TGG + chr1_2:9505599-9505618 None:intergenic 30.0%
AAAAATCAAGGGACAAGAAA+GGG - chr1_2:9505622-9505641 Msa0054810:CDS 30.0%
! TTTTCAAATCCACATTCTCA+AGG + chr1_2:9505712-9505731 None:intergenic 30.0%
GAATGTGGATTTGAAAAAAG+AGG - chr1_2:9505715-9505734 Msa0054810:five_prime_UTR 30.0%
ATGGATCTAACTTAAAGGTA+TGG - chr1_2:9505819-9505838 Msa0054810:five_prime_UTR 30.0%
AAAATTACTGTTGTTGCTGT+TGG - chr1_2:9505849-9505868 Msa0054810:five_prime_UTR 30.0%
GGTTCAAGGTTTGTGTATAA+AGG + chr1_2:9502369-9502388 None:intergenic 35.0%
TAATCTGAAAGATGGTTGCA+TGG + chr1_2:9502390-9502409 None:intergenic 35.0%
CTACTTGTAACTTCTCCAAT+TGG - chr1_2:9502453-9502472 Msa0054810:three_prime_UTR 35.0%
CCATTACAAAAACTGCATCT+GGG + chr1_2:9502513-9502532 None:intergenic 35.0%
ACCATTACAAAAACTGCATC+TGG + chr1_2:9502514-9502533 None:intergenic 35.0%
! AAAGGTGTGAACTTTACTGT+GGG - chr1_2:9502643-9502662 Msa0054810:three_prime_UTR 35.0%
! GTTGTTGGAAATGAGAGTAT+TGG - chr1_2:9502744-9502763 Msa0054810:three_prime_UTR 35.0%
!! AAGAGAAGAAGATTGGTTTC+TGG - chr1_2:9502780-9502799 Msa0054810:three_prime_UTR 35.0%
!! AGAGAAGAAGATTGGTTTCT+GGG - chr1_2:9502781-9502800 Msa0054810:three_prime_UTR 35.0%
! GATTTGAAACCAAAGATCTG+AGG - chr1_2:9502838-9502857 Msa0054810:CDS 35.0%
! TTTGAAACCAAAGATCTGAG+GGG - chr1_2:9502840-9502859 Msa0054810:CDS 35.0%
!!! GGAAAATCTTGTTTTCCTGA+GGG - chr1_2:9502861-9502880 Msa0054810:CDS 35.0%
AGATTGTAAGAGAAGAACGA+CGG - chr1_2:9502998-9503017 Msa0054810:CDS 35.0%
TCATGATAATAGTGGCTCAA+AGG - chr1_2:9503163-9503182 Msa0054810:CDS 35.0%
CATGATAATAGTGGCTCAAA+GGG - chr1_2:9503164-9503183 Msa0054810:CDS 35.0%
!! AAACGCTAATTTTGTCGCTT+CGG + chr1_2:9503396-9503415 None:intergenic 35.0%
!!! GCGTTTTTTGATGAAGCTTT+TGG - chr1_2:9503410-9503429 Msa0054810:CDS 35.0%
GGTTTCAATTGAAGTTGTTC+CGG + chr1_2:9503529-9503548 None:intergenic 35.0%
ACCCAAAATTTGTATGGCTT+TGG - chr1_2:9503575-9503594 Msa0054810:CDS 35.0%
CAAAGCAAAGCAACATAGTA+AGG + chr1_2:9503608-9503627 None:intergenic 35.0%
!! CTTACTATGTTGCTTTGCTT+TGG - chr1_2:9503606-9503625 Msa0054810:intron 35.0%
!!! TTGTTTTTGTTTCAAGCTGG+TGG - chr1_2:9503666-9503685 Msa0054810:intron 35.0%
AAATGCAATCCATGAGAAAG+AGG - chr1_2:9503754-9503773 Msa0054810:intron 35.0%
AATGCAATCCATGAGAAAGA+GGG - chr1_2:9503755-9503774 Msa0054810:intron 35.0%
! AAAGAGGGCATAACAAAGAA+TGG - chr1_2:9503770-9503789 Msa0054810:intron 35.0%
!! AGGTATTGAGATTCTGATAC+TGG - chr1_2:9503799-9503818 Msa0054810:intron 35.0%
! GGTATTGAGATTCTGATACT+GGG - chr1_2:9503800-9503819 Msa0054810:intron 35.0%
!! CGGTTTTGTAGGATTAAGTT+CGG + chr1_2:9504058-9504077 None:intergenic 35.0%
TAACTCACATAACCTGATAG+CGG - chr1_2:9504182-9504201 Msa0054810:intron 35.0%
CCCTACAAAATCAAACTGTA+TGG - chr1_2:9504262-9504281 Msa0054810:CDS 35.0%
CAAAATCAAACTGTATGGTG+AGG - chr1_2:9504267-9504286 Msa0054810:CDS 35.0%
! ATTGCTCATAGAGTGTTCTA+TGG - chr1_2:9504439-9504458 Msa0054810:intron 35.0%
!!! AACAACCTATGACCCTTTTT+TGG - chr1_2:9504507-9504526 Msa0054810:intron 35.0%
AATGTCCAAAAAAGGGTCAT+AGG + chr1_2:9504515-9504534 None:intergenic 35.0%
GTTGTTTGGATATGTTCACT+CGG - chr1_2:9504626-9504645 Msa0054810:intron 35.0%
GTCTATTAGTAAACTCCCTT+TGG - chr1_2:9504723-9504742 Msa0054810:intron 35.0%
CATGCAAAGTAAGTACCAAA+GGG + chr1_2:9504741-9504760 None:intergenic 35.0%
ACATGCAAAGTAAGTACCAA+AGG + chr1_2:9504742-9504761 None:intergenic 35.0%
AGAATGGAAATTGTAGGTAG+CGG + chr1_2:9504813-9504832 None:intergenic 35.0%
AGGATAGAAGAGGACAAATA+TGG + chr1_2:9504850-9504869 None:intergenic 35.0%
TTGCTTCCTTAATCGTACAA+AGG + chr1_2:9504995-9505014 None:intergenic 35.0%
TTGTACGATTAAGGAAGCAA+TGG - chr1_2:9504995-9505014 Msa0054810:CDS 35.0%
! TGATGATGCTTGGATAACTA+AGG - chr1_2:9505026-9505045 Msa0054810:CDS 35.0%
!!! GAGATTTTGATTCCTATCAC+TGG - chr1_2:9505162-9505181 Msa0054810:CDS 35.0%
GATAAATTCAAACTGCGACA+AGG - chr1_2:9505344-9505363 Msa0054810:CDS 35.0%
ATGTCAACTGCAGTTTGAAA+TGG - chr1_2:9505426-9505445 Msa0054810:CDS 35.0%
GAAAAATCAAGGGACAAGAA+AGG - chr1_2:9505621-9505640 Msa0054810:CDS 35.0%
AAAATCAAGGGACAAGAAAG+GGG - chr1_2:9505623-9505642 Msa0054810:CDS 35.0%
! ACTCTTTTACCTTGAGAATG+TGG - chr1_2:9505700-9505719 Msa0054810:five_prime_UTR 35.0%
GAAAAAAGAGGTTGCTTCAT+TGG - chr1_2:9505727-9505746 Msa0054810:five_prime_UTR 35.0%
TGGTGCATAACAAACAAACA+AGG - chr1_2:9505747-9505766 Msa0054810:five_prime_UTR 35.0%
GGTGCATAACAAACAAACAA+GGG - chr1_2:9505748-9505767 Msa0054810:five_prime_UTR 35.0%
AAAGATGGTTGCATGGTTCA+AGG + chr1_2:9502383-9502402 None:intergenic 40.0%
! CCCAGATGCAGTTTTTGTAA+TGG - chr1_2:9502510-9502529 Msa0054810:three_prime_UTR 40.0%
! GAAAGGTGTGAACTTTACTG+TGG - chr1_2:9502642-9502661 Msa0054810:three_prime_UTR 40.0%
AAGGTGTGAACTTTACTGTG+GGG - chr1_2:9502644-9502663 Msa0054810:three_prime_UTR 40.0%
TCATTTCCAACAACACCTTG+TGG + chr1_2:9502738-9502757 None:intergenic 40.0%
!! GAAATGAGAGTATTGGTCAG+AGG - chr1_2:9502751-9502770 Msa0054810:three_prime_UTR 40.0%
!! GAGAAGAAGATTGGTTTCTG+GGG - chr1_2:9502782-9502801 Msa0054810:three_prime_UTR 40.0%
! AGATTTTCCCCTCAGATCTT+TGG + chr1_2:9502850-9502869 None:intergenic 40.0%
!!! GGGAAAATCTTGTTTTCCTG+AGG - chr1_2:9502860-9502879 Msa0054810:CDS 40.0%
! TTGTTTTCCTGAGGGTTTGA+GGG - chr1_2:9502869-9502888 Msa0054810:CDS 40.0%
TTTGAGGGGCTTGAACAATT+TGG - chr1_2:9502884-9502903 Msa0054810:CDS 40.0%
TTGAGGGGCTTGAACAATTT+GGG - chr1_2:9502885-9502904 Msa0054810:CDS 40.0%
AAGAAATAGTCCCTGAAAGG+AGG + chr1_2:9502957-9502976 None:intergenic 40.0%
CTCAAGAAATAGTCCCTGAA+AGG + chr1_2:9502960-9502979 None:intergenic 40.0%
! TTCAGGGACTATTTCTTGAG+TGG - chr1_2:9502960-9502979 Msa0054810:CDS 40.0%
ACTATAGGGATTTCGATCAC+CGG + chr1_2:9503075-9503094 None:intergenic 40.0%
AGAAACTGAGCAGGACTATA+GGG + chr1_2:9503089-9503108 None:intergenic 40.0%
ACAACACAACAGAGGCAAAT+TGG + chr1_2:9503192-9503211 None:intergenic 40.0%
GAGTCGACAATAAATGTGCT+TGG + chr1_2:9503439-9503458 None:intergenic 40.0%
TGAAATTGATGCTAGTTGGC+CGG - chr1_2:9503507-9503526 Msa0054810:CDS 40.0%
TTGTTATGCCCTCTTTCTCA+TGG + chr1_2:9503766-9503785 None:intergenic 40.0%
!! TCCTACAAAACCGACTTGTA+AGG - chr1_2:9504065-9504084 Msa0054810:intron 40.0%
!! ACCTTACAAGTCGGTTTTGT+AGG + chr1_2:9504069-9504088 None:intergenic 40.0%
TGAGTGTAAGAGTCTCACAT+TGG + chr1_2:9504137-9504156 None:intergenic 40.0%
CTATCAAGTAAACCGCTATC+AGG + chr1_2:9504197-9504216 None:intergenic 40.0%
AGGTTTATTCTTGTCCAACG+TGG - chr1_2:9504318-9504337 Msa0054810:CDS 40.0%
TTGCTTTATACAGGCAATGG+TGG - chr1_2:9504403-9504422 Msa0054810:intron 40.0%
GAGATCAGATGTTACCTGTA+TGG - chr1_2:9504468-9504487 Msa0054810:intron 40.0%
AAAAGGGTCATAGGTTGTTG+AGG + chr1_2:9504506-9504525 None:intergenic 40.0%
GTTGTCATTCGCATTCTGTT+TGG + chr1_2:9504590-9504609 None:intergenic 40.0%
ACTGCCAAAATTGTAAGGAG+AGG - chr1_2:9504680-9504699 Msa0054810:intron 40.0%
! TCTGCCTCTCCTTACAATTT+TGG + chr1_2:9504687-9504706 None:intergenic 40.0%
CCAAGGAGAATGGAAATTGT+AGG + chr1_2:9504819-9504838 None:intergenic 40.0%
CCTACAATTTCCATTCTCCT+TGG - chr1_2:9504816-9504835 Msa0054810:intron 40.0%
CAAATATGGAGTCATGTCCA+AGG + chr1_2:9504836-9504855 None:intergenic 40.0%
!! AATTTTGGAGGCGATGAATC+AGG - chr1_2:9504898-9504917 Msa0054810:intron 40.0%
TTGGATAACTAAGGTCGATG+AGG - chr1_2:9505035-9505054 Msa0054810:CDS 40.0%
ATCTCTCTTCCAGGTGAATT+TGG + chr1_2:9505147-9505166 None:intergenic 40.0%
GGAATCAAAATCTCTCTTCC+AGG + chr1_2:9505156-9505175 None:intergenic 40.0%
AAATTCAAACTGCGACAAGG+TGG - chr1_2:9505347-9505366 Msa0054810:CDS 40.0%
AAAAACGAGGCTGCTAATTG+TGG - chr1_2:9505381-9505400 Msa0054810:CDS 40.0%
! GTTCATTTAAAGCGGATGTG+AGG - chr1_2:9505790-9505809 Msa0054810:five_prime_UTR 40.0%
AGCGGATGTGAGGAATATTA+TGG - chr1_2:9505800-9505819 Msa0054810:five_prime_UTR 40.0%
! CATTCAATGGCTTTGCCACA+AGG - chr1_2:9502720-9502739 Msa0054810:three_prime_UTR 45.0%
!! AGAAGATTGGTTTCTGGGGT+TGG - chr1_2:9502786-9502805 Msa0054810:three_prime_UTR 45.0%
!! CTTGTTTTCCTGAGGGTTTG+AGG - chr1_2:9502868-9502887 Msa0054810:CDS 45.0%
! TGTTTTCCTGAGGGTTTGAG+GGG - chr1_2:9502870-9502889 Msa0054810:CDS 45.0%
! AGGGACTATTTCTTGAGTGG+TGG - chr1_2:9502963-9502982 Msa0054810:CDS 45.0%
!! CTTGAGTGGTGGACATAGTT+TGG - chr1_2:9502974-9502993 Msa0054810:CDS 45.0%
GAGAAACTGAGCAGGACTAT+AGG + chr1_2:9503090-9503109 None:intergenic 45.0%
GATTGCGATATTCAACGAGC+TGG - chr1_2:9503279-9503298 Msa0054810:CDS 45.0%
TCAACGAGCTGGAGATGAAT+TGG - chr1_2:9503290-9503309 Msa0054810:CDS 45.0%
TTTAGCGAGTTACGAACAGC+AGG - chr1_2:9503703-9503722 Msa0054810:intron 45.0%
TTGTGGTCTCATATGCACTG+CGG - chr1_2:9503839-9503858 Msa0054810:intron 45.0%
GCTTCTCTCACCTTACAAGT+CGG + chr1_2:9504078-9504097 None:intergenic 45.0%
GACAACATGTCGACACTTCT+CGG - chr1_2:9504604-9504623 Msa0054810:intron 45.0%
TCTATCCTCAGAGCCAGATA+TGG - chr1_2:9504862-9504881 Msa0054810:intron 45.0%
!! GATTTCCATATCTGGCTCTG+AGG + chr1_2:9504870-9504889 None:intergenic 45.0%
CACTGCGAAAATCTCGAACT+TGG + chr1_2:9504932-9504951 None:intergenic 45.0%
! CAAGTTCGAGATTTTCGCAG+TGG - chr1_2:9504930-9504949 Msa0054810:CDS 45.0%
TTTCGCAGTGGTGACACATT+CGG - chr1_2:9504942-9504961 Msa0054810:CDS 45.0%
!! GGTATCGATGTGATGATGCT+TGG - chr1_2:9505016-9505035 Msa0054810:CDS 45.0%
TTCCAGGTGAATTTGGAAGG+TGG + chr1_2:9505140-9505159 None:intergenic 45.0%
CTCTTCCAGGTGAATTTGGA+AGG + chr1_2:9505143-9505162 None:intergenic 45.0%
CTCTAGCAACAACCAGTGAT+AGG + chr1_2:9505177-9505196 None:intergenic 45.0%
! ATCACTGGTTGTTGCTAGAG+AGG - chr1_2:9505177-9505196 Msa0054810:CDS 45.0%
GCGAGAGAATCAAAGAGAGA+GGG + chr1_2:9505269-9505288 None:intergenic 45.0%
AGCGAGAGAATCAAAGAGAG+AGG + chr1_2:9505270-9505289 None:intergenic 45.0%
CTCTCTTTGATTCTCTCGCT+TGG - chr1_2:9505270-9505289 Msa0054810:CDS 45.0%
TTTGATTCTCTCGCTTGGCT+TGG - chr1_2:9505275-9505294 Msa0054810:CDS 45.0%
TTGATTCTCTCGCTTGGCTT+GGG - chr1_2:9505276-9505295 Msa0054810:CDS 45.0%
GGATGTGGAAACGAAAAACG+AGG - chr1_2:9505368-9505387 Msa0054810:CDS 45.0%
CAAGAAAGGGGTTATGTGGA+TGG - chr1_2:9505635-9505654 Msa0054810:CDS 45.0%
!! GCTTTGCCACAAGGTGTTGT+TGG - chr1_2:9502729-9502748 Msa0054810:three_prime_UTR 50.0%
TGCTACATGCACCTCCTTTC+AGG - chr1_2:9502943-9502962 Msa0054810:CDS 50.0%
GCTACATGCACCTCCTTTCA+GGG - chr1_2:9502944-9502963 Msa0054810:CDS 50.0%
GTCCTGCTCAGTTTCTCTAC+AGG - chr1_2:9503093-9503112 Msa0054810:CDS 50.0%
GACCTGTAGAGAAACTGAGC+AGG + chr1_2:9503098-9503117 None:intergenic 50.0%
GTCGCTTCGGTCATACCAAA+AGG + chr1_2:9503383-9503402 None:intergenic 50.0%
TGTGAGTTACACTCCAGAGC+TGG + chr1_2:9504171-9504190 None:intergenic 50.0%
GATGTTACCTGTATGGCCTG+TGG - chr1_2:9504475-9504494 Msa0054810:intron 50.0%
GGTTGTTGAGGTGAATCCAC+AGG + chr1_2:9504494-9504513 None:intergenic 50.0%
GTCGACACTTCTCGGTTGTT+TGG - chr1_2:9504612-9504631 Msa0054810:intron 50.0%
TGATCTGACCCTAGCTTCTC+TGG + chr1_2:9504652-9504671 None:intergenic 50.0%
GGAGTCATGTCCAAGGAGAA+TGG + chr1_2:9504829-9504848 None:intergenic 50.0%
!! TCTGGCTCTGAGGATAGAAG+AGG + chr1_2:9504860-9504879 None:intergenic 50.0%
TTCGCAGTGGTGACACATTC+GGG - chr1_2:9504943-9504962 Msa0054810:CDS 50.0%
AGCCACCTTCCAAATTCACC+TGG - chr1_2:9505135-9505154 Msa0054810:CDS 50.0%
TTGGCTTCAGGGGATCTCTT+CGG + chr1_2:9505231-9505250 None:intergenic 50.0%
AAACTGCGACAAGGTGGATG+TGG - chr1_2:9505353-9505372 Msa0054810:CDS 50.0%
GGGACAAGAAAGGGGTTATG+TGG - chr1_2:9505631-9505650 Msa0054810:CDS 50.0%
TTCAAGCCCCTCAAACCCTC+AGG + chr1_2:9502879-9502898 None:intergenic 55.0%
CAACCTCACACATCCAGCTC+TGG - chr1_2:9504155-9504174 Msa0054810:intron 55.0%
ACTCCAGAGCTGGATGTGTG+AGG + chr1_2:9504161-9504180 None:intergenic 55.0%
GGTGAATCCACAGGCCATAC+AGG + chr1_2:9504485-9504504 None:intergenic 55.0%
TTCACTCGGCCAGAGAAGCT+AGG - chr1_2:9504640-9504659 Msa0054810:intron 55.0%
TCACTCGGCCAGAGAAGCTA+GGG - chr1_2:9504641-9504660 Msa0054810:intron 55.0%
TCGCAGTGGTGACACATTCG+GGG - chr1_2:9504944-9504963 Msa0054810:CDS 55.0%
!! TCGCTGAGCATTGGCTTCAG+GGG + chr1_2:9505241-9505260 None:intergenic 55.0%
!! CTCGCTGAGCATTGGCTTCA+GGG + chr1_2:9505242-9505261 None:intergenic 55.0%
!! TCTCGCTGAGCATTGGCTTC+AGG + chr1_2:9505243-9505262 None:intergenic 55.0%
AGGGTTCTCTCGCTGAGCAT+TGG + chr1_2:9505250-9505269 None:intergenic 55.0%
CATTCGGGGACGCTCGAGTC+TGG - chr1_2:9504958-9504977 Msa0054810:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9502083 9505943 9502083 ID=Msa0054810;Name=Msa0054810
chr1_2 mRNA 9502083 9505943 9502083 ID=Msa0054810-mRNA-1;Parent=Msa0054810;Name=Msa0054810-mRNA-1;_AED=0.09;_eAED=0.09;_QI=265|1|1|1|1|1|3|749|554
chr1_2 exon 9502083 9503610 9502083 ID=Msa0054810-mRNA-1:exon:3564;Parent=Msa0054810-mRNA-1
chr1_2 exon 9504226 9504344 9504226 ID=Msa0054810-mRNA-1:exon:3563;Parent=Msa0054810-mRNA-1
chr1_2 exon 9504912 9505943 9504912 ID=Msa0054810-mRNA-1:exon:3562;Parent=Msa0054810-mRNA-1
chr1_2 five_prime_UTR 9505679 9505943 9505679 ID=Msa0054810-mRNA-1:five_prime_utr;Parent=Msa0054810-mRNA-1
chr1_2 CDS 9504912 9505678 9504912 ID=Msa0054810-mRNA-1:cds;Parent=Msa0054810-mRNA-1
chr1_2 CDS 9504226 9504344 9504226 ID=Msa0054810-mRNA-1:cds;Parent=Msa0054810-mRNA-1
chr1_2 CDS 9502832 9503610 9502832 ID=Msa0054810-mRNA-1:cds;Parent=Msa0054810-mRNA-1
chr1_2 three_prime_UTR 9502083 9502831 9502083 ID=Msa0054810-mRNA-1:three_prime_utr;Parent=Msa0054810-mRNA-1
Gene Sequence

>Msa0054810

ATGATGTTTCAAAGAAACCCTTTATACACAAACCTTGAACCATGCAACCATCTTTCAGATTACAAGCTTAAACATGGTTTCAATGGCTACAAAGCCATTCAAAAGCTACTTGTAACTTCTCCAATTGGTAGAACTAGTTTGAAAAAACCTAATTTAAGAATACCCAGATGCAGTTTTTGTAATGGTTGTGAAAAGAGGGTTTTTTTATGTTTGATTTGTTCTTCATTCTGTTGTTTGGATCATACCCTTTTGCATATTCAAACTGAAAATGGTCATGATTTGTTTGTTGATGTAGAAAGGTGTGAACTTTACTGTGGGGTGTGTTGTGATCAAATTTATGACCCTGATTTTGATCAATTTGTTATGGCTAAACATTCAATGGCTTTGCCACAAGGTGTTGTTGGAAATGAGAGTATTGGTCAGAGGTTGATTAAGAGAAGAAGATTGGTTTCTGGGGTTGGATTGTATTTGCAAAATGAATCTAAGTTTAGATTTGAAACCAAAGATCTGAGGGGAAAATCTTGTTTTCCTGAGGGTTTGAGGGGCTTGAACAATTTGGGTAGTACTTGTTTTATGAATTCTGTGTTGCAAGCATTGCTACATGCACCTCCTTTCAGGGACTATTTCTTGAGTGGTGGACATAGTTTGGAAGATTGTAAGAGAAGAACGACGGAACGATTGTGTTTGATTTGTGATATCAATGCTGTTTTTTCAGCTATGTATTCCGGTGATCGAAATCCCTATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTACGAACAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAAATGCAATCCATGAGAAAGAGGGCATAACAAAGAATGGAAGCAAAGGCAATGGTGGTGACTGTCAATGCATTGCTCATAGAGTGTTCTATGGACTATTGAGATCAGATGTTACCTGTATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTTTTTGGACATTTCACTTAACCTCGATATCAATATGTCTTTGACCGAAAAAGGTAAAAAATTTACCAAACAGAATGCGAATGACAACATGTCGACACTTCTCGGTTGTTTGGATATGTTCACTCGGCCAGAGAAGCTAGGGTCAGATCAGAAACTTTACTGCCAAAATTGTAAGGAGAGGCAGAACTCATTGAAGCAAATGTCTATTAGTAAACTCCCTTTGGTACTTACTTTGCATGTAAAACGATTTGAGCATTCTTTCGTTAAGAAGTTATCGAGAAAGATTGACCGCTACCTACAATTTCCATTCTCCTTGGACATGACTCCATATTTGTCCTCTTCTATCCTCAGAGCCAGATATGGAAATCGAATTTTTAATTTTGGAGGCGATGAATCAGGTATATTTTCCAAGTTCGAGATTTTCGCAGTGGTGACACATTCGGGGACGCTCGAGTCTGGCCATTATGTTACCTTTGTACGATTAAGGAAGCAATGGTATCGATGTGATGATGCTTGGATAACTAAGGTCGATGAGGCAACAGTAAGAGCTTCACAATGTTATATGATCTTCTATGTTCAGAAGACTTTGTTCAATAAAGCAAATGAAGATTTGAGCCACCTTCCAAATTCACCTGGAAGAGAGATTTTGATTCCTATCACTGGTTGTTGCTAG
Protein sequence

>Msa0054810

MMFQRNPLYTNLEPCNHLSDYKLKHGFNGYKAIQKLLVTSPIGRTSLKKPNLRIPRCSFCNGCEKRVFLCLICSSFCCLDHTLLHIQTENGHDLFVDVERCELYCGVCCDQIYDPDFDQFVMAKHSMALPQGVVGNESIGQRLIKRRRLVSGVGLYLQNESKFRFETKDLRGKSCFPEGLRGLNNLGSTCFMNSVLQALLHAPPFRDYFLSGGHSLEDCKRRTTERLCLICDINAVFSAMYSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLNAIHEKEGITKNGSKGNGGDCQCIAHRVFYGLLRSDVTCMACGFTSTTYDPFLDISLNLDINMSLTEKGKKFTKQNANDNMSTLLGCLDMFTRPEKLGSDQKLYCQNCKERQNSLKQMSISKLPLVLTLHVKRFEHSFVKKLSRKIDRYLQFPFSLDMTPYLSSSILRARYGNRIFNFGGDESGIFSKFEIFAVVTHSGTLESGHYVTFVRLRKQWYRCDDAWITKVDEATVRASQCYMIFYVQKTLFNKANEDLSHLPNSPGREILIPITGCC*