Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207800 | sp|P49045|VPE_SOYBN | 79.189 | 370 | 67 | 1 | 2 | 361 | 126 | 495 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207800 | G7JK51 | 94.231 | 364 | 11 | 1 | 8 | 361 | 131 | 494 | 0.0 | 709 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056930 | Msa1207800 | 0.831968 | 1.235281e-55 | -8.615850e-47 |
| Msa0057010 | Msa1207800 | 0.800845 | 1.190701e-48 | -8.615850e-47 |
| Msa0095920 | Msa1207800 | 0.819501 | 1.123419e-52 | -8.615850e-47 |
| Msa0108490 | Msa1207800 | -0.811881 | 5.607464e-51 | -8.615850e-47 |
| Msa0325690 | Msa1207800 | 0.814593 | 1.423776e-51 | -8.615850e-47 |
| Msa1207790 | Msa1207800 | 0.986679 | 1.339049e-167 | -8.615850e-47 |
| Msa1207800 | Msa1257750 | 0.800219 | 1.597100e-48 | -8.615850e-47 |
| Msa1207800 | Msa1257840 | 0.921590 | 2.943056e-88 | -8.615850e-47 |
| Msa1207800 | Msa1329130 | 0.967364 | 3.556959e-127 | -8.615850e-47 |
| Msa1207800 | Msa1329210 | 0.970975 | 1.933174e-132 | -8.615850e-47 |
| Msa1207800 | Msa1412370 | 0.820859 | 5.489447e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207800 | MtrunA17_Chr4g0056561 | 94.231 | 364 | 11 | 1 | 8 | 361 | 131 | 494 | 0.0 | 709 |
| Msa1207800 | MtrunA17_Chr3g0135491 | 54.885 | 348 | 145 | 3 | 8 | 344 | 121 | 467 | 5.96e-139 | 404 |
| Msa1207800 | MtrunA17_Chr1g0151801 | 53.951 | 367 | 153 | 4 | 8 | 361 | 130 | 493 | 1.02e-130 | 383 |
| Msa1207800 | MtrunA17_Chr7g0248651 | 40.782 | 358 | 184 | 4 | 8 | 344 | 119 | 469 | 8.45e-89 | 275 |
| Msa1207800 | MtrunA17_Chr7g0246051 | 54.054 | 148 | 68 | 0 | 8 | 155 | 118 | 265 | 2.09e-54 | 180 |
| Msa1207800 | MtrunA17_Chr7g0226441 | 34.615 | 208 | 102 | 4 | 161 | 344 | 1 | 198 | 1.62e-33 | 123 |
| Msa1207800 | MtrunA17_Chr7g0226431 | 66.667 | 63 | 21 | 0 | 93 | 155 | 1 | 63 | 1.30e-25 | 98.6 |
| Msa1207800 | MtrunA17_Chr7g0246061 | 31.579 | 190 | 105 | 5 | 173 | 346 | 8 | 188 | 8.06e-21 | 89.0 |
| Msa1207800 | MtrunA17_Chr7g0226421 | 53.704 | 54 | 25 | 0 | 8 | 61 | 106 | 159 | 3.32e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207800 | AT1G62710.1 | 67.486 | 366 | 105 | 3 | 8 | 361 | 123 | 486 | 0.0 | 519 |
| Msa1207800 | AT4G32940.1 | 56.164 | 365 | 148 | 3 | 8 | 361 | 131 | 494 | 1.71e-134 | 393 |
| Msa1207800 | AT2G25940.1 | 53.151 | 365 | 158 | 4 | 8 | 361 | 116 | 478 | 1.34e-127 | 375 |
| Msa1207800 | AT3G20210.1 | 40.000 | 350 | 190 | 5 | 8 | 340 | 118 | 464 | 1.78e-76 | 243 |
Find 103 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATACATACGGCATATT+TGG | 0.217041 | 8_1:-65568411 | None:intergenic |
| AAGACAAATTAAATTAAATT+AGG | 0.218095 | 8_1:+65570537 | Msa1207800:three_prime_UTR |
| GCGAGTCGCACAATCTAAAA+AGG | 0.250061 | 8_1:+65569106 | Msa1207800:intron |
| AACCTATACGCTGTCATTCT+TGG | 0.266606 | 8_1:+65568012 | Msa1207800:CDS |
| TGACAAACTAGGATCTAAAA+TGG | 0.296605 | 8_1:+65569401 | Msa1207800:CDS |
| CGGTGTTTCTGAGGATTCTA+TGG | 0.301877 | 8_1:+65570086 | Msa1207800:CDS |
| AACAGTTTCTACTTTATCTT+AGG | 0.305913 | 8_1:-65570370 | None:intergenic |
| AATTACAACAACTATGCATT+AGG | 0.321118 | 8_1:+65569279 | Msa1207800:CDS |
| GCACTATAACCTCTGTTTGA+TGG | 0.321858 | 8_1:-65570159 | None:intergenic |
| TGTGGGTCACTGACACAGTA+TGG | 0.329644 | 8_1:+65570024 | Msa1207800:CDS |
| ATAAAATCTCTGCATCTCTT+TGG | 0.334302 | 8_1:-65569434 | None:intergenic |
| CTCGTCAATTGTGAAATTGC+TGG | 0.336695 | 8_1:+65570241 | Msa1207800:three_prime_UTR |
| CATGGAGGCCCCGGAGTTCT+TGG | 0.345994 | 8_1:+65568117 | Msa1207800:CDS |
| GATGGTAGCGTGGAATTGAT+TGG | 0.366010 | 8_1:+65569648 | Msa1207800:CDS |
| GGAGGAAGGTTCACCGTTGC+AGG | 0.366394 | 8_1:-65569372 | None:intergenic |
| ACATTATGTTGAACATATAT+TGG | 0.373351 | 8_1:-65570307 | None:intergenic |
| CTTATTCTCTATTTATCTGC+AGG | 0.402898 | 8_1:+65567960 | Msa1207800:CDS |
| CCAATGCACAAGAGAGTAGT+TGG | 0.407355 | 8_1:+65568664 | Msa1207800:CDS |
| ACATAAACATTAAGATCCTT+TGG | 0.408253 | 8_1:-65568630 | None:intergenic |
| TTTATATATTACTCCGATCA+TGG | 0.414926 | 8_1:+65568099 | Msa1207800:CDS |
| CAGAGTACATCACTTGCCTT+GGG | 0.421295 | 8_1:+65568724 | Msa1207800:CDS |
| GGTTCTCATGTGATGCAATA+TGG | 0.435826 | 8_1:+65569300 | Msa1207800:CDS |
| AAAAGGTTCTTCAGTTCTAC+AGG | 0.438706 | 8_1:+65569692 | Msa1207800:CDS |
| CCAACTACTCTCTTGTGCAT+TGG | 0.445049 | 8_1:-65568664 | None:intergenic |
| GGGATTTGTATAGTGTTGCT+TGG | 0.446757 | 8_1:+65568745 | Msa1207800:CDS |
| GTAATTTGCAATTGAGAGAA+TGG | 0.447007 | 8_1:+65570441 | Msa1207800:three_prime_UTR |
| TCAACAGCAAATCCGAAGAT+AGG | 0.454259 | 8_1:+65568073 | Msa1207800:CDS |
| TTGAAGAAGAAACATGCATC+TGG | 0.455830 | 8_1:+65568453 | Msa1207800:CDS |
| TTTGTATAGTGTTGCTTGGA+TGG | 0.457289 | 8_1:+65568749 | Msa1207800:CDS |
| ATATATAAATATCCTATCTT+CGG | 0.458355 | 8_1:-65568085 | None:intergenic |
| AAGATAAAGTAGAAACTGTT+GGG | 0.472867 | 8_1:+65570373 | Msa1207800:three_prime_UTR |
| ATGTACTCTGGAGGTGGAGC+AGG | 0.473851 | 8_1:-65568711 | None:intergenic |
| TTACTGTTTGGTCCAACAAA+AGG | 0.476498 | 8_1:+65569675 | Msa1207800:CDS |
| CCAGAGTACATCACTTGCCT+TGG | 0.478537 | 8_1:+65568723 | Msa1207800:CDS |
| AAACATAGGAATCATTTAGA+TGG | 0.482034 | 8_1:+65569630 | Msa1207800:CDS |
| TACTCCGATCATGGAGGCCC+CGG | 0.482412 | 8_1:+65568108 | Msa1207800:CDS |
| GGTGAAACAACAATACAAAT+CGG | 0.482608 | 8_1:+65569134 | Msa1207800:CDS |
| CCTTGAGAAGATTGCGGAGA+CGG | 0.485427 | 8_1:+65569605 | Msa1207800:CDS |
| ACTTTGTGTGGTACACTACA+TGG | 0.485469 | 8_1:+65570185 | Msa1207800:exon |
| CAATGCACAAGAGAGTAGTT+GGG | 0.486134 | 8_1:+65568665 | Msa1207800:CDS |
| CTACAGGCTCTTAGAGAACC+TGG | 0.489099 | 8_1:+65569708 | Msa1207800:CDS |
| ACATATATTGGAGGCGCATA+GGG | 0.489470 | 8_1:-65570295 | None:intergenic |
| GGTGGAGCAGGTTCCACTCC+AGG | 0.496020 | 8_1:-65568699 | None:intergenic |
| AACATATATTGGAGGCGCAT+AGG | 0.498831 | 8_1:-65570296 | None:intergenic |
| CCTCCTCACAATGACAAACT+AGG | 0.499499 | 8_1:+65569390 | Msa1207800:CDS |
| CTCCAAGAATGACAGCGTAT+AGG | 0.502835 | 8_1:-65568014 | None:intergenic |
| AGTTGGGGAACTTACTGTCC+TGG | 0.508806 | 8_1:+65568681 | Msa1207800:CDS |
| AACTCCGGGGCCTCCATGAT+CGG | 0.509290 | 8_1:-65568112 | None:intergenic |
| TGGAGACAAGAGTAAAGTAA+AGG | 0.513486 | 8_1:+65568032 | Msa1207800:CDS |
| GTGTTGCTTGGATGGAAGAC+AGG | 0.519440 | 8_1:+65568757 | Msa1207800:CDS |
| TGAAAGTGGTAGCATGTTTG+AGG | 0.520691 | 8_1:+65568599 | Msa1207800:CDS |
| AGTAAAGTAAAGGGTGGAAG+TGG | 0.525742 | 8_1:+65568042 | Msa1207800:CDS |
| TTCTGAGGATTCTATGGAGA+AGG | 0.527244 | 8_1:+65570092 | Msa1207800:CDS |
| ATTGACTGACCAAGAACTCC+GGG | 0.529158 | 8_1:-65568126 | None:intergenic |
| GGAGACAAGAGTAAAGTAAA+GGG | 0.531219 | 8_1:+65568033 | Msa1207800:CDS |
| TACATTGAAGCTTGTGAAAG+TGG | 0.531816 | 8_1:+65568585 | Msa1207800:CDS |
| TAAGATAAAGTAGAAACTGT+TGG | 0.533052 | 8_1:+65570372 | Msa1207800:three_prime_UTR |
| CCAAGGCAAGTGATGTACTC+TGG | 0.534621 | 8_1:-65568723 | None:intergenic |
| GACAAGAGTAAAGTAAAGGG+TGG | 0.537223 | 8_1:+65568036 | Msa1207800:CDS |
| CCGTCTCCGCAATCTTCTCA+AGG | 0.541335 | 8_1:-65569605 | None:intergenic |
| GATCCTAGTTTGTCATTGTG+AGG | 0.542298 | 8_1:-65569393 | None:intergenic |
| TAAAGTAGAAACTGTTGGGT+AGG | 0.543063 | 8_1:+65570377 | Msa1207800:three_prime_UTR |
| TTGCAACAGCGGTGTTTCTG+AGG | 0.547552 | 8_1:+65570077 | Msa1207800:CDS |
| TTATAGTGCTTAACTTTGTG+TGG | 0.550783 | 8_1:+65570173 | Msa1207800:exon |
| TTTGCAATTGAGAGAATGGT+TGG | 0.552160 | 8_1:+65570445 | Msa1207800:three_prime_UTR |
| CATGTATAGCAGCATGTGGT+GGG | 0.553960 | 8_1:+65570115 | Msa1207800:CDS |
| TAAGAGATTAGATCATCAAA+CGG | 0.556011 | 8_1:+65569566 | Msa1207800:CDS |
| TTGCGGAGACGGTGAAACAT+AGG | 0.557136 | 8_1:+65569616 | Msa1207800:CDS |
| TTATGTTGAACATATATTGG+AGG | 0.557765 | 8_1:-65570304 | None:intergenic |
| TTAGTTGTGAAAGAGTAAGC+AGG | 0.560252 | 8_1:+65570343 | Msa1207800:three_prime_UTR |
| CAAGTGATGTACTCTGGAGG+TGG | 0.562964 | 8_1:-65568717 | None:intergenic |
| ATTTATCTGCAGGATTACAC+TGG | 0.567542 | 8_1:+65567970 | Msa1207800:CDS |
| GTTTGTCATTGTGAGGAGGA+AGG | 0.567849 | 8_1:-65569386 | None:intergenic |
| GAAAGTGGTAGCATGTTTGA+GGG | 0.570395 | 8_1:+65568600 | Msa1207800:CDS |
| GAAAAGCTATATTTGTACCA+AGG | 0.574916 | 8_1:+65569342 | Msa1207800:CDS |
| TATGCCGTATGTATATGCTA+TGG | 0.580005 | 8_1:+65568416 | Msa1207800:CDS |
| AAATCCATAGCATATACATA+CGG | 0.584476 | 8_1:-65568420 | None:intergenic |
| TTGCAATTGAGAGAATGGTT+GGG | 0.585076 | 8_1:+65570446 | Msa1207800:three_prime_UTR |
| GCATGTATAGCAGCATGTGG+TGG | 0.587228 | 8_1:+65570114 | Msa1207800:CDS |
| AATTGACTGACCAAGAACTC+CGG | 0.593462 | 8_1:-65568127 | None:intergenic |
| CAAGCACAGCACAAGAAATG+TGG | 0.596178 | 8_1:+65570415 | Msa1207800:three_prime_UTR |
| GGTTGTTTGAAACTCACTGT+GGG | 0.596816 | 8_1:+65570007 | Msa1207800:CDS |
| GTTTGAGGGTGTCATGCCAA+AGG | 0.603641 | 8_1:+65568614 | Msa1207800:CDS |
| TTTGCGAACATTTGCAACAG+CGG | 0.609184 | 8_1:+65570066 | Msa1207800:CDS |
| ATTGAGAGAATGGTTGGGTG+AGG | 0.617217 | 8_1:+65570451 | Msa1207800:three_prime_UTR |
| CCTAGTTTGTCATTGTGAGG+AGG | 0.618985 | 8_1:-65569390 | None:intergenic |
| CGGTTGTTTGAAACTCACTG+TGG | 0.619149 | 8_1:+65570006 | Msa1207800:CDS |
| GGGAACTTACTGTCCTGGAG+TGG | 0.620628 | 8_1:+65568686 | Msa1207800:CDS |
| AGAAATCCTTGAGAAGATTG+CGG | 0.621530 | 8_1:+65569599 | Msa1207800:CDS |
| AAGAAGAAACATGCATCTGG+AGG | 0.625535 | 8_1:+65568456 | Msa1207800:CDS |
| TCATCAACAAGAGGTAGACC+AGG | 0.625602 | 8_1:-65569726 | None:intergenic |
| AGTAAAGGGTGGAAGTGGCA+AGG | 0.631546 | 8_1:+65568047 | Msa1207800:CDS |
| CCGTTGCAGGATCAAAACCT+TGG | 0.635618 | 8_1:-65569359 | None:intergenic |
| AATGCACAAGAGAGTAGTTG+GGG | 0.641706 | 8_1:+65568666 | Msa1207800:CDS |
| GTGGGTCACTGACACAGTAT+GGG | 0.645354 | 8_1:+65570025 | Msa1207800:CDS |
| GAATCATTTAGATGGTAGCG+TGG | 0.666047 | 8_1:+65569638 | Msa1207800:CDS |
| AGAGTACATCACTTGCCTTG+GGG | 0.670035 | 8_1:+65568725 | Msa1207800:CDS |
| AGGCAAGTGATGTACTCTGG+AGG | 0.687328 | 8_1:-65568720 | None:intergenic |
| AAGGCATGTATAGCAGCATG+TGG | 0.690392 | 8_1:+65570111 | Msa1207800:CDS |
| CAACACTATACAAATCCCCA+AGG | 0.692818 | 8_1:-65568740 | None:intergenic |
| CTATTACATCCATCAAACAG+AGG | 0.726919 | 8_1:+65570150 | Msa1207800:CDS |
| ATATATTACTCCGATCATGG+AGG | 0.732812 | 8_1:+65568102 | Msa1207800:CDS |
| TTGACTGACCAAGAACTCCG+GGG | 0.765346 | 8_1:-65568125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAAATATCCTATCTT+CGG | - | chr8_1:65568088-65568107 | None:intergenic | 15.0% |
| !!! | AAAAAATGTCATTTTATGTT+TGG | + | chr8_1:65568526-65568545 | Msa1207800:intron | 15.0% |
| !!! | ATGGTAATATTTCATTTTTC+CGG | + | chr8_1:65568489-65568508 | Msa1207800:intron | 20.0% |
| !! | ATTACATTATTTCAAATGGT+TGG | - | chr8_1:65568794-65568813 | None:intergenic | 20.0% |
| !! | GAACATTACATTATTTCAAA+TGG | - | chr8_1:65568798-65568817 | None:intergenic | 20.0% |
| !! | ACAAATTATGCAAAGTATAT+AGG | - | chr8_1:65568835-65568854 | None:intergenic | 20.0% |
| !! | TTTGTTAGTAATTAGTACTT+AGG | - | chr8_1:65568930-65568949 | None:intergenic | 20.0% |
| !! | CTAATTACTAACAAATTTGT+AGG | + | chr8_1:65568935-65568954 | Msa1207800:intron | 20.0% |
| !! | AACTCAAAAAGTTTGTAATT+TGG | - | chr8_1:65568962-65568981 | None:intergenic | 20.0% |
| !!! | CTATTTGGAGATTTTTAAAT+AGG | - | chr8_1:65568990-65569009 | None:intergenic | 20.0% |
| !!! | TTATGTTTTAATTTTTGTGC+AGG | + | chr8_1:65569239-65569258 | Msa1207800:intron | 20.0% |
| !!! | ATTTGGTTGATAATAAGTTA+AGG | - | chr8_1:65569487-65569506 | None:intergenic | 20.0% |
| !! | TTGATAAAATATAATCAGTG+TGG | + | chr8_1:65569881-65569900 | Msa1207800:intron | 20.0% |
| !! | CTTATTAGTATAACATACAA+TGG | + | chr8_1:65569946-65569965 | Msa1207800:intron | 20.0% |
| !! | ACATTATGTTGAACATATAT+TGG | - | chr8_1:65570310-65570329 | None:intergenic | 20.0% |
| !!! | GATGATTGTTTTAGTATTTT+TGG | + | chr8_1:65570473-65570492 | Msa1207800:three_prime_UTR | 20.0% |
| ! | TTTATATATTACTCCGATCA+TGG | + | chr8_1:65568099-65568118 | Msa1207800:CDS | 25.0% |
| ! | AAATCCATAGCATATACATA+CGG | - | chr8_1:65568423-65568442 | None:intergenic | 25.0% |
| !! | TTTTTACAAGCATCATTTAC+CGG | - | chr8_1:65568511-65568530 | None:intergenic | 25.0% |
| ! | ACATAAACATTAAGATCCTT+TGG | - | chr8_1:65568633-65568652 | None:intergenic | 25.0% |
| ! | TAATTTGGTCCTTGAATTTA+GGG | - | chr8_1:65568866-65568885 | None:intergenic | 25.0% |
| !! | ACTTTCACTTGTTAATTACT+CGG | - | chr8_1:65569025-65569044 | None:intergenic | 25.0% |
| ! | AATTACAACAACTATGCATT+AGG | + | chr8_1:65569279-65569298 | Msa1207800:CDS | 25.0% |
| !! | TTGATAATAAGTTAAGGTTG+AGG | - | chr8_1:65569481-65569500 | None:intergenic | 25.0% |
| ! | ATCTAATCTCTTATACTGAA+AGG | - | chr8_1:65569559-65569578 | None:intergenic | 25.0% |
| ! | TAAGAGATTAGATCATCAAA+CGG | + | chr8_1:65569566-65569585 | Msa1207800:CDS | 25.0% |
| ! | AAACATAGGAATCATTTAGA+TGG | + | chr8_1:65569630-65569649 | Msa1207800:CDS | 25.0% |
| ! | TTATGTTGAACATATATTGG+AGG | - | chr8_1:65570307-65570326 | None:intergenic | 25.0% |
| ! | AACAGTTTCTACTTTATCTT+AGG | - | chr8_1:65570373-65570392 | None:intergenic | 25.0% |
| ! | TAAGATAAAGTAGAAACTGT+TGG | + | chr8_1:65570372-65570391 | Msa1207800:three_prime_UTR | 25.0% |
| ! | AAGATAAAGTAGAAACTGTT+GGG | + | chr8_1:65570373-65570392 | Msa1207800:three_prime_UTR | 25.0% |
| CTTATTCTCTATTTATCTGC+AGG | + | chr8_1:65567960-65567979 | Msa1207800:CDS | 30.0% | |
| CATAACTAATCCTTTGAGTA+GGG | + | chr8_1:65568188-65568207 | Msa1207800:intron | 30.0% | |
| TCATATGATCAACGCATATT+TGG | - | chr8_1:65568256-65568275 | None:intergenic | 30.0% | |
| ACATCAAAAAGAGAATCACT+TGG | - | chr8_1:65568384-65568403 | None:intergenic | 30.0% | |
| ! | AGTGATTCTCTTTTTGATGT+AGG | + | chr8_1:65568384-65568403 | Msa1207800:intron | 30.0% |
| ! | GTGATTCTCTTTTTGATGTA+GGG | + | chr8_1:65568385-65568404 | Msa1207800:intron | 30.0% |
| GTAATTTGGTCCTTGAATTT+AGG | - | chr8_1:65568867-65568886 | None:intergenic | 30.0% | |
| ! | TAAGTCGATTGATCATGTTT+TGG | + | chr8_1:65569044-65569063 | Msa1207800:intron | 30.0% |
| GGTGAAACAACAATACAAAT+CGG | + | chr8_1:65569134-65569153 | Msa1207800:CDS | 30.0% | |
| AACAACAATACAAATCGGTA+AGG | + | chr8_1:65569139-65569158 | Msa1207800:intron | 30.0% | |
| ! | TTTTTGTGCAGGTTAAAGAA+CGG | + | chr8_1:65569250-65569269 | Msa1207800:intron | 30.0% |
| ! | TAGCTTTTCATCTGTAATGT+TGG | - | chr8_1:65569331-65569350 | None:intergenic | 30.0% |
| GAAAAGCTATATTTGTACCA+AGG | + | chr8_1:65569342-65569361 | Msa1207800:CDS | 30.0% | |
| TGACAAACTAGGATCTAAAA+TGG | + | chr8_1:65569401-65569420 | Msa1207800:CDS | 30.0% | |
| ATAAAATCTCTGCATCTCTT+TGG | - | chr8_1:65569437-65569456 | None:intergenic | 30.0% | |
| ! | ATGCAGAGATTTTATTCATG+TGG | + | chr8_1:65569442-65569461 | Msa1207800:CDS | 30.0% |
| ! | TGCAGAGATTTTATTCATGT+GGG | + | chr8_1:65569443-65569462 | Msa1207800:CDS | 30.0% |
| ! | GATTTTATTCATGTGGGAAA+TGG | + | chr8_1:65569449-65569468 | Msa1207800:CDS | 30.0% |
| CAATCATTTGAACAAGGATT+TGG | - | chr8_1:65569504-65569523 | None:intergenic | 30.0% | |
| ! | TTGATTGGAGTTTTACTGTT+TGG | + | chr8_1:65569663-65569682 | Msa1207800:CDS | 30.0% |
| ATTGGGAATGCTTAAAATCA+AGG | + | chr8_1:65569748-65569767 | Msa1207800:intron | 30.0% | |
| TTGGGAATGCTTAAAATCAA+GGG | + | chr8_1:65569749-65569768 | Msa1207800:intron | 30.0% | |
| TAAGTTATGAAGACAGATGT+CGG | - | chr8_1:65569930-65569949 | None:intergenic | 30.0% | |
| TTATAGTGCTTAACTTTGTG+TGG | + | chr8_1:65570173-65570192 | Msa1207800:exon | 30.0% | |
| ! | GTAATTTGCAATTGAGAGAA+TGG | + | chr8_1:65570441-65570460 | Msa1207800:three_prime_UTR | 30.0% |
| ATTTATCTGCAGGATTACAC+TGG | + | chr8_1:65567970-65567989 | Msa1207800:CDS | 35.0% | |
| TGGAGACAAGAGTAAAGTAA+AGG | + | chr8_1:65568032-65568051 | Msa1207800:CDS | 35.0% | |
| GGAGACAAGAGTAAAGTAAA+GGG | + | chr8_1:65568033-65568052 | Msa1207800:CDS | 35.0% | |
| ATATATTACTCCGATCATGG+AGG | + | chr8_1:65568102-65568121 | Msa1207800:CDS | 35.0% | |
| GCATAACTAATCCTTTGAGT+AGG | + | chr8_1:65568187-65568206 | Msa1207800:intron | 35.0% | |
| TGTAATTCTACCCTACTCAA+AGG | - | chr8_1:65568201-65568220 | None:intergenic | 35.0% | |
| GCATATACATACGGCATATT+TGG | - | chr8_1:65568414-65568433 | None:intergenic | 35.0% | |
| TATGCCGTATGTATATGCTA+TGG | + | chr8_1:65568416-65568435 | Msa1207800:CDS | 35.0% | |
| TTGAAGAAGAAACATGCATC+TGG | + | chr8_1:65568453-65568472 | Msa1207800:CDS | 35.0% | |
| ATCTGGAGGTTACAAAAAGA+TGG | + | chr8_1:65568470-65568489 | Msa1207800:CDS | 35.0% | |
| ! | GTGTGATTTTGTGCTTGTAT+AGG | + | chr8_1:65568557-65568576 | Msa1207800:intron | 35.0% |
| TACATTGAAGCTTGTGAAAG+TGG | + | chr8_1:65568585-65568604 | Msa1207800:CDS | 35.0% | |
| !! | TTTGTATAGTGTTGCTTGGA+TGG | + | chr8_1:65568749-65568768 | Msa1207800:CDS | 35.0% |
| TGTTTGCATCCCTAAATTCA+AGG | + | chr8_1:65568854-65568873 | Msa1207800:intron | 35.0% | |
| ! | TCACTTGTTAATTACTCGGT+AGG | - | chr8_1:65569021-65569040 | None:intergenic | 35.0% |
| GCACAATCTAAAAAGGGAAA+CGG | + | chr8_1:65569113-65569132 | Msa1207800:CDS | 35.0% | |
| AGTATCCCTATTAGCATTTC+AGG | + | chr8_1:65569189-65569208 | Msa1207800:intron | 35.0% | |
| CTTCTCCTGAAATGCTAATA+GGG | - | chr8_1:65569197-65569216 | None:intergenic | 35.0% | |
| TCTTCTCCTGAAATGCTAAT+AGG | - | chr8_1:65569198-65569217 | None:intergenic | 35.0% | |
| ACTGCACAATCATTTGAACA+AGG | - | chr8_1:65569510-65569529 | None:intergenic | 35.0% | |
| AGAAATCCTTGAGAAGATTG+CGG | + | chr8_1:65569599-65569618 | Msa1207800:CDS | 35.0% | |
| TTACTGTTTGGTCCAACAAA+AGG | + | chr8_1:65569675-65569694 | Msa1207800:CDS | 35.0% | |
| ! | AGAACTGAAGAACCTTTTGT+TGG | - | chr8_1:65569690-65569709 | None:intergenic | 35.0% |
| AAAAGGTTCTTCAGTTCTAC+AGG | + | chr8_1:65569692-65569711 | Msa1207800:CDS | 35.0% | |
| !! | TCTACCTCTTGTTGATGATT+GGG | + | chr8_1:65569731-65569750 | Msa1207800:intron | 35.0% |
| TACGTTATCGATGTTCGATT+TGG | + | chr8_1:65569972-65569991 | Msa1207800:intron | 35.0% | |
| !!! | GATGTTCGATTTGGTTTTGT+AGG | + | chr8_1:65569981-65570000 | Msa1207800:intron | 35.0% |
| !!! | TCGATTTGGTTTTGTAGGTT+CGG | + | chr8_1:65569986-65570005 | Msa1207800:intron | 35.0% |
| CTATTACATCCATCAAACAG+AGG | + | chr8_1:65570150-65570169 | Msa1207800:CDS | 35.0% | |
| TTAGTTGTGAAAGAGTAAGC+AGG | + | chr8_1:65570343-65570362 | Msa1207800:three_prime_UTR | 35.0% | |
| TAAAGTAGAAACTGTTGGGT+AGG | + | chr8_1:65570377-65570396 | Msa1207800:three_prime_UTR | 35.0% | |
| TTTGCAATTGAGAGAATGGT+TGG | + | chr8_1:65570445-65570464 | Msa1207800:three_prime_UTR | 35.0% | |
| TTGCAATTGAGAGAATGGTT+GGG | + | chr8_1:65570446-65570465 | Msa1207800:three_prime_UTR | 35.0% | |
| AACCTATACGCTGTCATTCT+TGG | + | chr8_1:65568012-65568031 | Msa1207800:CDS | 40.0% | |
| GACAAGAGTAAAGTAAAGGG+TGG | + | chr8_1:65568036-65568055 | Msa1207800:CDS | 40.0% | |
| AGTAAAGTAAAGGGTGGAAG+TGG | + | chr8_1:65568042-65568061 | Msa1207800:CDS | 40.0% | |
| TCAACAGCAAATCCGAAGAT+AGG | + | chr8_1:65568073-65568092 | Msa1207800:CDS | 40.0% | |
| AATTGACTGACCAAGAACTC+CGG | - | chr8_1:65568130-65568149 | None:intergenic | 40.0% | |
| ! | TGGAACTTTTTACGTGCAAG+AGG | - | chr8_1:65568236-65568255 | None:intergenic | 40.0% |
| AGTTCGATCAAACGAGAACT+AGG | + | chr8_1:65568334-65568353 | Msa1207800:intron | 40.0% | |
| ACGAGAACTAGGTTTATCCT+TGG | + | chr8_1:65568345-65568364 | Msa1207800:intron | 40.0% | |
| CGAGAACTAGGTTTATCCTT+GGG | + | chr8_1:65568346-65568365 | Msa1207800:intron | 40.0% | |
| AAGAAGAAACATGCATCTGG+AGG | + | chr8_1:65568456-65568475 | Msa1207800:CDS | 40.0% | |
| TGAAAGTGGTAGCATGTTTG+AGG | + | chr8_1:65568599-65568618 | Msa1207800:CDS | 40.0% | |
| GAAAGTGGTAGCATGTTTGA+GGG | + | chr8_1:65568600-65568619 | Msa1207800:CDS | 40.0% | |
| CAATGCACAAGAGAGTAGTT+GGG | + | chr8_1:65568665-65568684 | Msa1207800:CDS | 40.0% | |
| AATGCACAAGAGAGTAGTTG+GGG | + | chr8_1:65568666-65568685 | Msa1207800:CDS | 40.0% | |
| CAACACTATACAAATCCCCA+AGG | - | chr8_1:65568743-65568762 | None:intergenic | 40.0% | |
| ! | GGGATTTGTATAGTGTTGCT+TGG | + | chr8_1:65568745-65568764 | Msa1207800:CDS | 40.0% |
| CTCGCTGCATAATACAAAAC+AGG | - | chr8_1:65569091-65569110 | None:intergenic | 40.0% | |
| CGAGTCGCACAATCTAAAAA+GGG | + | chr8_1:65569107-65569126 | Msa1207800:CDS | 40.0% | |
| GGTTCTCATGTGATGCAATA+TGG | + | chr8_1:65569300-65569319 | Msa1207800:CDS | 40.0% | |
| ! | GATCCTAGTTTGTCATTGTG+AGG | - | chr8_1:65569396-65569415 | None:intergenic | 40.0% |
| ! | GAATCATTTAGATGGTAGCG+TGG | + | chr8_1:65569638-65569657 | Msa1207800:CDS | 40.0% |
| !! | GTCTACCTCTTGTTGATGAT+TGG | + | chr8_1:65569730-65569749 | Msa1207800:intron | 40.0% |
| CATTCCCAATCATCAACAAG+AGG | - | chr8_1:65569738-65569757 | None:intergenic | 40.0% | |
| ! | GGTTGTTTGAAACTCACTGT+GGG | + | chr8_1:65570007-65570026 | Msa1207800:CDS | 40.0% |
| TTTGCGAACATTTGCAACAG+CGG | + | chr8_1:65570066-65570085 | Msa1207800:CDS | 40.0% | |
| ! | TTCTGAGGATTCTATGGAGA+AGG | + | chr8_1:65570092-65570111 | Msa1207800:CDS | 40.0% |
| GCACTATAACCTCTGTTTGA+TGG | - | chr8_1:65570162-65570181 | None:intergenic | 40.0% | |
| ACTTTGTGTGGTACACTACA+TGG | + | chr8_1:65570185-65570204 | Msa1207800:exon | 40.0% | |
| CTCGTCAATTGTGAAATTGC+TGG | + | chr8_1:65570241-65570260 | Msa1207800:three_prime_UTR | 40.0% | |
| ! | ACATATATTGGAGGCGCATA+GGG | - | chr8_1:65570298-65570317 | None:intergenic | 40.0% |
| ! | AACATATATTGGAGGCGCAT+AGG | - | chr8_1:65570299-65570318 | None:intergenic | 40.0% |
| CTCCAAGAATGACAGCGTAT+AGG | - | chr8_1:65568017-65568036 | None:intergenic | 45.0% | |
| ATTGACTGACCAAGAACTCC+GGG | - | chr8_1:65568129-65568148 | None:intergenic | 45.0% | |
| !! | TTGGCTGTTATTTCTGCCCA+AGG | - | chr8_1:65568365-65568384 | None:intergenic | 45.0% |
| CCAACTACTCTCTTGTGCAT+TGG | - | chr8_1:65568667-65568686 | None:intergenic | 45.0% | |
| CCAATGCACAAGAGAGTAGT+TGG | + | chr8_1:65568664-65568683 | Msa1207800:CDS | 45.0% | |
| CAGAGTACATCACTTGCCTT+GGG | + | chr8_1:65568724-65568743 | Msa1207800:CDS | 45.0% | |
| AGAGTACATCACTTGCCTTG+GGG | + | chr8_1:65568725-65568744 | Msa1207800:CDS | 45.0% | |
| CGGTAGGTCTCTGAACTATT+TGG | - | chr8_1:65569005-65569024 | None:intergenic | 45.0% | |
| GCGAGTCGCACAATCTAAAA+AGG | + | chr8_1:65569106-65569125 | Msa1207800:intron | 45.0% | |
| !! | CCAAGGTTTTGATCCTGCAA+CGG | + | chr8_1:65569359-65569378 | Msa1207800:CDS | 45.0% |
| GTTTGTCATTGTGAGGAGGA+AGG | - | chr8_1:65569389-65569408 | None:intergenic | 45.0% | |
| ! | CCTAGTTTGTCATTGTGAGG+AGG | - | chr8_1:65569393-65569412 | None:intergenic | 45.0% |
| CCTCCTCACAATGACAAACT+AGG | + | chr8_1:65569390-65569409 | Msa1207800:CDS | 45.0% | |
| ! | GATGGTAGCGTGGAATTGAT+TGG | + | chr8_1:65569648-65569667 | Msa1207800:CDS | 45.0% |
| TCATCAACAAGAGGTAGACC+AGG | - | chr8_1:65569729-65569748 | None:intergenic | 45.0% | |
| ! | CCTGAAGGCATGTCTAGTAT+CGG | + | chr8_1:65569828-65569847 | Msa1207800:intron | 45.0% |
| ! | CGGTTGTTTGAAACTCACTG+TGG | + | chr8_1:65570006-65570025 | Msa1207800:CDS | 45.0% |
| ! | CGGTGTTTCTGAGGATTCTA+TGG | + | chr8_1:65570086-65570105 | Msa1207800:CDS | 45.0% |
| AAGGCATGTATAGCAGCATG+TGG | + | chr8_1:65570111-65570130 | Msa1207800:CDS | 45.0% | |
| CATGTATAGCAGCATGTGGT+GGG | + | chr8_1:65570115-65570134 | Msa1207800:CDS | 45.0% | |
| CAAGCACAGCACAAGAAATG+TGG | + | chr8_1:65570415-65570434 | Msa1207800:three_prime_UTR | 45.0% | |
| ATTGAGAGAATGGTTGGGTG+AGG | + | chr8_1:65570451-65570470 | Msa1207800:three_prime_UTR | 45.0% | |
| !!! | TTTTAAATAATTTTGTAATT+TGG | - | chr8_1:65568881-65568900 | None:intergenic | 5.0% |
| AGTAAAGGGTGGAAGTGGCA+AGG | + | chr8_1:65568047-65568066 | Msa1207800:CDS | 50.0% | |
| TTGACTGACCAAGAACTCCG+GGG | - | chr8_1:65568128-65568147 | None:intergenic | 50.0% | |
| !! | GTTTGAGGGTGTCATGCCAA+AGG | + | chr8_1:65568614-65568633 | Msa1207800:CDS | 50.0% |
| AGTTGGGGAACTTACTGTCC+TGG | + | chr8_1:65568681-65568700 | Msa1207800:CDS | 50.0% | |
| ! | CAAGTGATGTACTCTGGAGG+TGG | - | chr8_1:65568720-65568739 | None:intergenic | 50.0% |
| AGGCAAGTGATGTACTCTGG+AGG | - | chr8_1:65568723-65568742 | None:intergenic | 50.0% | |
| CCAAGGCAAGTGATGTACTC+TGG | - | chr8_1:65568726-65568745 | None:intergenic | 50.0% | |
| CCAGAGTACATCACTTGCCT+TGG | + | chr8_1:65568723-65568742 | Msa1207800:CDS | 50.0% | |
| !! | GTGTTGCTTGGATGGAAGAC+AGG | + | chr8_1:65568757-65568776 | Msa1207800:CDS | 50.0% |
| CCGTTGCAGGATCAAAACCT+TGG | - | chr8_1:65569362-65569381 | None:intergenic | 50.0% | |
| CCTTGAGAAGATTGCGGAGA+CGG | + | chr8_1:65569605-65569624 | Msa1207800:CDS | 50.0% | |
| TTGCGGAGACGGTGAAACAT+AGG | + | chr8_1:65569616-65569635 | Msa1207800:CDS | 50.0% | |
| CTACAGGCTCTTAGAGAACC+TGG | + | chr8_1:65569708-65569727 | Msa1207800:CDS | 50.0% | |
| AGCACGACACTTTCACCTGA+AGG | + | chr8_1:65569813-65569832 | Msa1207800:intron | 50.0% | |
| CCGATACTAGACATGCCTTC+AGG | - | chr8_1:65569831-65569850 | None:intergenic | 50.0% | |
| TGTGGGTCACTGACACAGTA+TGG | + | chr8_1:65570024-65570043 | Msa1207800:CDS | 50.0% | |
| GTGGGTCACTGACACAGTAT+GGG | + | chr8_1:65570025-65570044 | Msa1207800:CDS | 50.0% | |
| ! | TTGCAACAGCGGTGTTTCTG+AGG | + | chr8_1:65570077-65570096 | Msa1207800:CDS | 50.0% |
| GCATGTATAGCAGCATGTGG+TGG | + | chr8_1:65570114-65570133 | Msa1207800:CDS | 50.0% | |
| GGGAACTTACTGTCCTGGAG+TGG | + | chr8_1:65568686-65568705 | Msa1207800:CDS | 55.0% | |
| ! | ATGTACTCTGGAGGTGGAGC+AGG | - | chr8_1:65568714-65568733 | None:intergenic | 55.0% |
| CCGTCTCCGCAATCTTCTCA+AGG | - | chr8_1:65569608-65569627 | None:intergenic | 55.0% | |
| TACTCCGATCATGGAGGCCC+CGG | + | chr8_1:65568108-65568127 | Msa1207800:CDS | 60.0% | |
| AACTCCGGGGCCTCCATGAT+CGG | - | chr8_1:65568115-65568134 | None:intergenic | 60.0% | |
| GGAGGAAGGTTCACCGTTGC+AGG | - | chr8_1:65569375-65569394 | None:intergenic | 60.0% | |
| CATGGAGGCCCCGGAGTTCT+TGG | + | chr8_1:65568117-65568136 | Msa1207800:CDS | 65.0% | |
| GGTGGAGCAGGTTCCACTCC+AGG | - | chr8_1:65568702-65568721 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 65567958 | 65570558 | 65567958 | ID=Msa1207800;Name=Msa1207800 |
| chr8_1 | mRNA | 65567958 | 65570558 | 65567958 | ID=Msa1207800-mRNA-1;Parent=Msa1207800;Name=Msa1207800-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.83|0.71|1|1|1|7|373|361 |
| chr8_1 | exon | 65567958 | 65568138 | 65567958 | ID=Msa1207800-mRNA-1:exon:21494;Parent=Msa1207800-mRNA-1 |
| chr8_1 | exon | 65568406 | 65568491 | 65568406 | ID=Msa1207800-mRNA-1:exon:21495;Parent=Msa1207800-mRNA-1 |
| chr8_1 | exon | 65568579 | 65568778 | 65568579 | ID=Msa1207800-mRNA-1:exon:21496;Parent=Msa1207800-mRNA-1 |
| chr8_1 | exon | 65569107 | 65569155 | 65569107 | ID=Msa1207800-mRNA-1:exon:21497;Parent=Msa1207800-mRNA-1 |
| chr8_1 | exon | 65569261 | 65569470 | 65569261 | ID=Msa1207800-mRNA-1:exon:21498;Parent=Msa1207800-mRNA-1 |
| chr8_1 | exon | 65569564 | 65569740 | 65569564 | ID=Msa1207800-mRNA-1:exon:21499;Parent=Msa1207800-mRNA-1 |
| chr8_1 | exon | 65570003 | 65570558 | 65570003 | ID=Msa1207800-mRNA-1:exon:21500;Parent=Msa1207800-mRNA-1 |
| chr8_1 | CDS | 65567958 | 65568138 | 65567958 | ID=Msa1207800-mRNA-1:cds;Parent=Msa1207800-mRNA-1 |
| chr8_1 | CDS | 65568406 | 65568491 | 65568406 | ID=Msa1207800-mRNA-1:cds;Parent=Msa1207800-mRNA-1 |
| chr8_1 | CDS | 65568579 | 65568778 | 65568579 | ID=Msa1207800-mRNA-1:cds;Parent=Msa1207800-mRNA-1 |
| chr8_1 | CDS | 65569107 | 65569155 | 65569107 | ID=Msa1207800-mRNA-1:cds;Parent=Msa1207800-mRNA-1 |
| chr8_1 | CDS | 65569261 | 65569470 | 65569261 | ID=Msa1207800-mRNA-1:cds;Parent=Msa1207800-mRNA-1 |
| chr8_1 | CDS | 65569564 | 65569740 | 65569564 | ID=Msa1207800-mRNA-1:cds;Parent=Msa1207800-mRNA-1 |
| chr8_1 | CDS | 65570003 | 65570185 | 65570003 | ID=Msa1207800-mRNA-1:cds;Parent=Msa1207800-mRNA-1 |
| chr8_1 | three_prime_UTR | 65570186 | 65570558 | 65570186 | ID=Msa1207800-mRNA-1:three_prime_utr;Parent=Msa1207800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
