AlfalfaGEDB | Msa0054810

M. sativa cultivar zhongmu-4 / Msa0054810

KEGG: K11366
GO: -
PFAM: PF02148.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0054810	XP_024631050.1	96.390	554	20	0	1	554	1	554	0.0	1117

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0054810	sp\|Q9LEW0\|UBP22_ARATH	55.292	548	228	5	2	537	1	543	0.0	582

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0054810	A0A396JFF4	96.390	554	20	0	1	554	1	554	0.0	1117

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010770	Msa0054810	0.801198	1.008016e-48	-8.615850e-47
Msa0043650	Msa0054810	0.800289	1.545367e-48	-8.615850e-47
Msa0054810	Msa0057370	0.812250	4.659272e-51	-8.615850e-47
Msa0054810	Msa0308440	0.804233	2.383904e-49	-8.615850e-47
Msa0054810	Msa0324240	0.802449	5.580516e-49	-8.615850e-47
Msa0054810	Msa0392270	0.813594	2.365074e-51	-8.615850e-47
Msa0054810	Msa0432500	0.815545	8.751413e-52	-8.615850e-47
Msa0054810	Msa0829220	0.808488	3.021559e-50	-8.615850e-47
Msa0054810	Msa1130530	0.805597	1.236495e-49	-8.615850e-47
Msa0054810	Msa1332050	0.808524	2.969269e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0054810	MtrunA17_Chr1g0149991	96.390	554	20	0	1	554	1	554	0.0	1117
Msa0054810	MtrunA17_Chr4g0064671	63.454	249	73	4	300	533	9	254	1.21e-105	317
Msa0054810	MtrunA17_Chr4g0064681	40.785	331	127	8	13	286	12	330	5.26e-69	226
Msa0054810	MtrunA17_Chr4g0074041	31.609	348	188	11	182	524	93	395	1.38e-42	163
Msa0054810	MtrunA17_Chr5g0411271	30.295	373	208	10	155	525	128	450	1.19e-40	156
Msa0054810	MtrunA17_Chr6g0458421	31.519	349	184	12	182	525	30	328	2.36e-39	151
Msa0054810	MtrunA17_Chr6g0458441	31.461	356	187	13	177	525	121	426	5.64e-39	151
Msa0054810	MtrunA17_Chr6g0458431	31.232	349	185	12	182	525	95	393	2.05e-36	144
Msa0054810	MtrunA17_Chr3g0133061	27.841	352	197	12	182	524	585	888	5.46e-36	144
Msa0054810	MtrunA17_Chr5g0412381	28.409	352	197	11	182	526	425	728	1.69e-33	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0054810	AT5G10790.1	55.292	548	228	5	2	537	1	543	0.0	582
Msa0054810	AT5G10790.2	58.454	414	156	4	135	537	6	414	2.66e-159	461
Msa0054810	AT5G57990.1	31.503	346	190	8	182	524	108	409	3.00e-42	162
Msa0054810	AT4G17895.1	30.328	366	199	11	163	525	164	476	1.91e-37	147
Msa0054810	AT2G24640.2	30.086	349	190	12	182	522	5	307	3.93e-35	138
Msa0054810	AT2G24640.1	30.086	349	190	12	182	522	175	477	1.46e-34	139
Msa0054810	AT4G24560.1	26.724	348	206	8	182	524	543	846	9.04e-34	137
Msa0054810	AT2G22310.1	27.642	369	192	12	176	514	16	339	5.66e-32	127
Msa0054810	AT4G31670.1	27.874	348	199	11	182	522	169	471	1.12e-31	130
Msa0054810	AT4G39910.1	28.533	375	186	15	176	514	16	344	5.12e-31	124

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Find 139 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTCATAGGTTGTTG+AGG	0.592906	1_2:+9503501	None:intergenic
AAAATCAAGGGACAAGAAAG+GGG	0.635164	1_2:-9502381	Msa0054810:three_prime_UTR
AAAATTACTGTTGTTGCTGT+TGG	0.454482	1_2:-9502155	Msa0054810:three_prime_UTR
AAACTGCGACAAGGTGGATG+TGG	0.512625	1_2:-9502651	Msa0054810:three_prime_UTR
AAAGAGGGCATAACAAAGAA+TGG	0.481832	1_2:-9504234	Msa0054810:CDS
AAAGATGGTTGCATGGTTCA+AGG	0.440062	1_2:+9505624	None:intergenic
AAAGGTGTGAACTTTACTGT+GGG	0.645548	1_2:-9505361	Msa0054810:CDS
AAATGCAATCCATGAGAAAG+AGG	0.536619	1_2:-9504250	Msa0054810:CDS
AAATTCAAACTGCGACAAGG+TGG	0.674603	1_2:-9502657	Msa0054810:three_prime_UTR
AAGAAATAGTCCCTGAAAGG+AGG	0.599106	1_2:+9505050	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAAGGACAGAAAGAAATA+AGG	+	chr1_2:9502200-9502219	None:intergenic	30.0%
GTTCAAGGTTTGTGTATAAA+GGG	+	chr1_2:9502368-9502387	None:intergenic	30.0%
TAAGCTTGTAATCTGAAAGA+TGG	+	chr1_2:9502398-9502417	None:intergenic	30.0%
TCAGATTACAAGCTTAAACA+TGG	-	chr1_2:9502402-9502421	Msa0054810:three_prime_UTR	30.0%
AAGCTTAAACATGGTTTCAA+TGG	-	chr1_2:9502411-9502430	Msa0054810:three_prime_UTR	30.0%
CATCTGGGTATTCTTAAATT+AGG	+	chr1_2:9502498-9502517	None:intergenic	30.0%
TTTGTAATGGTTGTGAAAAG+AGG	-	chr1_2:9502523-9502542	Msa0054810:three_prime_UTR	30.0%
TTGTAATGGTTGTGAAAAGA+GGG	-	chr1_2:9502524-9502543	Msa0054810:three_prime_UTR	30.0%
TTGTTCTTCATTCTGTTGTT+TGG	-	chr1_2:9502563-9502582	Msa0054810:three_prime_UTR	30.0%
TGTTATGGCTAAACATTCAA+TGG	-	chr1_2:9502707-9502726	Msa0054810:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	9502083	9505943	9502083	ID=Msa0054810;Name=Msa0054810
chr1_2	mRNA	9502083	9505943	9502083	ID=Msa0054810-mRNA-1;Parent=Msa0054810;Name=Msa0054810-mRNA-1;_AED=0.09;_eAED=0.09;_QI=265\|1\|1\|1\|1\|1\|3\|749\|554
chr1_2	exon	9502083	9503610	9502083	ID=Msa0054810-mRNA-1:exon:3564;Parent=Msa0054810-mRNA-1
chr1_2	exon	9504226	9504344	9504226	ID=Msa0054810-mRNA-1:exon:3563;Parent=Msa0054810-mRNA-1
chr1_2	exon	9504912	9505943	9504912	ID=Msa0054810-mRNA-1:exon:3562;Parent=Msa0054810-mRNA-1
chr1_2	five_prime_UTR	9505679	9505943	9505679	ID=Msa0054810-mRNA-1:five_prime_utr;Parent=Msa0054810-mRNA-1
chr1_2	CDS	9504912	9505678	9504912	ID=Msa0054810-mRNA-1:cds;Parent=Msa0054810-mRNA-1
chr1_2	CDS	9504226	9504344	9504226	ID=Msa0054810-mRNA-1:cds;Parent=Msa0054810-mRNA-1
chr1_2	CDS	9502832	9503610	9502832	ID=Msa0054810-mRNA-1:cds;Parent=Msa0054810-mRNA-1
chr1_2	three_prime_UTR	9502083	9502831	9502083	ID=Msa0054810-mRNA-1:three_prime_utr;Parent=Msa0054810-mRNA-1

Gene Sequence

>Msa0054810

ATGATGTTTCAAAGAAACCCTTTATACACAAACCTTGAACCATGCAACCATCTTTCAGATTACAAGCTTAAACATGGTTTCAATGGCTACAAAGCCATTCAAAAGCTACTTGTAACTTCTCCAATTGGTAGAACTAGTTTGAAAAAACCTAATTTAAGAATACCCAGATGCAGTTTTTGTAATGGTTGTGAAAAGAGGGTTTTTTTATGTTTGATTTGTTCTTCATTCTGTTGTTTGGATCATACCCTTTTGCATATTCAAACTGAAAATGGTCATGATTTGTTTGTTGATGTAGAAAGGTGTGAACTTTACTGTGGGGTGTGTTGTGATCAAATTTATGACCCTGATTTTGATCAATTTGTTATGGCTAAACATTCAATGGCTTTGCCACAAGGTGTTGTTGGAAATGAGAGTATTGGTCAGAGGTTGATTAAGAGAAGAAGATTGGTTTCTGGGGTTGGATTGTATTTGCAAAATGAATCTAAGTTTAGATTTGAAACCAAAGATCTGAGGGGAAAATCTTGTTTTCCTGAGGGTTTGAGGGGCTTGAACAATTTGGGTAGTACTTGTTTTATGAATTCTGTGTTGCAAGCATTGCTACATGCACCTCCTTTCAGGGACTATTTCTTGAGTGGTGGACATAGTTTGGAAGATTGTAAGAGAAGAACGACGGAACGATTGTGTTTGATTTGTGATATCAATGCTGTTTTTTCAGCTATGTATTCCGGTGATCGAAATCCCTATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTACGAACAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAAATGCAATCCATGAGAAAGAGGGCATAACAAAGAATGGAAGCAAAGGCAATGGTGGTGACTGTCAATGCATTGCTCATAGAGTGTTCTATGGACTATTGAGATCAGATGTTACCTGTATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTTTTTGGACATTTCACTTAACCTCGATATCAATATGTCTTTGACCGAAAAAGGTAAAAAATTTACCAAACAGAATGCGAATGACAACATGTCGACACTTCTCGGTTGTTTGGATATGTTCACTCGGCCAGAGAAGCTAGGGTCAGATCAGAAACTTTACTGCCAAAATTGTAAGGAGAGGCAGAACTCATTGAAGCAAATGTCTATTAGTAAACTCCCTTTGGTACTTACTTTGCATGTAAAACGATTTGAGCATTCTTTCGTTAAGAAGTTATCGAGAAAGATTGACCGCTACCTACAATTTCCATTCTCCTTGGACATGACTCCATATTTGTCCTCTTCTATCCTCAGAGCCAGATATGGAAATCGAATTTTTAATTTTGGAGGCGATGAATCAGGTATATTTTCCAAGTTCGAGATTTTCGCAGTGGTGACACATTCGGGGACGCTCGAGTCTGGCCATTATGTTACCTTTGTACGATTAAGGAAGCAATGGTATCGATGTGATGATGCTTGGATAACTAAGGTCGATGAGGCAACAGTAAGAGCTTCACAATGTTATATGATCTTCTATGTTCAGAAGACTTTGTTCAATAAAGCAAATGAAGATTTGAGCCACCTTCCAAATTCACCTGGAAGAGAGATTTTGATTCCTATCACTGGTTGTTGCTAG

Protein sequence

>Msa0054810

MMFQRNPLYTNLEPCNHLSDYKLKHGFNGYKAIQKLLVTSPIGRTSLKKPNLRIPRCSFCNGCEKRVFLCLICSSFCCLDHTLLHIQTENGHDLFVDVERCELYCGVCCDQIYDPDFDQFVMAKHSMALPQGVVGNESIGQRLIKRRRLVSGVGLYLQNESKFRFETKDLRGKSCFPEGLRGLNNLGSTCFMNSVLQALLHAPPFRDYFLSGGHSLEDCKRRTTERLCLICDINAVFSAMYSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLNAIHEKEGITKNGSKGNGGDCQCIAHRVFYGLLRSDVTCMACGFTSTTYDPFLDISLNLDINMSLTEKGKKFTKQNANDNMSTLLGCLDMFTRPEKLGSDQKLYCQNCKERQNSLKQMSISKLPLVLTLHVKRFEHSFVKKLSRKIDRYLQFPFSLDMTPYLSSSILRARYGNRIFNFGGDESGIFSKFEIFAVVTHSGTLESGHYVTFVRLRKQWYRCDDAWITKVDEATVRASQCYMIFYVQKTLFNKANEDLSHLPNSPGREILIPITGCC*