AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1416130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416130 MtrunA17_Chr3g0139331 90.625 352 23 6 12 359 1 346 0.0 597
Msa1416130 MtrunA17_Chr1g0147421 60.054 368 124 12 1 359 8 361 1.22e-134 388
Msa1416130 MtrunA17_Chr6g0484441 71.023 176 38 3 19 184 2 174 8.87e-86 262
Msa1416130 MtrunA17_Chr2g0316971 71.338 157 42 1 22 175 23 179 9.39e-81 251
Msa1416130 MtrunA17_Chr4g0060931 64.740 173 56 2 8 177 3 173 2.71e-78 244
Msa1416130 MtrunA17_Chr3g0091921 70.625 160 42 3 21 177 15 172 3.19e-76 237
Msa1416130 MtrunA17_Chr6g0453451 62.778 180 56 5 1 177 5 176 1.62e-71 226
Msa1416130 MtrunA17_Chr7g0253011 53.738 214 81 6 17 221 10 214 1.31e-70 225
Msa1416130 MtrunA17_Chr6g0461661 54.922 193 76 2 22 211 18 202 2.82e-69 221
Msa1416130 MtrunA17_Chr7g0217721 52.404 208 73 4 25 216 22 219 5.60e-67 215
Msa1416130 MtrunA17_Chr3g0144271 64.336 143 50 1 10 151 11 153 6.10e-64 209
Msa1416130 MtrunA17_Chr7g0263931 45.662 219 106 3 12 225 1 211 1.83e-60 197
Msa1416130 MtrunA17_Chr7g0217711 66.418 134 43 1 25 158 22 153 6.11e-60 191
Msa1416130 MtrunA17_Chr1g0183741 54.967 151 65 1 21 171 9 156 5.12e-59 192
Msa1416130 MtrunA17_Chr7g0261411 41.155 277 138 6 21 284 9 273 8.79e-59 192
Msa1416130 MtrunA17_Chr2g0312321 58.599 157 55 5 19 171 8 158 3.28e-58 191
Msa1416130 MtrunA17_Chr2g0309331 50.602 166 77 3 16 178 4 167 1.78e-57 190
Msa1416130 MtrunA17_Chr2g0318101 48.588 177 73 2 15 176 8 181 2.87e-57 190
Msa1416130 MtrunA17_Chr3g0124761 52.601 173 75 3 17 185 2 171 3.74e-57 187
Msa1416130 MtrunA17_Chr8g0359921 53.179 173 75 3 21 189 13 183 1.83e-56 187
Msa1416130 MtrunA17_Chr4g0017921 56.209 153 60 3 22 171 8 156 4.83e-56 186
Msa1416130 MtrunA17_Chr4g0042561 51.176 170 74 3 12 176 1 166 1.17e-55 183
Msa1416130 MtrunA17_Chr5g0417791 53.012 166 69 3 22 181 3 165 1.25e-55 182
Msa1416130 MtrunA17_Chr2g0318081 55.000 160 65 3 21 177 15 170 1.29e-55 185
Msa1416130 MtrunA17_Chr7g0252971 50.296 169 72 2 16 172 2 170 2.91e-55 184
Msa1416130 MtrunA17_Chr5g0398971 52.941 153 68 2 22 171 7 158 3.21e-55 184
Msa1416130 MtrunA17_Chr4g0047841 51.412 177 62 4 22 174 15 191 8.44e-55 183
Msa1416130 MtrunA17_Chr5g0405211 52.564 156 68 3 19 171 5 157 1.05e-54 183
Msa1416130 MtrunA17_Chr4g0056541 54.248 153 64 3 22 171 7 156 1.11e-54 183
Msa1416130 MtrunA17_Chr4g0018391 53.595 153 65 3 22 171 7 156 1.60e-54 182
Msa1416130 MtrunA17_Chr6g0481091 55.484 155 64 3 22 173 6 158 4.32e-54 178
Msa1416130 MtrunA17_Chr8g0346001 49.711 173 72 3 12 171 5 175 4.84e-54 183
Msa1416130 MtrunA17_Chr7g0214071 48.649 185 81 4 19 200 12 185 1.18e-53 177
Msa1416130 MtrunA17_Chr2g0326361 51.553 161 73 2 21 176 13 173 1.65e-53 179
Msa1416130 MtrunA17_Chr8g0384721 52.469 162 69 3 22 178 7 165 5.94e-53 176
Msa1416130 MtrunA17_Chr2g0309891 55.414 157 62 4 21 172 5 158 9.88e-53 177
Msa1416130 MtrunA17_Chr3g0109821 55.769 156 63 3 21 172 5 158 2.14e-52 184
Msa1416130 MtrunA17_Chr5g0433781 54.839 155 65 3 21 172 5 157 3.44e-52 183
Msa1416130 MtrunA17_Chr1g0200561 42.718 206 101 4 19 210 16 218 5.69e-52 176
Msa1416130 MtrunA17_Chr8g0372121 40.367 218 114 6 19 233 3 207 1.14e-51 174
Msa1416130 MtrunA17_Chr3g0092671 45.957 235 100 8 24 248 7 224 1.19e-51 179
Msa1416130 MtrunA17_Chr3g0130731 50.000 164 75 3 19 178 4 164 1.99e-51 172
Msa1416130 MtrunA17_Chr8g0361731 48.864 176 77 3 12 174 1 176 4.14e-50 172
Msa1416130 MtrunA17_Chr1g0197361 49.223 193 81 6 24 211 10 190 4.75e-50 176
Msa1416130 MtrunA17_Chr6g0453131 48.023 177 77 3 10 174 3 176 9.59e-49 168
Msa1416130 MtrunA17_Chr5g0417001 46.857 175 81 2 12 174 1 175 4.18e-48 167
Msa1416130 MtrunA17_Chr5g0400461 40.517 232 112 6 21 228 5 234 5.03e-47 162
Msa1416130 MtrunA17_Chr4g0076731 48.718 156 78 2 18 173 50 203 2.20e-46 163
Msa1416130 MtrunA17_Chr5g0428991 41.633 245 131 8 22 258 25 265 4.60e-46 166
Msa1416130 MtrunA17_Chr3g0128151 55.195 154 64 3 21 171 21 172 6.70e-46 165
Msa1416130 MtrunA17_Chr3g0130101 49.045 157 75 3 24 177 9 163 1.46e-45 159
Msa1416130 MtrunA17_Chr5g0442771 41.081 185 98 2 18 191 14 198 2.05e-44 155
Msa1416130 MtrunA17_Chr4g0054791 46.199 171 78 4 21 182 5 170 9.09e-44 153
Msa1416130 MtrunA17_Chr1g0197351 48.171 164 74 3 21 175 41 202 1.26e-43 157
Msa1416130 MtrunA17_Chr3g0128111 53.333 150 65 3 25 171 45 192 1.66e-43 150
Msa1416130 MtrunA17_Chr1g0201021 50.000 158 72 4 24 177 21 175 5.40e-43 157
Msa1416130 MtrunA17_Chr8g0364791 45.283 159 82 3 22 177 6 162 2.90e-42 152
Msa1416130 MtrunA17_Chr4g0038751 45.283 159 82 2 19 176 12 166 1.47e-41 147
Msa1416130 MtrunA17_Chr3g0113001 63.063 111 35 2 71 177 14 122 2.81e-41 146
Msa1416130 MtrunA17_Chr2g0311651 43.503 177 83 4 17 177 17 192 6.46e-41 145
Msa1416130 MtrunA17_Chr8g0385991 40.588 170 93 2 22 185 14 181 9.85e-41 143
Msa1416130 MtrunA17_Chr8g0384201 43.396 159 85 3 22 177 6 162 2.74e-40 148
Msa1416130 MtrunA17_Chr2g0311661 41.398 186 93 4 8 177 6 191 5.98e-40 142
Msa1416130 MtrunA17_Chr3g0131911 42.593 162 82 3 22 174 14 173 3.56e-36 131
Msa1416130 MtrunA17_Chr8g0345671 49.333 150 68 6 22 168 11 155 3.59e-36 135
Msa1416130 MtrunA17_Chr8g0345691 44.667 150 75 5 22 168 12 156 1.26e-33 129
Msa1416130 MtrunA17_Chr4g0026141 40.237 169 91 4 19 178 2 169 1.28e-33 125
Msa1416130 MtrunA17_Chr3g0113031 59.000 100 34 2 83 177 1 98 1.62e-32 122
Msa1416130 MtrunA17_Chr4g0050701 37.427 171 87 3 22 180 11 173 2.43e-32 119
Msa1416130 MtrunA17_Chr2g0321631 41.975 162 83 6 23 174 5 165 3.16e-32 121
Msa1416130 MtrunA17_Chr2g0321741 35.882 170 89 4 41 198 11 172 1.48e-31 122
Msa1416130 MtrunA17_Chr8g0345711 42.466 146 78 4 19 161 9 151 2.56e-31 116
Msa1416130 MtrunA17_Chr7g0266701 36.257 171 96 6 20 178 2 171 3.49e-29 113
Msa1416130 MtrunA17_Chr8g0345701 43.750 144 61 5 21 147 6 146 4.21e-29 110
Msa1416130 MtrunA17_Chr8g0345731 40.132 152 84 5 22 168 24 173 5.73e-28 107
Msa1416130 MtrunA17_Chr8g0345721 36.585 164 66 4 21 147 29 191 3.00e-26 104
Msa1416130 MtrunA17_Chr7g0243371 51.948 77 37 0 75 151 17 93 6.28e-24 95.1
Msa1416130 MtrunA17_Chr8g0384351 40.000 150 69 5 22 171 10 138 1.06e-23 96.7
Msa1416130 MtrunA17_Chr8g0345741 40.336 119 67 3 33 148 2 119 1.09e-22 93.2
Msa1416130 MtrunA17_Chr7g0251661 34.559 136 83 5 16 149 4 135 1.45e-21 90.1
Msa1416130 MtrunA17_Chr3g0130321 35.714 196 95 9 17 192 2 186 6.77e-21 89.7
Msa1416130 MtrunA17_Chr7g0251651 33.803 142 85 6 10 149 9 143 1.29e-17 80.1
Msa1416130 MtrunA17_Chr7g0251671 30.147 136 89 4 16 149 4 135 1.02e-16 77.0
Msa1416130 MtrunA17_Chr3g0113011 61.224 49 19 0 22 70 19 67 2.25e-16 73.2
Msa1416130 MtrunA17_Chr3g0113041 60.000 45 18 0 26 70 23 67 3.82e-14 67.0
Msa1416130 MtrunA17_Chr4g0040541 30.303 165 92 6 22 169 48 206 1.88e-13 70.1
Msa1416130 MtrunA17_Chr2g0324961 32.919 161 83 7 9 149 34 189 2.24e-13 69.7
Msa1416130 MtrunA17_Chr2g0282871 30.726 179 101 7 8 169 38 210 1.31e-12 67.8
Msa1416130 MtrunA17_Chr8g0367761 29.381 194 112 8 8 182 53 240 1.36e-12 67.0
Msa1416130 MtrunA17_Chr7g0274971 28.994 169 105 7 28 187 11 173 3.48e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416130 AT2G24430.2 49.718 354 124 8 13 357 7 315 7.37e-102 303
Msa1416130 AT2G24430.1 49.718 354 124 8 13 357 7 315 7.37e-102 303
Msa1416130 AT3G18400.1 72.956 159 41 1 19 177 2 158 2.52e-84 258
Msa1416130 AT5G53950.1 68.519 162 48 1 14 172 9 170 4.77e-80 249
Msa1416130 AT3G15170.1 68.987 158 46 1 19 173 17 174 5.01e-77 239
Msa1416130 AT5G61430.1 67.683 164 48 2 22 182 16 177 7.56e-77 240
Msa1416130 AT1G76420.1 46.743 261 125 3 10 258 7 265 3.55e-75 236
Msa1416130 AT5G07680.2 65.854 164 51 2 22 182 3 164 4.17e-75 235
Msa1416130 AT5G07680.1 65.854 164 51 2 22 182 17 178 7.01e-75 235
Msa1416130 AT5G39610.1 61.538 182 63 3 1 179 1 178 1.24e-73 230
Msa1416130 AT5G18270.2 56.650 203 75 5 16 211 14 210 1.36e-72 229
Msa1416130 AT5G18270.1 56.158 203 76 5 16 211 14 210 4.86e-72 228
Msa1416130 AT3G04060.1 46.931 277 118 9 16 281 12 270 4.39e-69 220
Msa1416130 AT3G29035.1 58.791 182 68 3 1 177 1 180 2.76e-66 212
Msa1416130 AT2G18060.3 47.150 193 89 4 21 210 8 190 4.84e-59 195
Msa1416130 AT2G18060.1 47.150 193 89 4 21 210 8 190 4.84e-59 195
Msa1416130 AT3G12977.1 53.459 159 70 2 19 175 15 171 6.14e-59 192
Msa1416130 AT3G10500.1 58.537 164 63 3 17 177 4 165 7.64e-59 199
Msa1416130 AT4G27410.2 54.717 159 67 3 21 177 13 168 1.12e-57 189
Msa1416130 AT1G33280.1 49.065 214 89 8 22 219 8 217 1.81e-57 189
Msa1416130 AT5G04410.1 56.707 164 66 3 17 177 4 165 8.73e-57 194
Msa1416130 AT3G04070.2 53.488 172 65 4 21 179 9 178 1.50e-56 188
Msa1416130 AT1G69490.1 53.374 163 69 3 19 176 6 166 3.20e-56 185
Msa1416130 AT1G52890.1 52.663 169 77 2 21 188 13 179 3.61e-56 186
Msa1416130 AT4G10350.1 52.941 170 74 3 22 187 9 176 3.91e-56 187
Msa1416130 AT3G15500.1 54.321 162 71 2 21 181 13 172 8.58e-56 185
Msa1416130 AT4G36160.1 38.521 257 134 9 14 262 2 242 1.50e-55 186
Msa1416130 AT4G36160.3 38.521 257 134 9 14 262 2 242 1.50e-55 186
Msa1416130 AT4G36160.2 38.521 257 134 9 14 262 6 246 1.63e-55 186
Msa1416130 AT1G56010.2 50.867 173 76 4 10 175 5 175 1.83e-55 184
Msa1416130 AT1G01720.1 54.037 161 66 3 22 177 7 164 2.05e-55 183
Msa1416130 AT4G28530.1 52.410 166 60 2 22 171 10 172 2.20e-55 185
Msa1416130 AT1G12260.2 54.248 153 64 3 22 171 7 156 2.92e-55 184
Msa1416130 AT5G62380.2 50.556 180 77 4 22 198 7 177 2.94e-55 185
Msa1416130 AT5G62380.1 50.556 180 77 4 22 198 7 177 2.94e-55 185
Msa1416130 AT1G12260.1 54.248 153 64 3 22 171 7 156 4.04e-55 186
Msa1416130 AT3G17730.1 49.171 181 87 3 22 199 6 184 2.30e-54 179
Msa1416130 AT5G08790.1 53.012 166 69 3 19 178 4 166 3.38e-54 180
Msa1416130 AT1G61110.1 52.381 168 66 3 22 176 16 182 3.60e-54 181
Msa1416130 AT4G27410.3 50.000 176 66 4 21 177 13 185 3.65e-54 181
Msa1416130 AT3G04070.1 48.936 188 65 4 21 179 9 194 4.32e-54 182
Msa1416130 AT1G62700.1 53.595 153 65 3 22 171 7 156 6.13e-54 182
Msa1416130 AT1G62700.2 53.595 153 65 3 22 171 7 156 6.13e-54 182
Msa1416130 AT1G77450.1 48.087 183 83 4 17 195 5 179 6.25e-54 178
Msa1416130 AT5G63790.2 53.614 166 68 3 19 178 57 219 1.22e-53 180
Msa1416130 AT5G63790.1 53.614 166 68 3 19 178 47 209 1.37e-53 179
Msa1416130 AT1G79580.3 51.250 160 72 3 15 171 10 166 3.15e-53 180
Msa1416130 AT1G79580.5 51.250 160 72 3 15 171 10 166 3.15e-53 180
Msa1416130 AT1G79580.4 51.250 160 72 3 15 171 10 166 3.15e-53 180
Msa1416130 AT1G79580.2 51.250 160 72 3 15 171 10 166 3.15e-53 180
Msa1416130 AT1G79580.1 51.250 160 72 3 15 171 10 166 3.15e-53 180
Msa1416130 AT1G65910.1 53.750 160 69 3 21 177 5 162 3.25e-53 186
Msa1416130 AT1G71930.2 50.000 156 72 3 19 171 6 158 4.48e-53 178
Msa1416130 AT1G71930.1 50.000 156 72 3 19 171 6 158 4.48e-53 178
Msa1416130 AT5G66300.1 51.299 154 70 2 21 171 11 162 1.93e-52 176
Msa1416130 AT2G46770.1 48.023 177 73 4 12 171 6 180 2.01e-51 175
Msa1416130 AT3G61910.1 44.615 195 89 4 12 189 1 193 2.03e-51 174
Msa1416130 AT3G03200.1 54.839 155 64 3 21 171 5 157 3.32e-51 177
Msa1416130 AT5G17260.1 55.414 157 60 4 21 171 5 157 4.66e-51 177
Msa1416130 AT5G13180.1 50.000 156 75 1 22 177 14 166 5.55e-51 171
Msa1416130 AT3G15510.1 50.307 163 69 3 26 176 21 183 6.70e-51 174
Msa1416130 AT5G46590.1 53.896 154 66 3 22 171 6 158 2.36e-49 167
Msa1416130 AT1G33060.1 55.484 155 64 3 20 171 22 174 2.97e-49 175
Msa1416130 AT1G33060.2 55.484 155 64 3 20 171 22 174 3.31e-49 175
Msa1416130 AT3G10490.1 50.943 159 72 3 21 175 26 182 4.08e-49 165
Msa1416130 AT3G10480.1 52.201 159 70 3 21 175 26 182 5.65e-49 171
Msa1416130 AT4G35580.1 55.484 155 64 3 20 171 7 159 1.13e-48 171
Msa1416130 AT4G35580.3 55.484 155 64 3 20 171 7 159 1.39e-48 172
Msa1416130 AT4G35580.2 55.484 155 64 3 20 171 7 159 1.41e-48 172
Msa1416130 AT2G02450.1 50.303 165 79 3 24 188 53 214 1.78e-48 168
Msa1416130 AT2G02450.2 50.303 165 79 3 24 188 53 214 2.15e-48 168
Msa1416130 AT5G39820.1 41.837 196 86 3 1 174 5 194 2.34e-48 166
Msa1416130 AT3G10480.2 52.830 159 68 4 21 175 26 181 3.74e-48 169
Msa1416130 AT1G32770.1 43.750 176 83 3 19 180 13 186 4.72e-48 166
Msa1416130 AT4G17980.1 51.899 158 67 3 21 171 5 160 5.92e-48 163
Msa1416130 AT5G61430.2 65.217 115 35 2 71 182 2 114 7.61e-48 163
Msa1416130 AT1G26870.1 48.193 166 76 2 19 174 13 178 9.52e-48 167
Msa1416130 AT3G10490.2 50.943 159 72 3 21 175 26 182 1.05e-47 167
Msa1416130 AT4G17980.2 51.899 158 67 3 21 171 5 160 1.30e-47 163
Msa1416130 AT5G46590.2 57.778 135 54 2 22 154 6 139 1.49e-47 162
Msa1416130 AT1G54330.1 51.948 154 66 4 21 171 5 153 1.97e-47 163
Msa1416130 AT2G33480.1 50.000 154 71 3 22 174 15 163 5.25e-46 158
Msa1416130 AT1G34180.3 50.318 157 73 3 24 177 18 172 8.01e-46 162
Msa1416130 AT2G33480.2 50.000 156 66 4 22 174 15 161 8.10e-46 157
Msa1416130 AT5G09330.5 49.057 159 76 3 22 177 6 162 1.02e-45 163
Msa1416130 AT5G09330.2 49.057 159 76 3 22 177 6 162 1.02e-45 163
Msa1416130 AT5G09330.4 49.057 159 76 3 22 177 6 162 1.02e-45 163
Msa1416130 AT5G09330.3 49.057 159 76 3 22 177 6 162 1.02e-45 163
Msa1416130 AT5G09330.1 49.057 159 76 3 22 177 6 162 1.02e-45 163
Msa1416130 AT1G52880.1 50.625 160 68 3 26 174 21 180 1.69e-45 158
Msa1416130 AT2G43000.1 46.452 155 79 2 24 176 20 172 4.06e-45 156
Msa1416130 AT1G34190.1 50.318 157 73 3 24 177 18 172 4.07e-45 162
Msa1416130 AT5G64060.1 45.625 160 82 3 22 178 6 163 6.20e-45 158
Msa1416130 AT1G34180.1 50.318 157 73 3 24 177 18 172 6.20e-45 162
Msa1416130 AT3G49530.2 51.613 155 71 3 20 171 11 164 3.64e-44 157
Msa1416130 AT1G34180.4 46.746 169 73 3 24 177 18 184 7.55e-44 157
Msa1416130 AT3G49530.1 51.613 155 71 3 20 171 11 164 7.78e-44 157
Msa1416130 AT3G10480.3 44.041 193 67 4 21 175 26 215 2.28e-43 157
Msa1416130 AT1G32870.2 50.575 174 73 5 9 177 1 166 2.86e-43 157
Msa1416130 AT1G32870.1 50.575 174 73 5 9 177 1 166 3.28e-43 157
Msa1416130 AT1G34180.2 46.746 169 73 3 24 177 18 184 4.14e-43 157
Msa1416130 AT5G24590.2 44.271 192 95 5 21 201 12 202 4.39e-43 155
Msa1416130 AT1G32870.3 50.000 180 74 6 6 177 31 202 6.18e-43 157
Msa1416130 AT2G17040.1 44.805 154 80 2 24 176 8 157 1.25e-41 147
Msa1416130 AT2G27300.1 47.682 151 70 3 21 170 13 155 2.70e-41 148
Msa1416130 AT1G32510.1 47.799 159 74 3 22 171 6 164 7.92e-41 145
Msa1416130 AT5G22290.1 41.243 177 92 4 21 192 20 189 3.61e-39 142
Msa1416130 AT3G12910.1 41.436 181 89 5 14 178 13 192 9.35e-39 140
Msa1416130 AT1G56010.1 55.963 109 42 2 71 175 2 108 2.80e-37 135
Msa1416130 AT3G12977.2 56.075 107 43 2 71 175 14 118 2.89e-37 134
Msa1416130 AT4G28530.2 52.344 128 45 1 22 133 10 137 3.17e-36 134
Msa1416130 AT3G44290.2 43.836 146 73 3 24 168 16 153 7.21e-35 128
Msa1416130 AT4G10350.2 50.400 125 56 3 67 187 7 129 2.92e-34 128
Msa1416130 AT3G44290.1 43.836 146 73 3 24 168 16 153 4.46e-34 129
Msa1416130 AT5G04395.1 42.069 145 70 2 19 149 25 169 1.59e-31 117
Msa1416130 AT5G64530.1 32.353 204 104 5 22 210 3 187 1.64e-28 110
Msa1416130 AT3G44350.2 39.157 166 93 5 20 178 3 167 1.23e-27 109
Msa1416130 AT2G33480.3 50.495 101 47 2 75 174 8 106 1.90e-26 105
Msa1416130 AT5G64530.2 41.406 128 63 2 22 149 3 118 1.91e-26 103
Msa1416130 AT4G01550.1 40.645 155 84 4 25 175 7 157 1.92e-26 109
Msa1416130 AT1G02230.1 39.735 151 80 7 23 168 4 148 8.76e-26 106
Msa1416130 AT5G22380.1 37.195 164 91 6 25 178 8 169 1.52e-25 103
Msa1416130 AT4G01520.1 35.196 179 103 7 23 192 5 179 2.61e-25 104
Msa1416130 AT3G04420.2 36.601 153 87 4 23 171 4 150 9.91e-25 102
Msa1416130 AT2G18060.2 42.342 111 54 3 100 210 2 102 1.21e-24 102
Msa1416130 AT3G04420.1 36.601 153 87 4 23 171 4 150 2.01e-24 102
Msa1416130 AT4G01540.4 37.584 149 84 5 25 168 7 151 2.16e-24 103
Msa1416130 AT4G01540.3 37.584 149 84 5 25 168 7 151 3.75e-24 103
Msa1416130 AT4G01540.2 37.584 149 84 5 25 168 7 151 4.59e-24 102
Msa1416130 AT4G01540.1 37.584 149 84 5 25 168 7 151 6.55e-24 102
Msa1416130 AT3G10490.4 56.627 83 32 2 95 175 2 82 7.30e-23 98.6
Msa1416130 AT3G10490.3 56.627 83 32 2 95 175 2 82 7.30e-23 98.6
Msa1416130 AT3G44350.1 41.045 134 73 4 20 148 3 135 8.39e-23 94.0
Msa1416130 AT1G02250.1 36.184 152 84 6 23 168 4 148 3.82e-22 96.7
Msa1416130 AT2G43000.2 42.708 96 51 2 83 176 1 94 1.82e-20 88.6
Msa1416130 AT1G02220.1 37.984 129 71 4 23 147 4 127 7.31e-20 90.5
Msa1416130 AT1G01010.1 37.013 154 81 6 25 168 6 153 4.72e-19 88.2
Msa1416130 AT5G14000.1 32.903 155 96 4 22 174 15 163 1.32e-17 80.9
Msa1416130 AT5G14000.2 36.719 128 75 3 22 147 15 138 1.94e-16 76.3
Msa1416130 AT3G04430.1 34.848 132 74 3 28 148 6 136 6.19e-16 75.9
Msa1416130 AT5G22290.2 40.625 96 46 3 101 192 2 90 6.37e-16 77.0
Msa1416130 AT3G56530.1 30.323 155 102 4 18 169 48 199 5.34e-15 75.5
Msa1416130 AT4G28500.1 31.928 166 88 8 22 169 59 217 7.22e-14 72.0
Msa1416130 AT5G50820.1 31.818 154 71 6 17 156 12 145 8.18e-14 69.7
Msa1416130 AT5G56620.2 30.682 176 87 8 22 169 43 211 3.92e-12 67.4
Msa1416130 AT5G56620.3 30.682 176 87 8 22 169 43 211 4.38e-12 67.4
Msa1416130 AT5G56620.1 30.682 176 87 8 22 169 43 211 5.84e-12 67.0

Find 97 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAGGATTCAGCATTTC+AGG 0.147743 tig0024317:-60386 Msa1416130:CDS
CAGAATATTATTAATAATAT+TGG 0.210903 tig0024317:-60224 Msa1416130:CDS
TGCTCATGCAACAATGAATA+TGG 0.229206 tig0024317:-60276 Msa1416130:CDS
GATATCAGATTTATGTTATT+AGG 0.247457 tig0024317:+60575 None:intergenic
TAATTAATTTAGTAGGAATT+AGG 0.248881 tig0024317:+60110 None:intergenic
CTAGAGGAGAGAAAAGTAAT+TGG 0.268976 tig0024317:-63349 Msa1416130:CDS
CCTATTTCCTGCATGCTATA+AGG 0.298476 tig0024317:+60599 None:intergenic
GACCAGGGATATAGAATTAA+TGG 0.299064 tig0024317:-63913 Msa1416130:CDS
CAATCCTGCTCTTGTATTGT+TGG 0.299835 tig0024317:+60625 None:intergenic
GCTCCTCGTAATTTCCTTTA+CGG 0.322347 tig0024317:-60506 Msa1416130:CDS
CTAACGATAATTAATTTAGT+AGG 0.351551 tig0024317:+60103 None:intergenic
GCATGGGTCTAGATACTTAC+TGG 0.357689 tig0024317:-60133 Msa1416130:CDS
AAAATGCAGGGTAGTTCAAC+TGG 0.366088 tig0024317:+60420 None:intergenic
ACATACCTTGTTTGTTCTAA+AGG 0.368370 tig0024317:+63292 None:intergenic
TGCTCTTGTATTGTTGGAAC+TGG 0.374259 tig0024317:+60631 None:intergenic
GAGCAACAAACACCGGATAC+TGG 0.377955 tig0024317:-63466 Msa1416130:CDS
TCCTGTGGTCTTCCAGTATC+CGG 0.379446 tig0024317:+63454 None:intergenic
CCTTATAGCATGCAGGAAAT+AGG 0.388121 tig0024317:-60599 Msa1416130:CDS
TTCCATTAATTCTATATCCC+TGG 0.403615 tig0024317:+63911 None:intergenic
TCAGGGCTTAACTTGAACCT+TGG 0.407322 tig0024317:-60368 Msa1416130:CDS
AGTATCCGGTGTTTGTTGCT+CGG 0.427325 tig0024317:+63468 None:intergenic
TCCGGTGTTTGTTGCTCGGT+TGG 0.434798 tig0024317:+63472 None:intergenic
TCATGCAGATACTGCATCAT+TGG 0.442369 tig0024317:+60542 None:intergenic
AACCTTGGATCGGGCGGAGG+AGG 0.448875 tig0024317:-60353 Msa1416130:CDS
CTCAAATGGCAATAAGTACA+TGG 0.449881 tig0024317:-60168 Msa1416130:CDS
CTCCTCCTCCGCCCGATCCA+AGG 0.458521 tig0024317:+60351 None:intergenic
CCTCCTGTTGCTGAAAATGC+AGG 0.464674 tig0024317:+60407 None:intergenic
TTACAACACAAACCACTTTG+CGG 0.465955 tig0024317:-60322 Msa1416130:CDS
AGATGGAGAAGGAGAGGACC+AGG 0.471304 tig0024317:-63929 Msa1416130:CDS
GAAGGCAAAGATGGGAGAAA+AGG 0.475981 tig0024317:-63546 Msa1416130:CDS
CAAAGTGGTTTGTGTTGTAA+TGG 0.484732 tig0024317:+60325 None:intergenic
AACGGCAATAATAACTCAAA+TGG 0.484848 tig0024317:-60182 Msa1416130:CDS
GGTTGGAATGAAGAAGACTT+TGG 0.485009 tig0024317:-63393 Msa1416130:CDS
TACATACCTGGTAGCTCCCA+TGG 0.488949 tig0024317:+63738 None:intergenic
GTTATTATTGCCGTTGCTCA+TGG 0.489391 tig0024317:+60190 None:intergenic
TAGAGGAGAGAAAAGTAATT+GGG 0.496077 tig0024317:-63348 Msa1416130:CDS
AACTGGGAATATTGCATCGT+TGG 0.496826 tig0024317:+60437 None:intergenic
CTTAACTTGAACCTTGGATC+GGG 0.501563 tig0024317:-60362 Msa1416130:CDS
AGGTGGATTTAGAGTGAATA+CGG 0.504474 tig0024317:+63312 None:intergenic
AGTTCCAACAATACAAGAGC+AGG 0.508263 tig0024317:-60629 Msa1416130:CDS
TGACAGTGTTACATCGGAGT+TGG 0.510341 tig0024317:-63414 Msa1416130:CDS
GCTCATGCAACAATGAATAT+GGG 0.513318 tig0024317:-60275 Msa1416130:CDS
AGAGATCGTAAATATCCAAC+GGG 0.520918 tig0024317:-63503 Msa1416130:CDS
CGGTTGGTTCTCACACCCGT+TGG 0.529136 tig0024317:+63488 None:intergenic
GGAAGAAAGTGGTGGAAAAG+AGG 0.529217 tig0024317:-63892 Msa1416130:CDS
TATGCTGATTCCGTCCGTAA+AGG 0.529302 tig0024317:+60492 None:intergenic
GCTTAACTTGAACCTTGGAT+CGG 0.537039 tig0024317:-60363 Msa1416130:CDS
TGGCAATAAGTACATGGGAA+TGG 0.539125 tig0024317:-60162 Msa1416130:CDS
GACATGTGCAGCAGGATGAA+TGG 0.545037 tig0024317:-60709 Msa1416130:intron
TACCTTGTTTGTTCTAAAGG+TGG 0.547876 tig0024317:+63295 None:intergenic
CATGGGAATGGAGAATTGCA+TGG 0.548410 tig0024317:-60150 Msa1416130:CDS
TTGAACCTTGGATCGGGCGG+AGG 0.550086 tig0024317:-60356 Msa1416130:CDS
CTCGTAATTTCCTTTACGGA+CGG 0.550106 tig0024317:-60502 Msa1416130:CDS
AAATCGAAATCCCGGTGGTA+GGG 0.551569 tig0024317:+63866 None:intergenic
GAGAAGGATTCAGCATTTCA+GGG 0.553123 tig0024317:-60385 Msa1416130:CDS
ACATGTGCAGCAGGATGAAT+GGG 0.554242 tig0024317:-60708 Msa1416130:intron
ATCTCAATAAATCTGAACCA+TGG 0.554434 tig0024317:-63755 Msa1416130:CDS
AGGATGAATGGGTGATCTGT+AGG 0.556960 tig0024317:-60697 Msa1416130:CDS
AGTGTTACATCGGAGTTGGT+TGG 0.560551 tig0024317:-63410 Msa1416130:CDS
AGGAAATTACGAGGAGCAGA+AGG 0.563910 tig0024317:+60512 None:intergenic
ATTGAATCCTTATAGCATGC+AGG 0.564559 tig0024317:-60606 Msa1416130:CDS
GAAATCGAAATCCCGGTGGT+AGG 0.566387 tig0024317:+63865 None:intergenic
TCTCAATAAATCTGAACCAT+GGG 0.566445 tig0024317:-63754 Msa1416130:CDS
TGCAGATACTGCATCATTGG+TGG 0.568804 tig0024317:+60545 None:intergenic
ACCAACCGAGCAACAAACAC+CGG 0.569937 tig0024317:-63473 Msa1416130:CDS
ATAGAATTAATGGAAGAAAG+TGG 0.574179 tig0024317:-63903 Msa1416130:CDS
GTGATGAGTTCTTCATCTGT+AGG 0.581162 tig0024317:+63840 None:intergenic
AACTTGAACCTTGGATCGGG+CGG 0.589134 tig0024317:-60359 Msa1416130:CDS
GTAGGATGAAATCGAAATCC+CGG 0.589979 tig0024317:+63858 None:intergenic
TCTGAACCATGGGAGCTACC+AGG 0.593672 tig0024317:-63744 Msa1416130:intron
TGTTGGAACTGGAATTGCAA+GGG 0.597117 tig0024317:+60642 None:intergenic
AAAAGAGGAAACCCTACCAC+CGG 0.597559 tig0024317:-63877 Msa1416130:CDS
AAATGTGGGGAATGTTGCAT+TGG 0.600516 tig0024317:+60299 None:intergenic
TTGTTGCATGAGCAAAATGT+GGG 0.601779 tig0024317:+60285 None:intergenic
ACCGGATACTGGAAGACCAC+AGG 0.606858 tig0024317:-63455 Msa1416130:CDS
CTCCTGTTGCTGAAAATGCA+GGG 0.608809 tig0024317:+60408 None:intergenic
GAGAGATCGTAAATATCCAA+CGG 0.612811 tig0024317:-63504 Msa1416130:CDS
ATGTTGCATTGGCCGCAAAG+TGG 0.617388 tig0024317:+60310 None:intergenic
CAAAGATGGGAGAAAAGGAA+TGG 0.621507 tig0024317:-63541 Msa1416130:CDS
ATGGGAATGGAGAATTGCAT+GGG 0.622042 tig0024317:-60149 Msa1416130:CDS
AATCTTTGACAGTGTTACAT+CGG 0.624512 tig0024317:-63420 Msa1416130:CDS
ATTGTTGCATGAGCAAAATG+TGG 0.631252 tig0024317:+60284 None:intergenic
TCAAATGGCAATAAGTACAT+GGG 0.642518 tig0024317:-60167 Msa1416130:CDS
GAATTAATGGAAGAAAGTGG+TGG 0.647512 tig0024317:-63900 Msa1416130:CDS
ACGTACAGATGGAGAAGGAG+AGG 0.648950 tig0024317:-63935 None:intergenic
ATCCACCTTTAGAACAAACA+AGG 0.652509 tig0024317:-63297 Msa1416130:intron
GATGGAGAAGGAGAGGACCA+GGG 0.657515 tig0024317:-63928 Msa1416130:CDS
AAAGAGGAAACCCTACCACC+GGG 0.660538 tig0024317:-63876 Msa1416130:CDS
GTACTAGAAACCATGAGCAA+CGG 0.660684 tig0024317:-60200 Msa1416130:CDS
AGATACTGCATCATTGGTGG+TGG 0.660857 tig0024317:+60548 None:intergenic
TACAAAGGCAGAGCTCCTAG+AGG 0.666043 tig0024317:-63365 Msa1416130:CDS
AAATGCAGGGTAGTTCAACT+GGG 0.672051 tig0024317:+60421 None:intergenic
GGTATACGTACAGATGGAGA+AGG 0.677565 tig0024317:-63940 None:intergenic
CGTCCGTAAAGGAAATTACG+AGG 0.696088 tig0024317:+60503 None:intergenic
TTGTTGGAACTGGAATTGCA+AGG 0.698502 tig0024317:+60641 None:intergenic
GGATGAAATCGAAATCCCGG+TGG 0.770141 tig0024317:+63861 None:intergenic
TGTTGCATGAGCAAAATGTG+GGG 0.786023 tig0024317:+60286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATTAAAACAATTAGT+GGG + tig0024317:61259-61278 None:intergenic 10.0%
!! TTTAATATTAAAACAATTAG+TGG + tig0024317:61260-61279 None:intergenic 10.0%
!! AAAAAATACTAATTATGTAA+CGG - tig0024317:61490-61509 Msa1416130:intron 10.0%
!! TAATTATTAATTTAATGCTT+TGG + tig0024317:61976-61995 None:intergenic 10.0%
!! AAAAAAAAAAAACTCAAAAT+GGG + tig0024317:62735-62754 None:intergenic 10.0%
!! AAAAAAAAAAAAACTCAAAA+TGG + tig0024317:62736-62755 None:intergenic 10.0%
!! TTAGTTTAATACTATAAAAT+TGG + tig0024317:62908-62927 None:intergenic 10.0%
!! CAGAATATTATTAATAATAT+TGG - tig0024317:63821-63840 Msa1416130:CDS 10.0%
!! AACAATTAACAACAAAAAAA+AGG - tig0024317:60387-60406 Msa1416130:CDS 15.0%
!! GTCTAAAAAATATTTATAAG+TGG - tig0024317:61028-61047 Msa1416130:intron 15.0%
!! CATGTTCAAATATTAAAAAT+GGG - tig0024317:61095-61114 Msa1416130:intron 15.0%
!!! AAAATTTAGTTTTTTCATAG+CGG + tig0024317:61121-61140 None:intergenic 15.0%
!! TGATAAACTAATACTAATAT+CGG - tig0024317:61413-61432 Msa1416130:intron 15.0%
!! ATTAAATTTGAGAACTTATA+CGG + tig0024317:62272-62291 None:intergenic 15.0%
!!! TTAAAATATATATAACTTGC+CGG + tig0024317:62491-62510 None:intergenic 15.0%
!!! TTTTTTTTTTAGCTTATCAT+TGG - tig0024317:62749-62768 Msa1416130:intron 15.0%
!! CAATTAATACGACTATAATA+AGG + tig0024317:60904-60923 None:intergenic 20.0%
!! TATGTATTTATAACTATCCT+AGG - tig0024317:60973-60992 Msa1416130:intron 20.0%
!!! CCATTTTTAATATTTGAACA+TGG + tig0024317:61097-61116 None:intergenic 20.0%
!! CCATGTTCAAATATTAAAAA+TGG - tig0024317:61094-61113 Msa1416130:intron 20.0%
!! TAAGTAAAACTAAGTTTGTA+TGG - tig0024317:61200-61219 Msa1416130:intron 20.0%
!! AAGTAAAACTAAGTTTGTAT+GGG - tig0024317:61201-61220 Msa1416130:intron 20.0%
!!! GATGATTCTTTTTAAGTTTT+TGG + tig0024317:61316-61335 None:intergenic 20.0%
!! AAAATGAGTCTTAAGTATAT+TGG - tig0024317:61350-61369 Msa1416130:intron 20.0%
!!! GATTTAATTTGCATTGTTAA+TGG - tig0024317:61512-61531 Msa1416130:intron 20.0%
!!! GTAATTGAGACTTTTATATT+TGG - tig0024317:61633-61652 Msa1416130:intron 20.0%
!! ACTATTTATTTCAATTTGTG+AGG - tig0024317:62242-62261 Msa1416130:intron 20.0%
!!! GTTCTAAAGTTACTTTTTAT+GGG + tig0024317:62626-62645 None:intergenic 20.0%
!!! TGTTCTAAAGTTACTTTTTA+TGG + tig0024317:62627-62646 None:intergenic 20.0%
!! AAGAAAAAGAAAAATTTGTG+AGG - tig0024317:63046-63065 Msa1416130:intron 20.0%
!! AGAAAAAGAAAAATTTGTGA+GGG - tig0024317:63047-63066 Msa1416130:intron 20.0%
!! TAATCTAACATGGTAAAAAT+TGG + tig0024317:63134-63153 None:intergenic 20.0%
!!! TCATTTTCTTTGCAAAATAA+AGG + tig0024317:63299-63318 None:intergenic 20.0%
!! GATATCAGATTTATGTTATT+AGG + tig0024317:63473-63492 None:intergenic 20.0%
! ATAGAATTAATGGAAGAAAG+TGG - tig0024317:60142-60161 Msa1416130:CDS 25.0%
!!! ATATCAGATTCTAGTTTTAC+AGG - tig0024317:60247-60266 Msa1416130:CDS 25.0%
! AGGTATGTAGTATAATATAC+AGG - tig0024317:60768-60787 Msa1416130:intron 25.0%
! TAATATACAGGCATAGATTT+AGG - tig0024317:60780-60799 Msa1416130:intron 25.0%
! AGGGTATGAAATTAAGTATA+TGG - tig0024317:61006-61025 Msa1416130:intron 25.0%
! TAAAAAATCGATAGACATCT+TGG + tig0024317:61737-61756 None:intergenic 25.0%
! CTATTGAATCCAAGATTTAA+TGG - tig0024317:61908-61927 Msa1416130:intron 25.0%
! TAGAATTTGCCATTAAATCT+TGG + tig0024317:61920-61939 None:intergenic 25.0%
!!! TTTTATTTCATCAACGCTTT+TGG + tig0024317:62070-62089 None:intergenic 25.0%
!! ACAATTTTTGCTTTATGGAT+TGG + tig0024317:62514-62533 None:intergenic 25.0%
! AATCCATAAAGCAAAAATTG+TGG - tig0024317:62513-62532 Msa1416130:intron 25.0%
! ATCCATAAAGCAAAAATTGT+GGG - tig0024317:62514-62533 Msa1416130:intron 25.0%
! TGTCACATATGTCTTAAAAT+TGG + tig0024317:62703-62722 None:intergenic 25.0%
! TAAACTTGATCTTGCTTAAA+TGG + tig0024317:62824-62843 None:intergenic 25.0%
!! TTGAAACGTCTAATTTTCAT+CGG - tig0024317:62948-62967 Msa1416130:intron 25.0%
! TCATATAAGGTTGCTTAAAT+TGG + tig0024317:63012-63031 None:intergenic 25.0%
! ACATTTCATCTAATCTAACA+TGG + tig0024317:63144-63163 None:intergenic 25.0%
! TGTTAAGAAATCGAGTTAAA+AGG + tig0024317:63199-63218 None:intergenic 25.0%
TTCCATTAATTCTATATCCC+TGG + tig0024317:60137-60156 None:intergenic 30.0%
ATCTCAATAAATCTGAACCA+TGG - tig0024317:60290-60309 Msa1416130:CDS 30.0%
TCTCAATAAATCTGAACCAT+GGG - tig0024317:60291-60310 Msa1416130:CDS 30.0%
! AGTTCGTGCATGAATATTTT+AGG - tig0024317:60476-60495 Msa1416130:CDS 30.0%
! GTTCGTGCATGAATATTTTA+GGG - tig0024317:60477-60496 Msa1416130:CDS 30.0%
AATCTTTGACAGTGTTACAT+CGG - tig0024317:60625-60644 Msa1416130:CDS 30.0%
!! AAGACTTTGGTCTTTTACAA+AGG - tig0024317:60665-60684 Msa1416130:CDS 30.0%
TAGAGGAGAGAAAAGTAATT+GGG - tig0024317:60697-60716 Msa1416130:CDS 30.0%
! ACATACCTTGTTTGTTCTAA+AGG + tig0024317:60756-60775 None:intergenic 30.0%
TCCTTAGCTTACTAATAATG+TGG - tig0024317:60815-60834 Msa1416130:intron 30.0%
ACCACATTATTAGTAAGCTA+AGG + tig0024317:60819-60838 None:intergenic 30.0%
AAAACTAAGTTTGTATGGGA+AGG - tig0024317:61205-61224 Msa1416130:intron 30.0%
CAATTACATACACAACTACT+AGG + tig0024317:61620-61639 None:intergenic 30.0%
TTCAAATTCACACAAATGCT+CGG - tig0024317:61656-61675 Msa1416130:intron 30.0%
!! ATATAGCACTCAAAAGTGTT+AGG + tig0024317:61776-61795 None:intergenic 30.0%
ACTTTACAATTCCACTTGTA+TGG + tig0024317:61883-61902 None:intergenic 30.0%
!! ACCAAATATTTTGAGCGTAT+CGG - tig0024317:61946-61965 Msa1416130:intron 30.0%
TCCATAAAGCAAAAATTGTG+GGG - tig0024317:62515-62534 Msa1416130:intron 30.0%
!! TAGGTTTCTAACTTGCTTTA+TGG + tig0024317:62541-62560 None:intergenic 30.0%
! TCATTTTCACTTCAATGCAT+AGG + tig0024317:62560-62579 None:intergenic 30.0%
ACAATCTTATGTTGCAGTTA+TGG - tig0024317:62599-62618 Msa1416130:intron 30.0%
TTAAAATTGGTCATGCATAC+CGG + tig0024317:62690-62709 None:intergenic 30.0%
TAAGACATATGTGACAAACA+TGG - tig0024317:62707-62726 Msa1416130:intron 30.0%
AAGACATATGTGACAAACAT+GGG - tig0024317:62708-62727 Msa1416130:intron 30.0%
TGTAAATGTCTGATTGTGAT+CGG - tig0024317:62877-62896 Msa1416130:intron 30.0%
AAGGTTGCTTAAATTGGAAT+TGG + tig0024317:63006-63025 None:intergenic 30.0%
CGCATAAACTAAGTCATATA+AGG + tig0024317:63025-63044 None:intergenic 30.0%
GGAGTTTATGTGAAATTGAT+TGG - tig0024317:63068-63087 Msa1416130:intron 30.0%
! CAGGCATCATATTGAATTTT+TGG + tig0024317:63237-63256 None:intergenic 30.0%
AACGGCAATAATAACTCAAA+TGG - tig0024317:63863-63882 Msa1416130:CDS 30.0%
TCAAATGGCAATAAGTACAT+GGG - tig0024317:63878-63897 Msa1416130:CDS 30.0%
GACCAGGGATATAGAATTAA+TGG - tig0024317:60132-60151 Msa1416130:CDS 35.0%
GAATTAATGGAAGAAAGTGG+TGG - tig0024317:60145-60164 Msa1416130:CDS 35.0%
!! GTGCATGAATATTTTAGGGA+AGG - tig0024317:60481-60500 Msa1416130:CDS 35.0%
!! TATTTTAGGGAAGGCAAAGA+TGG - tig0024317:60490-60509 Msa1416130:CDS 35.0%
!! ATTTTAGGGAAGGCAAAGAT+GGG - tig0024317:60491-60510 Msa1416130:CDS 35.0%
GAGAGATCGTAAATATCCAA+CGG - tig0024317:60541-60560 Msa1416130:CDS 35.0%
AGAGATCGTAAATATCCAAC+GGG - tig0024317:60542-60561 Msa1416130:CDS 35.0%
!! CAATTACTTTTCTCTCCTCT+AGG + tig0024317:60698-60717 None:intergenic 35.0%
CTAGAGGAGAGAAAAGTAAT+TGG - tig0024317:60696-60715 Msa1416130:CDS 35.0%
! AGGTGGATTTAGAGTGAATA+CGG + tig0024317:60736-60755 None:intergenic 35.0%
!! ATCCACCTTTAGAACAAACA+AGG - tig0024317:60748-60767 Msa1416130:intron 35.0%
!! TACCTTGTTTGTTCTAAAGG+TGG + tig0024317:60753-60772 None:intergenic 35.0%
CCATCATCTGTAATTAGTGA+AGG + tig0024317:60940-60959 None:intergenic 35.0%
CCTTCACTAATTACAGATGA+TGG - tig0024317:60937-60956 Msa1416130:intron 35.0%
TATCCTAGGATATGTGTTGA+GGG - tig0024317:60987-61006 Msa1416130:intron 35.0%
GATGACATATCTAACCATCA+GGG - tig0024317:61050-61069 Msa1416130:intron 35.0%
TCAAATTCACACAAATGCTC+GGG - tig0024317:61657-61676 Msa1416130:intron 35.0%
ATAGAATGCACTTGAGTCTT+CGG + tig0024317:61697-61716 None:intergenic 35.0%
GACATCTTGGAATAGTTTAG+TGG + tig0024317:61724-61743 None:intergenic 35.0%
ACCGATACGCTCAAAATATT+TGG + tig0024317:61950-61969 None:intergenic 35.0%
!!! TGACGTTTTTTCTTGTGAGA+TGG - tig0024317:62189-62208 Msa1416130:intron 35.0%
AAGGTTGGATTTCGATAAGA+TGG + tig0024317:62307-62326 None:intergenic 35.0%
AACACGTTCTTATTACCTCA+AGG + tig0024317:62365-62384 None:intergenic 35.0%
! GGGAAAATTTTTCTCCAAAG+TGG + tig0024317:62426-62445 None:intergenic 35.0%
TTCTGCAATAACAGGTTCTT+GGG + tig0024317:62458-62477 None:intergenic 35.0%
TTTCTGCAATAACAGGTTCT+TGG + tig0024317:62459-62478 None:intergenic 35.0%
ACCTGTTATTGCAGAAATTG+TGG - tig0024317:62462-62481 Msa1416130:intron 35.0%
CCTGTTATTGCAGAAATTGT+GGG - tig0024317:62463-62482 Msa1416130:intron 35.0%
CTGTTATTGCAGAAATTGTG+GGG - tig0024317:62464-62483 Msa1416130:intron 35.0%
! AGATGCTCTAAGTTATTCAC+CGG - tig0024317:62668-62687 Msa1416130:intron 35.0%
!! TCTTGTGTTGCTTTAAAGTG+AGG - tig0024317:62784-62803 Msa1416130:intron 35.0%
TATACTAGTAAAGAGCAAGC+AGG + tig0024317:63256-63275 None:intergenic 35.0%
!! TGTAGGATTTTCAAGAAGAG+TGG - tig0024317:63365-63384 Msa1416130:CDS 35.0%
ATTGAATCCTTATAGCATGC+AGG - tig0024317:63439-63458 Msa1416130:CDS 35.0%
! CAAAGTGGTTTGTGTTGTAA+TGG + tig0024317:63723-63742 None:intergenic 35.0%
TTACAACACAAACCACTTTG+CGG - tig0024317:63723-63742 Msa1416130:intron 35.0%
TTGTTGCATGAGCAAAATGT+GGG + tig0024317:63763-63782 None:intergenic 35.0%
ATTGTTGCATGAGCAAAATG+TGG + tig0024317:63764-63783 None:intergenic 35.0%
TGCTCATGCAACAATGAATA+TGG - tig0024317:63769-63788 Msa1416130:CDS 35.0%
GCTCATGCAACAATGAATAT+GGG - tig0024317:63770-63789 Msa1416130:CDS 35.0%
CTCAAATGGCAATAAGTACA+TGG - tig0024317:63877-63896 Msa1416130:CDS 35.0%
GTAGGATGAAATCGAAATCC+CGG + tig0024317:60190-60209 None:intergenic 40.0%
GTGATGAGTTCTTCATCTGT+AGG + tig0024317:60208-60227 None:intergenic 40.0%
CAAAGATGGGAGAAAAGGAA+TGG - tig0024317:60504-60523 Msa1416130:CDS 40.0%
! GATTTCTCGATCTTTTCCTG+TGG + tig0024317:60609-60628 None:intergenic 40.0%
GGTTGGAATGAAGAAGACTT+TGG - tig0024317:60652-60671 Msa1416130:CDS 40.0%
CTATCCTAGGATATGTGTTG+AGG - tig0024317:60986-61005 Msa1416130:intron 40.0%
ATACCCTCAACACATATCCT+AGG + tig0024317:60993-61012 None:intergenic 40.0%
GGATGACATATCTAACCATC+AGG - tig0024317:61049-61068 Msa1416130:intron 40.0%
ATTCCACTTGTATGGTTAGC+AGG + tig0024317:61875-61894 None:intergenic 40.0%
! TCTAGAACTGGCTAGAAAGT+AGG + tig0024317:62388-62407 None:intergenic 40.0%
! TACTTTCTAGCCAGTTCTAG+AGG - tig0024317:62387-62406 Msa1416130:intron 40.0%
CCCACAATTTCTGCAATAAC+AGG + tig0024317:62466-62485 None:intergenic 40.0%
! GCCCCACAATTTTTGCTTTA+TGG + tig0024317:62519-62538 None:intergenic 40.0%
TCAGAGACTATAAGCGTTCA+AGG - tig0024317:62851-62870 Msa1416130:intron 40.0%
!! ATTTTCAAGAAGAGTGGCAG+TGG - tig0024317:63371-63390 Msa1416130:CDS 40.0%
TGTTGGAACTGGAATTGCAA+GGG + tig0024317:63406-63425 None:intergenic 40.0%
TTGTTGGAACTGGAATTGCA+AGG + tig0024317:63407-63426 None:intergenic 40.0%
TGCTCTTGTATTGTTGGAAC+TGG + tig0024317:63417-63436 None:intergenic 40.0%
AGTTCCAACAATACAAGAGC+AGG - tig0024317:63416-63435 Msa1416130:CDS 40.0%
CAATCCTGCTCTTGTATTGT+TGG + tig0024317:63423-63442 None:intergenic 40.0%
CCTATTTCCTGCATGCTATA+AGG + tig0024317:63449-63468 None:intergenic 40.0%
CCTTATAGCATGCAGGAAAT+AGG - tig0024317:63446-63465 Msa1416130:CDS 40.0%
TCATGCAGATACTGCATCAT+TGG + tig0024317:63506-63525 None:intergenic 40.0%
GCTCCTCGTAATTTCCTTTA+CGG - tig0024317:63539-63558 Msa1416130:CDS 40.0%
CTCGTAATTTCCTTTACGGA+CGG - tig0024317:63543-63562 Msa1416130:CDS 40.0%
AACTGGGAATATTGCATCGT+TGG + tig0024317:63611-63630 None:intergenic 40.0%
AAATGCAGGGTAGTTCAACT+GGG + tig0024317:63627-63646 None:intergenic 40.0%
AAAATGCAGGGTAGTTCAAC+TGG + tig0024317:63628-63647 None:intergenic 40.0%
GAGAAGGATTCAGCATTTCA+GGG - tig0024317:63660-63679 Msa1416130:intron 40.0%
! GCTTAACTTGAACCTTGGAT+CGG - tig0024317:63682-63701 Msa1416130:intron 40.0%
! CTTAACTTGAACCTTGGATC+GGG - tig0024317:63683-63702 Msa1416130:intron 40.0%
AAATGTGGGGAATGTTGCAT+TGG + tig0024317:63749-63768 None:intergenic 40.0%
TGTTGCATGAGCAAAATGTG+GGG + tig0024317:63762-63781 None:intergenic 40.0%
GTACTAGAAACCATGAGCAA+CGG - tig0024317:63845-63864 Msa1416130:CDS 40.0%
GTTATTATTGCCGTTGCTCA+TGG + tig0024317:63858-63877 None:intergenic 40.0%
TGGCAATAAGTACATGGGAA+TGG - tig0024317:63883-63902 Msa1416130:CDS 40.0%
ATGGGAATGGAGAATTGCAT+GGG - tig0024317:63896-63915 Msa1416130:CDS 40.0%
! GGAAGAAAGTGGTGGAAAAG+AGG - tig0024317:60153-60172 Msa1416130:CDS 45.0%
AAAAGAGGAAACCCTACCAC+CGG - tig0024317:60168-60187 Msa1416130:CDS 45.0%
AAATCGAAATCCCGGTGGTA+GGG + tig0024317:60182-60201 None:intergenic 45.0%
CACATACATACACTAGTGCG+TGG + tig0024317:60341-60360 None:intergenic 45.0%
GAAGGCAAAGATGGGAGAAA+AGG - tig0024317:60499-60518 Msa1416130:CDS 45.0%
! AGTATCCGGTGTTTGTTGCT+CGG + tig0024317:60580-60599 None:intergenic 45.0%
TGACAGTGTTACATCGGAGT+TGG - tig0024317:60631-60650 Msa1416130:CDS 45.0%
! AGTGTTACATCGGAGTTGGT+TGG - tig0024317:60635-60654 Msa1416130:CDS 45.0%
! AACATGGCCTCCGATTTTAC+AGG + tig0024317:61081-61100 None:intergenic 45.0%
!! CCACATCATTCCTCTAGAAC+TGG + tig0024317:62400-62419 None:intergenic 45.0%
!! CCAGTTCTAGAGGAATGATG+TGG - tig0024317:62397-62416 Msa1416130:intron 45.0%
! GAATGATGTGGATGCCACTT+TGG - tig0024317:62409-62428 Msa1416130:intron 45.0%
ATTGCAGAAATTGTGGGGAC+CGG - tig0024317:62469-62488 Msa1416130:intron 45.0%
CTAATTGTGACATGTGCAGC+AGG - tig0024317:63328-63347 Msa1416130:CDS 45.0%
ACATGTGCAGCAGGATGAAT+GGG - tig0024317:63337-63356 Msa1416130:CDS 45.0%
AGGATGAATGGGTGATCTGT+AGG - tig0024317:63348-63367 Msa1416130:CDS 45.0%
AGATACTGCATCATTGGTGG+TGG + tig0024317:63500-63519 None:intergenic 45.0%
TGCAGATACTGCATCATTGG+TGG + tig0024317:63503-63522 None:intergenic 45.0%
AGGAAATTACGAGGAGCAGA+AGG + tig0024317:63536-63555 None:intergenic 45.0%
CGTCCGTAAAGGAAATTACG+AGG + tig0024317:63545-63564 None:intergenic 45.0%
!! TATGCTGATTCCGTCCGTAA+AGG + tig0024317:63556-63575 None:intergenic 45.0%
! TACCCTGCATTTTCAGCAAC+AGG - tig0024317:63635-63654 Msa1416130:intron 45.0%
CTCCTGTTGCTGAAAATGCA+GGG + tig0024317:63640-63659 None:intergenic 45.0%
! TTTTCAGCAACAGGAGGAGA+AGG - tig0024317:63644-63663 Msa1416130:intron 45.0%
GGAGAAGGATTCAGCATTTC+AGG - tig0024317:63659-63678 Msa1416130:intron 45.0%
! TCAGGGCTTAACTTGAACCT+TGG - tig0024317:63677-63696 Msa1416130:intron 45.0%
CATGGGAATGGAGAATTGCA+TGG - tig0024317:63895-63914 Msa1416130:CDS 45.0%
GCATGGGTCTAGATACTTAC+TGG - tig0024317:63912-63931 Msa1416130:CDS 45.0%
!!! ATTGTTTTAATATTAAAATT+TGG - tig0024317:61263-61282 Msa1416130:intron 5.0%
!!! TTGTTTTAATATTAAAATTT+GGG - tig0024317:61264-61283 Msa1416130:intron 5.0%
!! ATATTAAAAAAAAAAAATTG+AGG - tig0024317:61792-61811 Msa1416130:intron 5.0%
AAAGAGGAAACCCTACCACC+GGG - tig0024317:60169-60188 Msa1416130:CDS 50.0%
GAAATCGAAATCCCGGTGGT+AGG + tig0024317:60183-60202 None:intergenic 50.0%
GGATGAAATCGAAATCCCGG+TGG + tig0024317:60187-60206 None:intergenic 50.0%
TACATACCTGGTAGCTCCCA+TGG + tig0024317:60310-60329 None:intergenic 50.0%
! GTCTCAAGACTAGCTAGCTG+AGG - tig0024317:60414-60433 Msa1416130:CDS 50.0%
ACCAACCGAGCAACAAACAC+CGG - tig0024317:60572-60591 Msa1416130:CDS 50.0%
GAGCAACAAACACCGGATAC+TGG - tig0024317:60579-60598 Msa1416130:CDS 50.0%
TCCTGTGGTCTTCCAGTATC+CGG + tig0024317:60594-60613 None:intergenic 50.0%
TACAAAGGCAGAGCTCCTAG+AGG - tig0024317:60680-60699 Msa1416130:CDS 50.0%
! TTTTACAGGAACGGCCCTGA+TGG + tig0024317:61067-61086 None:intergenic 50.0%
CAGGGCCGTTCCTGTAAAAT+CGG - tig0024317:61068-61087 Msa1416130:intron 50.0%
! GGCCTCCGATTTTACAGGAA+CGG + tig0024317:61076-61095 None:intergenic 50.0%
CACTTGAGTCTTCGGTCTTG+AGG + tig0024317:61689-61708 None:intergenic 50.0%
TTGAGGCTCCTAAGATTGCG+AGG - tig0024317:61809-61828 Msa1416130:intron 50.0%
ACTTGTATGGTTAGCAGGCC+GGG + tig0024317:61870-61889 None:intergenic 50.0%
CACTTGTATGGTTAGCAGGC+CGG + tig0024317:61871-61890 None:intergenic 50.0%
GGAGATGCTCTTACGAAGGT+TGG + tig0024317:62322-62341 None:intergenic 50.0%
CGTTGGAGATGCTCTTACGA+AGG + tig0024317:62326-62345 None:intergenic 50.0%
CTCCAACGTTGTTCCATGCA+CGG - tig0024317:62338-62357 Msa1416130:intron 50.0%
ATTACCTCAAGGACCGTGCA+TGG + tig0024317:62354-62373 None:intergenic 50.0%
AGGTTCTTGGGCGTTCTTGA+GGG + tig0024317:62446-62465 None:intergenic 50.0%
GACATGTGCAGCAGGATGAA+TGG - tig0024317:63336-63355 Msa1416130:CDS 50.0%
CCTCCTGTTGCTGAAAATGC+AGG + tig0024317:63641-63660 None:intergenic 50.0%
! CCTGCATTTTCAGCAACAGG+AGG - tig0024317:63638-63657 Msa1416130:intron 50.0%
AACTTGAACCTTGGATCGGG+CGG - tig0024317:63686-63705 Msa1416130:intron 50.0%
! ATGTTGCATTGGCCGCAAAG+TGG + tig0024317:63738-63757 None:intergenic 50.0%
TCTGAACCATGGGAGCTACC+AGG - tig0024317:60301-60320 Msa1416130:CDS 55.0%
GTGGCGTGTGTGTACATACC+TGG + tig0024317:60322-60341 None:intergenic 55.0%
! TCCGGTGTTTGTTGCTCGGT+TGG + tig0024317:60576-60595 None:intergenic 55.0%
ACCGGATACTGGAAGACCAC+AGG - tig0024317:60590-60609 Msa1416130:CDS 55.0%
GGCCGTTCCTGTAAAATCGG+AGG - tig0024317:61071-61090 Msa1416130:intron 55.0%
GGCATGTGCAAGGTGAGCTA+CGG + tig0024317:61842-61861 None:intergenic 55.0%
AGCTCACCTTGCACATGCCA+AGG - tig0024317:61843-61862 Msa1416130:intron 55.0%
GCTCACCTTGCACATGCCAA+GGG - tig0024317:61844-61863 Msa1416130:intron 55.0%
CGGCCTGCTAACCATACAAG+TGG - tig0024317:61869-61888 Msa1416130:intron 55.0%
GACCGTGCATGGAACAACGT+TGG + tig0024317:62343-62362 None:intergenic 55.0%
TGTTCCATGCACGGTCCTTG+AGG - tig0024317:62347-62366 Msa1416130:intron 55.0%
CAGGTTCTTGGGCGTTCTTG+AGG + tig0024317:62447-62466 None:intergenic 55.0%
! CGGTTGGTTCTCACACCCGT+TGG + tig0024317:60560-60579 None:intergenic 60.0%
GCTCCTAAGATTGCGAGGCC+CGG - tig0024317:61814-61833 Msa1416130:intron 60.0%
TGCAAGGTGAGCTACGGTGC+CGG + tig0024317:61836-61855 None:intergenic 60.0%
TTGAACCTTGGATCGGGCGG+AGG - tig0024317:63689-63708 Msa1416130:intron 60.0%
GTGCCGGGCCTCGCAATCTT+AGG + tig0024317:61820-61839 None:intergenic 65.0%
GCAAGGTGAGCTACGGTGCC+GGG + tig0024317:61835-61854 None:intergenic 65.0%
CCTTGCACATGCCAAGGGCC+CGG - tig0024317:61849-61868 Msa1416130:intron 65.0%
AACCTTGGATCGGGCGGAGG+AGG - tig0024317:63692-63711 Msa1416130:intron 65.0%
CCGGGCCCTTGGCATGTGCA+AGG + tig0024317:61852-61871 None:intergenic 70.0%
TGGTTAGCAGGCCGGGCCCT+TGG + tig0024317:61863-61882 None:intergenic 70.0%
CTCCTCCTCCGCCCGATCCA+AGG + tig0024317:63697-63716 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0024317 gene 60118 63949 60118 ID=Msa1416130;Name=Msa1416130
tig0024317 mRNA 60118 63949 60118 ID=Msa1416130-mRNA-1;Parent=Msa1416130;Name=Msa1416130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0|1|1|1|3|0|359
tig0024317 exon 63745 63949 63745 ID=Msa1416130-mRNA-1:exon:22791;Parent=Msa1416130-mRNA-1
tig0024317 exon 63298 63569 63298 ID=Msa1416130-mRNA-1:exon:22790;Parent=Msa1416130-mRNA-1
tig0024317 exon 60118 60720 60118 ID=Msa1416130-mRNA-1:exon:22789;Parent=Msa1416130-mRNA-1
tig0024317 CDS 63745 63949 63745 ID=Msa1416130-mRNA-1:cds;Parent=Msa1416130-mRNA-1
tig0024317 CDS 63298 63569 63298 ID=Msa1416130-mRNA-1:cds;Parent=Msa1416130-mRNA-1
tig0024317 CDS 60118 60720 60118 ID=Msa1416130-mRNA-1:cds;Parent=Msa1416130-mRNA-1
Gene Sequence

>Msa1416130

ATGGAGAAGGAGAGGACCAGGGATATAGAATTAATGGAAGAAAGTGGTGGAAAAGAGGAAACCCTACCACCGGGATTTCGATTTCATCCTACAGATGAAGAACTCATCACTTGCTATCTCATAAACAAGATATCAGATTCTAGTTTTACAGGCAAAGCAATAACTGATATAGATCTCAATAAATCTGAACCATGGGAGCTACCAGGGAAGGCAAAGATGGGAGAAAAGGAATGGTACTTTTTCAATATGAGAGATCGTAAATATCCAACGGGTGTGAGAACCAACCGAGCAACAAACACCGGATACTGGAAGACCACAGGAAAAGATCGAGAAATCTTTGACAGTGTTACATCGGAGTTGGTTGGAATGAAGAAGACTTTGGTCTTTTACAAAGGCAGAGCTCCTAGAGGAGAGAAAAGTAATTGGGTCATGCATGAATACCGTATTCACTCTAAATCCACCTTTAGAACAAACAAGCAGGATGAATGGGTGATCTGTAGGATTTTCAAGAAGAGTGGCAGTGGAAAAAAGTACCCTTGCAATTCCAGTTCCAACAATACAAGAGCAGGATTGAATCCTTATAGCATGCAGGAAATAGGTCCTAATAACATAAATCTGATATCGCTGCCACCACCAATGATGCAGTATCTGCATGAAGATTTTCCTTCTGCTCCTCGTAATTTCCTTTACGGACGGAATCAGCATAATAATAATTACATCAACTGTAATTCTACTGCACCAACGATGCAATATTCCCAGTTGAACTACCCTGCATTTTCAGCAACAGGAGGAGAAGGATTCAGCATTTCAGGGCTTAACTTGAACCTTGGATCGGGCGGAGGAGGAGCTGCCATTACAACACAAACCACTTTGCGGCCAATGCAACATTCCCCACATTTTGCTCATGCAACAATGAATATGGGTGCAGACAATGATTATGTTGATGCAGATCAGAATATTATTAATAATATTGGAGTACTAGAAACCATGAGCAACGGCAATAATAACTCAAATGGCAATAAGTACATGGGAATGGAGAATTGCATGGGTCTAGATACTTACTGGCCTAATTCCTACTAA
Protein sequence

>Msa1416130

MEKERTRDIELMEESGGKEETLPPGFRFHPTDEELITCYLINKISDSSFTGKAITDIDLNKSEPWELPGKAKMGEKEWYFFNMRDRKYPTGVRTNRATNTGYWKTTGKDREIFDSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNKQDEWVICRIFKKSGSGKKYPCNSSSNNTRAGLNPYSMQEIGPNNINLISLPPPMMQYLHEDFPSAPRNFLYGRNQHNNNYINCNSTAPTMQYSQLNYPAFSATGGEGFSISGLNLNLGSGGGGAAITTQTTLRPMQHSPHFAHATMNMGADNDYVDADQNIINNIGVLETMSNGNNNSNGNKYMGMENCMGLDTYWPNSY*