AlfalfaGEDB | Msa1207790

M. sativa cultivar zhongmu-4 / Msa1207790

KEGG: K01369
GO: GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006624 GO:0006807 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016043 GO:0016485 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0051604 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990019
PFAM: PF01650.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1207790	XP_003608766.2	95.951	494	20	0	10	503	1	494	0.0	956

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1207790	sp\|P49045\|VPE_SOYBN	82.128	470	83	1	34	503	27	495	0.0	835

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0056930	Msa1207790	0.818662	1.743663e-52	-8.615850e-47
Msa0057010	Msa1207790	0.800447	1.435402e-48	-8.615850e-47
Msa0095920	Msa1207790	0.840656	7.626490e-58	-8.615850e-47
Msa0108490	Msa1207790	-0.819354	1.214021e-52	-8.615850e-47
Msa0172740	Msa1207790	0.800247	1.576223e-48	-8.615850e-47
Msa0325690	Msa1207790	0.811512	6.745865e-51	-8.615850e-47
Msa0940130	Msa1207790	0.800857	1.183671e-48	-8.615850e-47
Msa1131880	Msa1207790	0.815253	1.016365e-51	-8.615850e-47
Msa1207790	Msa1207800	0.986679	1.339049e-167	-8.615850e-47
Msa1207790	Msa1257840	0.933469	1.789455e-95	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1207790	MtrunA17_Chr4g0056561	95.951	494	20	0	10	503	1	494	0.0	956
Msa1207790	MtrunA17_Chr3g0135491	56.803	463	195	3	28	486	6	467	0.0	561
Msa1207790	MtrunA17_Chr1g0151801	55.622	498	203	6	16	503	4	493	0.0	535
Msa1207790	MtrunA17_Chr7g0248651	44.770	478	236	4	20	486	9	469	7.39e-145	424
Msa1207790	MtrunA17_Chr7g0246051	52.490	261	113	2	27	287	16	265	3.83e-95	289
Msa1207790	MtrunA17_Chr7g0226421	65.891	129	44	0	65	193	31	159	5.07e-55	181
Msa1207790	MtrunA17_Chr7g0226441	37.500	208	106	3	293	486	1	198	1.02e-41	148
Msa1207790	MtrunA17_Chr7g0246061	34.737	190	109	4	305	488	8	188	2.53e-28	111
Msa1207790	MtrunA17_Chr7g0226431	66.667	63	21	0	225	287	1	63	1.86e-26	102
Msa1207790	MtrunA17_Chr2g0307771	26.794	209	135	4	28	234	18	210	1.28e-17	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1207790	AT1G62710.1	70.172	466	133	3	42	503	23	486	0.0	693
Msa1207790	AT4G32940.1	60.684	468	176	4	43	503	28	494	0.0	551
Msa1207790	AT2G25940.1	59.041	459	182	4	49	503	22	478	0.0	533
Msa1207790	AT3G20210.1	47.113	433	223	3	57	486	35	464	7.44e-132	390
Msa1207790	AT1G08750.3	24.204	314	201	8	69	377	28	309	2.90e-18	87.0
Msa1207790	AT1G08750.2	24.204	314	201	8	69	377	28	309	2.90e-18	87.0
Msa1207790	AT1G08750.1	24.204	314	201	8	69	377	28	309	2.90e-18	87.0

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Find 156 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTCTTCAGTTCTAC+AGG	0.438706	8_1:+65549608	Msa1207790:CDS
AAACATAGGAATCATTTAGA+TGG	0.482034	8_1:+65549546	Msa1207790:CDS
AAACATTGGGTCCCTGTGGA+TGG	0.632954	8_1:-65544274	None:intergenic
AAATCCATAGCATATACATA+CGG	0.584476	8_1:-65548336	None:intergenic
AACACGATGGGCTGTTCTTG+TGG	0.525935	8_1:+65543923	Msa1207790:CDS
AACAGTTTCTACTTTATCTT+AGG	0.305913	8_1:-65550286	None:intergenic
AACATATATTGGAGGCGCAT+AGG	0.498831	8_1:-65550212	None:intergenic
AACCTATACGCTGTCATTCT+TGG	0.266606	8_1:+65547928	Msa1207790:CDS
AACGAGTTGAATCCTAGGCC+TGG	0.520309	8_1:+65544239	Msa1207790:CDS
AACTCCGGGGCCTCCATGAT+CGG	0.509290	8_1:-65548028	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAGGCTCATAAAAACA+GGG	-	chr8_1:65543719-65543738	None:intergenic	30.0%
AAACAAAGGCTCATAAAAAC+AGG	-	chr8_1:65543720-65543739	None:intergenic	30.0%
GAGCTAGAAAAACTGTAAAA+AGG	-	chr8_1:65544550-65544569	None:intergenic	30.0%
GAAAAAGGATTAGAAAAAGC+TGG	-	chr8_1:65544600-65544619	None:intergenic	30.0%
AAATCTCACATAATCCTCTA+AGG	-	chr8_1:65544722-65544741	None:intergenic	30.0%
CAAAAAGAAACGCATTTGAA+TGG	+	chr8_1:65544886-65544905	Msa1207790:intron	30.0%
GCATTTGAGCATTTAATTAG+TGG	+	chr8_1:65544939-65544958	Msa1207790:intron	30.0%
CTATCATTTAATGTATGGGA+CGG	-	chr8_1:65545110-65545129	None:intergenic	30.0%
GTCTAATTCAAGTATCTTTG+AGG	-	chr8_1:65545834-65545853	None:intergenic	30.0%
TTCAAAAATCTCATAAGGGA+GGG	-	chr8_1:65546218-65546237	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	65543531	65550496	65543531	ID=Msa1207790;Name=Msa1207790
chr8_1	mRNA	65543531	65550496	65543531	ID=Msa1207790-mRNA-1;Parent=Msa1207790;Name=Msa1207790-mRNA-1;_AED=0.14;_eAED=0.14;_QI=195\|1\|1\|1\|1\|1\|9\|395\|503
chr8_1	exon	65543531	65543980	65543531	ID=Msa1207790-mRNA-1:exon:21505;Parent=Msa1207790-mRNA-1
chr8_1	exon	65544149	65544313	65544149	ID=Msa1207790-mRNA-1:exon:21506;Parent=Msa1207790-mRNA-1
chr8_1	exon	65547898	65548054	65547898	ID=Msa1207790-mRNA-1:exon:21507;Parent=Msa1207790-mRNA-1
chr8_1	exon	65548322	65548407	65548322	ID=Msa1207790-mRNA-1:exon:21508;Parent=Msa1207790-mRNA-1
chr8_1	exon	65548495	65548694	65548495	ID=Msa1207790-mRNA-1:exon:21509;Parent=Msa1207790-mRNA-1
chr8_1	exon	65549023	65549071	65549023	ID=Msa1207790-mRNA-1:exon:21510;Parent=Msa1207790-mRNA-1
chr8_1	exon	65549177	65549386	65549177	ID=Msa1207790-mRNA-1:exon:21511;Parent=Msa1207790-mRNA-1
chr8_1	exon	65549480	65549686	65549480	ID=Msa1207790-mRNA-1:exon:21512;Parent=Msa1207790-mRNA-1
chr8_1	exon	65549919	65550496	65549919	ID=Msa1207790-mRNA-1:exon:21513;Parent=Msa1207790-mRNA-1
chr8_1	five_prime_UTR	65543531	65543725	65543531	ID=Msa1207790-mRNA-1:five_prime_utr;Parent=Msa1207790-mRNA-1
chr8_1	CDS	65543726	65543980	65543726	ID=Msa1207790-mRNA-1:cds;Parent=Msa1207790-mRNA-1
chr8_1	CDS	65544149	65544313	65544149	ID=Msa1207790-mRNA-1:cds;Parent=Msa1207790-mRNA-1
chr8_1	CDS	65547898	65548054	65547898	ID=Msa1207790-mRNA-1:cds;Parent=Msa1207790-mRNA-1
chr8_1	CDS	65548322	65548407	65548322	ID=Msa1207790-mRNA-1:cds;Parent=Msa1207790-mRNA-1
chr8_1	CDS	65548495	65548694	65548495	ID=Msa1207790-mRNA-1:cds;Parent=Msa1207790-mRNA-1
chr8_1	CDS	65549023	65549071	65549023	ID=Msa1207790-mRNA-1:cds;Parent=Msa1207790-mRNA-1
chr8_1	CDS	65549177	65549386	65549177	ID=Msa1207790-mRNA-1:cds;Parent=Msa1207790-mRNA-1
chr8_1	CDS	65549480	65549686	65549480	ID=Msa1207790-mRNA-1:cds;Parent=Msa1207790-mRNA-1
chr8_1	CDS	65549919	65550101	65549919	ID=Msa1207790-mRNA-1:cds;Parent=Msa1207790-mRNA-1
chr8_1	three_prime_UTR	65550102	65550496	65550102	ID=Msa1207790-mRNA-1:three_prime_utr;Parent=Msa1207790-mRNA-1

Gene Sequence

>Msa1207790

ATGAGCCTTTGTTTTCGTTTTTTCGTTATGGCGGTTCGTAGCAAAAACATGTTTTCCGGTGTCCTATCTTTGTGGCCATGGTTGTTGTTGGTGCTCACTTTGAACGGTTCCGTCGCAAGACCGAACCGTTCAGAGTGGGACTCAGTGATTAGATTGCCGGGTGAGGTGGTGGATGATGCTGAGGTTGATGAAGTTGGAACACGATGGGCTGTTCTTGTGGCTGGTTCAAGTGGTTACGGCAATTACAGACACCAAGCAGATGTGTGCCATGCATACCAGTTGTTGATAAAAGGTGGAGTGAAAGAAGAAAACATCGTTGTGTTTATGTACGATGATATAGCTAACAACGAGTTGAATCCTAGGCCTGGAGTTATCATCAACCATCCACAGGGACCCAATGTTTATGTCGGCGTTCCTAAGGATTACACTGGTGACAACGTGACAGCTGAGAACCTATACGCTGTCATTCTTGGAGACAAGAGTAAAGTAAAGGGTGGAAGTGGCAAGGTCATCAACAGCAAATCCGAAGATAGGATATTTATATATTACTCCGATCATGGAGGCCCCGGAGTTCTTGGGATGCCAAATATGCCGTATGTATATGCTATGGATTTTATTGATGTTTTGAAGAAGAAACATGCATCTGGAGGTTACAAAAAGATGGTTGTATACATTGAAGCTTGTGAAAGTGGTAGCATGTTTGAGGGTGTCATGCCAAAGGATCTTAATGTTTATGTGACAACTGCATCCAATGCACAAGAGAGTAGTTGGGGAACTTACTGTCCTGGAGTGGAACCTGCTCCACCTCCAGAGTACATCACTTGCCTTGGGGATTTGTATAGTGTTGCTTGGATGGAAGACAGCGAGTCACACAATCTAAAAAGGGAAACGGTGAAACAACAATACAAATCGGTTAAAGAACGGACTTCAAATTACAACAACTATGCATTAGGTTCTCATGTGATGCAATATGGTGATACCAACATTACAGATGAAAAGCTATATTTGTACCAAGGTTTTGATCCTGCAACGGTGAACCTTCCTCCTCACAATGACAAACTAGGATCTAAAATGGAAGTTGTAAACCAAAGAGATGCAGAGATTTTATTCATGTGGGAAATGTATAAGAGATTAGATCATCAAACGGAAAAGAAAAGAGAAATCCTTGAGAAGATTGCGGAGACGGTGAAACATAGGAATCATTTAGATGGTAGCGTGGAATTGATTGGAGTTTTACTGTTTGGTCCAACAAAAGGTTCTTCAGTTCTACAGGCTCTTAGAGAACCTGGTCTACCTCTTGTTGATGATTGGGAATGCTTAAAATCAAGGGTTCGGTTGTTTGAAACTCACTGTGGGTCACTGACACAGTATGGGATGAAACACATGCGAGCATTTGCGAACATTTGCAACAGCGGTGTTTCTGAGGATTCTATGGAGAAGGCATGTATAGCAGCATGTGGTGGGTATAATGTAGAGCTATTACATCCATCAAACACAGGTTATAGTGCTTAA

Protein sequence

>Msa1207790

MSLCFRFFVMAVRSKNMFSGVLSLWPWLLLVLTLNGSVARPNRSEWDSVIRLPGEVVDDAEVDEVGTRWAVLVAGSSGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIANNELNPRPGVIINHPQGPNVYVGVPKDYTGDNVTAENLYAVILGDKSKVKGGSGKVINSKSEDRIFIYYSDHGGPGVLGMPNMPYVYAMDFIDVLKKKHASGGYKKMVVYIEACESGSMFEGVMPKDLNVYVTTASNAQESSWGTYCPGVEPAPPPEYITCLGDLYSVAWMEDSESHNLKRETVKQQYKSVKERTSNYNNYALGSHVMQYGDTNITDEKLYLYQGFDPATVNLPPHNDKLGSKMEVVNQRDAEILFMWEMYKRLDHQTEKKREILEKIAETVKHRNHLDGSVELIGVLLFGPTKGSSVLQALREPGLPLVDDWECLKSRVRLFETHCGSLTQYGMKHMRAFANICNSGVSEDSMEKACIAACGGYNVELLHPSNTGYSA*