AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0392270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392270 MtrunA17_Chr3g0077481 97.227 541 14 1 1 541 1 540 0.0 1066
Msa0392270 MtrunA17_Chr2g0276971 42.105 551 258 19 9 541 4 511 7.67e-101 313
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392270 AT1G33980.1 49.074 540 204 14 9 541 7 482 7.26e-142 418
Msa0392270 AT1G33980.2 48.708 542 205 15 9 541 7 484 6.65e-139 411

Find 182 sgRNAs with CRISPR-Local

Find 707 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCCCCGTCTGGTATTAC+TGG 0.197368 3_2:+5252457 None:intergenic
ACACGAGATGCTTATCATTT+TGG 0.234375 3_2:+5245105 None:intergenic
GAGTTTGCGGAGTTCTTTAA+TGG 0.236801 3_2:-5254919 Msa0392270:CDS
AACCCACGGAACCCACATTT+AGG 0.254362 3_2:+5245355 None:intergenic
ACATCATCCGCGTCCAATTC+AGG 0.265286 3_2:-5245817 Msa0392270:three_prime_UTR
GGTAAAAGAAAATGCTTATT+CGG 0.273466 3_2:-5247122 Msa0392270:CDS
ATTCTGAAGGGGAATCTAAA+AGG 0.281820 3_2:-5247483 Msa0392270:CDS
TCTTCTGAATCAAGTATAAA+AGG 0.294483 3_2:-5250671 Msa0392270:CDS
CTTGCCTTGCATAGCAGCTC+TGG 0.315043 3_2:+5252487 None:intergenic
AGGCGTCCACCTCGTCCTTT+TGG 0.319628 3_2:-5247559 Msa0392270:CDS
GGAATTTAGCTGTATAGTTT+TGG 0.320400 3_2:-5245478 Msa0392270:three_prime_UTR
GTCATACCTTCAACTGATTC+AGG 0.322351 3_2:+5247274 None:intergenic
TCTGTATGCAGAAACAAGTT+TGG 0.325968 3_2:-5246734 Msa0392270:intron
TTCCACCGGCTTCACGCCTT+TGG 0.335343 3_2:+5247680 None:intergenic
TGAATCATTTAGTAGGTGTT+TGG 0.336565 3_2:-5245438 Msa0392270:three_prime_UTR
GCTGCTATGCAAGGCAAGCC+TGG 0.337012 3_2:-5252482 Msa0392270:CDS
CAGGCCTGATCGTGGTGTTT+GGG 0.338312 3_2:-5247377 Msa0392270:CDS
CCATCATCCTTCACTATATA+GGG 0.349986 3_2:+5246884 None:intergenic
ACAGGCCTGATCGTGGTGTT+TGG 0.351241 3_2:-5247378 Msa0392270:CDS
CAGCACAACACAATACAAAC+TGG 0.368048 3_2:+5255887 None:intergenic
GAAGAAGAACCTGGTGTTGC+CGG 0.371559 3_2:+5255656 None:intergenic
GGCATTGAAGGTTCCGTCTC+TGG 0.374822 3_2:-5248663 Msa0392270:CDS
ACCATCATCCTTCACTATAT+AGG 0.376532 3_2:+5246883 None:intergenic
AGGGGAATCTAAAAGGGATT+TGG 0.379049 3_2:-5247476 Msa0392270:CDS
TTTCGAAGTTGGTTTCATTT+CGG 0.384883 3_2:-5255827 Msa0392270:five_prime_UTR
TGGTTCTGTTTAGAAGTAGA+TGG 0.386980 3_2:+5247700 None:intergenic
ACGGGGATCCGAAAAGAAAA+AGG 0.388091 3_2:-5252444 Msa0392270:intron
AGGCTCATGTCGACCTGAAT+TGG 0.394710 3_2:+5245804 None:intergenic
AAAATGCTTATTCGGGAAAC+AGG 0.394937 3_2:-5247114 Msa0392270:CDS
GAAGAAGATGAAGGCGCGTT+CGG 0.395141 3_2:-5255796 Msa0392270:exon
GACATTGTTAACCATGTTGA+TGG 0.397392 3_2:-5245563 Msa0392270:three_prime_UTR
AGAAGAATGGTCCTCACGCC+TGG 0.398858 3_2:+5250688 None:intergenic
TGGGTTCAGAAATCATCTTC+AGG 0.399182 3_2:-5246714 Msa0392270:CDS
CTGTATGCAGAAACAAGTTT+GGG 0.400640 3_2:-5246733 Msa0392270:intron
ATTGAGCTAGGGATCTGTTT+AGG 0.401238 3_2:-5245840 Msa0392270:three_prime_UTR
CGTGAAGGGACTATATATAA+AGG 0.410366 3_2:-5254189 Msa0392270:intron
AGAGAGAACAATTTCGAAGT+TGG 0.413999 3_2:-5255838 Msa0392270:five_prime_UTR
TTGCATTCCTTCAATTCTAC+AGG 0.415839 3_2:+5245629 None:intergenic
GATGAAGGCGCGTTCGGAAA+AGG 0.416038 3_2:-5255790 Msa0392270:CDS
GACAGAGCCTGTAGAATTGA+AGG 0.416637 3_2:-5245636 Msa0392270:three_prime_UTR
TTGAGGAACTCGAGATAGTC+TGG 0.416889 3_2:+5254047 None:intergenic
TCAGGCTCTTAAAATATTTG+TGG 0.419901 3_2:-5246696 Msa0392270:intron
AGGCTCTGTCAGGCAACAAC+TGG 0.421787 3_2:+5245649 None:intergenic
GTAAAAGAAAATGCTTATTC+GGG 0.425492 3_2:-5247121 Msa0392270:CDS
TCCAAAGCCGAGTACCAAAA+AGG 0.427328 3_2:-5254217 Msa0392270:CDS
TCCGAGTGCAGAAATACAAT+TGG 0.428949 3_2:-5253997 Msa0392270:CDS
CAAATCTTAACTTCTGAGAA+TGG 0.431636 3_2:-5247583 Msa0392270:CDS
GATCCCCGTCTGGTATTACT+GGG 0.431988 3_2:+5252458 None:intergenic
ACCCACGGAACCCACATTTA+GGG 0.445532 3_2:+5245356 None:intergenic
AAACTTTCAAAGAAAGGTGT+TGG 0.453145 3_2:-5246839 Msa0392270:CDS
ATGAAGGCGCGTTCGGAAAA+GGG 0.454196 3_2:-5255789 Msa0392270:CDS
ACTATATATGTCAAATGAAC+CGG 0.457668 3_2:+5245305 None:intergenic
CTTTCAGGCCACTGAAGGTA+TGG 0.458031 3_2:-5247761 Msa0392270:intron
CATCTTGTGTCAGGTTTCAT+CGG 0.460552 3_2:-5252534 Msa0392270:intron
TATACAGTGCATGGCATTGA+AGG 0.462061 3_2:-5248675 Msa0392270:CDS
GAGGCTTTGAAATGAGTTTG+AGG 0.464705 3_2:+5254030 None:intergenic
CACCCTAAATGTGGGTTCCG+TGG 0.465541 3_2:-5245358 Msa0392270:three_prime_UTR
AACTTTCAAAGAAAGGTGTT+GGG 0.465614 3_2:-5246838 Msa0392270:CDS
CAAATTATTACAAAATGATA+AGG 0.467235 3_2:-5245142 Msa0392270:three_prime_UTR
TTATACTTGATTCAGAAGAA+TGG 0.467658 3_2:+5250675 None:intergenic
GTGTTGAATGAGATCGGATT+CGG 0.469220 3_2:+5255725 None:intergenic
ATTACTAGAATGTGAAGAAT+CGG 0.475433 3_2:+5247339 None:intergenic
CTGTTTAACCATACCTTCAG+TGG 0.475898 3_2:+5247753 None:intergenic
CTAAATGATTCACTTTCCTA+TGG 0.476224 3_2:+5245449 None:intergenic
CGTCTGGTATTACTGGGGCC+AGG 0.479425 3_2:+5252464 None:intergenic
GTTTCTCTTCTCGCTATCAC+TGG 0.482546 3_2:-5255692 Msa0392270:CDS
CATTCCTGCTACATTGAGCT+AGG 0.482575 3_2:-5245852 Msa0392270:three_prime_UTR
TCTGACGTATATATGCCATC+AGG 0.484252 3_2:+5253771 None:intergenic
AGAAATACAATTGGAAAGAA+AGG 0.484703 3_2:-5253988 Msa0392270:CDS
CTTTATATATAGTCCCTTCA+CGG 0.485953 3_2:+5254190 None:intergenic
GGTGAATTCTCAACTTCTGC+AGG 0.489502 3_2:-5247088 Msa0392270:CDS
GCCATCAGGGGTGTGACAAT+AGG 0.490885 3_2:+5253785 None:intergenic
TTCTGAAGGGGAATCTAAAA+GGG 0.490928 3_2:-5247482 Msa0392270:CDS
GCAAACTCGAAAACATCATC+AGG 0.492867 3_2:+5254934 None:intergenic
ATCGATGTGTTGAATGAGAT+CGG 0.494137 3_2:+5255719 None:intergenic
AGGAAAGTGAATCATTTAGT+AGG 0.496563 3_2:-5245445 Msa0392270:three_prime_UTR
GATCCCTAGCTCAATGTAGC+AGG 0.504919 3_2:+5245848 None:intergenic
ACCCTAAATGTGGGTTCCGT+GGG 0.505363 3_2:-5245357 Msa0392270:three_prime_UTR
GAAAAGACACGAACCATACA+AGG 0.506281 3_2:+5245533 None:intergenic
TGTTTAGAAGTAGATGGAAT+GGG 0.510205 3_2:+5247706 None:intergenic
CAGAACCAAAGGCGTGAAGC+CGG 0.510490 3_2:-5247685 Msa0392270:CDS
ACAATGTCAAGAATGCTAAT+CGG 0.510501 3_2:-5250748 Msa0392270:CDS
TCATATCCTGAATCAGTTGA+AGG 0.510630 3_2:-5247280 Msa0392270:intron
TCAATTCTACAGGCTCTGTC+AGG 0.514091 3_2:+5245639 None:intergenic
AAGCCGGTGGAAGATTGATC+AGG 0.514442 3_2:-5247669 Msa0392270:CDS
GGTGCCCAAACACCACGATC+AGG 0.517553 3_2:+5247373 None:intergenic
TCGAGTAGGGTTTGTATGAA+AGG 0.517799 3_2:-5245283 Msa0392270:three_prime_UTR
TTGACATATATAGTCGAGTA+GGG 0.517838 3_2:-5245296 Msa0392270:three_prime_UTR
GAAGAATGGTCCTCACGCCT+GGG 0.520144 3_2:+5250689 None:intergenic
AACCCAGACCTTGAACCAAA+AGG 0.525585 3_2:+5247544 None:intergenic
TCCAATTGTATTTCTGCACT+CGG 0.526926 3_2:+5253996 None:intergenic
TCATCGGCCGCAACAAGAGT+TGG 0.528330 3_2:-5252518 Msa0392270:CDS
GAAGGGAAACTTTCAAAGAA+AGG 0.528593 3_2:-5246845 Msa0392270:CDS
ACAGACCTTACAAGTAGCTT+AGG 0.531857 3_2:+5245784 None:intergenic
TGCTGTTGACAGTGGTCCAC+TGG 0.532809 3_2:-5253744 Msa0392270:intron
ATGAGCCTAAGCTACTTGTA+AGG 0.533985 3_2:-5245789 Msa0392270:intron
CCCTATATAGTGAAGGATGA+TGG 0.537091 3_2:-5246884 Msa0392270:CDS
ATAGGATGTTAACATGTCTT+CGG 0.537587 3_2:-5245196 Msa0392270:three_prime_UTR
TGATGGGCTAGACCCTTGTA+TGG 0.539425 3_2:-5245546 Msa0392270:three_prime_UTR
CTGCCTTTACTGTGGTCCCC+AGG 0.539742 3_2:-5250706 Msa0392270:CDS
ACGCCTGGGGACCACAGTAA+AGG 0.540090 3_2:+5250703 None:intergenic
TGGTTGTCAGTATGTTCAGA+AGG 0.540774 3_2:-5250771 Msa0392270:intron
CTCCTTTCTAGGGGCTAGCA+AGG 0.541253 3_2:-5253813 Msa0392270:intron
TCAACTGATTCAGGATATGA+TGG 0.541254 3_2:+5247283 None:intergenic
AGAACCTGGTGTTGCCGGAA+CGG 0.547443 3_2:+5255661 None:intergenic
CTGTTTAGAAGTAGATGGAA+TGG 0.547700 3_2:+5247705 None:intergenic
ACCTATTGTCACACCCCTGA+TGG 0.547863 3_2:-5253786 Msa0392270:CDS
ACTCAACTACTGCTTTATGC+TGG 0.548532 3_2:+5254259 None:intergenic
AGTAGTCCCTCTGTTGAGAA+TGG 0.556313 3_2:-5247058 Msa0392270:intron
CTGACGTATATATGCCATCA+GGG 0.556567 3_2:+5253772 None:intergenic
CATGTCTCTAGTCATGATGC+TGG 0.556919 3_2:-5247514 Msa0392270:CDS
TTCGGTAAATAGTCATGTCA+AGG 0.559772 3_2:+5245594 None:intergenic
TTTAGCTTCACCCTAAATGT+GGG 0.559799 3_2:-5245366 Msa0392270:three_prime_UTR
AATGATAAGGAATGGCATGC+GGG 0.560780 3_2:-5245129 Msa0392270:three_prime_UTR
TATTACAAAATGATAAGGAA+TGG 0.560837 3_2:-5245137 Msa0392270:three_prime_UTR
CCTTCTGAAAGGAAAACAGC+GGG 0.562206 3_2:-5248601 Msa0392270:CDS
AGAGCCAGAGCTGCTATGCA+AGG 0.562280 3_2:-5252491 Msa0392270:CDS
TCTTAACTTCTGAGAATGGA+AGG 0.562840 3_2:-5247579 Msa0392270:CDS
GTGCAGTCAGTTCGAGTGAA+GGG 0.563790 3_2:-5246862 Msa0392270:CDS
GGAACAAACACAATTTAGTC+CGG 0.566913 3_2:-5245324 Msa0392270:three_prime_UTR
GAAGAACGAAAGTAGTGATA+CGG 0.568918 3_2:-5255767 Msa0392270:CDS
GGCTTTGGAACACGCTGAGA+AGG 0.570985 3_2:+5254231 None:intergenic
TACTGTGGTCCCCAGGCGTG+AGG 0.571346 3_2:-5250699 Msa0392270:CDS
TTTGACATATATAGTCGAGT+AGG 0.572107 3_2:-5245297 Msa0392270:three_prime_UTR
TGGAACTTTCAGGCCACTGA+AGG 0.573276 3_2:-5247766 Msa0392270:intron
TGGCCCCAGTAATACCAGAC+GGG 0.576005 3_2:-5252462 Msa0392270:CDS
GCTGGGCATGCTAATTCTGA+AGG 0.580615 3_2:-5247496 Msa0392270:CDS
GCTCCTGATCAATCTTCCAC+CGG 0.582381 3_2:+5247666 None:intergenic
ACATTGTTAACCATGTTGAT+GGG 0.583458 3_2:-5245562 Msa0392270:three_prime_UTR
ATTCCTGCTACATTGAGCTA+GGG 0.584979 3_2:-5245851 Msa0392270:three_prime_UTR
TGAGCTCTCATCATCCTCAC+TGG 0.585263 3_2:-5247317 Msa0392270:CDS
AGTGATAGCGAGAAGAGAAA+CGG 0.586244 3_2:+5255694 None:intergenic
AGAAAGGAAGCTGAGCAAGC+TGG 0.587029 3_2:-5253972 Msa0392270:intron
CACCAACCATTCTCAACAGA+GGG 0.588071 3_2:+5247052 None:intergenic
GCACTCGGAAGATGTTCTTG+AGG 0.590407 3_2:+5254011 None:intergenic
GGTGCAGTCAGTTCGAGTGA+AGG 0.593819 3_2:-5246863 Msa0392270:CDS
CTGGGCATGCTAATTCTGAA+GGG 0.594470 3_2:-5247495 Msa0392270:CDS
TCTTCTGCCAACTCTTGTTG+CGG 0.594967 3_2:+5252511 None:intergenic
GTCTTCGGTACAGCCAGATG+AGG 0.597981 3_2:-5245181 Msa0392270:three_prime_UTR
AGCACAACACAATACAAACT+GGG 0.599178 3_2:+5255888 None:intergenic
ATGTCTCTAGTCATGATGCT+GGG 0.599416 3_2:-5247513 Msa0392270:CDS
ATCAACATGGTTAACAATGT+CGG 0.601385 3_2:+5245565 None:intergenic
TCGGATTCGGTTAGAGATGG+TGG 0.601938 3_2:+5255738 None:intergenic
GAATTCTCAACTTCTGCAGG+TGG 0.610336 3_2:-5247085 Msa0392270:CDS
TTTCCTGAGTCAGAAGTCAG+TGG 0.613047 3_2:+5248636 None:intergenic
AGATCGGATTCGGTTAGAGA+TGG 0.613744 3_2:+5255735 None:intergenic
ATACCACTGACTTCTGACTC+AGG 0.622853 3_2:-5248639 Msa0392270:CDS
CTGGCCCCAGTAATACCAGA+CGG 0.624233 3_2:-5252463 Msa0392270:CDS
TGTTCCGCGTTTAGAACCCA+CGG 0.624670 3_2:+5245341 None:intergenic
AACCAAAGGCGTGAAGCCGG+TGG 0.625599 3_2:-5247682 Msa0392270:CDS
GACGTACTAGAAACAAGGAC+AGG 0.626561 3_2:-5247396 Msa0392270:CDS
CTACTTCTAAACAGAACCAA+AGG 0.632294 3_2:-5247696 Msa0392270:CDS
TCTTCGGTACAGCCAGATGA+GGG 0.634932 3_2:-5245180 Msa0392270:three_prime_UTR
GCAAACAGATTATGGACACT+CGG 0.636447 3_2:-5245909 Msa0392270:intron
TGGGGCTCCCTATATAGTGA+AGG 0.637270 3_2:-5246891 Msa0392270:CDS
ATTGATGAATATACAGTGCA+TGG 0.638195 3_2:-5248684 Msa0392270:CDS
AAATGATAAGGAATGGCATG+CGG 0.638715 3_2:-5245130 Msa0392270:three_prime_UTR
AACAAGGACAGGCCTGATCG+TGG 0.639778 3_2:-5247385 Msa0392270:CDS
AGTCAGTGGTATTCCAGAGA+CGG 0.644574 3_2:+5248650 None:intergenic
CAGAAGCGTGCTGTTGACAG+TGG 0.645146 3_2:-5253752 Msa0392270:CDS
TGGGCATGCTAATTCTGAAG+GGG 0.646561 3_2:-5247494 Msa0392270:CDS
GACCTTGAACCAAAAGGACG+AGG 0.650876 3_2:+5247550 None:intergenic
TGTTGGGAATAGTACTCATG+AGG 0.651580 3_2:-5246822 Msa0392270:intron
GCTTATTCGGGAAACAGGAG+TGG 0.655321 3_2:-5247109 Msa0392270:CDS
AGAAAGACGTACTAGAAACA+AGG 0.658009 3_2:-5247401 Msa0392270:CDS
AAGAATGGTCCTCACGCCTG+GGG 0.661060 3_2:+5250690 None:intergenic
ATGTCGACCTGAATTGGACG+CGG 0.663849 3_2:+5245810 None:intergenic
TCCTTCTGAAAGGAAAACAG+CGG 0.668874 3_2:-5248602 Msa0392270:CDS
CTTGAACCAAAAGGACGAGG+TGG 0.668946 3_2:+5247553 None:intergenic
GAAGAATCGGAACGGCGAAG+AGG 0.673314 3_2:+5247352 None:intergenic
ACACCAACCATTCTCAACAG+AGG 0.678931 3_2:+5247051 None:intergenic
AGACAAATCTGCCTTTACTG+TGG 0.679939 3_2:-5250714 Msa0392270:CDS
GGCCCCAGTAATACCAGACG+GGG 0.682231 3_2:-5252461 Msa0392270:CDS
AAGGGTCTAGCCCATCAACA+TGG 0.690955 3_2:+5245552 None:intergenic
TAGAATGTGAAGAATCGGAA+CGG 0.692170 3_2:+5247344 None:intergenic
GCAGTAGATGTAGACTGACT+CGG 0.696602 3_2:+5247619 None:intergenic
AAAAGACACGAACCATACAA+GGG 0.708140 3_2:+5245534 None:intergenic
GGTAAATAGTCATGTCAAGG+AGG 0.708304 3_2:+5245597 None:intergenic
ATCCCCGTCTGGTATTACTG+GGG 0.712694 3_2:+5252459 None:intergenic
TGACGTATATATGCCATCAG+GGG 0.713880 3_2:+5253773 None:intergenic
GGTTCCGTGGGTTCTAAACG+CGG 0.714563 3_2:-5245345 Msa0392270:three_prime_UTR
TGGTGCAGACTGTGCCAGTG+AGG 0.729152 3_2:+5247303 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATTTTTTAAAAATG+TGG - chr3_2:5248266-5248285 Msa0392270:intron 10.0%
!!! TTTTTAAAATATAATGCTTA+TGG + chr3_2:5251509-5251528 None:intergenic 10.0%
!!! AAAAGAAAATTAGTTTTAAT+TGG - chr3_2:5254676-5254695 Msa0392270:intron 10.0%
!!! AAAGAAAATTAGTTTTAATT+GGG - chr3_2:5254677-5254696 Msa0392270:intron 10.0%
!!! TATTGTAATTATTGTTGTTA+CGG - chr3_2:5245860-5245879 Msa0392270:three_prime_UTR 15.0%
!! AAGATAAAATCAAATCAAAT+TGG + chr3_2:5246377-5246396 None:intergenic 15.0%
!! AAAAAAATCAACATTTAGAA+AGG + chr3_2:5246686-5246705 None:intergenic 15.0%
!! CTATTAGAATTAAAAGAATA+AGG + chr3_2:5247477-5247496 None:intergenic 15.0%
!! ATATCATATCACATAAATAA+GGG + chr3_2:5247719-5247738 None:intergenic 15.0%
!! AGTATATATTATTATATTGC+TGG - chr3_2:5248608-5248627 Msa0392270:CDS 15.0%
!!! TTTTATTTTCTTTCCAATTT+GGG - chr3_2:5249063-5249082 Msa0392270:intron 15.0%
!! ATATAAAAAGAATGGAAAAA+GGG - chr3_2:5249208-5249227 Msa0392270:intron 15.0%
!! AAAAATAAATGAATGTGTTA+GGG - chr3_2:5249505-5249524 Msa0392270:intron 15.0%
!! TAGAAAGAATTGAAAAAAAT+GGG + chr3_2:5249608-5249627 None:intergenic 15.0%
!! ATAGAAAGAATTGAAAAAAA+TGG + chr3_2:5249609-5249628 None:intergenic 15.0%
!! TAGAAAGAATTGAAAAAAAT+GGG + chr3_2:5249608-5249627 None:intergenic 15.0%
!! ATAGAAAGAATTGAAAAAAA+TGG + chr3_2:5249609-5249628 None:intergenic 15.0%
!!! ATTTATTTTCTTTCTCTTTT+TGG - chr3_2:5249997-5250016 Msa0392270:intron 15.0%
!!! TTTATTTTCTTTCTCTTTTT+GGG - chr3_2:5249998-5250017 Msa0392270:intron 15.0%
!!! TTGTTCATTTTATAAATAGA+GGG + chr3_2:5251262-5251281 None:intergenic 15.0%
!!! ATTGTTCATTTTATAAATAG+AGG + chr3_2:5251263-5251282 None:intergenic 15.0%
!!! AATGATTAGAATTTTAGATT+GGG + chr3_2:5251544-5251563 None:intergenic 15.0%
!!! AAATGATTAGAATTTTAGAT+TGG + chr3_2:5251545-5251564 None:intergenic 15.0%
!! ACAAATTGACAAATTTAATT+TGG + chr3_2:5252199-5252218 None:intergenic 15.0%
!!! AAGAACATTATTTTCTTATA+AGG + chr3_2:5252542-5252561 None:intergenic 15.0%
!! ATTAAGCCAAAATTTAATAA+GGG + chr3_2:5252732-5252751 None:intergenic 15.0%
!! AATTAAGCCAAAATTTAATA+AGG + chr3_2:5252733-5252752 None:intergenic 15.0%
!! AAAACCAAAAAATAAGTTAA+GGG + chr3_2:5252918-5252937 None:intergenic 15.0%
!! GAAACAAAAAAATAAGTTAA+GGG - chr3_2:5253052-5253071 Msa0392270:intron 15.0%
!! AGTTCATAATGAAAAATTTA+AGG + chr3_2:5253216-5253235 None:intergenic 15.0%
!!! TACATTTTGTTATTACAAAT+AGG - chr3_2:5255793-5255812 Msa0392270:exon 15.0%
!! CAAATTATTACAAAATGATA+AGG - chr3_2:5255865-5255884 Msa0392270:five_prime_UTR 15.0%
!! AAAATGAAACAGAATTGTTA+GGG + chr3_2:5245390-5245409 None:intergenic 20.0%
!!! TTAGTTTTGCGTTTTTTATT+GGG - chr3_2:5245806-5245825 Msa0392270:three_prime_UTR 20.0%
!! AAATTTATATGTGCAGTTAT+AGG - chr3_2:5246011-5246030 Msa0392270:intron 20.0%
!!! TTTGTTTTTCATATGCAATA+TGG - chr3_2:5246199-5246218 Msa0392270:intron 20.0%
!! TTAAAAAGTGAAGGTTTAAA+TGG + chr3_2:5246543-5246562 None:intergenic 20.0%
!!! TTAAACCTTCACTTTTTAAA+AGG - chr3_2:5246544-5246563 Msa0392270:intron 20.0%
!!! TAAACCTTCACTTTTTAAAA+GGG - chr3_2:5246545-5246564 Msa0392270:intron 20.0%
!!! AAAAAGTGTAAATCAAATAC+AGG + chr3_2:5247079-5247098 None:intergenic 20.0%
!!! TGTTTTTTCTTATACTCTAA+AGG - chr3_2:5247316-5247335 Msa0392270:CDS 20.0%
!!! GTTTTTTCTTATACTCTAAA+GGG - chr3_2:5247317-5247336 Msa0392270:CDS 20.0%
!!! TTTTTTCTTATACTCTAAAG+GGG - chr3_2:5247318-5247337 Msa0392270:CDS 20.0%
!!! TTTTTTATAAGAATGTGCTT+TGG - chr3_2:5247384-5247403 Msa0392270:CDS 20.0%
!!! TTTTTATAAGAATGTGCTTT+GGG - chr3_2:5247385-5247404 Msa0392270:CDS 20.0%
!! TAGAATTAAAAGAATAAGGA+GGG + chr3_2:5247473-5247492 None:intergenic 20.0%
!! TTAGAATTAAAAGAATAAGG+AGG + chr3_2:5247474-5247493 None:intergenic 20.0%
!! CATATCATATCACATAAATA+AGG + chr3_2:5247720-5247739 None:intergenic 20.0%
!!! AACTTAATATAGCAGAATTT+TGG - chr3_2:5247858-5247877 Msa0392270:intron 20.0%
!! ATATTCATATGACTTATATG+AGG - chr3_2:5247991-5248010 Msa0392270:intron 20.0%
!! TATTCATATGACTTATATGA+GGG - chr3_2:5247992-5248011 Msa0392270:intron 20.0%
!!! TTTTAGTTGCTCAAATATAA+TGG + chr3_2:5248033-5248052 None:intergenic 20.0%
!! ATAAAAAAAAACAAACCAGT+TGG + chr3_2:5248156-5248175 None:intergenic 20.0%
!! TATATATAATTTCATCCAAC+AGG + chr3_2:5248376-5248395 None:intergenic 20.0%
!! CAGATAAATATAAGTTAAGA+TGG - chr3_2:5248413-5248432 Msa0392270:intron 20.0%
!! ATACTTGAACTTGATTATAA+AGG + chr3_2:5248593-5248612 None:intergenic 20.0%
!! TTGCACTAATGAAAATTAAT+AGG + chr3_2:5248701-5248720 None:intergenic 20.0%
!!! GATGACAAAATATTATTTCT+CGG + chr3_2:5248823-5248842 None:intergenic 20.0%
!!! GTTTTATTTTCTTTCCAATT+TGG - chr3_2:5249062-5249081 Msa0392270:intron 20.0%
!! ATTAATAAGAAAACCCAAAT+TGG + chr3_2:5249079-5249098 None:intergenic 20.0%
!! CTAACGTAATAAGAATTAAT+CGG + chr3_2:5249183-5249202 None:intergenic 20.0%
!! TAGATCACATATAAAAAGAA+TGG - chr3_2:5249200-5249219 Msa0392270:intron 20.0%
!! CATATAAAAAGAATGGAAAA+AGG - chr3_2:5249207-5249226 Msa0392270:intron 20.0%
!! CAAAAATAAATGAATGTGTT+AGG - chr3_2:5249504-5249523 Msa0392270:intron 20.0%
!! AAAAAAGCAATCAATTAAGA+AGG - chr3_2:5249658-5249677 Msa0392270:intron 20.0%
!! TCAATAAATGAATGTGTTAT+GGG - chr3_2:5249701-5249720 Msa0392270:intron 20.0%
!! AAAAAAGCAATCAATTAAGA+AGG - chr3_2:5249658-5249677 Msa0392270:intron 20.0%
!! TTAGATAAAAGATAATAGAC+TGG + chr3_2:5249905-5249924 None:intergenic 20.0%
!!! TTATCTTTTATCTAATGCTT+TGG - chr3_2:5249910-5249929 Msa0392270:intron 20.0%
!! AACATCTATATATCAACAAT+AGG + chr3_2:5250162-5250181 None:intergenic 20.0%
!! CAAAACTAATATTCATTAAG+TGG + chr3_2:5250218-5250237 None:intergenic 20.0%
!!! CACTTAATGAATATTAGTTT+TGG - chr3_2:5250216-5250235 Msa0392270:intron 20.0%
!! ATACATCTTGAAATCAAATA+TGG + chr3_2:5250579-5250598 None:intergenic 20.0%
!!! ATATTTGATTTCAAGATGTA+TGG - chr3_2:5250578-5250597 Msa0392270:intron 20.0%
!! TTTCCAGTTTAATATATAGA+TGG - chr3_2:5251104-5251123 Msa0392270:intron 20.0%
!! TGACATATGAATTAAACTTA+GGG + chr3_2:5251231-5251250 None:intergenic 20.0%
!!! TGTTCATTTTATAAATAGAG+GGG + chr3_2:5251261-5251280 None:intergenic 20.0%
!! GTCATTTATTGTAAATACAA+GGG + chr3_2:5251291-5251310 None:intergenic 20.0%
!!! TGTCATTTATTGTAAATACA+AGG + chr3_2:5251292-5251311 None:intergenic 20.0%
!!! TCTTATATTTCTTCTTTTCA+AGG + chr3_2:5251600-5251619 None:intergenic 20.0%
!!! AAATGCTTTTTGAAGAATAA+AGG - chr3_2:5251857-5251876 Msa0392270:intron 20.0%
!!! AATGCTTTTTGAAGAATAAA+GGG - chr3_2:5251858-5251877 Msa0392270:intron 20.0%
!!! TTTTTGCTGATTTAGTTTAA+AGG + chr3_2:5252037-5252056 None:intergenic 20.0%
!! ACAAAATTAAATTTCCAAAC+AGG - chr3_2:5252123-5252142 Msa0392270:intron 20.0%
!! ATCTATAAAAGTAAGTGAAA+TGG + chr3_2:5252499-5252518 None:intergenic 20.0%
!!! AATATGCCCTTATTAAATTT+TGG - chr3_2:5252723-5252742 Msa0392270:intron 20.0%
!!! TTTTGGCTTAATTAATGATT+TGG - chr3_2:5252740-5252759 Msa0392270:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG + chr3_2:5252798-5252817 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG + chr3_2:5253140-5253159 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr3_2:5252800-5252819 Msa0392270:intron 20.0%
!! GAAACCAAAAAGTAATTTAA+GGG + chr3_2:5252827-5252846 None:intergenic 20.0%
!!! ACGAAACTTTTAATAGTTAA+GGG + chr3_2:5253081-5253100 None:intergenic 20.0%
!!! AACGAAACTTTTAATAGTTA+AGG + chr3_2:5253080-5253099 None:intergenic 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG + chr3_2:5253021-5253040 None:intergenic 20.0%
!! CAAAACCAAAAAATAAGTTA+AGG + chr3_2:5252919-5252938 None:intergenic 20.0%
!!! CTTATTTTTTGGTTTTGTTT+TGG - chr3_2:5252922-5252941 Msa0392270:intron 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG - chr3_2:5253021-5253040 Msa0392270:intron 20.0%
!!! CTTATTTTTTTGTTTCGATT+TGG + chr3_2:5253048-5253067 None:intergenic 20.0%
!! CGAAACAAAAAAATAAGTTA+AGG - chr3_2:5253051-5253070 Msa0392270:intron 20.0%
!!! AACTATTAAAAGTTTCGTTT+TGG + chr3_2:5252860-5252879 None:intergenic 20.0%
!!! AACGAAACTTTTAATAGTTA+AGG - chr3_2:5253080-5253099 Msa0392270:intron 20.0%
!!! ACGAAACTTTTAATAGTTAA+GGG - chr3_2:5253081-5253100 Msa0392270:intron 20.0%
!! GAAATCAAAAAGTAAGTTAA+GGG - chr3_2:5253112-5253131 Msa0392270:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr3_2:5252800-5252819 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+AGG - chr3_2:5253140-5253159 Msa0392270:intron 20.0%
!! TTGTAACGTTAATAACTTAA+GGG - chr3_2:5253141-5253160 Msa0392270:intron 20.0%
!!! TTTTCATTATGAACTTTCTA+TGG - chr3_2:5253221-5253240 Msa0392270:intron 20.0%
!! AACTATAGAAGTTATTTATC+TGG - chr3_2:5254024-5254043 Msa0392270:CDS 20.0%
!! ACTATAGAAGTTATTTATCT+GGG - chr3_2:5254025-5254044 Msa0392270:CDS 20.0%
!!! TTCTTTTCTTTCTTTTCTTT+TGG + chr3_2:5254663-5254682 None:intergenic 20.0%
!! TCATAAGTCTAAATAAACTT+TGG - chr3_2:5254852-5254871 Msa0392270:intron 20.0%
!! AACAATTACTTGAAAAATTG+AGG - chr3_2:5255128-5255147 Msa0392270:intron 20.0%
!! ACAATTACTTGAAAAATTGA+GGG - chr3_2:5255129-5255148 Msa0392270:intron 20.0%
!!! TTTTCGAATATTTTGGTTTT+GGG - chr3_2:5255492-5255511 Msa0392270:intron 20.0%
!! TATTACAAAATGATAAGGAA+TGG - chr3_2:5255870-5255889 Msa0392270:five_prime_UTR 20.0%
! GAAAATGAAACAGAATTGTT+AGG + chr3_2:5245391-5245410 None:intergenic 25.0%
! AAAATGAAACTGAATCGTTA+GGG + chr3_2:5245645-5245664 None:intergenic 25.0%
! AAAAATGAAACTGAATCGTT+AGG + chr3_2:5245646-5245665 None:intergenic 25.0%
!!! CTTAGTTTTGCGTTTTTTAT+TGG - chr3_2:5245805-5245824 Msa0392270:three_prime_UTR 25.0%
! ATTATTGTTCTGATTATGTG+TGG - chr3_2:5245832-5245851 Msa0392270:three_prime_UTR 25.0%
!! TCTGTTTCAAATTCATTTTG+TGG - chr3_2:5246143-5246162 Msa0392270:intron 25.0%
! AACTCAGGTTTAAACAATTA+AGG + chr3_2:5246480-5246499 None:intergenic 25.0%
! AATGGAAAACATAATAACTC+AGG + chr3_2:5246525-5246544 None:intergenic 25.0%
!! ACTCAATTGAATGTTTTTCA+CGG - chr3_2:5246589-5246608 Msa0392270:intron 25.0%
! CAAAATTCTAACTTTCATTC+TGG - chr3_2:5246633-5246652 Msa0392270:intron 25.0%
! AGAAATACAATTGGAAAGAA+AGG - chr3_2:5247019-5247038 Msa0392270:intron 25.0%
!! TTTTATAAGAATGTGCTTTG+GGG - chr3_2:5247386-5247405 Msa0392270:CDS 25.0%
! AAATATATATTGTGAGCTGT+GGG - chr3_2:5247443-5247462 Msa0392270:CDS 25.0%
! GCTAGAACATATTATATCTA+TGG - chr3_2:5247517-5247536 Msa0392270:CDS 25.0%
! TATTTGAGCAACTAAAACTT+TGG - chr3_2:5248036-5248055 Msa0392270:intron 25.0%
!! TGAACAATTTTATTCATGCT+TGG - chr3_2:5248091-5248110 Msa0392270:intron 25.0%
!! GAACAATTTTATTCATGCTT+GGG - chr3_2:5248092-5248111 Msa0392270:intron 25.0%
!! AACAATTTTATTCATGCTTG+GGG - chr3_2:5248093-5248112 Msa0392270:intron 25.0%
!!! TTTATTTTGTTCTTTCCAAC+TGG - chr3_2:5248138-5248157 Msa0392270:intron 25.0%
!!! TATACTTTTTGTTCCTTCAT+TGG - chr3_2:5248234-5248253 Msa0392270:intron 25.0%
!!! ATACTTTTTGTTCCTTCATT+GGG - chr3_2:5248235-5248254 Msa0392270:intron 25.0%
! AATGCACTCATAAAATTTGT+TGG - chr3_2:5248291-5248310 Msa0392270:intron 25.0%
! TAGAATTAAGATTGCTACAA+AGG + chr3_2:5248756-5248775 None:intergenic 25.0%
! ATTAGTATTTGTCTACTAAG+TGG - chr3_2:5248797-5248816 Msa0392270:intron 25.0%
! GCATTAACTATTCAATTGAT+TGG - chr3_2:5249340-5249359 Msa0392270:intron 25.0%
! CAAACTAAAAACTAGACATA+AGG + chr3_2:5249368-5249387 None:intergenic 25.0%
!!! CTTAATTGATTGCTTTTTTC+TGG + chr3_2:5249657-5249676 None:intergenic 25.0%
! TAACACATTCATTTATTGAG+TGG + chr3_2:5249700-5249719 None:intergenic 25.0%
! CTCAATAAATGAATGTGTTA+TGG - chr3_2:5249700-5249719 Msa0392270:intron 25.0%
!!! CTTAATTGATTGCTTTTTTC+TGG + chr3_2:5249657-5249676 None:intergenic 25.0%
! TAAAAGATAATAGACTGGAA+AGG + chr3_2:5249900-5249919 None:intergenic 25.0%
! ATAGATGTGAATTGAAACAT+GGG - chr3_2:5250066-5250085 Msa0392270:intron 25.0%
! TTATACTTGATTCAGAAGAA+TGG + chr3_2:5250335-5250354 None:intergenic 25.0%
! TCTTCTGAATCAAGTATAAA+AGG - chr3_2:5250336-5250355 Msa0392270:intron 25.0%
!! CATATTAAGCTTTTGACAAA+GGG + chr3_2:5250534-5250553 None:intergenic 25.0%
!! ACATATTAAGCTTTTGACAA+AGG + chr3_2:5250535-5250554 None:intergenic 25.0%
! TATGTATATATGCCATGTAT+AGG + chr3_2:5250792-5250811 None:intergenic 25.0%
!!! TTTTCTACTTCGCTTTATTA+AGG + chr3_2:5250857-5250876 None:intergenic 25.0%
! CTCATATGATTATGATTGTT+AGG + chr3_2:5251005-5251024 None:intergenic 25.0%
! CTAACAATCATAATCATATG+AGG - chr3_2:5251003-5251022 Msa0392270:intron 25.0%
! AAGCCATCTATATATTAAAC+TGG + chr3_2:5251110-5251129 None:intergenic 25.0%
! GGAGTTTCAATTGATATTAT+AGG - chr3_2:5251170-5251189 Msa0392270:intron 25.0%
! GACATATGAATTAAACTTAG+GGG + chr3_2:5251230-5251249 None:intergenic 25.0%
! GTGACATATGAATTAAACTT+AGG + chr3_2:5251232-5251251 None:intergenic 25.0%
!! GTTCATTTTATAAATAGAGG+GGG + chr3_2:5251260-5251279 None:intergenic 25.0%
! ATTTATTGTAAATACAAGGG+AGG + chr3_2:5251288-5251307 None:intergenic 25.0%
!! CAATCGATTTATTCATATGA+AGG + chr3_2:5251393-5251412 None:intergenic 25.0%
! GTTCAAAACAATTGAAGAAT+GGG + chr3_2:5251576-5251595 None:intergenic 25.0%
! AGTTCAAAACAATTGAAGAA+TGG + chr3_2:5251577-5251596 None:intergenic 25.0%
!! AACAGTTTTTCTTTTAACGA+TGG - chr3_2:5251806-5251825 Msa0392270:intron 25.0%
!!! ATGCTTTTTGAAGAATAAAG+GGG - chr3_2:5251859-5251878 Msa0392270:intron 25.0%
! TTTAAAGGTTTGGAAAAAGT+GGG + chr3_2:5252022-5252041 None:intergenic 25.0%
! AATGCTTTATAGTAGAAAAG+TGG - chr3_2:5252056-5252075 Msa0392270:intron 25.0%
! TACTTTAATGCAAACATGTT+TGG + chr3_2:5252167-5252186 None:intergenic 25.0%
! CAGATAATTAAACCTACTTT+GGG + chr3_2:5252437-5252456 None:intergenic 25.0%
! ACAGATAATTAAACCTACTT+TGG + chr3_2:5252438-5252457 None:intergenic 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr3_2:5252767-5252786 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr3_2:5252768-5252787 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr3_2:5252771-5252790 Msa0392270:intron 25.0%
! CGAAACCAAAAAGTAATTTA+AGG + chr3_2:5252828-5252847 None:intergenic 25.0%
!!! ATTACTTTTTGGTTTCGTTT+TGG - chr3_2:5252831-5252850 Msa0392270:intron 25.0%
! CGAAACCAAAAAATAAGTTA+AGG + chr3_2:5253020-5253039 None:intergenic 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG - chr3_2:5252891-5252910 Msa0392270:intron 25.0%
! GATGAATGTATTAGAGTTAA+GGG - chr3_2:5252990-5253009 Msa0392270:intron 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG + chr3_2:5252891-5252910 None:intergenic 25.0%
! CGAAACCAAAAAATAAGTTA+AGG - chr3_2:5253020-5253039 Msa0392270:intron 25.0%
!!! CTTACTTTTTGATTTCGTTT+TGG + chr3_2:5253108-5253127 None:intergenic 25.0%
! CGAAATCAAAAAGTAAGTTA+AGG - chr3_2:5253111-5253130 Msa0392270:intron 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG + chr3_2:5252891-5252910 None:intergenic 25.0%
! CGAAACCAAAAAATAAGTTA+AGG - chr3_2:5253020-5253039 Msa0392270:intron 25.0%
!!! TGGTACCTTAACTTATTTTT+TGG + chr3_2:5253179-5253198 None:intergenic 25.0%
!! TTAAGGCTTAATTACTCTTT+TGG + chr3_2:5253199-5253218 None:intergenic 25.0%
!! TTTGTAAGAAGAGATTTTCA+TGG - chr3_2:5253562-5253581 Msa0392270:intron 25.0%
! ATTACTAGAATGTGAAGAAT+CGG + chr3_2:5253671-5253690 None:intergenic 25.0%
!!! CTTTGTTTTGAAATTTCAAG+TGG + chr3_2:5253812-5253831 None:intergenic 25.0%
! AGTGATTGAAATCTATTGTA+TGG - chr3_2:5253835-5253854 Msa0392270:intron 25.0%
! GGTAAAAGAAAATGCTTATT+CGG - chr3_2:5253885-5253904 Msa0392270:intron 25.0%
! GTAAAAGAAAATGCTTATTC+GGG - chr3_2:5253886-5253905 Msa0392270:intron 25.0%
!!! ATCGATTTTTTTATCTCTGT+AGG - chr3_2:5254069-5254088 Msa0392270:intron 25.0%
!!! ATACAGAAAAGCATTTTACA+GGG + chr3_2:5254260-5254279 None:intergenic 25.0%
! AAAACATTCTGTAAAACTTG+TGG - chr3_2:5254452-5254471 Msa0392270:intron 25.0%
!!! ATGATTGTTTTAGAAGAGTT+AGG + chr3_2:5254586-5254605 None:intergenic 25.0%
! AAAACAATCATGTGAATCTT+TGG - chr3_2:5254595-5254614 Msa0392270:intron 25.0%
!!! TTTTCTTTTGGTTTTCAACA+GGG + chr3_2:5254651-5254670 None:intergenic 25.0%
! TCATGTGAATTCATATTTCA+AGG + chr3_2:5254707-5254726 None:intergenic 25.0%
! TGTATATTTAGTTACACAGA+GGG + chr3_2:5254748-5254767 None:intergenic 25.0%
! ATGTATATTTAGTTACACAG+AGG + chr3_2:5254749-5254768 None:intergenic 25.0%
!!! AGTGAGTTTTAAGATGTTAA+AGG + chr3_2:5254952-5254971 None:intergenic 25.0%
! CAATTACTTGAAAAATTGAG+GGG - chr3_2:5255130-5255149 Msa0392270:intron 25.0%
! GACTTGTAATCAATTTCTAA+TGG - chr3_2:5255316-5255335 Msa0392270:intron 25.0%
!!! CTTTTCGAATATTTTGGTTT+TGG - chr3_2:5255491-5255510 Msa0392270:intron 25.0%
! ACTATATATGTCAAATGAAC+CGG + chr3_2:5255705-5255724 None:intergenic 25.0%
! TTTCGAAGTTGGTTTCATTT+CGG - chr3_2:5245180-5245199 Msa0392270:three_prime_UTR 30.0%
!!! AGCTGTTAGTCTTAGTTTTT+CGG - chr3_2:5245753-5245772 Msa0392270:intron 30.0%
! AATATGGAACGTAGCTTTTA+GGG - chr3_2:5246215-5246234 Msa0392270:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr3_2:5246335-5246354 None:intergenic 30.0%
ATTGGATTCATGTAAGCTTA+CGG + chr3_2:5246359-5246378 None:intergenic 30.0%
! AATTAAGGCTCTAATAACTC+AGG + chr3_2:5246495-5246514 None:intergenic 30.0%
AACTCAGGTCTAAACAATTA+AGG + chr3_2:5246510-5246529 None:intergenic 30.0%
!! CTAACCCTTTTAAAAAGTGA+AGG + chr3_2:5246552-5246571 None:intergenic 30.0%
!!! TCACTTTTTAAAAGGGTTAG+TGG - chr3_2:5246552-5246571 Msa0392270:intron 30.0%
ATCAGGCATTAATATTTGCA+TGG + chr3_2:5246714-5246733 None:intergenic 30.0%
TTAATGCCTGATATTCAATC+AGG - chr3_2:5246722-5246741 Msa0392270:CDS 30.0%
CTTTATATATAGTCCCTTCA+CGG + chr3_2:5246820-5246839 None:intergenic 30.0%
ATGCTAATTGTCTAGGTTAA+CGG - chr3_2:5246890-5246909 Msa0392270:CDS 30.0%
AAGTGTAAATCAAATACAGG+TGG + chr3_2:5247076-5247095 None:intergenic 30.0%
AAAAAACACTTATAGCTACG+AGG + chr3_2:5247370-5247389 None:intergenic 30.0%
GAAATATATATTGTGAGCTG+TGG - chr3_2:5247442-5247461 Msa0392270:CDS 30.0%
GTTTAAATTCTCGAGGAATT+TGG - chr3_2:5247570-5247589 Msa0392270:CDS 30.0%
TATCTCTGCCATAAAAATCA+TGG + chr3_2:5247836-5247855 None:intergenic 30.0%
! TTGGATTGGATTCTAACTTA+CGG - chr3_2:5248055-5248074 Msa0392270:intron 30.0%
AAGTATAGAGAGCTAACAAA+GGG + chr3_2:5248221-5248240 None:intergenic 30.0%
AAAGTATAGAGAGCTAACAA+AGG + chr3_2:5248222-5248241 None:intergenic 30.0%
! AAGGTTCACCTTTTTCTTTT+CGG + chr3_2:5248574-5248593 None:intergenic 30.0%
! CTTTTATGTCAACAAAGTCA+TGG + chr3_2:5248668-5248687 None:intergenic 30.0%
AATTAAGATTGCTACAAAGG+AGG + chr3_2:5248753-5248772 None:intergenic 30.0%
GCAATCTTAATTCTATGTGT+AGG - chr3_2:5248761-5248780 Msa0392270:intron 30.0%
TTTGTCATCTTATTGTTGCT+TGG - chr3_2:5248834-5248853 Msa0392270:intron 30.0%
AAACAAAACTGTCTGTGAAA+TGG - chr3_2:5248857-5248876 Msa0392270:intron 30.0%
! GTGTGGATTGAAAAAAAAGA+TGG - chr3_2:5249278-5249297 Msa0392270:intron 30.0%
!!! CACAAGAAATTTTTGAGACA+GGG + chr3_2:5249305-5249324 None:intergenic 30.0%
!! TTTTTCAACTACACCTAAAG+AGG - chr3_2:5249388-5249407 Msa0392270:intron 30.0%
! TTTTCAACTACACCTAAAGA+GGG - chr3_2:5249389-5249408 Msa0392270:intron 30.0%
CATTCATTTATTGAGTGGAA+TGG + chr3_2:5249695-5249714 None:intergenic 30.0%
GTTTCAATTCACATCTATCT+AGG + chr3_2:5250064-5250083 None:intergenic 30.0%
GATAGATGTGAATTGAAACA+TGG - chr3_2:5250065-5250084 Msa0392270:intron 30.0%
AAACAATCTGAAGACATACA+GGG + chr3_2:5250133-5250152 None:intergenic 30.0%
ACAATGTCAAGAATGCTAAT+CGG - chr3_2:5250259-5250278 Msa0392270:intron 30.0%
GCTGATCTAACAAAATCTAA+AGG + chr3_2:5250399-5250418 None:intergenic 30.0%
!! CTTTTTCATGTGAATATCTC+TGG - chr3_2:5250418-5250437 Msa0392270:intron 30.0%
ATAGTTATTCAGTTCTGTAG+CGG - chr3_2:5250447-5250466 Msa0392270:intron 30.0%
!! TAAGGAAGAGACTTTTGTTT+TGG + chr3_2:5250614-5250633 None:intergenic 30.0%
AACAGATATGATTAGGAGTT+GGG + chr3_2:5250661-5250680 None:intergenic 30.0%
! GTATAGGCTACTTTGATATT+GGG + chr3_2:5250776-5250795 None:intergenic 30.0%
! TGTATAGGCTACTTTGATAT+TGG + chr3_2:5250777-5250796 None:intergenic 30.0%
ATATCAAAGTAGCCTATACA+TGG - chr3_2:5250777-5250796 Msa0392270:intron 30.0%
ATAATCATATGAGGAGAAAC+TGG - chr3_2:5251012-5251031 Msa0392270:intron 30.0%
TAATCATATGAGGAGAAACT+GGG - chr3_2:5251013-5251032 Msa0392270:intron 30.0%
CAGCAAAGAAAAGAAACAAA+AGG + chr3_2:5251080-5251099 None:intergenic 30.0%
!! AGTCTACTTTTCCTATATAG+TGG - chr3_2:5251149-5251168 Msa0392270:intron 30.0%
CAATTGAAACTCCACTATAT+AGG + chr3_2:5251163-5251182 None:intergenic 30.0%
TATAGGACGAAATATCCTTA+AGG - chr3_2:5251187-5251206 Msa0392270:intron 30.0%
ATAGGACGAAATATCCTTAA+GGG - chr3_2:5251188-5251207 Msa0392270:intron 30.0%
ATATGAATTAAACTTAGGGG+AGG + chr3_2:5251227-5251246 None:intergenic 30.0%
CTACTTATTCACTTTGTCAT+AGG + chr3_2:5251750-5251769 None:intergenic 30.0%
! TTCTTTTAACGATGGCTTAA+CGG - chr3_2:5251814-5251833 Msa0392270:intron 30.0%
! TTAACGGTGTTAGAATTCAA+GGG - chr3_2:5251830-5251849 Msa0392270:intron 30.0%
!! TGCTTTTTGAAGAATAAAGG+GGG - chr3_2:5251860-5251879 Msa0392270:intron 30.0%
GGTAACAACATTTAAGGATA+GGG + chr3_2:5251932-5251951 None:intergenic 30.0%
AGGTAACAACATTTAAGGAT+AGG + chr3_2:5251933-5251952 None:intergenic 30.0%
GTTTAAAGGTTTGGAAAAAG+TGG + chr3_2:5252023-5252042 None:intergenic 30.0%
! GCTGATTTAGTTTAAAGGTT+TGG + chr3_2:5252032-5252051 None:intergenic 30.0%
ACACAACAAGTTTCTATACT+AGG + chr3_2:5252096-5252115 None:intergenic 30.0%
!!! CATTTTTTGGAAAACCTGTT+TGG + chr3_2:5252140-5252159 None:intergenic 30.0%
!!! CATGTTTGGAAAGCATTTTT+TGG + chr3_2:5252153-5252172 None:intergenic 30.0%
!! GACAAATTTAATTTGGCTGA+TGG + chr3_2:5252192-5252211 None:intergenic 30.0%
CAGCTAAAATACATGAAACT+TGG + chr3_2:5252265-5252284 None:intergenic 30.0%
ATTGATGAATATACAGTGCA+TGG - chr3_2:5252323-5252342 Msa0392270:intron 30.0%
! GTTGGAGTTAATCTTTGTTT+GGG - chr3_2:5252612-5252631 Msa0392270:intron 30.0%
!! TGGTCCCTTAAATTACTTTT+TGG - chr3_2:5252820-5252839 Msa0392270:intron 30.0%
!!! TGCTCCCTTAACTTATTTTT+TGG - chr3_2:5252880-5252899 Msa0392270:intron 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG - chr3_2:5252911-5252930 Msa0392270:intron 30.0%
ATACATTCATCCTAACGTAA+AGG + chr3_2:5252981-5253000 None:intergenic 30.0%
GGATGAATGTATTAGAGTTA+AGG - chr3_2:5252989-5253008 Msa0392270:intron 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG + chr3_2:5252911-5252930 None:intergenic 30.0%
TGTTTAGAAGTAGATGGAAT+GGG + chr3_2:5253304-5253323 None:intergenic 30.0%
! CAAATCTTAACTTCTGAGAA+TGG - chr3_2:5253424-5253443 Msa0392270:intron 30.0%
! AAGAAGAGATTTTCATGGTT+CGG - chr3_2:5253567-5253586 Msa0392270:intron 30.0%
!! AAAACTTGTTGTCTAGTCAA+TGG + chr3_2:5253758-5253777 None:intergenic 30.0%
GATTGAAATCTATTGTATGG+TGG - chr3_2:5253838-5253857 Msa0392270:intron 30.0%
!!! GGTGATTTTCAATTTTTAGC+AGG - chr3_2:5253859-5253878 Msa0392270:intron 30.0%
!!! TTTTCAATTTTTAGCAGGAG+AGG - chr3_2:5253864-5253883 Msa0392270:intron 30.0%
!! TGGTGTGTTTTTACTGATTA+TGG - chr3_2:5253973-5253992 Msa0392270:CDS 30.0%
! AAAGAATTTTTACTCGTCGT+GGG - chr3_2:5254097-5254116 Msa0392270:intron 30.0%
! AAACTTTCAAAGAAAGGTGT+TGG - chr3_2:5254168-5254187 Msa0392270:intron 30.0%
!! AACTTTCAAAGAAAGGTGTT+GGG - chr3_2:5254169-5254188 Msa0392270:intron 30.0%
!!! CATACAGAAAAGCATTTTAC+AGG + chr3_2:5254261-5254280 None:intergenic 30.0%
TCAGGCTCTTAAAATATTTG+TGG - chr3_2:5254311-5254330 Msa0392270:intron 30.0%
TTCAGAGTTTATTGCATCAA+TGG - chr3_2:5254388-5254407 Msa0392270:intron 30.0%
TCAGAGTTTATTGCATCAAT+GGG - chr3_2:5254389-5254408 Msa0392270:intron 30.0%
!!! CTTTTCTTTTGGTTTTCAAC+AGG + chr3_2:5254652-5254671 None:intergenic 30.0%
!! AGTGAGCTTTAAGATGTTAA+AGG - chr3_2:5254893-5254912 Msa0392270:intron 30.0%
CTTGTATGTAAAACATCCAA+AGG - chr3_2:5254974-5254993 Msa0392270:CDS 30.0%
CGAAAGTCTAAATAAACCTT+TGG + chr3_2:5254993-5255012 None:intergenic 30.0%
ACAACTTTGCAAACAGATTA+TGG - chr3_2:5255090-5255109 Msa0392270:intron 30.0%
ATCAACATGGTTAACAATGT+CGG + chr3_2:5255445-5255464 None:intergenic 30.0%
ACATTGTTAACCATGTTGAT+GGG - chr3_2:5255445-5255464 Msa0392270:intron 30.0%
! TCGTGTCTTTTCGAATATTT+TGG - chr3_2:5255485-5255504 Msa0392270:intron 30.0%
!! TTTTGGGAAATGTTTGTGTT+TGG - chr3_2:5255508-5255527 Msa0392270:intron 30.0%
! GGAATTTAGCTGTATAGTTT+TGG - chr3_2:5255529-5255548 Msa0392270:intron 30.0%
CTAAATGATTCACTTTCCTA+TGG + chr3_2:5255561-5255580 None:intergenic 30.0%
AGGAAAGTGAATCATTTAGT+AGG - chr3_2:5255562-5255581 Msa0392270:intron 30.0%
TGAATCATTTAGTAGGTGTT+TGG - chr3_2:5255569-5255588 Msa0392270:intron 30.0%
! TTTAGGGTGAAGCTAAAAAT+TGG + chr3_2:5255638-5255657 None:intergenic 30.0%
TTTGACATATATAGTCGAGT+AGG - chr3_2:5255710-5255729 Msa0392270:CDS 30.0%
TTGACATATATAGTCGAGTA+GGG - chr3_2:5255711-5255730 Msa0392270:CDS 30.0%
ATAGGATGTTAACATGTCTT+CGG - chr3_2:5255811-5255830 Msa0392270:exon 30.0%
AGCACAACACAATACAAACT+GGG + chr3_2:5245122-5245141 None:intergenic 35.0%
CTGAAAAAGAAGAACGAAAG+AGG - chr3_2:5245140-5245159 Msa0392270:three_prime_UTR 35.0%
AGAGAGAACAATTTCGAAGT+TGG - chr3_2:5245169-5245188 Msa0392270:three_prime_UTR 35.0%
GAAGAAGAAGAAGAAGATGA+AGG - chr3_2:5245202-5245221 Msa0392270:three_prime_UTR 35.0%
GAAGAACGAAAGTAGTGATA+CGG - chr3_2:5245240-5245259 Msa0392270:three_prime_UTR 35.0%
ATCGATGTGTTGAATGAGAT+CGG + chr3_2:5245291-5245310 None:intergenic 35.0%
!!! TGATGATGTTTTCGAGTTTG+CGG - chr3_2:5246075-5246094 Msa0392270:intron 35.0%
! CAATATGGAACGTAGCTTTT+AGG - chr3_2:5246214-5246233 Msa0392270:intron 35.0%
!!! TTTTAGGGCATGTTTGGATT+GGG - chr3_2:5246230-5246249 Msa0392270:intron 35.0%
CGTGAAGGGACTATATATAA+AGG - chr3_2:5246818-5246837 Msa0392270:intron 35.0%
! AGAACGCTTTTATATCTCGA+TGG + chr3_2:5246869-5246888 None:intergenic 35.0%
CGTTCTAATGCTAATTGTCT+AGG - chr3_2:5246883-5246902 Msa0392270:CDS 35.0%
! TCCAATTGTATTTCTGCACT+CGG + chr3_2:5247014-5247033 None:intergenic 35.0%
! CAAGCTGGTTAGTTATATGT+AGG - chr3_2:5247140-5247159 Msa0392270:intron 35.0%
! TCATTTTCTCCTCCTTTCTA+GGG - chr3_2:5247184-5247203 Msa0392270:intron 35.0%
GTCTTTCTTACTCGAATTCA+AGG + chr3_2:5247417-5247436 None:intergenic 35.0%
!! ACGTCTTGTTTAAATTCTCG+AGG - chr3_2:5247563-5247582 Msa0392270:CDS 35.0%
! ACTTGATAACAATGTAGGAC+AGG + chr3_2:5247743-5247762 None:intergenic 35.0%
! CTGCTACTTGATAACAATGT+AGG + chr3_2:5247748-5247767 None:intergenic 35.0%
CAACACATAGCATAACTACT+TGG - chr3_2:5247964-5247983 Msa0392270:intron 35.0%
TCATATGACTTATATGAGGG+AGG - chr3_2:5247995-5248014 Msa0392270:intron 35.0%
GAGCAACTAAAACTTTGGAT+TGG - chr3_2:5248041-5248060 Msa0392270:intron 35.0%
AGTATAGAGAGCTAACAAAG+GGG + chr3_2:5248220-5248239 None:intergenic 35.0%
ATTATGCCTTCACATGATTG+TGG - chr3_2:5248335-5248354 Msa0392270:intron 35.0%
TTAAAGCCACAATCATGTGA+AGG + chr3_2:5248344-5248363 None:intergenic 35.0%
AAACTGTCTGTGAAATGGTT+AGG - chr3_2:5248862-5248881 Msa0392270:intron 35.0%
AACTGTCTGTGAAATGGTTA+GGG - chr3_2:5248863-5248882 Msa0392270:intron 35.0%
AATGCCTCTATAGTCAGTAA+CGG + chr3_2:5248935-5248954 None:intergenic 35.0%
TGTCGCAATATGAAAATGTG+TGG - chr3_2:5249261-5249280 Msa0392270:intron 35.0%
!!! GCACAAGAAATTTTTGAGAC+AGG + chr3_2:5249306-5249325 None:intergenic 35.0%
!! TACATTCAGTGGGTTATGTA+TGG - chr3_2:5249554-5249573 Msa0392270:intron 35.0%
!! ACATTCAGTGGGTTATGTAT+GGG - chr3_2:5249555-5249574 Msa0392270:intron 35.0%
!! TACATTCAGTGGGTTATGTA+TGG - chr3_2:5249554-5249573 Msa0392270:intron 35.0%
!! ACATTCAGTGGGTTATGTAT+GGG - chr3_2:5249555-5249574 Msa0392270:intron 35.0%
AGATAATAGACTGGAAAGGA+GGG + chr3_2:5249896-5249915 None:intergenic 35.0%
AAGATAATAGACTGGAAAGG+AGG + chr3_2:5249897-5249916 None:intergenic 35.0%
AGAAATGTTGAGTCACTGTT+TGG + chr3_2:5249967-5249986 None:intergenic 35.0%
!!! TTTCTTTCTCTTTTTGGGTG+TGG - chr3_2:5250003-5250022 Msa0392270:intron 35.0%
AATCAAGTTAGCATGGTAGA+GGG - chr3_2:5250092-5250111 Msa0392270:intron 35.0%
AACAATCTGAAGACATACAG+GGG + chr3_2:5250132-5250151 None:intergenic 35.0%
CAAACAATCTGAAGACATAC+AGG + chr3_2:5250134-5250153 None:intergenic 35.0%
AAAACTGAAGACAGTGAACT+TGG + chr3_2:5250511-5250530 None:intergenic 35.0%
ACAGAGACAAAAGCTGTATA+AGG + chr3_2:5250632-5250651 None:intergenic 35.0%
GAACAGATATGATTAGGAGT+TGG + chr3_2:5250662-5250681 None:intergenic 35.0%
AGCAACGAACAGATATGATT+AGG + chr3_2:5250668-5250687 None:intergenic 35.0%
TCATATCTGTTCGTTGCTTA+TGG - chr3_2:5250670-5250689 Msa0392270:CDS 35.0%
! ACTTCGCTTTATTAAGGAGT+TGG + chr3_2:5250851-5250870 None:intergenic 35.0%
AATCATATGAGGAGAAACTG+GGG - chr3_2:5251014-5251033 Msa0392270:intron 35.0%
AATATATAGATGGCTTCCTC+TGG - chr3_2:5251114-5251133 Msa0392270:intron 35.0%
AGGATAGCCTCAAAATCAAA+CGG + chr3_2:5251343-5251362 None:intergenic 35.0%
GATAGGAAAAAATGCACATG+AGG + chr3_2:5251363-5251382 None:intergenic 35.0%
CATATGAAGGTCGTATAGAT+AGG + chr3_2:5251380-5251399 None:intergenic 35.0%
!! TCATGGAGAAAGTGTGATTT+TGG + chr3_2:5251459-5251478 None:intergenic 35.0%
!! AAGAAGCAAGCTTTATTGAG+TGG - chr3_2:5251625-5251644 Msa0392270:intron 35.0%
AGTCTCAACAACTTCATTCA+TGG + chr3_2:5251654-5251673 None:intergenic 35.0%
GGTTGCATAGTGAATTATTC+TGG - chr3_2:5251684-5251703 Msa0392270:intron 35.0%
! CTTAACGGTGTTAGAATTCA+AGG - chr3_2:5251829-5251848 Msa0392270:intron 35.0%
TGACATATTAGTAGACCTCA+GGG - chr3_2:5251889-5251908 Msa0392270:intron 35.0%
CTTCACTTCTTCAGTATAGT+TGG + chr3_2:5251960-5251979 None:intergenic 35.0%
AAAAAGATCCTCCTTCTGAA+AGG - chr3_2:5252395-5252414 Msa0392270:intron 35.0%
AACTCCAACGTTAGATAGAA+CGG + chr3_2:5252601-5252620 None:intergenic 35.0%
CGTTGGAGTTAATCTTTGTT+TGG - chr3_2:5252611-5252630 Msa0392270:intron 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr3_2:5252760-5252779 Msa0392270:intron 35.0%
GAACTTTCTATGGAACTTTC+AGG - chr3_2:5253231-5253250 Msa0392270:intron 35.0%
CTGTTTAGAAGTAGATGGAA+TGG + chr3_2:5253305-5253324 None:intergenic 35.0%
! TGGTTCTGTTTAGAAGTAGA+TGG + chr3_2:5253310-5253329 None:intergenic 35.0%
CTACTTCTAAACAGAACCAA+AGG - chr3_2:5253311-5253330 Msa0392270:intron 35.0%
! TCTTAACTTCTGAGAATGGA+AGG - chr3_2:5253428-5253447 Msa0392270:intron 35.0%
! ATTCTGAAGGGGAATCTAAA+AGG - chr3_2:5253524-5253543 Msa0392270:intron 35.0%
! TTCTGAAGGGGAATCTAAAA+GGG - chr3_2:5253525-5253544 Msa0392270:intron 35.0%
! AGAAGAGATTTTCATGGTTC+GGG - chr3_2:5253568-5253587 Msa0392270:intron 35.0%
AGAAAGACGTACTAGAAACA+AGG - chr3_2:5253606-5253625 Msa0392270:intron 35.0%
TAGAATGTGAAGAATCGGAA+CGG + chr3_2:5253666-5253685 None:intergenic 35.0%
! TCAACTGATTCAGGATATGA+TGG + chr3_2:5253727-5253746 None:intergenic 35.0%
TCATATCCTGAATCAGTTGA+AGG - chr3_2:5253727-5253746 Msa0392270:intron 35.0%
AAAATGCTTATTCGGGAAAC+AGG - chr3_2:5253893-5253912 Msa0392270:intron 35.0%
! CAAAGAATTTTTACTCGTCG+TGG - chr3_2:5254096-5254115 Msa0392270:intron 35.0%
! AAGAATTTTTACTCGTCGTG+GGG - chr3_2:5254098-5254117 Msa0392270:intron 35.0%
CCATCATCCTTCACTATATA+GGG + chr3_2:5254126-5254145 None:intergenic 35.0%
ACCATCATCCTTCACTATAT+AGG + chr3_2:5254127-5254146 None:intergenic 35.0%
GAAGGGAAACTTTCAAAGAA+AGG - chr3_2:5254162-5254181 Msa0392270:intron 35.0%
TCTGTATGCAGAAACAAGTT+TGG - chr3_2:5254273-5254292 Msa0392270:intron 35.0%
CTGTATGCAGAAACAAGTTT+GGG - chr3_2:5254274-5254293 Msa0392270:intron 35.0%
CAGAGTTTATTGCATCAATG+GGG - chr3_2:5254390-5254409 Msa0392270:intron 35.0%
AGAGTTTATTGCATCAATGG+GGG - chr3_2:5254391-5254410 Msa0392270:intron 35.0%
GAGTTAGGAACAATAGATCA+AGG + chr3_2:5254571-5254590 None:intergenic 35.0%
! ACTTTGGATGTTTTACACAC+AGG - chr3_2:5254868-5254887 Msa0392270:intron 35.0%
TTGCATTCCTTCAATTCTAC+AGG + chr3_2:5255381-5255400 None:intergenic 35.0%
TTCGGTAAATAGTCATGTCA+AGG + chr3_2:5255416-5255435 None:intergenic 35.0%
! TAACAATGTCGGTCTGTTTT+CGG + chr3_2:5255434-5255453 None:intergenic 35.0%
GACATTGTTAACCATGTTGA+TGG - chr3_2:5255444-5255463 Msa0392270:intron 35.0%
AAAAGACACGAACCATACAA+GGG + chr3_2:5255476-5255495 None:intergenic 35.0%
!!! ATAGTTTTGGTACTTGCCAT+AGG - chr3_2:5255542-5255561 Msa0392270:intron 35.0%
!!! TTTTAGCTTCACCCTAAATG+TGG - chr3_2:5255640-5255659 Msa0392270:intron 35.0%
! TTTAGCTTCACCCTAAATGT+GGG - chr3_2:5255641-5255660 Msa0392270:intron 35.0%
GGAACAAACACAATTTAGTC+CGG - chr3_2:5255683-5255702 Msa0392270:CDS 35.0%
TAAAAAAGAAGTCCCTCATC+TGG + chr3_2:5255842-5255861 None:intergenic 35.0%
AAATGATAAGGAATGGCATG+CGG - chr3_2:5255877-5255896 Msa0392270:five_prime_UTR 35.0%
CAGCACAACACAATACAAAC+TGG + chr3_2:5245123-5245142 None:intergenic 40.0%
GTGTTGAATGAGATCGGATT+CGG + chr3_2:5245285-5245304 None:intergenic 40.0%
! AGTGATAGCGAGAAGAGAAA+CGG + chr3_2:5245316-5245335 None:intergenic 40.0%
GCAAACTCGAAAACATCATC+AGG + chr3_2:5246076-5246095 None:intergenic 40.0%
GAGTTTGCGGAGTTCTTTAA+TGG - chr3_2:5246088-5246107 Msa0392270:intron 40.0%
! CACGTTTTCGTTAACGAGAA+AGG - chr3_2:5246112-5246131 Msa0392270:intron 40.0%
!!! CTTTTAGGGCATGTTTGGAT+TGG - chr3_2:5246229-5246248 Msa0392270:intron 40.0%
TGGACACCTGATTGAATATC+AGG + chr3_2:5246731-5246750 None:intergenic 40.0%
ACTCAACTACTGCTTTATGC+TGG + chr3_2:5246751-5246770 None:intergenic 40.0%
!! GAGGCTTTGAAATGAGTTTG+AGG + chr3_2:5246980-5246999 None:intergenic 40.0%
TCCGAGTGCAGAAATACAAT+TGG - chr3_2:5247010-5247029 Msa0392270:intron 40.0%
!! CAAATGTGTTTTGAGCAAGC+TGG - chr3_2:5247125-5247144 Msa0392270:CDS 40.0%
GGAGGAGAAAATGAGACAAA+TGG + chr3_2:5247178-5247197 None:intergenic 40.0%
! CTCATTTTCTCCTCCTTTCT+AGG - chr3_2:5247183-5247202 Msa0392270:intron 40.0%
! CATTTTCTCCTCCTTTCTAG+GGG - chr3_2:5247185-5247204 Msa0392270:intron 40.0%
TGACGTATATATGCCATCAG+GGG + chr3_2:5247237-5247256 None:intergenic 40.0%
CTGACGTATATATGCCATCA+GGG + chr3_2:5247238-5247257 None:intergenic 40.0%
TCTGACGTATATATGCCATC+AGG + chr3_2:5247239-5247258 None:intergenic 40.0%
GTCCACTGGTAAATGATTCT+GGG - chr3_2:5247277-5247296 Msa0392270:intron 40.0%
GTGTTGAATGAGAGAGAAAG+AGG - chr3_2:5247600-5247619 Msa0392270:CDS 40.0%
TTGTTATCAAGTAGCAGCCA+TGG - chr3_2:5247751-5247770 Msa0392270:CDS 40.0%
!!! TTTTTTCCAGAACACTGCCA+TGG + chr3_2:5247771-5247790 None:intergenic 40.0%
!! AGAATTTTGGCCTTCTGCTA+TGG - chr3_2:5247871-5247890 Msa0392270:intron 40.0%
! TCTGTGATATGGATTGCAGA+TGG + chr3_2:5247901-5247920 None:intergenic 40.0%
GATTATGATCTGTGTACCCA+TGG + chr3_2:5247937-5247956 None:intergenic 40.0%
GTATAGAGAGCTAACAAAGG+GGG + chr3_2:5248219-5248238 None:intergenic 40.0%
! TTTTGTTCCTTCATTGGGTC+TGG - chr3_2:5248240-5248259 Msa0392270:intron 40.0%
AAATTCACCAGACCCAATGA+AGG + chr3_2:5248250-5248269 None:intergenic 40.0%
CTTTAATCTTCGACTCCTGT+TGG - chr3_2:5248358-5248377 Msa0392270:intron 40.0%
AATACTCCACATCTTGTGTC+AGG - chr3_2:5248464-5248483 Msa0392270:intron 40.0%
ATGAAACCTGACACAAGATG+TGG + chr3_2:5248473-5248492 None:intergenic 40.0%
CATCTTGTGTCAGGTTTCAT+CGG - chr3_2:5248473-5248492 Msa0392270:intron 40.0%
ACTGTCTGTGAAATGGTTAG+GGG - chr3_2:5248864-5248883 Msa0392270:intron 40.0%
ATGTACATTCCCTTCTTGAG+TGG + chr3_2:5249539-5249558 None:intergenic 40.0%
AGAAGGGAATGTACATTCAG+TGG - chr3_2:5249543-5249562 Msa0392270:intron 40.0%
GAAGGGAATGTACATTCAGT+GGG - chr3_2:5249544-5249563 Msa0392270:intron 40.0%
!! CATTCAGTGGGTTATGTATG+GGG - chr3_2:5249556-5249575 Msa0392270:intron 40.0%
ATGTACATTCCCTTCTTGAG+TGG + chr3_2:5249539-5249558 None:intergenic 40.0%
AGAAGGGAATGTACATTCAG+TGG - chr3_2:5249543-5249562 Msa0392270:intron 40.0%
GAAGGGAATGTACATTCAGT+GGG - chr3_2:5249544-5249563 Msa0392270:intron 40.0%
!! CATTCAGTGGGTTATGTATG+GGG - chr3_2:5249556-5249575 Msa0392270:intron 40.0%
TGGGTTCAATCAAGTTAGCA+TGG - chr3_2:5250085-5250104 Msa0392270:intron 40.0%
CAATCAAGTTAGCATGGTAG+AGG - chr3_2:5250091-5250110 Msa0392270:intron 40.0%
TGGTTGTCAGTATGTTCAGA+AGG - chr3_2:5250236-5250255 Msa0392270:intron 40.0%
AGACAAATCTGCCTTTACTG+TGG - chr3_2:5250293-5250312 Msa0392270:intron 40.0%
TCATGTGAATATCTCTGGTG+TGG - chr3_2:5250423-5250442 Msa0392270:intron 40.0%
CAGTGAACTTGGCATATACA+AGG + chr3_2:5250500-5250519 None:intergenic 40.0%
TTCCGAGAGTCTACAGAAAT+TGG - chr3_2:5250708-5250727 Msa0392270:CDS 40.0%
CACCAATTTCTGTAGACTCT+CGG + chr3_2:5250713-5250732 None:intergenic 40.0%
TACTAGCACACTCTACTAGT+GGG + chr3_2:5250881-5250900 None:intergenic 40.0%
GTGAGTGCAATTTACCCTTA+AGG + chr3_2:5251205-5251224 None:intergenic 40.0%
TAGCCTCAAAATCAAACGGA+CGG + chr3_2:5251339-5251358 None:intergenic 40.0%
GCTTGTAAAACCTTGAGTCA+TGG + chr3_2:5251476-5251495 None:intergenic 40.0%
TTGTTGAGACTCTCGTTGTT+TGG - chr3_2:5251663-5251682 Msa0392270:intron 40.0%
AACGAAGTAAGTGACGTATG+AGG - chr3_2:5251773-5251792 Msa0392270:intron 40.0%
GTGACGTATGAGGAGAATTA+AGG - chr3_2:5251783-5251802 Msa0392270:intron 40.0%
GTGACATATTAGTAGACCTC+AGG - chr3_2:5251888-5251907 Msa0392270:intron 40.0%
GACATATTAGTAGACCTCAG+GGG - chr3_2:5251890-5251909 Msa0392270:intron 40.0%
GAGCGAGGTAACAACATTTA+AGG + chr3_2:5251938-5251957 None:intergenic 40.0%
! TATACAGTGCATGGCATTGA+AGG - chr3_2:5252332-5252351 Msa0392270:intron 40.0%
! TCCTTCTGAAAGGAAAACAG+CGG - chr3_2:5252405-5252424 Msa0392270:intron 40.0%
AAATGGACATGAGCAAGGTA+CGG + chr3_2:5252482-5252501 None:intergenic 40.0%
AAGTGAAATGGACATGAGCA+AGG + chr3_2:5252487-5252506 None:intergenic 40.0%
ACTCCAACGTTAGATAGAAC+GGG + chr3_2:5252600-5252619 None:intergenic 40.0%
TAAAGGACCAAAGTGGTTGA+CGG + chr3_2:5252964-5252983 None:intergenic 40.0%
CTGTTTAACCATACCTTCAG+TGG + chr3_2:5253257-5253276 None:intergenic 40.0%
ATGTCTCTAGTCATGATGCT+GGG - chr3_2:5253494-5253513 Msa0392270:intron 40.0%
AGGGGAATCTAAAAGGGATT+TGG - chr3_2:5253531-5253550 Msa0392270:intron 40.0%
!! GATTTTCATGGTTCGGGTAT+TGG - chr3_2:5253574-5253593 Msa0392270:intron 40.0%
! GTCATACCTTCAACTGATTC+AGG + chr3_2:5253736-5253755 None:intergenic 40.0%
CCCTATATAGTGAAGGATGA+TGG - chr3_2:5254123-5254142 Msa0392270:intron 40.0%
TGTTGGGAATAGTACTCATG+AGG - chr3_2:5254185-5254204 Msa0392270:intron 40.0%
TGGGTTCAGAAATCATCTTC+AGG - chr3_2:5254293-5254312 Msa0392270:intron 40.0%
TGTAAGCACTCTTAAAGCAC+TGG + chr3_2:5255073-5255092 None:intergenic 40.0%
ATTCCTGCTACATTGAGCTA+GGG - chr3_2:5255156-5255175 Msa0392270:intron 40.0%
ATTGAGCTAGGGATCTGTTT+AGG - chr3_2:5255167-5255186 Msa0392270:intron 40.0%
ATGAGCCTAAGCTACTTGTA+AGG - chr3_2:5255218-5255237 Msa0392270:intron 40.0%
ACAGACCTTACAAGTAGCTT+AGG + chr3_2:5255226-5255245 None:intergenic 40.0%
GGTAAATAGTCATGTCAAGG+AGG + chr3_2:5255413-5255432 None:intergenic 40.0%
GAAAAGACACGAACCATACA+AGG + chr3_2:5255477-5255496 None:intergenic 40.0%
TCGAGTAGGGTTTGTATGAA+AGG - chr3_2:5255724-5255743 Msa0392270:CDS 40.0%
AATGATAAGGAATGGCATGC+GGG - chr3_2:5255878-5255897 Msa0392270:five_prime_UTR 40.0%
! AGATCGGATTCGGTTAGAGA+TGG + chr3_2:5245275-5245294 None:intergenic 45.0%
GTTTCTCTTCTCGCTATCAC+TGG - chr3_2:5245315-5245334 Msa0392270:three_prime_UTR 45.0%
GTGAGAGAAGAAGAAGAACC+TGG + chr3_2:5245363-5245382 None:intergenic 45.0%
!!! CGTAGCTTTTAGGGCATGTT+TGG - chr3_2:5246224-5246243 Msa0392270:intron 45.0%
TCCAAAGCCGAGTACCAAAA+AGG - chr3_2:5246790-5246809 Msa0392270:intron 45.0%
!! TCCTTTTTGGTACTCGGCTT+TGG + chr3_2:5246794-5246813 None:intergenic 45.0%
AAGCCGAGTACCAAAAAGGA+TGG - chr3_2:5246794-5246813 Msa0392270:intron 45.0%
TTGAGGAACTCGAGATAGTC+TGG + chr3_2:5246963-5246982 None:intergenic 45.0%
GGTCCACTGGTAAATGATTC+TGG - chr3_2:5247276-5247295 Msa0392270:intron 45.0%
GTCCCAGAATCATTTACCAG+TGG + chr3_2:5247282-5247301 None:intergenic 45.0%
! CATCCTTCACAGATTGGTCA+TGG + chr3_2:5247807-5247826 None:intergenic 45.0%
CATGACCAATCTGTGAAGGA+TGG - chr3_2:5247805-5247824 Msa0392270:intron 45.0%
! TGGCAGCGCCATGATTTTTA+TGG - chr3_2:5247825-5247844 Msa0392270:intron 45.0%
AGATGGCAAACCATAGCAGA+AGG + chr3_2:5247884-5247903 None:intergenic 45.0%
TGGGCTGTGAATCTGTGATA+TGG + chr3_2:5247912-5247931 None:intergenic 45.0%
AGTTAAGATGGTCTCCTGCT+TGG - chr3_2:5248425-5248444 Msa0392270:intron 45.0%
GTTAAGATGGTCTCCTGCTT+GGG - chr3_2:5248426-5248445 Msa0392270:intron 45.0%
ATGTCAGCATATACCCAAGC+AGG + chr3_2:5248442-5248461 None:intergenic 45.0%
TCTTCTGCCAACTCTTGTTG+CGG + chr3_2:5248499-5248518 None:intergenic 45.0%
ACGGGGATCCGAAAAGAAAA+AGG - chr3_2:5248563-5248582 Msa0392270:intron 45.0%
CAAAGGAGGCAATAACAGCA+TGG + chr3_2:5248739-5248758 None:intergenic 45.0%
CTGTCTGTGAAATGGTTAGG+GGG - chr3_2:5248865-5248884 Msa0392270:intron 45.0%
TGATGCCATAACAGCCACTA+TGG - chr3_2:5248909-5248928 Msa0392270:intron 45.0%
ATAGTCAGTAACGGCCATAG+TGG + chr3_2:5248926-5248945 None:intergenic 45.0%
! ATGGCCGTTACTGACTATAG+AGG - chr3_2:5248928-5248947 Msa0392270:intron 45.0%
ACACCTAAAGAGGGCAAGAA+TGG - chr3_2:5249398-5249417 Msa0392270:intron 45.0%
CACCTAAAGAGGGCAAGAAT+GGG - chr3_2:5249399-5249418 Msa0392270:intron 45.0%
! ATTTTTGTGTGCAGAGCCAG+AGG + chr3_2:5249491-5249510 None:intergenic 45.0%
GCTTGAAGTCCACTCAAGAA+GGG - chr3_2:5249527-5249546 Msa0392270:intron 45.0%
GCTTGAAGTCCACTCAAGAA+GGG - chr3_2:5249527-5249546 Msa0392270:intron 45.0%
ATAGACTGGAAAGGAGGGAA+TGG + chr3_2:5249891-5249910 None:intergenic 45.0%
!! AGTCACTGTTTGGCTTTGCT+TGG + chr3_2:5249957-5249976 None:intergenic 45.0%
CATGACACACATGCGAGATT+TGG - chr3_2:5250029-5250048 Msa0392270:intron 45.0%
CGAGAGTCTACAGAAATTGG+TGG - chr3_2:5250711-5250730 Msa0392270:CDS 45.0%
ACTAGCACACTCTACTAGTG+GGG + chr3_2:5250880-5250899 None:intergenic 45.0%
GTACTAGCACACTCTACTAG+TGG + chr3_2:5250882-5250901 None:intergenic 45.0%
ATATGAGGAGAAACTGGGGA+TGG - chr3_2:5251018-5251037 Msa0392270:intron 45.0%
TATGAGGAGAAACTGGGGAT+GGG - chr3_2:5251019-5251038 Msa0392270:intron 45.0%
GACTGAATCCTTGATTCCAG+AGG + chr3_2:5251133-5251152 None:intergenic 45.0%
AAAATCAAACGGACGGACGT+TGG + chr3_2:5251332-5251351 None:intergenic 45.0%
CACACTTTCTCCATGACTCA+AGG - chr3_2:5251463-5251482 Msa0392270:intron 45.0%
TTATTCTGGCAGTCCAGTCA+TGG - chr3_2:5251698-5251717 Msa0392270:intron 45.0%
! ACGGTGTTAGAATTCAAGGG+AGG - chr3_2:5251833-5251852 Msa0392270:intron 45.0%
ATATTAGTAGACCTCAGGGG+AGG - chr3_2:5251893-5251912 Msa0392270:intron 45.0%
AATTACATTCACCTCCCCTG+AGG + chr3_2:5251907-5251926 None:intergenic 45.0%
TCTTCAGTATAGTTGGAGCG+AGG + chr3_2:5251953-5251972 None:intergenic 45.0%
AGTCAGTGGTATTCCAGAGA+CGG + chr3_2:5252360-5252379 None:intergenic 45.0%
!! ATACCACTGACTTCTGACTC+AGG - chr3_2:5252368-5252387 Msa0392270:intron 45.0%
TTTCCTGAGTCAGAAGTCAG+TGG + chr3_2:5252374-5252393 None:intergenic 45.0%
!! GCTGTTTTCCTTTCAGAAGG+AGG + chr3_2:5252406-5252425 None:intergenic 45.0%
! CCTTCTGAAAGGAAAACAGC+GGG - chr3_2:5252406-5252425 Msa0392270:intron 45.0%
AATGGACATGAGCAAGGTAC+GGG + chr3_2:5252481-5252500 None:intergenic 45.0%
TCTCCCGTTCTATCTAACGT+TGG - chr3_2:5252594-5252613 Msa0392270:intron 45.0%
TGTTGTCCTTCCCTGAAAGT+TGG - chr3_2:5252672-5252691 Msa0392270:intron 45.0%
! TCCTTCCCTGAAAGTTGGTT+TGG - chr3_2:5252677-5252696 Msa0392270:intron 45.0%
TCCAAACCAACTTTCAGGGA+AGG + chr3_2:5252681-5252700 None:intergenic 45.0%
CTGCTCCAAACCAACTTTCA+GGG + chr3_2:5252685-5252704 None:intergenic 45.0%
ACTGCTCCAAACCAACTTTC+AGG + chr3_2:5252686-5252705 None:intergenic 45.0%
GTTGACGGAGGAAGAGTTAA+GGG + chr3_2:5252949-5252968 None:intergenic 45.0%
CCTAACGTAAAGGACCAAAG+TGG + chr3_2:5252971-5252990 None:intergenic 45.0%
CCACTTTGGTCCTTTACGTT+AGG - chr3_2:5252968-5252987 Msa0392270:intron 45.0%
GCAGTAGATGTAGACTGACT+CGG + chr3_2:5253391-5253410 None:intergenic 45.0%
!!! GTCCTTTTGGTTCAAGGTCT+GGG - chr3_2:5253461-5253480 Msa0392270:intron 45.0%
AACCCAGACCTTGAACCAAA+AGG + chr3_2:5253466-5253485 None:intergenic 45.0%
CATGTCTCTAGTCATGATGC+TGG - chr3_2:5253493-5253512 Msa0392270:intron 45.0%
CTGGGCATGCTAATTCTGAA+GGG - chr3_2:5253512-5253531 Msa0392270:intron 45.0%
! TGGGCATGCTAATTCTGAAG+GGG - chr3_2:5253513-5253532 Msa0392270:intron 45.0%
GACGTACTAGAAACAAGGAC+AGG - chr3_2:5253611-5253630 Msa0392270:intron 45.0%
GGTGAATTCTCAACTTCTGC+AGG - chr3_2:5253919-5253938 Msa0392270:intron 45.0%
GAATTCTCAACTTCTGCAGG+TGG - chr3_2:5253922-5253941 Msa0392270:intron 45.0%
AGTAGTCCCTCTGTTGAGAA+TGG - chr3_2:5253949-5253968 Msa0392270:intron 45.0%
CACCAACCATTCTCAACAGA+GGG + chr3_2:5253958-5253977 None:intergenic 45.0%
ACACCAACCATTCTCAACAG+AGG + chr3_2:5253959-5253978 None:intergenic 45.0%
ACAGGGCAATTCAAGCAAAG+AGG + chr3_2:5254243-5254262 None:intergenic 45.0%
GAGCTCAACTGACTGTTGAA+TGG - chr3_2:5254526-5254545 Msa0392270:intron 45.0%
CATTCCTGCTACATTGAGCT+AGG - chr3_2:5255155-5255174 Msa0392270:intron 45.0%
TCAATTCTACAGGCTCTGTC+AGG + chr3_2:5255371-5255390 None:intergenic 45.0%
GACAGAGCCTGTAGAATTGA+AGG - chr3_2:5255371-5255390 Msa0392270:intron 45.0%
!!! ATGATTATTATTTTTTAATA+AGG - chr3_2:5246931-5246950 Msa0392270:intron 5.0%
! GAAGAAGATGAAGGCGCGTT+CGG - chr3_2:5245211-5245230 Msa0392270:three_prime_UTR 50.0%
! ATGAAGGCGCGTTCGGAAAA+GGG - chr3_2:5245218-5245237 Msa0392270:three_prime_UTR 50.0%
! TCGGATTCGGTTAGAGATGG+TGG + chr3_2:5245272-5245291 None:intergenic 50.0%
!!! CACTGGTTCGTTTTCCGTTC+CGG - chr3_2:5245332-5245351 Msa0392270:three_prime_UTR 50.0%
!! GAAGAAGAACCTGGTGTTGC+CGG + chr3_2:5245354-5245373 None:intergenic 50.0%
!! CGGCCATCCTTTTTGGTACT+CGG + chr3_2:5246800-5246819 None:intergenic 50.0%
ACCAAAAAGGATGGCCGTGA+AGG - chr3_2:5246803-5246822 Msa0392270:intron 50.0%
CCAAAAAGGATGGCCGTGAA+GGG - chr3_2:5246804-5246823 Msa0392270:intron 50.0%
GCACTCGGAAGATGTTCTTG+AGG + chr3_2:5246999-5247018 None:intergenic 50.0%
AGAAAGGAAGCTGAGCAAGC+TGG - chr3_2:5247035-5247054 Msa0392270:intron 50.0%
TTCCTTGCTAGCCCCTAGAA+AGG + chr3_2:5247199-5247218 None:intergenic 50.0%
ACCTATTGTCACACCCCTGA+TGG - chr3_2:5247221-5247240 Msa0392270:intron 50.0%
! CCTTCACAGATTGGTCATGG+CGG + chr3_2:5247804-5247823 None:intergenic 50.0%
AGATTCACAGCCCATGCCAT+GGG - chr3_2:5247918-5247937 Msa0392270:intron 50.0%
GATCTGTGTACCCATGGCAT+GGG + chr3_2:5247931-5247950 None:intergenic 50.0%
TGATCTGTGTACCCATGGCA+TGG + chr3_2:5247932-5247951 None:intergenic 50.0%
AGAGAGCTAACAAAGGGGGA+AGG + chr3_2:5248215-5248234 None:intergenic 50.0%
ATCCCCGTCTGGTATTACTG+GGG + chr3_2:5248551-5248570 None:intergenic 50.0%
GATCCCCGTCTGGTATTACT+GGG + chr3_2:5248552-5248571 None:intergenic 50.0%
! TTTCTTTTCGGATCCCCGTC+TGG + chr3_2:5248562-5248581 None:intergenic 50.0%
AACGGCCATAGTGGCTGTTA+TGG + chr3_2:5248917-5248936 None:intergenic 50.0%
CACCCATTCTTGCCCTCTTT+AGG + chr3_2:5249404-5249423 None:intergenic 50.0%
CCTTAGCTGCAGGTGTTTGT+GGG + chr3_2:5249448-5249467 None:intergenic 50.0%
TCCTTAGCTGCAGGTGTTTG+TGG + chr3_2:5249449-5249468 None:intergenic 50.0%
ACAAACACCTGCAGCTAAGG+AGG - chr3_2:5249448-5249467 Msa0392270:intron 50.0%
CAAACACCTGCAGCTAAGGA+GGG - chr3_2:5249449-5249468 Msa0392270:intron 50.0%
AAACACCTGCAGCTAAGGAG+GGG - chr3_2:5249450-5249469 Msa0392270:intron 50.0%
GGCTTGAAGTCCACTCAAGA+AGG - chr3_2:5249526-5249545 Msa0392270:intron 50.0%
GGTTATGTATGGGGCCAAGT+GGG - chr3_2:5249565-5249584 Msa0392270:intron 50.0%
GGCTTGAAGTCCACTCAAGA+AGG - chr3_2:5249526-5249545 Msa0392270:intron 50.0%
GGTTATGTATGGGGCCAAGT+GGG - chr3_2:5249565-5249584 Msa0392270:intron 50.0%
CAAGTTAGCATGGTAGAGGG+AGG - chr3_2:5250095-5250114 Msa0392270:intron 50.0%
ATGAGGAGAAACTGGGGATG+GGG - chr3_2:5251020-5251039 Msa0392270:intron 50.0%
GGGGAGTCATTCATTCTCAG+AGG - chr3_2:5251039-5251058 Msa0392270:intron 50.0%
!! GATGGCTTCCTCTGGAATCA+AGG - chr3_2:5251122-5251141 Msa0392270:intron 50.0%
!! CGTCCGTCCGTTTGATTTTG+AGG - chr3_2:5251333-5251352 Msa0392270:intron 50.0%
!! CCCGCTGTTTTCCTTTCAGA+AGG + chr3_2:5252409-5252428 None:intergenic 50.0%
CAGCGGGAAATTCCCAAAGT+AGG - chr3_2:5252422-5252441 Msa0392270:intron 50.0%
ATGAGCAAGGTACGGGTGAA+GGG + chr3_2:5252474-5252493 None:intergenic 50.0%
GGTTGACGGAGGAAGAGTTA+AGG + chr3_2:5252950-5252969 None:intergenic 50.0%
TCTTCCTCCGTCAACCACTT+TGG - chr3_2:5252954-5252973 Msa0392270:intron 50.0%
TGGAACTTTCAGGCCACTGA+AGG - chr3_2:5253241-5253260 Msa0392270:intron 50.0%
CTTTCAGGCCACTGAAGGTA+TGG - chr3_2:5253246-5253265 Msa0392270:intron 50.0%
AAGCCGGTGGAAGATTGATC+AGG - chr3_2:5253338-5253357 Msa0392270:intron 50.0%
GCTCCTGATCAATCTTCCAC+CGG + chr3_2:5253344-5253363 None:intergenic 50.0%
CTTGAACCAAAAGGACGAGG+TGG + chr3_2:5253457-5253476 None:intergenic 50.0%
!!! CACCTCGTCCTTTTGGTTCA+AGG - chr3_2:5253455-5253474 Msa0392270:intron 50.0%
GACCTTGAACCAAAAGGACG+AGG + chr3_2:5253460-5253479 None:intergenic 50.0%
!!! CGTCCTTTTGGTTCAAGGTC+TGG - chr3_2:5253460-5253479 Msa0392270:intron 50.0%
GCTGGGCATGCTAATTCTGA+AGG - chr3_2:5253511-5253530 Msa0392270:intron 50.0%
TGAGCTCTCATCATCCTCAC+TGG - chr3_2:5253690-5253709 Msa0392270:intron 50.0%
GCTTATTCGGGAAACAGGAG+TGG - chr3_2:5253898-5253917 Msa0392270:intron 50.0%
GTCCCTCTGTTGAGAATGGT+TGG - chr3_2:5253953-5253972 Msa0392270:intron 50.0%
TGGGGCTCCCTATATAGTGA+AGG - chr3_2:5254116-5254135 Msa0392270:intron 50.0%
GTGCAGTCAGTTCGAGTGAA+GGG - chr3_2:5254145-5254164 Msa0392270:intron 50.0%
GATCCCTAGCTCAATGTAGC+AGG + chr3_2:5255162-5255181 None:intergenic 50.0%
ACATCATCCGCGTCCAATTC+AGG - chr3_2:5255190-5255209 Msa0392270:intron 50.0%
ATGTCGACCTGAATTGGACG+CGG + chr3_2:5255200-5255219 None:intergenic 50.0%
AGGCTCATGTCGACCTGAAT+TGG + chr3_2:5255206-5255225 None:intergenic 50.0%
AAGGGTCTAGCCCATCAACA+TGG + chr3_2:5255458-5255477 None:intergenic 50.0%
!! TGATGGGCTAGACCCTTGTA+TGG - chr3_2:5255461-5255480 Msa0392270:intron 50.0%
ACCCTAAATGTGGGTTCCGT+GGG - chr3_2:5255650-5255669 Msa0392270:intron 50.0%
ACCCACGGAACCCACATTTA+GGG + chr3_2:5255654-5255673 None:intergenic 50.0%
AACCCACGGAACCCACATTT+AGG + chr3_2:5255655-5255674 None:intergenic 50.0%
! TGTTCCGCGTTTAGAACCCA+CGG + chr3_2:5255669-5255688 None:intergenic 50.0%
TCTTCGGTACAGCCAGATGA+GGG - chr3_2:5255827-5255846 Msa0392270:five_prime_UTR 50.0%
! GATGAAGGCGCGTTCGGAAA+AGG - chr3_2:5245217-5245236 Msa0392270:three_prime_UTR 55.0%
! TTTTCCGTTCCGGCAACACC+AGG - chr3_2:5245342-5245361 Msa0392270:three_prime_UTR 55.0%
!! AGAACCTGGTGTTGCCGGAA+CGG + chr3_2:5245349-5245368 None:intergenic 55.0%
!! GGCTTTGGAACACGCTGAGA+AGG + chr3_2:5246779-5246798 None:intergenic 55.0%
! CCCTTCACGGCCATCCTTTT+TGG + chr3_2:5246807-5246826 None:intergenic 55.0%
CTTGCTAGCCCCTAGAAAGG+AGG + chr3_2:5247196-5247215 None:intergenic 55.0%
! CTCCTTTCTAGGGGCTAGCA+AGG - chr3_2:5247194-5247213 Msa0392270:intron 55.0%
! GCCATCAGGGGTGTGACAAT+AGG + chr3_2:5247225-5247244 None:intergenic 55.0%
! CAGAAGCGTGCTGTTGACAG+TGG - chr3_2:5247255-5247274 Msa0392270:intron 55.0%
TGCTGTTGACAGTGGTCCAC+TGG - chr3_2:5247263-5247282 Msa0392270:intron 55.0%
TAGCAGCCATGGCAGTGTTC+TGG - chr3_2:5247762-5247781 Msa0392270:intron 55.0%
! CACAGATTGGTCATGGCGGA+TGG + chr3_2:5247800-5247819 None:intergenic 55.0%
CCGCCATGACCAATCTGTGA+AGG - chr3_2:5247801-5247820 Msa0392270:intron 55.0%
CGCTGCCATCCTTCACAGAT+TGG + chr3_2:5247813-5247832 None:intergenic 55.0%
CAGATTCACAGCCCATGCCA+TGG - chr3_2:5247917-5247936 Msa0392270:intron 55.0%
TCATCGGCCGCAACAAGAGT+TGG - chr3_2:5248489-5248508 Msa0392270:intron 55.0%
AGAGCCAGAGCTGCTATGCA+AGG - chr3_2:5248516-5248535 Msa0392270:intron 55.0%
CTTGCCTTGCATAGCAGCTC+TGG + chr3_2:5248523-5248542 None:intergenic 55.0%
CTGGCCCCAGTAATACCAGA+CGG - chr3_2:5248544-5248563 Msa0392270:intron 55.0%
TGGCCCCAGTAATACCAGAC+GGG - chr3_2:5248545-5248564 Msa0392270:intron 55.0%
GGATCCCCGTCTGGTATTAC+TGG + chr3_2:5248553-5248572 None:intergenic 55.0%
CCCACAAACACCTGCAGCTA+AGG - chr3_2:5249445-5249464 Msa0392270:intron 55.0%
!! GACTGGCCAGTTTTAGCCTC+TGG - chr3_2:5249472-5249491 Msa0392270:intron 55.0%
GCAGAGCCAGAGGCTAAAAC+TGG + chr3_2:5249481-5249500 None:intergenic 55.0%
GGGTTATGTATGGGGCCAAG+TGG - chr3_2:5249564-5249583 Msa0392270:intron 55.0%
ATGTATGGGGCCAAGTGGGT+TGG - chr3_2:5249569-5249588 Msa0392270:intron 55.0%
! TGTATGGGGCCAAGTGGGTT+GGG - chr3_2:5249570-5249589 Msa0392270:intron 55.0%
GGGTTATGTATGGGGCCAAG+TGG - chr3_2:5249564-5249583 Msa0392270:intron 55.0%
ATGTATGGGGCCAAGTGGGT+TGG - chr3_2:5249569-5249588 Msa0392270:intron 55.0%
! TGTATGGGGCCAAGTGGGTT+GGG - chr3_2:5249570-5249589 Msa0392270:intron 55.0%
AAGAATGGTCCTCACGCCTG+GGG + chr3_2:5250320-5250339 None:intergenic 55.0%
GAAGAATGGTCCTCACGCCT+GGG + chr3_2:5250321-5250340 None:intergenic 55.0%
AGAAGAATGGTCCTCACGCC+TGG + chr3_2:5250322-5250341 None:intergenic 55.0%
GGACGTTGGTCAGAAGGGAT+GGG + chr3_2:5251318-5251337 None:intergenic 55.0%
TTCTGGCAGTCCAGTCATGG+AGG - chr3_2:5251701-5251720 Msa0392270:intron 55.0%
GTCCAGTCATGGAGGAGAGT+TGG - chr3_2:5251709-5251728 Msa0392270:intron 55.0%
TGCCAACTCTCCTCCATGAC+TGG + chr3_2:5251714-5251733 None:intergenic 55.0%
! GGCATTGAAGGTTCCGTCTC+TGG - chr3_2:5252344-5252363 Msa0392270:intron 55.0%
CATGAGCAAGGTACGGGTGA+AGG + chr3_2:5252475-5252494 None:intergenic 55.0%
AGGACCAAAGTGGTTGACGG+AGG + chr3_2:5252961-5252980 None:intergenic 55.0%
! CAGAACCAAAGGCGTGAAGC+CGG - chr3_2:5253322-5253341 Msa0392270:intron 55.0%
AACAAGGACAGGCCTGATCG+TGG - chr3_2:5253622-5253641 Msa0392270:intron 55.0%
ACAGGCCTGATCGTGGTGTT+TGG - chr3_2:5253629-5253648 Msa0392270:intron 55.0%
CAGGCCTGATCGTGGTGTTT+GGG - chr3_2:5253630-5253649 Msa0392270:intron 55.0%
GAAGAATCGGAACGGCGAAG+AGG + chr3_2:5253658-5253677 None:intergenic 55.0%
GGTGCAGTCAGTTCGAGTGA+AGG - chr3_2:5254144-5254163 Msa0392270:intron 55.0%
AGGCTCTGTCAGGCAACAAC+TGG + chr3_2:5255361-5255380 None:intergenic 55.0%
CACCCTAAATGTGGGTTCCG+TGG - chr3_2:5255649-5255668 Msa0392270:intron 55.0%
!! GGTTCCGTGGGTTCTAAACG+CGG - chr3_2:5255662-5255681 Msa0392270:intron 55.0%
GTCTTCGGTACAGCCAGATG+AGG - chr3_2:5255826-5255845 Msa0392270:five_prime_UTR 55.0%
GCTGCTATGCAAGGCAAGCC+TGG - chr3_2:5248525-5248544 Msa0392270:intron 60.0%
CGTCTGGTATTACTGGGGCC+AGG + chr3_2:5248546-5248565 None:intergenic 60.0%
GGCCCCAGTAATACCAGACG+GGG - chr3_2:5248546-5248565 Msa0392270:intron 60.0%
AGACCACAGCCCAACCCACT+TGG + chr3_2:5249582-5249601 None:intergenic 60.0%
AGACCACAGCCCAACCCACT+TGG + chr3_2:5249582-5249601 None:intergenic 60.0%
CTGCCTTTACTGTGGTCCCC+AGG - chr3_2:5250301-5250320 Msa0392270:intron 60.0%
ACGCCTGGGGACCACAGTAA+AGG + chr3_2:5250307-5250326 None:intergenic 60.0%
CGGACGTTGGTCAGAAGGGA+TGG + chr3_2:5251319-5251338 None:intergenic 60.0%
CGGACGGACGTTGGTCAGAA+GGG + chr3_2:5251323-5251342 None:intergenic 60.0%
ACGGACGGACGTTGGTCAGA+AGG + chr3_2:5251324-5251343 None:intergenic 60.0%
! AACCAAAGGCGTGAAGCCGG+TGG - chr3_2:5253325-5253344 Msa0392270:intron 60.0%
!! TTCCACCGGCTTCACGCCTT+TGG + chr3_2:5253330-5253349 None:intergenic 60.0%
! AGGCGTCCACCTCGTCCTTT+TGG - chr3_2:5253448-5253467 Msa0392270:intron 60.0%
GGTGCCCAAACACCACGATC+AGG + chr3_2:5253637-5253656 None:intergenic 60.0%
TGGTGCAGACTGTGCCAGTG+AGG + chr3_2:5253707-5253726 None:intergenic 60.0%
CCAGTCCCCTCCTTAGCTGC+AGG + chr3_2:5249458-5249477 None:intergenic 65.0%
CCTGCAGCTAAGGAGGGGAC+TGG - chr3_2:5249455-5249474 Msa0392270:intron 65.0%
TACTGTGGTCCCCAGGCGTG+AGG - chr3_2:5250308-5250327 Msa0392270:intron 65.0%
!! GGGCCAAGTGGGTTGGGCTG+TGG - chr3_2:5249576-5249595 Msa0392270:intron 70.0%
!! GGGCCAAGTGGGTTGGGCTG+TGG - chr3_2:5249576-5249595 Msa0392270:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 5245119 5255910 5245119 ID=Msa0392270;Name=Msa0392270
chr3_2 mRNA 5245119 5255910 5245119 ID=Msa0392270-mRNA-1;Parent=Msa0392270;Name=Msa0392270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=99|1|1|1|0.84|0.78|14|706|541
chr3_2 exon 5245119 5245680 5245119 ID=Msa0392270-mRNA-1:exon:1288;Parent=Msa0392270-mRNA-1
chr3_2 exon 5245790 5245923 5245790 ID=Msa0392270-mRNA-1:exon:1287;Parent=Msa0392270-mRNA-1
chr3_2 exon 5246697 5246745 5246697 ID=Msa0392270-mRNA-1:exon:1286;Parent=Msa0392270-mRNA-1
chr3_2 exon 5246823 5246938 5246823 ID=Msa0392270-mRNA-1:exon:1285;Parent=Msa0392270-mRNA-1
chr3_2 exon 5247059 5247148 5247059 ID=Msa0392270-mRNA-1:exon:1284;Parent=Msa0392270-mRNA-1
chr3_2 exon 5247281 5247776 5247281 ID=Msa0392270-mRNA-1:exon:1283;Parent=Msa0392270-mRNA-1
chr3_2 exon 5248590 5248714 5248590 ID=Msa0392270-mRNA-1:exon:1282;Parent=Msa0392270-mRNA-1
chr3_2 exon 5250651 5250783 5250651 ID=Msa0392270-mRNA-1:exon:1281;Parent=Msa0392270-mRNA-1
chr3_2 exon 5252445 5252543 5252445 ID=Msa0392270-mRNA-1:exon:1280;Parent=Msa0392270-mRNA-1
chr3_2 exon 5253745 5253824 5253745 ID=Msa0392270-mRNA-1:exon:1279;Parent=Msa0392270-mRNA-1
chr3_2 exon 5253973 5254071 5253973 ID=Msa0392270-mRNA-1:exon:1278;Parent=Msa0392270-mRNA-1
chr3_2 exon 5254190 5254285 5254190 ID=Msa0392270-mRNA-1:exon:1277;Parent=Msa0392270-mRNA-1
chr3_2 exon 5254896 5255002 5254896 ID=Msa0392270-mRNA-1:exon:1276;Parent=Msa0392270-mRNA-1
chr3_2 exon 5255666 5255910 5255666 ID=Msa0392270-mRNA-1:exon:1275;Parent=Msa0392270-mRNA-1
chr3_2 five_prime_UTR 5255812 5255910 5255812 ID=Msa0392270-mRNA-1:five_prime_utr;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5255666 5255811 5255666 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5254896 5255002 5254896 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5254190 5254285 5254190 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5253973 5254071 5253973 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5253745 5253824 5253745 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5252445 5252543 5252445 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5250651 5250783 5250651 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5248590 5248714 5248590 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5247281 5247776 5247281 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5247059 5247148 5247059 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5246823 5246938 5246823 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 CDS 5246707 5246745 5246707 ID=Msa0392270-mRNA-1:cds;Parent=Msa0392270-mRNA-1
chr3_2 three_prime_UTR 5246697 5246706 5246697 ID=Msa0392270-mRNA-1:three_prime_utr;Parent=Msa0392270-mRNA-1
chr3_2 three_prime_UTR 5245790 5245923 5245790 ID=Msa0392270-mRNA-1:three_prime_utr;Parent=Msa0392270-mRNA-1
chr3_2 three_prime_UTR 5245119 5245680 5245119 ID=Msa0392270-mRNA-1:three_prime_utr;Parent=Msa0392270-mRNA-1
Gene Sequence

>Msa0392270

ATGAAGGCGCGTTCGGAAAAGGGAAGAACGAAAGTAGTGATACGGCATTTACCACCATCTCTAACCGAATCCGATCTCATTCAACACATCGATAACCGTTTCTCTTCTCGCTATCACTGGTTCGTTTTCCGTTCCGGCAACACCAGTTATAGGAATCAAAAGTATGCGAGAGCGTATCTAGACTTCAATTCACCTGATGATGTTTTCGAGTTTGCGGAGTTCTTTAATGGACACGTTTTCGTTAACGAGAAAGGTGTCCAGCATAAAGCAGTAGTTGAGTATGCACCTTCTCAGCGTGTTCCAAAGCCGAGTACCAAAAAGGATGGCCGTGAAGGGACTATATATAAAGATCCAGACTATCTCGAGTTCCTCAAACTCATTTCAAAGCCTCAAGAACATCTTCCGAGTGCAGAAATACAATTGGAAAGAAAGGAAGCTGAGCAAGCTGGGGCTAGCAAGGAAGCACCTATTGTCACACCCCTGATGGCATATATACGTCAGAAGCGTGCTGTTGACAGTGGTCCACTGGTTTCATCGGCCGCAACAAGAGTTGGCAGAAGAGCCAGAGCTGCTATGCAAGGCAAGCCTGGCCCCAGTAATACCAGACGGGGATCCGAAAAGAAAAAGTATGTTCAGAAGGACAATGTCAAGAATGCTAATCGGAAAGATTTGAAAGACAAATCTGCCTTTACTGTGGTCCCCAGGCGTGAGGACCATTCTTCTGAATCAAGTATAAAAGGAGTTTATGAAATTGATTCTTCGCATGTGATTGATGAATATACAGTGCATGGCATTGAAGGTTCCGTCTCTGGAATACCACTGACTTCTGACTCAGGAAAGAAAAAGATCCTCCTTCTGAAAGGAAAACAGCGGGAAATTCCCAAAGCCACTGAAGGTATGGTTAAACAGCAAAATGCACAATCTGCAAATTCGCCCATTCCATCTACTTCTAAACAGAACCAAAGGCGTGAAGCCGGTGGAAGATTGATCAGGAGCATACTTCTAAATAATGAATCTCGTCCGAGTCAGTCTACATCTACTGCGCAACATAAGATTCAAATCTTAACTTCTGAGAATGGAAGGCGTCCACCTCGTCCTTTTGGTTCAAGGTCTGGGTTAAGTGATCATGTCTCTAGTCATGATGCTGGGCATGCTAATTCTGAAGGGGAATCTAAAAGGGATTTGGATGAAAAGTTTGTAAGAAGAGATTTTCATGGTTCGGGTATTGGTGATAAAACAGAAAGACGTACTAGAAACAAGGACAGGCCTGATCGTGGTGTTTGGGCACCTCTTCGCCGTTCCGATTCTTCACATTCTAGTAATGAGCTCTCATCATCCTCACTGGCACAGTCTGCACCATCATATCCTGAATCAGTTGAAGGAGAGGTAAAAGAAAATGCTTATTCGGGAAACAGGAGTGGTGAATTCTCAACTTCTGCAGGTGGACGTAGTAGTCCCTCTGTTGAGAATGGTTCACAAAGAATTTTTACTCGTCGTGGGGCTCCCTATATAGTGAAGGATGATGGTGCAGTCAGTTCGAGTGAAGGGAAACTTTCAAAGAAAGGTGTTGGGAATAGTACTCATGAGAAACAAGTTTGGGTTCAGAAATCATCTTCAGGCTCTTAA
Protein sequence

>Msa0392270

MKARSEKGRTKVVIRHLPPSLTESDLIQHIDNRFSSRYHWFVFRSGNTSYRNQKYARAYLDFNSPDDVFEFAEFFNGHVFVNEKGVQHKAVVEYAPSQRVPKPSTKKDGREGTIYKDPDYLEFLKLISKPQEHLPSAEIQLERKEAEQAGASKEAPIVTPLMAYIRQKRAVDSGPLVSSAATRVGRRARAAMQGKPGPSNTRRGSEKKKYVQKDNVKNANRKDLKDKSAFTVVPRREDHSSESSIKGVYEIDSSHVIDEYTVHGIEGSVSGIPLTSDSGKKKILLLKGKQREIPKATEGMVKQQNAQSANSPIPSTSKQNQRREAGGRLIRSILLNNESRPSQSTSTAQHKIQILTSENGRRPPRPFGSRSGLSDHVSSHDAGHANSEGESKRDLDEKFVRRDFHGSGIGDKTERRTRNKDRPDRGVWAPLRRSDSSHSSNELSSSSLAQSAPSYPESVEGEVKENAYSGNRSGEFSTSAGGRSSPSVENGSQRIFTRRGAPYIVKDDGAVSSSEGKLSKKGVGNSTHEKQVWVQKSSSGS*