Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329210 | sp|P49045|VPE_SOYBN | 79.189 | 370 | 67 | 1 | 2 | 361 | 126 | 495 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329210 | G7JK51 | 94.231 | 364 | 11 | 1 | 8 | 361 | 131 | 494 | 0.0 | 709 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056930 | Msa1329210 | 0.826810 | 2.211927e-54 | -8.615850e-47 |
| Msa0057010 | Msa1329210 | 0.821307 | 4.328633e-53 | -8.615850e-47 |
| Msa0095920 | Msa1329210 | 0.814147 | 1.786371e-51 | -8.615850e-47 |
| Msa0108490 | Msa1329210 | -0.803163 | 3.973915e-49 | -8.615850e-47 |
| Msa1257840 | Msa1329210 | 0.916270 | 2.179441e-85 | -8.615850e-47 |
| Msa1329130 | Msa1329210 | 0.998806 | 2.546071e-277 | -8.615850e-47 |
| Msa1329210 | Msa1412370 | 0.814975 | 1.171769e-51 | -8.615850e-47 |
| Msa0325690 | Msa1329210 | 0.812632 | 3.845358e-51 | -8.615850e-47 |
| Msa1207790 | Msa1329210 | 0.976642 | 3.224404e-142 | -8.615850e-47 |
| Msa1207800 | Msa1329210 | 0.970975 | 1.933174e-132 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329210 | MtrunA17_Chr4g0056561 | 94.231 | 364 | 11 | 1 | 8 | 361 | 131 | 494 | 0.0 | 709 |
| Msa1329210 | MtrunA17_Chr3g0135491 | 54.885 | 348 | 145 | 3 | 8 | 344 | 121 | 467 | 5.96e-139 | 404 |
| Msa1329210 | MtrunA17_Chr1g0151801 | 53.951 | 367 | 153 | 4 | 8 | 361 | 130 | 493 | 1.02e-130 | 383 |
| Msa1329210 | MtrunA17_Chr7g0248651 | 40.782 | 358 | 184 | 4 | 8 | 344 | 119 | 469 | 8.45e-89 | 275 |
| Msa1329210 | MtrunA17_Chr7g0246051 | 54.054 | 148 | 68 | 0 | 8 | 155 | 118 | 265 | 2.09e-54 | 180 |
| Msa1329210 | MtrunA17_Chr7g0226441 | 34.615 | 208 | 102 | 4 | 161 | 344 | 1 | 198 | 1.62e-33 | 123 |
| Msa1329210 | MtrunA17_Chr7g0226431 | 66.667 | 63 | 21 | 0 | 93 | 155 | 1 | 63 | 1.30e-25 | 98.6 |
| Msa1329210 | MtrunA17_Chr7g0246061 | 31.579 | 190 | 105 | 5 | 173 | 346 | 8 | 188 | 8.06e-21 | 89.0 |
| Msa1329210 | MtrunA17_Chr7g0226421 | 53.704 | 54 | 25 | 0 | 8 | 61 | 106 | 159 | 3.32e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329210 | AT1G62710.1 | 67.486 | 366 | 105 | 3 | 8 | 361 | 123 | 486 | 0.0 | 519 |
| Msa1329210 | AT4G32940.1 | 56.164 | 365 | 148 | 3 | 8 | 361 | 131 | 494 | 1.71e-134 | 393 |
| Msa1329210 | AT2G25940.1 | 53.151 | 365 | 158 | 4 | 8 | 361 | 116 | 478 | 1.34e-127 | 375 |
| Msa1329210 | AT3G20210.1 | 40.000 | 350 | 190 | 5 | 8 | 340 | 118 | 464 | 1.78e-76 | 243 |
Find 103 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATACATACGGCATATT+TGG | 0.217041 | 8_4:-47562765 | None:intergenic |
| AAGACAAATTAAATTAAATT+AGG | 0.218095 | 8_4:+47564891 | Msa1329210:three_prime_UTR |
| GCGAGTCACACAATCTAAAA+AGG | 0.244722 | 8_4:+47563460 | Msa1329210:intron |
| AACCTATACGCTGTCATTCT+TGG | 0.266606 | 8_4:+47562409 | Msa1329210:CDS |
| TGACAAACTAGGATCTAAAA+TGG | 0.296605 | 8_4:+47563755 | Msa1329210:CDS |
| CGGTGTTTCTGAGGATTCTA+TGG | 0.301877 | 8_4:+47564440 | Msa1329210:CDS |
| AACAGTTTCTACTTTATCTT+AGG | 0.305913 | 8_4:-47564724 | None:intergenic |
| AATTACAACAACTATGCATT+AGG | 0.321118 | 8_4:+47563633 | Msa1329210:CDS |
| GCACTATAACCTCTGTTTGA+TGG | 0.321858 | 8_4:-47564513 | None:intergenic |
| TGTGGGTCACTGACACAGTA+TGG | 0.329644 | 8_4:+47564378 | Msa1329210:CDS |
| ATAAAATCTCTGCATCTCTT+TGG | 0.334302 | 8_4:-47563788 | None:intergenic |
| CTCGTCAATTGTGAAATTGC+TGG | 0.336695 | 8_4:+47564595 | Msa1329210:three_prime_UTR |
| CATGGAGGCCCCGGAGTTCT+TGG | 0.345994 | 8_4:+47562514 | Msa1329210:CDS |
| GATGGTAGCGTGGAATTGAT+TGG | 0.366010 | 8_4:+47564002 | Msa1329210:CDS |
| GGAGGAAGGTTCACCGTTGC+AGG | 0.366394 | 8_4:-47563726 | None:intergenic |
| ACATTATGTTGAACATATAT+TGG | 0.373351 | 8_4:-47564661 | None:intergenic |
| CTTATTCTCTATTTATCTGC+AGG | 0.402898 | 8_4:+47562357 | Msa1329210:CDS |
| CCAATGCACAAGAGAGTAGT+TGG | 0.407355 | 8_4:+47563018 | Msa1329210:CDS |
| ACATAAACATTAAGATCCTT+TGG | 0.408253 | 8_4:-47562984 | None:intergenic |
| TTTATATATTACTCCGATCA+TGG | 0.414926 | 8_4:+47562496 | Msa1329210:CDS |
| CAGAGTACATCACTTGCCTT+GGG | 0.421295 | 8_4:+47563078 | Msa1329210:CDS |
| GGTTCTCATGTGATGCAATA+TGG | 0.435826 | 8_4:+47563654 | Msa1329210:CDS |
| AAAAGGTTCTTCAGTTCTAC+AGG | 0.438706 | 8_4:+47564046 | Msa1329210:CDS |
| CCAACTACTCTCTTGTGCAT+TGG | 0.445049 | 8_4:-47563018 | None:intergenic |
| GGGATTTGTATAGTGTTGCT+TGG | 0.446757 | 8_4:+47563099 | Msa1329210:CDS |
| GTAATTTGCAATTGAGAGAA+TGG | 0.447007 | 8_4:+47564795 | Msa1329210:three_prime_UTR |
| TCAACAGCAAATCCGAAGAT+AGG | 0.454259 | 8_4:+47562470 | Msa1329210:CDS |
| TTGAAGAAGAAACATGCATC+TGG | 0.455830 | 8_4:+47562807 | Msa1329210:CDS |
| TTTGTATAGTGTTGCTTGGA+TGG | 0.457289 | 8_4:+47563103 | Msa1329210:CDS |
| ATATATAAATATCCTATCTT+CGG | 0.458355 | 8_4:-47562482 | None:intergenic |
| AAGATAAAGTAGAAACTGTT+GGG | 0.472867 | 8_4:+47564727 | Msa1329210:three_prime_UTR |
| ATGTACTCTGGAGGTGGAGC+AGG | 0.473851 | 8_4:-47563065 | None:intergenic |
| TTACTGTTTGGTCCAACAAA+AGG | 0.476498 | 8_4:+47564029 | Msa1329210:CDS |
| CCAGAGTACATCACTTGCCT+TGG | 0.478537 | 8_4:+47563077 | Msa1329210:CDS |
| AAACATAGGAATCATTTAGA+TGG | 0.482034 | 8_4:+47563984 | Msa1329210:CDS |
| TACTCCGATCATGGAGGCCC+CGG | 0.482412 | 8_4:+47562505 | Msa1329210:CDS |
| GGTGAAACAACAATACAAAT+CGG | 0.482608 | 8_4:+47563488 | Msa1329210:CDS |
| CCTTGAGAAGATTGCGGAGA+CGG | 0.485427 | 8_4:+47563959 | Msa1329210:CDS |
| ACTTTGTGTGGTACACTACA+TGG | 0.485469 | 8_4:+47564539 | Msa1329210:exon |
| CAATGCACAAGAGAGTAGTT+GGG | 0.486134 | 8_4:+47563019 | Msa1329210:CDS |
| CTACAGGCTCTTAGAGAACC+TGG | 0.489099 | 8_4:+47564062 | Msa1329210:CDS |
| ACATATATTGGAGGCGCATA+GGG | 0.489470 | 8_4:-47564649 | None:intergenic |
| GGTGGAGCAGGTTCCACTCC+AGG | 0.496020 | 8_4:-47563053 | None:intergenic |
| AACATATATTGGAGGCGCAT+AGG | 0.498831 | 8_4:-47564650 | None:intergenic |
| CCTCCTCACAATGACAAACT+AGG | 0.499499 | 8_4:+47563744 | Msa1329210:CDS |
| CTCCAAGAATGACAGCGTAT+AGG | 0.502835 | 8_4:-47562411 | None:intergenic |
| AGTTGGGGAACTTACTGTCC+TGG | 0.508806 | 8_4:+47563035 | Msa1329210:CDS |
| AACTCCGGGGCCTCCATGAT+CGG | 0.509290 | 8_4:-47562509 | None:intergenic |
| TGGAGACAAGAGTAAAGTAA+AGG | 0.513486 | 8_4:+47562429 | Msa1329210:CDS |
| GTGTTGCTTGGATGGAAGAC+AGG | 0.519440 | 8_4:+47563111 | Msa1329210:CDS |
| TGAAAGTGGTAGCATGTTTG+AGG | 0.520691 | 8_4:+47562953 | Msa1329210:CDS |
| AGTAAAGTAAAGGGTGGAAG+TGG | 0.525742 | 8_4:+47562439 | Msa1329210:CDS |
| TTCTGAGGATTCTATGGAGA+AGG | 0.527244 | 8_4:+47564446 | Msa1329210:CDS |
| ATTGACTGACCAAGAACTCC+GGG | 0.529158 | 8_4:-47562523 | None:intergenic |
| GGAGACAAGAGTAAAGTAAA+GGG | 0.531219 | 8_4:+47562430 | Msa1329210:CDS |
| TACATTGAAGCTTGTGAAAG+TGG | 0.531816 | 8_4:+47562939 | Msa1329210:CDS |
| TAAGATAAAGTAGAAACTGT+TGG | 0.533052 | 8_4:+47564726 | Msa1329210:three_prime_UTR |
| CCAAGGCAAGTGATGTACTC+TGG | 0.534621 | 8_4:-47563077 | None:intergenic |
| GACAAGAGTAAAGTAAAGGG+TGG | 0.537223 | 8_4:+47562433 | Msa1329210:CDS |
| CCGTCTCCGCAATCTTCTCA+AGG | 0.541335 | 8_4:-47563959 | None:intergenic |
| GATCCTAGTTTGTCATTGTG+AGG | 0.542298 | 8_4:-47563747 | None:intergenic |
| TAAAGTAGAAACTGTTGGGT+AGG | 0.543063 | 8_4:+47564731 | Msa1329210:three_prime_UTR |
| TTGCAACAGCGGTGTTTCTG+AGG | 0.547552 | 8_4:+47564431 | Msa1329210:CDS |
| TTATAGTGCTTAACTTTGTG+TGG | 0.550783 | 8_4:+47564527 | Msa1329210:exon |
| TTTGCAATTGAGAGAATGGT+TGG | 0.552160 | 8_4:+47564799 | Msa1329210:three_prime_UTR |
| CATGTATAGCAGCATGTGGT+GGG | 0.553960 | 8_4:+47564469 | Msa1329210:CDS |
| TAAGAGATTAGATCATCAAA+CGG | 0.556011 | 8_4:+47563920 | Msa1329210:CDS |
| TTGCGGAGACGGTGAAACAT+AGG | 0.557136 | 8_4:+47563970 | Msa1329210:CDS |
| TTATGTTGAACATATATTGG+AGG | 0.557765 | 8_4:-47564658 | None:intergenic |
| TTAGTTGTGAAAGAGTAAGC+AGG | 0.560252 | 8_4:+47564697 | Msa1329210:three_prime_UTR |
| CAAGTGATGTACTCTGGAGG+TGG | 0.562964 | 8_4:-47563071 | None:intergenic |
| ATTTATCTGCAGGATTACAC+TGG | 0.567542 | 8_4:+47562367 | Msa1329210:CDS |
| GTTTGTCATTGTGAGGAGGA+AGG | 0.567849 | 8_4:-47563740 | None:intergenic |
| GAAAGTGGTAGCATGTTTGA+GGG | 0.570395 | 8_4:+47562954 | Msa1329210:CDS |
| GAAAAGCTATATTTGTACCA+AGG | 0.574916 | 8_4:+47563696 | Msa1329210:CDS |
| TATGCCGTATGTATATGCTA+TGG | 0.580005 | 8_4:+47562770 | Msa1329210:CDS |
| AAATCCATAGCATATACATA+CGG | 0.584476 | 8_4:-47562774 | None:intergenic |
| TTGCAATTGAGAGAATGGTT+GGG | 0.585076 | 8_4:+47564800 | Msa1329210:three_prime_UTR |
| GCATGTATAGCAGCATGTGG+TGG | 0.587228 | 8_4:+47564468 | Msa1329210:CDS |
| AATTGACTGACCAAGAACTC+CGG | 0.593462 | 8_4:-47562524 | None:intergenic |
| GGTTGTTTGAAACTCACTGT+GGG | 0.596816 | 8_4:+47564361 | Msa1329210:CDS |
| GTTTGAGGGTGTCATGCCAA+AGG | 0.603641 | 8_4:+47562968 | Msa1329210:CDS |
| CAAGCACATCACAAGAAATG+TGG | 0.603856 | 8_4:+47564769 | Msa1329210:three_prime_UTR |
| TTTGCGAACATTTGCAACAG+CGG | 0.609184 | 8_4:+47564420 | Msa1329210:CDS |
| ATTGAGAGAATGGTTGGGTG+AGG | 0.617217 | 8_4:+47564805 | Msa1329210:three_prime_UTR |
| CCTAGTTTGTCATTGTGAGG+AGG | 0.618985 | 8_4:-47563744 | None:intergenic |
| CGGTTGTTTGAAACTCACTG+TGG | 0.619149 | 8_4:+47564360 | Msa1329210:CDS |
| GGGAACTTACTGTCCTGGAG+TGG | 0.620628 | 8_4:+47563040 | Msa1329210:CDS |
| AGAAATCCTTGAGAAGATTG+CGG | 0.621530 | 8_4:+47563953 | Msa1329210:CDS |
| AAGAAGAAACATGCATCTGG+AGG | 0.625535 | 8_4:+47562810 | Msa1329210:CDS |
| TCATCAACAAGAGGTAGACC+AGG | 0.625602 | 8_4:-47564080 | None:intergenic |
| AGTAAAGGGTGGAAGTGGCA+AGG | 0.631546 | 8_4:+47562444 | Msa1329210:CDS |
| CCGTTGCAGGATCAAAACCT+TGG | 0.635618 | 8_4:-47563713 | None:intergenic |
| AATGCACAAGAGAGTAGTTG+GGG | 0.641706 | 8_4:+47563020 | Msa1329210:CDS |
| GTGGGTCACTGACACAGTAT+GGG | 0.645354 | 8_4:+47564379 | Msa1329210:CDS |
| GAATCATTTAGATGGTAGCG+TGG | 0.666047 | 8_4:+47563992 | Msa1329210:CDS |
| AGAGTACATCACTTGCCTTG+GGG | 0.670035 | 8_4:+47563079 | Msa1329210:CDS |
| AGGCAAGTGATGTACTCTGG+AGG | 0.687328 | 8_4:-47563074 | None:intergenic |
| AAGGCATGTATAGCAGCATG+TGG | 0.690392 | 8_4:+47564465 | Msa1329210:CDS |
| CAACACTATACAAATCCCCA+AGG | 0.692818 | 8_4:-47563094 | None:intergenic |
| CTATTACATCCATCAAACAG+AGG | 0.726919 | 8_4:+47564504 | Msa1329210:CDS |
| ATATATTACTCCGATCATGG+AGG | 0.732812 | 8_4:+47562499 | Msa1329210:CDS |
| TTGACTGACCAAGAACTCCG+GGG | 0.765346 | 8_4:-47562522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAAATATCCTATCTT+CGG | - | chr8_4:47562485-47562504 | None:intergenic | 15.0% |
| !!! | AAAAAATGTCATTTTATGTT+TGG | + | chr8_4:47562880-47562899 | Msa1329210:intron | 15.0% |
| !!! | ATGGTAATATTTCATTTTTC+CGG | + | chr8_4:47562843-47562862 | Msa1329210:intron | 20.0% |
| !! | ATTACATTATTTCAAATGGT+TGG | - | chr8_4:47563148-47563167 | None:intergenic | 20.0% |
| !! | GAACATTACATTATTTCAAA+TGG | - | chr8_4:47563152-47563171 | None:intergenic | 20.0% |
| !! | ACAAATTATGCAAAGTATAT+AGG | - | chr8_4:47563189-47563208 | None:intergenic | 20.0% |
| !! | TTTGTTAGTAATTAGTACTT+AGG | - | chr8_4:47563284-47563303 | None:intergenic | 20.0% |
| !! | CTAATTACTAACAAATTTGT+AGG | + | chr8_4:47563289-47563308 | Msa1329210:intron | 20.0% |
| !! | AACTCAAAAAGTTTGTAATT+TGG | - | chr8_4:47563316-47563335 | None:intergenic | 20.0% |
| !!! | CTATTTGGAGATTTTTAAAT+AGG | - | chr8_4:47563344-47563363 | None:intergenic | 20.0% |
| !!! | TTATGTTTTAATTTTTGTGC+AGG | + | chr8_4:47563593-47563612 | Msa1329210:intron | 20.0% |
| !!! | ATTTGGTTGATAATAAGTTA+AGG | - | chr8_4:47563841-47563860 | None:intergenic | 20.0% |
| !! | TTGATAAAATATAATCAGTG+TGG | + | chr8_4:47564235-47564254 | Msa1329210:intron | 20.0% |
| !! | CTTATTAGTATAACATACAA+TGG | + | chr8_4:47564300-47564319 | Msa1329210:intron | 20.0% |
| !! | ACATTATGTTGAACATATAT+TGG | - | chr8_4:47564664-47564683 | None:intergenic | 20.0% |
| !!! | GATGATTGTTTTAGTATTTT+TGG | + | chr8_4:47564827-47564846 | Msa1329210:three_prime_UTR | 20.0% |
| ! | TTTATATATTACTCCGATCA+TGG | + | chr8_4:47562496-47562515 | Msa1329210:CDS | 25.0% |
| ! | TCATATGATCAACGTATATT+TGG | - | chr8_4:47562653-47562672 | None:intergenic | 25.0% |
| ! | AAATCCATAGCATATACATA+CGG | - | chr8_4:47562777-47562796 | None:intergenic | 25.0% |
| !! | TTTTTACAAGCATCATTTAC+CGG | - | chr8_4:47562865-47562884 | None:intergenic | 25.0% |
| ! | ACATAAACATTAAGATCCTT+TGG | - | chr8_4:47562987-47563006 | None:intergenic | 25.0% |
| ! | TAATTTGGTCCTTGAATTTA+GGG | - | chr8_4:47563220-47563239 | None:intergenic | 25.0% |
| !! | ACTTTCACTTGTTAATTACT+CGG | - | chr8_4:47563379-47563398 | None:intergenic | 25.0% |
| ! | AATTACAACAACTATGCATT+AGG | + | chr8_4:47563633-47563652 | Msa1329210:CDS | 25.0% |
| !! | TTGATAATAAGTTAAGGTTG+AGG | - | chr8_4:47563835-47563854 | None:intergenic | 25.0% |
| ! | ATCTAATCTCTTATACTGAA+AGG | - | chr8_4:47563913-47563932 | None:intergenic | 25.0% |
| ! | TAAGAGATTAGATCATCAAA+CGG | + | chr8_4:47563920-47563939 | Msa1329210:CDS | 25.0% |
| ! | AAACATAGGAATCATTTAGA+TGG | + | chr8_4:47563984-47564003 | Msa1329210:CDS | 25.0% |
| ! | TTATGTTGAACATATATTGG+AGG | - | chr8_4:47564661-47564680 | None:intergenic | 25.0% |
| ! | AACAGTTTCTACTTTATCTT+AGG | - | chr8_4:47564727-47564746 | None:intergenic | 25.0% |
| ! | TAAGATAAAGTAGAAACTGT+TGG | + | chr8_4:47564726-47564745 | Msa1329210:three_prime_UTR | 25.0% |
| ! | AAGATAAAGTAGAAACTGTT+GGG | + | chr8_4:47564727-47564746 | Msa1329210:three_prime_UTR | 25.0% |
| CTTATTCTCTATTTATCTGC+AGG | + | chr8_4:47562357-47562376 | Msa1329210:CDS | 30.0% | |
| CATAACTAATCCTTTGAGTA+GGG | + | chr8_4:47562585-47562604 | Msa1329210:intron | 30.0% | |
| ACATCAAAAAGAGAATCACT+TGG | - | chr8_4:47562738-47562757 | None:intergenic | 30.0% | |
| ! | AGTGATTCTCTTTTTGATGT+AGG | + | chr8_4:47562738-47562757 | Msa1329210:intron | 30.0% |
| ! | GTGATTCTCTTTTTGATGTA+GGG | + | chr8_4:47562739-47562758 | Msa1329210:intron | 30.0% |
| GTAATTTGGTCCTTGAATTT+AGG | - | chr8_4:47563221-47563240 | None:intergenic | 30.0% | |
| ! | TAAGTCGATTGATCATGTTT+TGG | + | chr8_4:47563398-47563417 | Msa1329210:intron | 30.0% |
| ACACAATCTAAAAAGGGAAA+CGG | + | chr8_4:47563467-47563486 | Msa1329210:CDS | 30.0% | |
| GGTGAAACAACAATACAAAT+CGG | + | chr8_4:47563488-47563507 | Msa1329210:CDS | 30.0% | |
| AACAACAATACAAATCGGTA+AGG | + | chr8_4:47563493-47563512 | Msa1329210:intron | 30.0% | |
| ! | TTTTTGTGCAGGTTAAAGAA+CGG | + | chr8_4:47563604-47563623 | Msa1329210:intron | 30.0% |
| ! | TAGCTTTTCATCTGTAATGT+TGG | - | chr8_4:47563685-47563704 | None:intergenic | 30.0% |
| GAAAAGCTATATTTGTACCA+AGG | + | chr8_4:47563696-47563715 | Msa1329210:CDS | 30.0% | |
| TGACAAACTAGGATCTAAAA+TGG | + | chr8_4:47563755-47563774 | Msa1329210:CDS | 30.0% | |
| ATAAAATCTCTGCATCTCTT+TGG | - | chr8_4:47563791-47563810 | None:intergenic | 30.0% | |
| ! | ATGCAGAGATTTTATTCATG+TGG | + | chr8_4:47563796-47563815 | Msa1329210:CDS | 30.0% |
| ! | TGCAGAGATTTTATTCATGT+GGG | + | chr8_4:47563797-47563816 | Msa1329210:CDS | 30.0% |
| ! | GATTTTATTCATGTGGGAAA+TGG | + | chr8_4:47563803-47563822 | Msa1329210:CDS | 30.0% |
| CAATCATTTGAACAAGGATT+TGG | - | chr8_4:47563858-47563877 | None:intergenic | 30.0% | |
| ! | TTGATTGGAGTTTTACTGTT+TGG | + | chr8_4:47564017-47564036 | Msa1329210:CDS | 30.0% |
| ATTGGGAATGCTTAAAATCA+AGG | + | chr8_4:47564102-47564121 | Msa1329210:intron | 30.0% | |
| TTGGGAATGCTTAAAATCAA+GGG | + | chr8_4:47564103-47564122 | Msa1329210:intron | 30.0% | |
| TAAGTTATGAAGACAGATGT+CGG | - | chr8_4:47564284-47564303 | None:intergenic | 30.0% | |
| TTATAGTGCTTAACTTTGTG+TGG | + | chr8_4:47564527-47564546 | Msa1329210:exon | 30.0% | |
| ! | GTAATTTGCAATTGAGAGAA+TGG | + | chr8_4:47564795-47564814 | Msa1329210:three_prime_UTR | 30.0% |
| ATTTATCTGCAGGATTACAC+TGG | + | chr8_4:47562367-47562386 | Msa1329210:CDS | 35.0% | |
| TGGAGACAAGAGTAAAGTAA+AGG | + | chr8_4:47562429-47562448 | Msa1329210:CDS | 35.0% | |
| GGAGACAAGAGTAAAGTAAA+GGG | + | chr8_4:47562430-47562449 | Msa1329210:CDS | 35.0% | |
| ATATATTACTCCGATCATGG+AGG | + | chr8_4:47562499-47562518 | Msa1329210:CDS | 35.0% | |
| GCATAACTAATCCTTTGAGT+AGG | + | chr8_4:47562584-47562603 | Msa1329210:intron | 35.0% | |
| TGTAATTCTACCCTACTCAA+AGG | - | chr8_4:47562598-47562617 | None:intergenic | 35.0% | |
| !! | TGATGTGACTAGTTTATCCT+TGG | + | chr8_4:47562699-47562718 | Msa1329210:intron | 35.0% |
| !! | GATGTGACTAGTTTATCCTT+GGG | + | chr8_4:47562700-47562719 | Msa1329210:intron | 35.0% |
| GCATATACATACGGCATATT+TGG | - | chr8_4:47562768-47562787 | None:intergenic | 35.0% | |
| TATGCCGTATGTATATGCTA+TGG | + | chr8_4:47562770-47562789 | Msa1329210:CDS | 35.0% | |
| TTGAAGAAGAAACATGCATC+TGG | + | chr8_4:47562807-47562826 | Msa1329210:CDS | 35.0% | |
| ATCTGGAGGTTACAAAAAGA+TGG | + | chr8_4:47562824-47562843 | Msa1329210:CDS | 35.0% | |
| ! | GTGTGATTTTGTGCTTGTAT+AGG | + | chr8_4:47562911-47562930 | Msa1329210:intron | 35.0% |
| TACATTGAAGCTTGTGAAAG+TGG | + | chr8_4:47562939-47562958 | Msa1329210:CDS | 35.0% | |
| !! | TTTGTATAGTGTTGCTTGGA+TGG | + | chr8_4:47563103-47563122 | Msa1329210:CDS | 35.0% |
| TGTTTGCATCCCTAAATTCA+AGG | + | chr8_4:47563208-47563227 | Msa1329210:intron | 35.0% | |
| ! | TCACTTGTTAATTACTCGGT+AGG | - | chr8_4:47563375-47563394 | None:intergenic | 35.0% |
| CGAGTCACACAATCTAAAAA+GGG | + | chr8_4:47563461-47563480 | Msa1329210:CDS | 35.0% | |
| AGTATCCCTATTAGCATTTC+AGG | + | chr8_4:47563543-47563562 | Msa1329210:intron | 35.0% | |
| CTTCTCCTGAAATGCTAATA+GGG | - | chr8_4:47563551-47563570 | None:intergenic | 35.0% | |
| TCTTCTCCTGAAATGCTAAT+AGG | - | chr8_4:47563552-47563571 | None:intergenic | 35.0% | |
| ACTGCACAATCATTTGAACA+AGG | - | chr8_4:47563864-47563883 | None:intergenic | 35.0% | |
| AGAAATCCTTGAGAAGATTG+CGG | + | chr8_4:47563953-47563972 | Msa1329210:CDS | 35.0% | |
| TTACTGTTTGGTCCAACAAA+AGG | + | chr8_4:47564029-47564048 | Msa1329210:CDS | 35.0% | |
| ! | AGAACTGAAGAACCTTTTGT+TGG | - | chr8_4:47564044-47564063 | None:intergenic | 35.0% |
| AAAAGGTTCTTCAGTTCTAC+AGG | + | chr8_4:47564046-47564065 | Msa1329210:CDS | 35.0% | |
| !! | TCTACCTCTTGTTGATGATT+GGG | + | chr8_4:47564085-47564104 | Msa1329210:intron | 35.0% |
| TACGTTATCGATGTTCGATT+TGG | + | chr8_4:47564326-47564345 | Msa1329210:intron | 35.0% | |
| !!! | GATGTTCGATTTGGTTTTGT+AGG | + | chr8_4:47564335-47564354 | Msa1329210:intron | 35.0% |
| !!! | TCGATTTGGTTTTGTAGGTT+CGG | + | chr8_4:47564340-47564359 | Msa1329210:intron | 35.0% |
| CTATTACATCCATCAAACAG+AGG | + | chr8_4:47564504-47564523 | Msa1329210:CDS | 35.0% | |
| TTAGTTGTGAAAGAGTAAGC+AGG | + | chr8_4:47564697-47564716 | Msa1329210:three_prime_UTR | 35.0% | |
| TAAAGTAGAAACTGTTGGGT+AGG | + | chr8_4:47564731-47564750 | Msa1329210:three_prime_UTR | 35.0% | |
| TTTGCAATTGAGAGAATGGT+TGG | + | chr8_4:47564799-47564818 | Msa1329210:three_prime_UTR | 35.0% | |
| TTGCAATTGAGAGAATGGTT+GGG | + | chr8_4:47564800-47564819 | Msa1329210:three_prime_UTR | 35.0% | |
| AACCTATACGCTGTCATTCT+TGG | + | chr8_4:47562409-47562428 | Msa1329210:CDS | 40.0% | |
| GACAAGAGTAAAGTAAAGGG+TGG | + | chr8_4:47562433-47562452 | Msa1329210:CDS | 40.0% | |
| AGTAAAGTAAAGGGTGGAAG+TGG | + | chr8_4:47562439-47562458 | Msa1329210:CDS | 40.0% | |
| TCAACAGCAAATCCGAAGAT+AGG | + | chr8_4:47562470-47562489 | Msa1329210:CDS | 40.0% | |
| AATTGACTGACCAAGAACTC+CGG | - | chr8_4:47562527-47562546 | None:intergenic | 40.0% | |
| ! | TGGAACTTTTTACGTGCAAG+AGG | - | chr8_4:47562633-47562652 | None:intergenic | 40.0% |
| AAGAAGAAACATGCATCTGG+AGG | + | chr8_4:47562810-47562829 | Msa1329210:CDS | 40.0% | |
| TGAAAGTGGTAGCATGTTTG+AGG | + | chr8_4:47562953-47562972 | Msa1329210:CDS | 40.0% | |
| GAAAGTGGTAGCATGTTTGA+GGG | + | chr8_4:47562954-47562973 | Msa1329210:CDS | 40.0% | |
| CAATGCACAAGAGAGTAGTT+GGG | + | chr8_4:47563019-47563038 | Msa1329210:CDS | 40.0% | |
| AATGCACAAGAGAGTAGTTG+GGG | + | chr8_4:47563020-47563039 | Msa1329210:CDS | 40.0% | |
| CAACACTATACAAATCCCCA+AGG | - | chr8_4:47563097-47563116 | None:intergenic | 40.0% | |
| ! | GGGATTTGTATAGTGTTGCT+TGG | + | chr8_4:47563099-47563118 | Msa1329210:CDS | 40.0% |
| CTCGCTGCATAATACAAAAC+AGG | - | chr8_4:47563445-47563464 | None:intergenic | 40.0% | |
| GCGAGTCACACAATCTAAAA+AGG | + | chr8_4:47563460-47563479 | Msa1329210:intron | 40.0% | |
| GGTTCTCATGTGATGCAATA+TGG | + | chr8_4:47563654-47563673 | Msa1329210:CDS | 40.0% | |
| ! | GATCCTAGTTTGTCATTGTG+AGG | - | chr8_4:47563750-47563769 | None:intergenic | 40.0% |
| ! | GAATCATTTAGATGGTAGCG+TGG | + | chr8_4:47563992-47564011 | Msa1329210:CDS | 40.0% |
| !! | GTCTACCTCTTGTTGATGAT+TGG | + | chr8_4:47564084-47564103 | Msa1329210:intron | 40.0% |
| CATTCCCAATCATCAACAAG+AGG | - | chr8_4:47564092-47564111 | None:intergenic | 40.0% | |
| ! | GGTTGTTTGAAACTCACTGT+GGG | + | chr8_4:47564361-47564380 | Msa1329210:CDS | 40.0% |
| TTTGCGAACATTTGCAACAG+CGG | + | chr8_4:47564420-47564439 | Msa1329210:CDS | 40.0% | |
| ! | TTCTGAGGATTCTATGGAGA+AGG | + | chr8_4:47564446-47564465 | Msa1329210:CDS | 40.0% |
| GCACTATAACCTCTGTTTGA+TGG | - | chr8_4:47564516-47564535 | None:intergenic | 40.0% | |
| ACTTTGTGTGGTACACTACA+TGG | + | chr8_4:47564539-47564558 | Msa1329210:exon | 40.0% | |
| CTCGTCAATTGTGAAATTGC+TGG | + | chr8_4:47564595-47564614 | Msa1329210:three_prime_UTR | 40.0% | |
| ! | ACATATATTGGAGGCGCATA+GGG | - | chr8_4:47564652-47564671 | None:intergenic | 40.0% |
| ! | AACATATATTGGAGGCGCAT+AGG | - | chr8_4:47564653-47564672 | None:intergenic | 40.0% |
| CAAGCACATCACAAGAAATG+TGG | + | chr8_4:47564769-47564788 | Msa1329210:three_prime_UTR | 40.0% | |
| CTCCAAGAATGACAGCGTAT+AGG | - | chr8_4:47562414-47562433 | None:intergenic | 45.0% | |
| ATTGACTGACCAAGAACTCC+GGG | - | chr8_4:47562526-47562545 | None:intergenic | 45.0% | |
| !! | TTGGCTGTTATTTCTGCCCA+AGG | - | chr8_4:47562719-47562738 | None:intergenic | 45.0% |
| CCAACTACTCTCTTGTGCAT+TGG | - | chr8_4:47563021-47563040 | None:intergenic | 45.0% | |
| CCAATGCACAAGAGAGTAGT+TGG | + | chr8_4:47563018-47563037 | Msa1329210:CDS | 45.0% | |
| CAGAGTACATCACTTGCCTT+GGG | + | chr8_4:47563078-47563097 | Msa1329210:CDS | 45.0% | |
| AGAGTACATCACTTGCCTTG+GGG | + | chr8_4:47563079-47563098 | Msa1329210:CDS | 45.0% | |
| CGGTAGGTCTCTGAACTATT+TGG | - | chr8_4:47563359-47563378 | None:intergenic | 45.0% | |
| !! | CCAAGGTTTTGATCCTGCAA+CGG | + | chr8_4:47563713-47563732 | Msa1329210:CDS | 45.0% |
| GTTTGTCATTGTGAGGAGGA+AGG | - | chr8_4:47563743-47563762 | None:intergenic | 45.0% | |
| ! | CCTAGTTTGTCATTGTGAGG+AGG | - | chr8_4:47563747-47563766 | None:intergenic | 45.0% |
| CCTCCTCACAATGACAAACT+AGG | + | chr8_4:47563744-47563763 | Msa1329210:CDS | 45.0% | |
| ! | GATGGTAGCGTGGAATTGAT+TGG | + | chr8_4:47564002-47564021 | Msa1329210:CDS | 45.0% |
| TCATCAACAAGAGGTAGACC+AGG | - | chr8_4:47564083-47564102 | None:intergenic | 45.0% | |
| ! | CCTGAAGGCATGTCTAGTAT+CGG | + | chr8_4:47564182-47564201 | Msa1329210:intron | 45.0% |
| ! | CGGTTGTTTGAAACTCACTG+TGG | + | chr8_4:47564360-47564379 | Msa1329210:CDS | 45.0% |
| ! | CGGTGTTTCTGAGGATTCTA+TGG | + | chr8_4:47564440-47564459 | Msa1329210:CDS | 45.0% |
| AAGGCATGTATAGCAGCATG+TGG | + | chr8_4:47564465-47564484 | Msa1329210:CDS | 45.0% | |
| CATGTATAGCAGCATGTGGT+GGG | + | chr8_4:47564469-47564488 | Msa1329210:CDS | 45.0% | |
| ATTGAGAGAATGGTTGGGTG+AGG | + | chr8_4:47564805-47564824 | Msa1329210:three_prime_UTR | 45.0% | |
| !!! | TTTTAAATAATTTTGTAATT+TGG | - | chr8_4:47563235-47563254 | None:intergenic | 5.0% |
| AGTAAAGGGTGGAAGTGGCA+AGG | + | chr8_4:47562444-47562463 | Msa1329210:CDS | 50.0% | |
| TTGACTGACCAAGAACTCCG+GGG | - | chr8_4:47562525-47562544 | None:intergenic | 50.0% | |
| !! | GTTTGAGGGTGTCATGCCAA+AGG | + | chr8_4:47562968-47562987 | Msa1329210:CDS | 50.0% |
| AGTTGGGGAACTTACTGTCC+TGG | + | chr8_4:47563035-47563054 | Msa1329210:CDS | 50.0% | |
| ! | CAAGTGATGTACTCTGGAGG+TGG | - | chr8_4:47563074-47563093 | None:intergenic | 50.0% |
| AGGCAAGTGATGTACTCTGG+AGG | - | chr8_4:47563077-47563096 | None:intergenic | 50.0% | |
| CCAAGGCAAGTGATGTACTC+TGG | - | chr8_4:47563080-47563099 | None:intergenic | 50.0% | |
| CCAGAGTACATCACTTGCCT+TGG | + | chr8_4:47563077-47563096 | Msa1329210:CDS | 50.0% | |
| !! | GTGTTGCTTGGATGGAAGAC+AGG | + | chr8_4:47563111-47563130 | Msa1329210:CDS | 50.0% |
| CCGTTGCAGGATCAAAACCT+TGG | - | chr8_4:47563716-47563735 | None:intergenic | 50.0% | |
| CCTTGAGAAGATTGCGGAGA+CGG | + | chr8_4:47563959-47563978 | Msa1329210:CDS | 50.0% | |
| TTGCGGAGACGGTGAAACAT+AGG | + | chr8_4:47563970-47563989 | Msa1329210:CDS | 50.0% | |
| CTACAGGCTCTTAGAGAACC+TGG | + | chr8_4:47564062-47564081 | Msa1329210:CDS | 50.0% | |
| AGCACGACACTTTCACCTGA+AGG | + | chr8_4:47564167-47564186 | Msa1329210:intron | 50.0% | |
| CCGATACTAGACATGCCTTC+AGG | - | chr8_4:47564185-47564204 | None:intergenic | 50.0% | |
| TGTGGGTCACTGACACAGTA+TGG | + | chr8_4:47564378-47564397 | Msa1329210:CDS | 50.0% | |
| GTGGGTCACTGACACAGTAT+GGG | + | chr8_4:47564379-47564398 | Msa1329210:CDS | 50.0% | |
| ! | TTGCAACAGCGGTGTTTCTG+AGG | + | chr8_4:47564431-47564450 | Msa1329210:CDS | 50.0% |
| GCATGTATAGCAGCATGTGG+TGG | + | chr8_4:47564468-47564487 | Msa1329210:CDS | 50.0% | |
| GGGAACTTACTGTCCTGGAG+TGG | + | chr8_4:47563040-47563059 | Msa1329210:CDS | 55.0% | |
| ! | ATGTACTCTGGAGGTGGAGC+AGG | - | chr8_4:47563068-47563087 | None:intergenic | 55.0% |
| CCGTCTCCGCAATCTTCTCA+AGG | - | chr8_4:47563962-47563981 | None:intergenic | 55.0% | |
| TACTCCGATCATGGAGGCCC+CGG | + | chr8_4:47562505-47562524 | Msa1329210:CDS | 60.0% | |
| AACTCCGGGGCCTCCATGAT+CGG | - | chr8_4:47562512-47562531 | None:intergenic | 60.0% | |
| GGAGGAAGGTTCACCGTTGC+AGG | - | chr8_4:47563729-47563748 | None:intergenic | 60.0% | |
| CATGGAGGCCCCGGAGTTCT+TGG | + | chr8_4:47562514-47562533 | Msa1329210:CDS | 65.0% | |
| GGTGGAGCAGGTTCCACTCC+AGG | - | chr8_4:47563056-47563075 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 47562355 | 47564912 | 47562355 | ID=Msa1329210;Name=Msa1329210 |
| chr8_4 | mRNA | 47562355 | 47564912 | 47562355 | ID=Msa1329210-mRNA-1;Parent=Msa1329210;Name=Msa1329210-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.83|0.71|1|1|1|7|373|361 |
| chr8_4 | exon | 47562355 | 47562535 | 47562355 | ID=Msa1329210-mRNA-1:exon:13628;Parent=Msa1329210-mRNA-1 |
| chr8_4 | exon | 47562760 | 47562845 | 47562760 | ID=Msa1329210-mRNA-1:exon:13629;Parent=Msa1329210-mRNA-1 |
| chr8_4 | exon | 47562933 | 47563132 | 47562933 | ID=Msa1329210-mRNA-1:exon:13630;Parent=Msa1329210-mRNA-1 |
| chr8_4 | exon | 47563461 | 47563509 | 47563461 | ID=Msa1329210-mRNA-1:exon:13631;Parent=Msa1329210-mRNA-1 |
| chr8_4 | exon | 47563615 | 47563824 | 47563615 | ID=Msa1329210-mRNA-1:exon:13632;Parent=Msa1329210-mRNA-1 |
| chr8_4 | exon | 47563918 | 47564094 | 47563918 | ID=Msa1329210-mRNA-1:exon:13633;Parent=Msa1329210-mRNA-1 |
| chr8_4 | exon | 47564357 | 47564912 | 47564357 | ID=Msa1329210-mRNA-1:exon:13634;Parent=Msa1329210-mRNA-1 |
| chr8_4 | CDS | 47562355 | 47562535 | 47562355 | ID=Msa1329210-mRNA-1:cds;Parent=Msa1329210-mRNA-1 |
| chr8_4 | CDS | 47562760 | 47562845 | 47562760 | ID=Msa1329210-mRNA-1:cds;Parent=Msa1329210-mRNA-1 |
| chr8_4 | CDS | 47562933 | 47563132 | 47562933 | ID=Msa1329210-mRNA-1:cds;Parent=Msa1329210-mRNA-1 |
| chr8_4 | CDS | 47563461 | 47563509 | 47563461 | ID=Msa1329210-mRNA-1:cds;Parent=Msa1329210-mRNA-1 |
| chr8_4 | CDS | 47563615 | 47563824 | 47563615 | ID=Msa1329210-mRNA-1:cds;Parent=Msa1329210-mRNA-1 |
| chr8_4 | CDS | 47563918 | 47564094 | 47563918 | ID=Msa1329210-mRNA-1:cds;Parent=Msa1329210-mRNA-1 |
| chr8_4 | CDS | 47564357 | 47564539 | 47564357 | ID=Msa1329210-mRNA-1:cds;Parent=Msa1329210-mRNA-1 |
| chr8_4 | three_prime_UTR | 47564540 | 47564912 | 47564540 | ID=Msa1329210-mRNA-1:three_prime_utr;Parent=Msa1329210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
