AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385310 MtrunA17_Chr3g0142731 99.333 450 2 1 1 449 1 450 0.0 936
Msa0385310 MtrunA17_Chr2g0292921 94.907 432 20 1 1 432 1 430 0.0 839
Msa0385310 MtrunA17_Chr7g0255791 93.750 432 25 1 1 432 1 430 0.0 833
Msa0385310 MtrunA17_Chr4g0051631 93.981 432 24 1 1 432 1 430 0.0 832
Msa0385310 MtrunA17_Chr1g0203181 93.287 432 27 1 1 432 1 430 0.0 831
Msa0385310 MtrunA17_Chr4g0008401 92.593 432 30 1 1 432 1 430 0.0 827
Msa0385310 MtrunA17_Chr4g0008361 92.361 432 31 1 1 432 1 430 0.0 824
Msa0385310 MtrunA17_Chr8g0386781 92.558 430 30 1 1 430 1 428 0.0 820
Msa0385310 MtrunA17_Chr4g0007371 92.627 434 28 2 1 432 1 432 0.0 820
Msa0385310 MtrunA17_Chr8g0393021 89.640 444 40 3 1 441 1 441 0.0 817
Msa0385310 MtrunA17_Chr8g0378821 40.553 434 250 1 1 426 1 434 1.01e-124 369
Msa0385310 MtrunA17_Chr1g0206881 40.611 458 244 4 1 447 1 441 7.79e-123 365
Msa0385310 MtrunA17_Chr3g0140821 40.220 455 244 4 1 444 1 438 1.23e-122 364
Msa0385310 MtrunA17_Chr4g0054511 40.220 455 244 4 1 444 1 438 2.83e-122 363
Msa0385310 MtrunA17_Chr7g0253411 39.159 452 253 2 1 444 1 438 3.63e-122 363
Msa0385310 MtrunA17_Chr6g0461281 39.955 448 259 3 1 438 1 448 4.57e-122 363
Msa0385310 MtrunA17_Chr2g0300671 36.830 448 267 4 1 440 1 440 1.38e-100 307
Msa0385310 MtrunA17_Chr2g0300491 36.504 452 270 4 1 440 1 447 1.28e-99 306
Msa0385310 MtrunA17_Chr7g0275431 35.498 462 267 10 2 444 3 452 1.17e-96 298
Msa0385310 MtrunA17_Chr3g0109241 30.370 135 86 1 271 397 4 138 1.73e-20 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385310 AT1G75780.1 94.676 432 22 1 1 432 1 431 0.0 840
Msa0385310 AT1G20010.1 94.213 432 24 1 1 432 1 431 0.0 836
Msa0385310 AT5G12250.1 93.287 432 27 1 1 432 1 430 0.0 832
Msa0385310 AT5G23860.2 93.519 432 26 1 1 432 1 430 0.0 831
Msa0385310 AT5G23860.1 93.519 432 26 1 1 432 1 430 0.0 831
Msa0385310 AT5G62690.1 93.287 432 27 1 1 432 1 430 0.0 828
Msa0385310 AT5G62700.1 93.287 432 27 1 1 432 1 430 0.0 828
Msa0385310 AT2G29550.1 93.072 433 28 1 1 433 1 431 0.0 825
Msa0385310 AT5G44340.1 92.361 432 31 1 1 432 1 430 0.0 820
Msa0385310 AT4G20890.1 93.023 430 28 1 1 430 1 428 0.0 819
Msa0385310 AT1G64740.1 40.092 434 252 1 1 426 1 434 2.52e-124 369
Msa0385310 AT5G19780.1 40.323 434 251 1 1 426 1 434 4.99e-124 368
Msa0385310 AT5G19770.1 40.323 434 251 1 1 426 1 434 4.99e-124 368
Msa0385310 AT1G50010.1 40.732 437 245 3 1 426 1 434 3.55e-122 363
Msa0385310 AT1G04820.1 40.732 437 245 3 1 426 1 434 3.55e-122 363
Msa0385310 AT4G14960.2 40.503 437 246 3 1 426 1 434 2.67e-121 361
Msa0385310 AT4G14960.1 40.360 389 218 3 1 378 1 386 6.81e-102 311
Msa0385310 AT5G05620.1 35.065 462 269 10 2 444 3 452 1.17e-95 296
Msa0385310 AT3G61650.1 34.979 466 272 10 2 448 3 456 2.05e-95 295

Find 175 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATGAAGAATGAGATTT+AGG 0.135702 3_1:+88784673 None:intergenic
GGGACAGATAGATTTATTTA+TGG 0.176111 3_1:+88784786 None:intergenic
TCGCTTTGTCTTTGAGAAAA+TGG 0.195099 3_1:-88781172 Msa0385310:three_prime_UTR
CCCAGAATTTGGATCCAATT+TGG 0.211203 3_1:+88784605 None:intergenic
AATCTGGTGCTGGTAATAAT+TGG 0.217101 3_1:-88784360 Msa0385310:CDS
ACCAAATTGGATCCAAATTC+TGG 0.227415 3_1:-88784606 Msa0385310:CDS
GCATATCACCTCCCAGAATT+TGG 0.235569 3_1:+88784594 None:intergenic
TATTACACTTCAAATGAAAT+TGG 0.243042 3_1:+88781327 None:intergenic
GATTTAGGGTTTGGTGTGTT+TGG 0.246640 3_1:+88784688 None:intergenic
CTTGGAGGAGGCACGGGTTC+TGG 0.250950 3_1:-88782479 Msa0385310:CDS
ATTTAGGGTTTGGTGTGTTT+GGG 0.257151 3_1:+88784689 None:intergenic
CACATTTGTTGAGTCAGTTC+CGG 0.265997 3_1:+88781941 None:intergenic
CTTCAATTCAGGAGATGTTT+AGG 0.278983 3_1:-88781685 Msa0385310:CDS
GAATACATTCATAGCTTTAT+AGG 0.282507 3_1:+88781233 None:intergenic
TGGGAACTCAACTTCAATTC+AGG 0.292593 3_1:-88781696 Msa0385310:CDS
ACATGTTGTCTGAGGTTTCC+TGG 0.293676 3_1:-88782091 Msa0385310:CDS
TGTATAGTAATAAAACCATT+AGG 0.296035 3_1:+88781430 None:intergenic
CGTCCTGATAATTTCGTGTT+TGG 0.301654 3_1:-88784385 Msa0385310:CDS
TGTTCCTAGAGCAGTTCTTA+TGG 0.307963 3_1:-88784464 Msa0385310:CDS
GGCCAATGCGGTAACCAAAT+TGG 0.311892 3_1:-88784619 Msa0385310:CDS
GGACGACATCTTCAAATTCT+TGG 0.312961 3_1:+88781727 None:intergenic
ACATTTGTTGAGTCAGTTCC+GGG 0.324818 3_1:+88781942 None:intergenic
AGTATCAGATCTGGTCCTTT+TGG 0.326490 3_1:-88784418 Msa0385310:CDS
GAAGAATGAGATTTAGGGTT+TGG 0.343322 3_1:+88784679 None:intergenic
AGCAGCACACATCATATTCT+TGG 0.353564 3_1:+88781913 None:intergenic
AAGATGAAGAATGAGATTTA+GGG 0.355346 3_1:+88784674 None:intergenic
GATTTGTTCATCAACCTCTT+TGG 0.362636 3_1:+88781832 None:intergenic
GGTAATAATGGAGGGGCGGG+AGG 0.368018 3_1:+88784837 None:intergenic
CTATTGCATCCTGGTATTGT+TGG 0.375777 3_1:+88781534 None:intergenic
ATTCTTCATACTTTGTTGAA+TGG 0.376461 3_1:-88781790 Msa0385310:CDS
CTCTATTGATATCAAAGATT+AGG 0.378228 3_1:-88782448 Msa0385310:CDS
CCCAGTATACCAATGCAAAA+AGG 0.378377 3_1:+88781622 None:intergenic
GTTTCATTTCATTTGTTTCA+AGG 0.382153 3_1:+88784894 None:intergenic
CACTTTATGACATTTGCTTC+AGG 0.383936 3_1:-88782277 Msa0385310:CDS
ACACTAGACTTCACATTGTT+GGG 0.386553 3_1:+88781764 None:intergenic
CACACTAGACTTCACATTGT+TGG 0.390184 3_1:+88781763 None:intergenic
CTATCGGGGTAATGCCCTAA+TGG 0.391267 3_1:-88781445 Msa0385310:three_prime_UTR
TGTCCAAACACGAAATTATC+AGG 0.392526 3_1:+88784382 None:intergenic
TCTATTGATATCAAAGATTA+GGG 0.396270 3_1:-88782447 Msa0385310:CDS
CTCATGCTTCATTTGAAAGC+TGG 0.396801 3_1:-88781086 Msa0385310:three_prime_UTR
CAAGTTTGCCACTCCCTTGG+AGG 0.398051 3_1:-88782494 Msa0385310:CDS
AAGAATAAAAGAAAAGCTTA+TGG 0.400250 3_1:+88781376 None:intergenic
AGAGAGTAACATGAATGATT+TGG 0.405537 3_1:-88781567 Msa0385310:CDS
CACTCCCTTGGAGGAGGCAC+GGG 0.410186 3_1:-88782485 Msa0385310:CDS
TTTCAAGTTTGCCACTCCCT+TGG 0.411514 3_1:-88782497 Msa0385310:CDS
AGCAGTTTACTGCAATGTTC+CGG 0.413290 3_1:-88781652 Msa0385310:CDS
ATGGAAAGAGAGGGAAATGC+GGG 0.413953 3_1:+88784805 None:intergenic
ACAGATAGTGTAGCATTATA+TGG 0.417861 3_1:+88782350 None:intergenic
AATTTCGTGTTTGGACAATC+TGG 0.419616 3_1:-88784376 Msa0385310:CDS
GACGACATCTTCAAATTCTT+GGG 0.419923 3_1:+88781728 None:intergenic
AGTCAAGTATCGGCCATGTC+GGG 0.423301 3_1:+88781886 None:intergenic
TCTTGGAGTAAGGGACTTGA+TGG 0.427904 3_1:+88781109 None:intergenic
GTATAGTAATAAAACCATTA+GGG 0.428564 3_1:+88781431 None:intergenic
AGAGAGATCTTGCACGTTCA+AGG 0.432109 3_1:-88784643 Msa0385310:CDS
GTGTATTACAATGAAGCTTC+TGG 0.433261 3_1:-88784496 Msa0385310:CDS
ATCTGGTGCTGGTAATAATT+GGG 0.444114 3_1:-88784359 Msa0385310:CDS
ACAACTGTGTCAGATACCTT+TGG 0.444799 3_1:+88782377 None:intergenic
GGAGGCACGGGTTCTGGCAT+GGG 0.445967 3_1:-88782473 Msa0385310:CDS
AGATTTATTTATGGAAAGAG+AGG 0.446051 3_1:+88784795 None:intergenic
CTGAATGCGTCCTGTCAGAC+AGG 0.447758 3_1:-88781278 Msa0385310:three_prime_UTR
GTCAATCAACTCAGCACCTT+CGG 0.448375 3_1:+88784321 None:intergenic
ACCTTCGGTATAATGACCTT+TGG 0.450279 3_1:+88784336 None:intergenic
GAAGCATGAGTCTTGGAGTA+AGG 0.450845 3_1:+88781099 None:intergenic
GTCAATTGAACTCTGATCTC+AGG 0.457782 3_1:-88782069 Msa0385310:CDS
TTTCATTTCATTTGTTTCAA+GGG 0.458775 3_1:+88784895 None:intergenic
TTGGTATACTGGGGAGGGAA+TGG 0.459874 3_1:-88781612 Msa0385310:CDS
TTCAAATGAAGCATGAGTCT+TGG 0.462295 3_1:+88781092 None:intergenic
TTCTCAAAGACAAAGCGAAT+AGG 0.466949 3_1:+88781177 None:intergenic
TGAAATGAAATGAAATGAAA+TGG 0.467125 3_1:+88784721 None:intergenic
CCACTCCCTTGGAGGAGGCA+CGG 0.467869 3_1:-88782486 Msa0385310:CDS
ATCCAATTTGGTTACCGCAT+TGG 0.468483 3_1:+88784617 None:intergenic
CCTCCTCAGCTATTGCATCC+TGG 0.470174 3_1:+88781525 None:intergenic
AAAGTAAGCATCATTCTGTC+TGG 0.471664 3_1:+88782416 None:intergenic
CCAAATTGGATCCAAATTCT+GGG 0.472580 3_1:-88784605 Msa0385310:CDS
AGAAGGTGAGGAACATTATG+AGG 0.473711 3_1:-88781486 Msa0385310:CDS
GAGTCAGTTCCGGGACAGTA+AGG 0.474292 3_1:+88781951 None:intergenic
AGGTGGAAATGATACTCAAT+TGG 0.476330 3_1:-88784530 Msa0385310:CDS
AGGAGGCACGGGTTCTGGCA+TGG 0.476981 3_1:-88782474 Msa0385310:CDS
TACACTATCTGTCCACCAAC+TGG 0.477941 3_1:-88782339 Msa0385310:CDS
TGATTTCTGCAACTATGAGC+GGG 0.478950 3_1:-88782117 Msa0385310:CDS
ACATTATGAGGAGCAGTAGC+TGG 0.483996 3_1:-88781474 Msa0385310:exon
GGTTAATATGGTAATAATGG+AGG 0.488429 3_1:+88784828 None:intergenic
GAGAATTGTGATTGCTTGCA+AGG 0.495773 3_1:-88784268 Msa0385310:intron
TTTGCACCTCTCACTTCTCG+TGG 0.496790 3_1:-88781992 Msa0385310:CDS
GAACACGGCATTGATCCAAC+TGG 0.497409 3_1:-88784568 Msa0385310:CDS
AGTTGAGTTCCCAATAAAAG+TGG 0.497826 3_1:+88781706 None:intergenic
ATCGAGTGTAAAGCAAAGAT+AGG 0.499869 3_1:+88781133 None:intergenic
GAAGATGATTATGAAGAAGA+AGG 0.502318 3_1:-88781503 Msa0385310:CDS
AAAAGTGAAGACGAGGGAAT+GGG 0.507198 3_1:+88782026 None:intergenic
AGTAGCTGGATCAAACTATC+GGG 0.507378 3_1:-88781460 Msa0385310:exon
GTGTCAGATACCTTTGGAGA+TGG 0.509553 3_1:+88782383 None:intergenic
CAGTAGCTGGATCAAACTAT+CGG 0.516295 3_1:-88781461 Msa0385310:exon
TTGCATTGGTATACTGGGGA+GGG 0.517335 3_1:-88781617 Msa0385310:CDS
CCGTGCCTCCTCCAAGGGAG+TGG 0.517493 3_1:+88782486 None:intergenic
GTTCTTATGGATCTTGAGCC+TGG 0.519442 3_1:-88784451 Msa0385310:CDS
GAAATAGTGTGCATGCCGTT+TGG 0.520155 3_1:-88781048 Msa0385310:three_prime_UTR
CTGATACTTTCCATGGTACC+AGG 0.522407 3_1:+88784433 None:intergenic
TGATTATCTTCTCAACCAAA+CGG 0.525031 3_1:+88781033 None:intergenic
ATAGAATAACCCTGTCTGAC+AGG 0.525232 3_1:+88781268 None:intergenic
GTGTTTGGACAATCTGGTGC+TGG 0.529479 3_1:-88784370 Msa0385310:CDS
TGGGGAGGGAATGGATGAGA+TGG 0.529822 3_1:-88781603 Msa0385310:CDS
TATGGTAATAATGGAGGGGC+GGG 0.531460 3_1:+88784834 None:intergenic
GTTTGCCACTCCCTTGGAGG+AGG 0.531497 3_1:-88782491 Msa0385310:CDS
GTAATAATGGAGGGGCGGGA+GGG 0.531878 3_1:+88784838 None:intergenic
ACCATGGAAAGTATCAGATC+TGG 0.532094 3_1:-88784427 Msa0385310:CDS
GGAAAATATGTAAGCGAAGG+TGG 0.533206 3_1:-88784547 Msa0385310:CDS
TTAATATGGTAATAATGGAG+GGG 0.533737 3_1:+88784830 None:intergenic
GAACTCTGATCTCAGGAAGC+TGG 0.535008 3_1:-88782062 Msa0385310:CDS
TGTCAGATACCTTTGGAGAT+GGG 0.536713 3_1:+88782384 None:intergenic
GGATCTTGAGCCTGGTACCA+TGG 0.537137 3_1:-88784443 Msa0385310:CDS
TTTAGGGTTTGGTGTGTTTG+GGG 0.538731 3_1:+88784690 None:intergenic
TATCTGTCCCTCTCTTCGAT+TGG 0.540481 3_1:-88784773 Msa0385310:five_prime_UTR
CAATTCAGGAGATGTTTAGG+AGG 0.541715 3_1:-88781682 Msa0385310:CDS
CAGAACCCGTGCCTCCTCCA+AGG 0.541892 3_1:+88782480 None:intergenic
CAGTCAAGTATCGGCCATGT+CGG 0.542390 3_1:+88781885 None:intergenic
AGATCCATAAGAACTGCTCT+AGG 0.542823 3_1:+88784460 None:intergenic
AGAGGTGATACTTACAGCTA+GGG 0.546469 3_1:+88782237 None:intergenic
AATGGATGAGATGGAGTTCA+CGG 0.548252 3_1:-88781594 Msa0385310:CDS
GGACGAAAGATCTTACCAAA+AGG 0.548367 3_1:+88784403 None:intergenic
AAGCATGAGTCTTGGAGTAA+GGG 0.549329 3_1:+88781100 None:intergenic
TATGGAAAGAGAGGGAAATG+CGG 0.552645 3_1:+88784804 None:intergenic
GTATGTATCCCTTACTGTCC+CGG 0.555378 3_1:-88781960 Msa0385310:CDS
TTGCACCTCTCACTTCTCGT+GGG 0.556219 3_1:-88781991 Msa0385310:CDS
AGAAAATGCAGATGAGTGTA+TGG 0.557071 3_1:-88782315 Msa0385310:CDS
CGGAACTGACTCAACAAATG+TGG 0.558969 3_1:-88781940 Msa0385310:CDS
TTGCAGATGCAGTCAAGTAT+CGG 0.563760 3_1:+88781876 None:intergenic
GTTAATATGGTAATAATGGA+GGG 0.563897 3_1:+88784829 None:intergenic
GACATCTTCAAATTCTTGGG+TGG 0.565762 3_1:+88781731 None:intergenic
ACATCTTCAAATTCTTGGGT+GGG 0.570008 3_1:+88781732 None:intergenic
TTTGAGAAAATGGTTGCACT+TGG 0.570956 3_1:-88781162 Msa0385310:three_prime_UTR
ACCAGATCTGATACTTTCCA+TGG 0.574855 3_1:+88784426 None:intergenic
TTTGCATTGGTATACTGGGG+AGG 0.575042 3_1:-88781618 Msa0385310:CDS
CCAGGATGCAATAGCTGAGG+AGG 0.575079 3_1:-88781525 Msa0385310:CDS
TGATTATGAAGAAGAAGGTG+AGG 0.578671 3_1:-88781498 Msa0385310:CDS
GCTGGTAATAATTGGGCCAA+AGG 0.579903 3_1:-88784352 Msa0385310:CDS
AGAACCCGTGCCTCCTCCAA+GGG 0.582447 3_1:+88782481 None:intergenic
GATTTATTTATGGAAAGAGA+GGG 0.584606 3_1:+88784796 None:intergenic
AGATCAGAGTTCAATTGACC+AGG 0.587313 3_1:+88782073 None:intergenic
ACTGCATCTGCAATGTTCAG+AGG 0.592344 3_1:-88781866 Msa0385310:CDS
AGCGGTTCCAATCGAAGAGA+GGG 0.594080 3_1:+88784766 None:intergenic
AATTCAGGAGATGTTTAGGA+GGG 0.594241 3_1:-88781681 Msa0385310:CDS
AACAAATGAAATGAAACGAA+CGG 0.594732 3_1:-88784888 Msa0385310:five_prime_UTR
GCTGTAGTAGATACACAGAT+AGG 0.595672 3_1:+88781398 None:intergenic
GTCAAGTATCGGCCATGTCG+GGG 0.598025 3_1:+88781887 None:intergenic
CTGATTTCTGCAACTATGAG+CGG 0.598763 3_1:-88782118 Msa0385310:CDS
AGCAGAGTACCAACAATACC+AGG 0.600651 3_1:-88781543 Msa0385310:CDS
GCGGGGTTACATGTTGTCTG+AGG 0.600876 3_1:-88782099 Msa0385310:CDS
AGTCAGTTCCGGGACAGTAA+GGG 0.601789 3_1:+88781952 None:intergenic
GAAATGATACTCAATTGGAA+AGG 0.601847 3_1:-88784525 Msa0385310:CDS
ATATGGTAATAATGGAGGGG+CGG 0.602777 3_1:+88784833 None:intergenic
GGAACTGACTCAACAAATGT+GGG 0.606867 3_1:-88781939 Msa0385310:CDS
ACAATGAAGCTTCTGGTGGT+AGG 0.609506 3_1:-88784489 Msa0385310:CDS
GCCAAAGGTCATTATACCGA+AGG 0.611568 3_1:-88784337 Msa0385310:CDS
TCATAGTTGCAGAAATCAGA+TGG 0.613887 3_1:+88782122 None:intergenic
AACAAAAGAATATGATTGAG+CGG 0.615012 3_1:+88784748 None:intergenic
GAGCGGTTCCAATCGAAGAG+AGG 0.617083 3_1:+88784765 None:intergenic
CACGTTCAAGGTGGCCAATG+CGG 0.629178 3_1:-88784631 Msa0385310:CDS
ACTGGAAAATATGTAAGCGA+AGG 0.632683 3_1:-88784550 Msa0385310:CDS
CAAAGACAAAGCGAATAGGT+AGG 0.633490 3_1:+88781181 None:intergenic
TGTGCTGCTGATCCCCGACA+TGG 0.635297 3_1:-88781899 Msa0385310:CDS
TGGAAAGAGAGGGAAATGCG+GGG 0.638492 3_1:+88784806 None:intergenic
AGGAAAGATGAGCACCAAAG+AGG 0.640000 3_1:-88781846 Msa0385310:CDS
TGAGACCCACGAGAAGTGAG+AGG 0.646294 3_1:+88781986 None:intergenic
TGAATGCGTCCTGTCAGACA+GGG 0.651862 3_1:-88781277 Msa0385310:three_prime_UTR
ATTGATATCAAAGATTAGGG+AGG 0.653042 3_1:-88782444 Msa0385310:CDS
GATTTCTGCAACTATGAGCG+GGG 0.659247 3_1:-88782116 Msa0385310:CDS
GGAAAGAGAGGGAAATGCGG+GGG 0.664393 3_1:+88784807 None:intergenic
ATACCAGGATGCAATAGCTG+AGG 0.682886 3_1:-88781528 Msa0385310:CDS
GAGGTGATACTTACAGCTAG+GGG 0.687744 3_1:+88782238 None:intergenic
GTAGCTGGATCAAACTATCG+GGG 0.708017 3_1:-88781459 Msa0385310:exon
GAGGTGATATGCGATGAACA+CGG 0.708035 3_1:-88784583 Msa0385310:CDS
GAGATCTTGCACGTTCAAGG+TGG 0.713098 3_1:-88784640 Msa0385310:CDS
TATTACAATGAAGCTTCTGG+TGG 0.730410 3_1:-88784493 Msa0385310:CDS
AATTGGATCCAAATTCTGGG+AGG 0.748217 3_1:-88784602 Msa0385310:CDS
GGATGAGATGGAGTTCACGG+AGG 0.764427 3_1:-88781591 Msa0385310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTATTTATAAAAT+AGG - chr3_1:88782198-88782217 Msa0385310:intron 0.0%
!!! ATTTTTATTTTGTTTTGTTT+TGG + chr3_1:88781043-88781062 None:intergenic 10.0%
!!! GAAAAATAATAACTTTTTTT+TGG + chr3_1:88782302-88782321 None:intergenic 10.0%
!!! AGAACTAATTTTTATAAAAA+TGG - chr3_1:88782479-88782498 Msa0385310:CDS 10.0%
!!! CATAAAATCTATTTTTTTAA+AGG - chr3_1:88782583-88782602 Msa0385310:intron 10.0%
!! ATCAATTATAAAAAAAGTAA+AGG + chr3_1:88782622-88782641 None:intergenic 10.0%
!!! TTTTTGTGTAATAATAATGA+TGG - chr3_1:88782018-88782037 Msa0385310:CDS 15.0%
!!! TAATAATGATGGTATATTTT+AGG - chr3_1:88782029-88782048 Msa0385310:CDS 15.0%
!!! AATAATGATGGTATATTTTA+GGG - chr3_1:88782030-88782049 Msa0385310:CDS 15.0%
!! TGAAATGAAATGAAATGAAA+TGG + chr3_1:88781185-88781204 None:intergenic 20.0%
!! TATTATTACACAAAAAGTCA+CGG + chr3_1:88782014-88782033 None:intergenic 20.0%
!! TTCATTTCAATTGTTTGTTT+AGG - chr3_1:88782339-88782358 Msa0385310:CDS 20.0%
!!! AATGGTTTTTTATGAATAGT+AGG - chr3_1:88782497-88782516 Msa0385310:CDS 20.0%
!! TTCTACCAAAAAAAAAATCA+TGG - chr3_1:88782710-88782729 Msa0385310:intron 20.0%
!! AATTCCAATGTTTGTAAAAA+TGG + chr3_1:88782768-88782787 None:intergenic 20.0%
!! AAAAAGAACAATATATTTCG+TGG + chr3_1:88782855-88782874 None:intergenic 20.0%
!!! AAATTTCATTCAATTTTGTC+AGG - chr3_1:88783382-88783401 Msa0385310:intron 20.0%
!! TCTATTGATATCAAAGATTA+GGG - chr3_1:88783456-88783475 Msa0385310:intron 20.0%
!! GTATAGTAATAAAACCATTA+GGG + chr3_1:88784475-88784494 None:intergenic 20.0%
!! TGTATAGTAATAAAACCATT+AGG + chr3_1:88784476-88784495 None:intergenic 20.0%
!! AAGAATAAAAGAAAAGCTTA+TGG + chr3_1:88784530-88784549 None:intergenic 20.0%
!! TATTACACTTCAAATGAAAT+TGG + chr3_1:88784579-88784598 None:intergenic 20.0%
! GTTTCATTTCATTTGTTTCA+AGG + chr3_1:88781012-88781031 None:intergenic 25.0%
! AACAAATGAAATGAAACGAA+CGG - chr3_1:88781015-88781034 Msa0385310:three_prime_UTR 25.0%
!! TTAATATGGTAATAATGGAG+GGG + chr3_1:88781076-88781095 None:intergenic 25.0%
!! GTTAATATGGTAATAATGGA+GGG + chr3_1:88781077-88781096 None:intergenic 25.0%
! GATTTATTTATGGAAAGAGA+GGG + chr3_1:88781110-88781129 None:intergenic 25.0%
! AGATTTATTTATGGAAAGAG+AGG + chr3_1:88781111-88781130 None:intergenic 25.0%
! AACAAAAGAATATGATTGAG+CGG + chr3_1:88781158-88781177 None:intergenic 25.0%
! AAGATGAAGAATGAGATTTA+GGG + chr3_1:88781232-88781251 None:intergenic 25.0%
!! AGAGGATCTAATTCAATTTT+TGG - chr3_1:88781889-88781908 Msa0385310:CDS 25.0%
!! GAGGATCTAATTCAATTTTT+GGG - chr3_1:88781890-88781909 Msa0385310:CDS 25.0%
! TCATTCTGAGTACAAAATAT+AGG + chr3_1:88781986-88782005 None:intergenic 25.0%
! TTGATATGTCAGATATGATA+CGG - chr3_1:88782054-88782073 Msa0385310:CDS 25.0%
! ATGCACTACTATAAAAGATA+AGG + chr3_1:88782173-88782192 None:intergenic 25.0%
! TTAAATAAAACATACCGACA+TGG - chr3_1:88782243-88782262 Msa0385310:intron 25.0%
! GAAAAAAATCTGAATCAAAC+AGG + chr3_1:88782280-88782299 None:intergenic 25.0%
!! GCTAATAGCTTTTCATTTTA+AGG + chr3_1:88782406-88782425 None:intergenic 25.0%
! TGCCAAAAGAAAAATAATAC+CGG + chr3_1:88782689-88782708 None:intergenic 25.0%
!!! TTTTTAAGAAAGTAGACTGA+AGG - chr3_1:88782953-88782972 Msa0385310:intron 25.0%
!!! TTTTAAGAAAGTAGACTGAA+GGG - chr3_1:88782954-88782973 Msa0385310:intron 25.0%
! AATAGAGAGAAAATCTTATG+TGG - chr3_1:88783033-88783052 Msa0385310:intron 25.0%
! TTTGTAATATGTCACAGAAT+TGG - chr3_1:88783265-88783284 Msa0385310:intron 25.0%
! TGATCTTTATGTTAGATTTG+TGG - chr3_1:88783323-88783342 Msa0385310:intron 25.0%
! CTCTATTGATATCAAAGATT+AGG - chr3_1:88783455-88783474 Msa0385310:intron 25.0%
! ATTCTTCATACTTTGTTGAA+TGG - chr3_1:88784113-88784132 Msa0385310:intron 25.0%
!!! GAATACATTCATAGCTTTAT+AGG + chr3_1:88784673-88784692 None:intergenic 25.0%
! AAGCTGGAAAAAAAAATGTA+TGG - chr3_1:88784833-88784852 Msa0385310:five_prime_UTR 25.0%
! TTGAGAAGATAATCAAAAAG+TGG - chr3_1:88784878-88784897 Msa0385310:five_prime_UTR 25.0%
GGTTAATATGGTAATAATGG+AGG + chr3_1:88781078-88781097 None:intergenic 30.0%
GGGACAGATAGATTTATTTA+TGG + chr3_1:88781120-88781139 None:intergenic 30.0%
GAAGATGAAGAATGAGATTT+AGG + chr3_1:88781233-88781252 None:intergenic 30.0%
GAAATGATACTCAATTGGAA+AGG - chr3_1:88781378-88781397 Msa0385310:three_prime_UTR 30.0%
CTCAATTGTGATTAATGTCT+TGG - chr3_1:88781683-88781702 Msa0385310:CDS 30.0%
TACTTCAATTACTATACTGC+AGG + chr3_1:88781840-88781859 None:intergenic 30.0%
! GAAACATGATGATGATTGAA+AGG - chr3_1:88782131-88782150 Msa0385310:CDS 30.0%
CACTACTATAAAAGATAAGG+TGG + chr3_1:88782170-88782189 None:intergenic 30.0%
ATTGATTGTAGTCACAGAAA+TGG - chr3_1:88782636-88782655 Msa0385310:intron 30.0%
TTGATTGTAGTCACAGAAAT+GGG - chr3_1:88782637-88782656 Msa0385310:intron 30.0%
!! GACCGGTATTATTTTTCTTT+TGG - chr3_1:88782684-88782703 Msa0385310:intron 30.0%
!!! ACGTGCCATGATTTTTTTTT+TGG + chr3_1:88782718-88782737 None:intergenic 30.0%
CCAATGTTTGTAAAAATGGT+TGG + chr3_1:88782764-88782783 None:intergenic 30.0%
!! CCAACCATTTTTACAAACAT+TGG - chr3_1:88782761-88782780 Msa0385310:intron 30.0%
! TACATTGGTTATTCTACAGA+TGG + chr3_1:88782829-88782848 None:intergenic 30.0%
TATATTTCGTGGATCTACAT+TGG + chr3_1:88782844-88782863 None:intergenic 30.0%
AGTGTTTCTCAACAATAGAA+TGG - chr3_1:88783214-88783233 Msa0385310:intron 30.0%
GTGTTTCTCAACAATAGAAT+GGG - chr3_1:88783215-88783234 Msa0385310:intron 30.0%
TGTTTCTCAACAATAGAATG+GGG - chr3_1:88783216-88783235 Msa0385310:intron 30.0%
ATTGATATCAAAGATTAGGG+AGG - chr3_1:88783459-88783478 Msa0385310:intron 30.0%
ACAGATAGTGTAGCATTATA+TGG + chr3_1:88783556-88783575 None:intergenic 30.0%
TCAGTACCTCAATTAATCAA+AGG - chr3_1:88783695-88783714 Msa0385310:intron 30.0%
AGACAACCTTTGATTAATTG+AGG + chr3_1:88783704-88783723 None:intergenic 30.0%
AGAGAGTAACATGAATGATT+TGG - chr3_1:88784336-88784355 Msa0385310:CDS 30.0%
GAAGATGATTATGAAGAAGA+AGG - chr3_1:88784400-88784419 Msa0385310:CDS 30.0%
TGATTATCTTCTCAACCAAA+CGG + chr3_1:88784873-88784892 None:intergenic 30.0%
GGGGGTTAATATGGTAATAA+TGG + chr3_1:88781081-88781100 None:intergenic 35.0%
!! ATTTAGGGTTTGGTGTGTTT+GGG + chr3_1:88781217-88781236 None:intergenic 35.0%
! GAAGAATGAGATTTAGGGTT+TGG + chr3_1:88781227-88781246 None:intergenic 35.0%
ACCAAATTGGATCCAAATTC+TGG - chr3_1:88781297-88781316 Msa0385310:three_prime_UTR 35.0%
CCAAATTGGATCCAAATTCT+GGG - chr3_1:88781298-88781317 Msa0385310:three_prime_UTR 35.0%
! TCGCTTACATATTTTCCAGT+TGG + chr3_1:88781353-88781372 None:intergenic 35.0%
ACTGGAAAATATGTAAGCGA+AGG - chr3_1:88781353-88781372 Msa0385310:three_prime_UTR 35.0%
AGGTGGAAATGATACTCAAT+TGG - chr3_1:88781373-88781392 Msa0385310:three_prime_UTR 35.0%
GTGTATTACAATGAAGCTTC+TGG - chr3_1:88781407-88781426 Msa0385310:three_prime_UTR 35.0%
TATTACAATGAAGCTTCTGG+TGG - chr3_1:88781410-88781429 Msa0385310:three_prime_UTR 35.0%
TGTCCAAACACGAAATTATC+AGG + chr3_1:88781524-88781543 None:intergenic 35.0%
AATTTCGTGTTTGGACAATC+TGG - chr3_1:88781527-88781546 Msa0385310:CDS 35.0%
!! AATCTGGTGCTGGTAATAAT+TGG - chr3_1:88781543-88781562 Msa0385310:CDS 35.0%
!! ATCTGGTGCTGGTAATAATT+GGG - chr3_1:88781544-88781563 Msa0385310:CDS 35.0%
AATCGTCACGATTTCAATCA+TGG + chr3_1:88781787-88781806 None:intergenic 35.0%
!! TACTGACTTTCTGTAGATCT+TGG - chr3_1:88782108-88782127 Msa0385310:CDS 35.0%
! ACTGACTTTCTGTAGATCTT+GGG - chr3_1:88782109-88782128 Msa0385310:CDS 35.0%
ATACCGACATGGAGTATATA+GGG - chr3_1:88782254-88782273 Msa0385310:CDS 35.0%
GAAAAATAATACCGGTCTGT+CGG + chr3_1:88782681-88782700 None:intergenic 35.0%
!!! CAAGACCAAGAATTTTGGTT+TGG - chr3_1:88783057-88783076 Msa0385310:intron 35.0%
TGTGACCAAACCAAAATTCT+TGG + chr3_1:88783177-88783196 None:intergenic 35.0%
TGTGACCAAACCAAAATTCT+TGG - chr3_1:88783177-88783196 Msa0385310:intron 35.0%
ATTGTTGAGAAACACTTGTG+TGG + chr3_1:88783210-88783229 None:intergenic 35.0%
AAAGTAAGCATCATTCTGTC+TGG + chr3_1:88783490-88783509 None:intergenic 35.0%
AGAAAATGCAGATGAGTGTA+TGG - chr3_1:88783588-88783607 Msa0385310:intron 35.0%
CACTTTATGACATTTGCTTC+AGG - chr3_1:88783626-88783645 Msa0385310:intron 35.0%
!! TTGAGGTACTGAAAAAGAAG+AGG + chr3_1:88783687-88783706 None:intergenic 35.0%
CTCATTGTGTAATTGCAGTT+GGG - chr3_1:88783750-88783769 Msa0385310:intron 35.0%
TCATTGTGTAATTGCAGTTG+GGG - chr3_1:88783751-88783770 Msa0385310:intron 35.0%
TCATAGTTGCAGAAATCAGA+TGG + chr3_1:88783784-88783803 None:intergenic 35.0%
CCATAAAAAAGTGAAGACGA+GGG + chr3_1:88783886-88783905 None:intergenic 35.0%
ACCATAAAAAAGTGAAGACG+AGG + chr3_1:88783887-88783906 None:intergenic 35.0%
!!! CGTCTTCACTTTTTTATGGT+TGG - chr3_1:88783887-88783906 Msa0385310:intron 35.0%
! GATTTGTTCATCAACCTCTT+TGG + chr3_1:88784074-88784093 None:intergenic 35.0%
ACACTAGACTTCACATTGTT+GGG + chr3_1:88784142-88784161 None:intergenic 35.0%
ACATCTTCAAATTCTTGGGT+GGG + chr3_1:88784174-88784193 None:intergenic 35.0%
GACGACATCTTCAAATTCTT+GGG + chr3_1:88784178-88784197 None:intergenic 35.0%
!! AAGATGTCGTCCACTTTTAT+TGG - chr3_1:88784187-88784206 Msa0385310:intron 35.0%
!! AGATGTCGTCCACTTTTATT+GGG - chr3_1:88784188-88784207 Msa0385310:intron 35.0%
AGTTGAGTTCCCAATAAAAG+TGG + chr3_1:88784200-88784219 None:intergenic 35.0%
CTTCAATTCAGGAGATGTTT+AGG - chr3_1:88784218-88784237 Msa0385310:intron 35.0%
AATTCAGGAGATGTTTAGGA+GGG - chr3_1:88784222-88784241 Msa0385310:intron 35.0%
!! CCTTTTTGCATTGGTATACT+GGG - chr3_1:88784281-88784300 Msa0385310:CDS 35.0%
!! CTTTTTGCATTGGTATACTG+GGG - chr3_1:88784282-88784301 Msa0385310:CDS 35.0%
TGATTATGAAGAAGAAGGTG+AGG - chr3_1:88784405-88784424 Msa0385310:CDS 35.0%
TTCTCAAAGACAAAGCGAAT+AGG + chr3_1:88784729-88784748 None:intergenic 35.0%
! TCGCTTTGTCTTTGAGAAAA+TGG - chr3_1:88784731-88784750 Msa0385310:five_prime_UTR 35.0%
TTTGAGAAAATGGTTGCACT+TGG - chr3_1:88784741-88784760 Msa0385310:five_prime_UTR 35.0%
ATCGAGTGTAAAGCAAAGAT+AGG + chr3_1:88784773-88784792 None:intergenic 35.0%
TTCAAATGAAGCATGAGTCT+TGG + chr3_1:88784814-88784833 None:intergenic 35.0%
! ATATGGTAATAATGGAGGGG+CGG + chr3_1:88781073-88781092 None:intergenic 40.0%
TATGGAAAGAGAGGGAAATG+CGG + chr3_1:88781102-88781121 None:intergenic 40.0%
!! TTTAGGGTTTGGTGTGTTTG+GGG + chr3_1:88781216-88781235 None:intergenic 40.0%
!! GATTTAGGGTTTGGTGTGTT+TGG + chr3_1:88781218-88781237 None:intergenic 40.0%
ATCCAATTTGGTTACCGCAT+TGG + chr3_1:88781289-88781308 None:intergenic 40.0%
CCCAGAATTTGGATCCAATT+TGG + chr3_1:88781301-88781320 None:intergenic 40.0%
AATTGGATCCAAATTCTGGG+AGG - chr3_1:88781301-88781320 Msa0385310:three_prime_UTR 40.0%
GGAAAATATGTAAGCGAAGG+TGG - chr3_1:88781356-88781375 Msa0385310:three_prime_UTR 40.0%
TGTTCCTAGAGCAGTTCTTA+TGG - chr3_1:88781439-88781458 Msa0385310:three_prime_UTR 40.0%
AGATCCATAAGAACTGCTCT+AGG + chr3_1:88781446-88781465 None:intergenic 40.0%
!! ACCATGGAAAGTATCAGATC+TGG - chr3_1:88781476-88781495 Msa0385310:exon 40.0%
ACCAGATCTGATACTTTCCA+TGG + chr3_1:88781480-88781499 None:intergenic 40.0%
! AGTATCAGATCTGGTCCTTT+TGG - chr3_1:88781485-88781504 Msa0385310:CDS 40.0%
GGACGAAAGATCTTACCAAA+AGG + chr3_1:88781503-88781522 None:intergenic 40.0%
CGTCCTGATAATTTCGTGTT+TGG - chr3_1:88781518-88781537 Msa0385310:CDS 40.0%
ACCTTCGGTATAATGACCTT+TGG + chr3_1:88781570-88781589 None:intergenic 40.0%
GAGAATTGTGATTGCTTGCA+AGG - chr3_1:88781635-88781654 Msa0385310:CDS 40.0%
TTGAAATCGTGACGATTCAG+AGG - chr3_1:88781790-88781809 Msa0385310:CDS 40.0%
! GTGCACTCTGAAAATTCTAG+AGG - chr3_1:88781871-88781890 Msa0385310:CDS 40.0%
! ATGATGATTGAAAGGCATGC+AGG - chr3_1:88782139-88782158 Msa0385310:intron 40.0%
CATACCGACATGGAGTATAT+AGG - chr3_1:88782253-88782272 Msa0385310:CDS 40.0%
AGTAGTGTTACACAGAGCTA+TGG - chr3_1:88782986-88783005 Msa0385310:intron 40.0%
TATGGTCAAGGTTTCCTAAC+TGG - chr3_1:88783004-88783023 Msa0385310:intron 40.0%
ATGGTCAAGGTTTCCTAACT+GGG - chr3_1:88783005-88783024 Msa0385310:intron 40.0%
TCTCTATTGTTTGCCCAGTT+AGG + chr3_1:88783021-88783040 None:intergenic 40.0%
! GTGGTCAAGACCAAGAATTT+TGG - chr3_1:88783052-88783071 Msa0385310:intron 40.0%
AAGAGAGAAGAGAGAGAAGA+GGG - chr3_1:88783096-88783115 Msa0385310:intron 40.0%
!!! CTGGACCAAGAATTTTGGTT+TGG + chr3_1:88783185-88783204 None:intergenic 40.0%
CAAACCAAAATTCTTGGTCC+AGG - chr3_1:88783183-88783202 Msa0385310:intron 40.0%
! TGTCAGATACCTTTGGAGAT+GGG + chr3_1:88783522-88783541 None:intergenic 40.0%
ACAACTGTGTCAGATACCTT+TGG + chr3_1:88783529-88783548 None:intergenic 40.0%
! CATCTGCATTTTCTACCAGT+TGG + chr3_1:88783582-88783601 None:intergenic 40.0%
AGAGGTGATACTTACAGCTA+GGG + chr3_1:88783669-88783688 None:intergenic 40.0%
AAGAGGTGATACTTACAGCT+AGG + chr3_1:88783670-88783689 None:intergenic 40.0%
CCAACTGCAATTACACAATG+AGG + chr3_1:88783752-88783771 None:intergenic 40.0%
CCTCATTGTGTAATTGCAGT+TGG - chr3_1:88783749-88783768 Msa0385310:intron 40.0%
CTGATTTCTGCAACTATGAG+CGG - chr3_1:88783785-88783804 Msa0385310:intron 40.0%
TGATTTCTGCAACTATGAGC+GGG - chr3_1:88783786-88783805 Msa0385310:intron 40.0%
AGATCAGAGTTCAATTGACC+AGG + chr3_1:88783833-88783852 None:intergenic 40.0%
GTCAATTGAACTCTGATCTC+AGG - chr3_1:88783834-88783853 Msa0385310:intron 40.0%
AAAAGTGAAGACGAGGGAAT+GGG + chr3_1:88783880-88783899 None:intergenic 40.0%
AAAAAGTGAAGACGAGGGAA+TGG + chr3_1:88783881-88783900 None:intergenic 40.0%
!!! CCCTCGTCTTCACTTTTTTA+TGG - chr3_1:88783883-88783902 Msa0385310:intron 40.0%
! ACATTTGTTGAGTCAGTTCC+GGG + chr3_1:88783964-88783983 None:intergenic 40.0%
! CACATTTGTTGAGTCAGTTC+CGG + chr3_1:88783965-88783984 None:intergenic 40.0%
! GGAACTGACTCAACAAATGT+GGG - chr3_1:88783964-88783983 Msa0385310:intron 40.0%
AGCAGCACACATCATATTCT+TGG + chr3_1:88783993-88784012 None:intergenic 40.0%
TTGCAGATGCAGTCAAGTAT+CGG + chr3_1:88784030-88784049 None:intergenic 40.0%
CACACTAGACTTCACATTGT+TGG + chr3_1:88784143-88784162 None:intergenic 40.0%
GACATCTTCAAATTCTTGGG+TGG + chr3_1:88784175-88784194 None:intergenic 40.0%
GGACGACATCTTCAAATTCT+TGG + chr3_1:88784179-88784198 None:intergenic 40.0%
TGGGAACTCAACTTCAATTC+AGG - chr3_1:88784207-88784226 Msa0385310:intron 40.0%
CAATTCAGGAGATGTTTAGG+AGG - chr3_1:88784221-88784240 Msa0385310:intron 40.0%
AGCAGTTTACTGCAATGTTC+CGG - chr3_1:88784251-88784270 Msa0385310:intron 40.0%
!! GCCTTTTTGCATTGGTATAC+TGG - chr3_1:88784280-88784299 Msa0385310:CDS 40.0%
CCCAGTATACCAATGCAAAA+AGG + chr3_1:88784284-88784303 None:intergenic 40.0%
AATGGATGAGATGGAGTTCA+CGG - chr3_1:88784309-88784328 Msa0385310:CDS 40.0%
CTATTGCATCCTGGTATTGT+TGG + chr3_1:88784372-88784391 None:intergenic 40.0%
AGAAGGTGAGGAACATTATG+AGG - chr3_1:88784417-88784436 Msa0385310:CDS 40.0%
CAGTAGCTGGATCAAACTAT+CGG - chr3_1:88784442-88784461 Msa0385310:CDS 40.0%
AGTAGCTGGATCAAACTATC+GGG - chr3_1:88784443-88784462 Msa0385310:CDS 40.0%
GCTGTAGTAGATACACAGAT+AGG + chr3_1:88784508-88784527 None:intergenic 40.0%
ATAGAATAACCCTGTCTGAC+AGG + chr3_1:88784638-88784657 None:intergenic 40.0%
CAAAGACAAAGCGAATAGGT+AGG + chr3_1:88784725-88784744 None:intergenic 40.0%
AAGCATGAGTCTTGGAGTAA+GGG + chr3_1:88784806-88784825 None:intergenic 40.0%
CTCATGCTTCATTTGAAAGC+TGG - chr3_1:88784817-88784836 Msa0385310:five_prime_UTR 40.0%
! TATGGTAATAATGGAGGGGC+GGG + chr3_1:88781072-88781091 None:intergenic 45.0%
ATGGAAAGAGAGGGAAATGC+GGG + chr3_1:88781101-88781120 None:intergenic 45.0%
TATCTGTCCCTCTCTTCGAT+TGG - chr3_1:88781130-88781149 Msa0385310:three_prime_UTR 45.0%
AGAGAGATCTTGCACGTTCA+AGG - chr3_1:88781260-88781279 Msa0385310:three_prime_UTR 45.0%
GCATATCACCTCCCAGAATT+TGG + chr3_1:88781312-88781331 None:intergenic 45.0%
GAGGTGATATGCGATGAACA+CGG - chr3_1:88781320-88781339 Msa0385310:three_prime_UTR 45.0%
ACAATGAAGCTTCTGGTGGT+AGG - chr3_1:88781414-88781433 Msa0385310:three_prime_UTR 45.0%
GTTCTTATGGATCTTGAGCC+TGG - chr3_1:88781452-88781471 Msa0385310:three_prime_UTR 45.0%
CTGATACTTTCCATGGTACC+AGG + chr3_1:88781473-88781492 None:intergenic 45.0%
GCTGGTAATAATTGGGCCAA+AGG - chr3_1:88781551-88781570 Msa0385310:CDS 45.0%
GCCAAAGGTCATTATACCGA+AGG - chr3_1:88781566-88781585 Msa0385310:CDS 45.0%
GTCAATCAACTCAGCACCTT+CGG + chr3_1:88781585-88781604 None:intergenic 45.0%
! ATGATTGAAAGGCATGCAGG+AGG - chr3_1:88782142-88782161 Msa0385310:intron 45.0%
! TGATTGAAAGGCATGCAGGA+GGG - chr3_1:88782143-88782162 Msa0385310:intron 45.0%
AGGCCCTATATACTCCATGT+CGG + chr3_1:88782260-88782279 None:intergenic 45.0%
CTGTCGGTGGTTGTAATCAT+AGG + chr3_1:88782665-88782684 None:intergenic 45.0%
AAATAATACCGGTCTGTCGG+TGG + chr3_1:88782678-88782697 None:intergenic 45.0%
GTTACACAGAGCTATGGTCA+AGG - chr3_1:88782992-88783011 Msa0385310:intron 45.0%
GAAGAGAGAAGAGAGAGAAG+AGG - chr3_1:88783095-88783114 Msa0385310:intron 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG - chr3_1:88783139-88783158 Msa0385310:intron 45.0%
! TGGACCTGGACCAAGAATTT+TGG + chr3_1:88783190-88783209 None:intergenic 45.0%
!! TTTCAAGTTTGCCACTCCCT+TGG - chr3_1:88783406-88783425 Msa0385310:intron 45.0%
! CTCTGTTTTCCCATCTCCAA+AGG - chr3_1:88783510-88783529 Msa0385310:intron 45.0%
! GTGTCAGATACCTTTGGAGA+TGG + chr3_1:88783523-88783542 None:intergenic 45.0%
TACACTATCTGTCCACCAAC+TGG - chr3_1:88783564-88783583 Msa0385310:intron 45.0%
! CTGCATTTTCTACCAGTTGG+TGG + chr3_1:88783579-88783598 None:intergenic 45.0%
GAGGTGATACTTACAGCTAG+GGG + chr3_1:88783668-88783687 None:intergenic 45.0%
GATTTCTGCAACTATGAGCG+GGG - chr3_1:88783787-88783806 Msa0385310:intron 45.0%
! ACATGTTGTCTGAGGTTTCC+TGG - chr3_1:88783812-88783831 Msa0385310:intron 45.0%
GTATGTATCCCTTACTGTCC+CGG - chr3_1:88783943-88783962 Msa0385310:intron 45.0%
! CGGAACTGACTCAACAAATG+TGG - chr3_1:88783963-88783982 Msa0385310:intron 45.0%
ACTGCATCTGCAATGTTCAG+AGG - chr3_1:88784037-88784056 Msa0385310:intron 45.0%
AGGAAAGATGAGCACCAAAG+AGG - chr3_1:88784057-88784076 Msa0385310:intron 45.0%
AATGCAAAAAGGCTTTGCGC+CGG + chr3_1:88784273-88784292 None:intergenic 45.0%
! TTTGCATTGGTATACTGGGG+AGG - chr3_1:88784285-88784304 Msa0385310:CDS 45.0%
! TTGCATTGGTATACTGGGGA+GGG - chr3_1:88784286-88784305 Msa0385310:CDS 45.0%
! AGCAGAGTACCAACAATACC+AGG - chr3_1:88784360-88784379 Msa0385310:CDS 45.0%
ATACCAGGATGCAATAGCTG+AGG - chr3_1:88784375-88784394 Msa0385310:CDS 45.0%
ACATTATGAGGAGCAGTAGC+TGG - chr3_1:88784429-88784448 Msa0385310:CDS 45.0%
GTAGCTGGATCAAACTATCG+GGG - chr3_1:88784444-88784463 Msa0385310:CDS 45.0%
TCTTGGAGTAAGGGACTTGA+TGG + chr3_1:88784797-88784816 None:intergenic 45.0%
GAAGCATGAGTCTTGGAGTA+AGG + chr3_1:88784807-88784826 None:intergenic 45.0%
GAAATAGTGTGCATGCCGTT+TGG - chr3_1:88784855-88784874 Msa0385310:five_prime_UTR 45.0%
GGGAAATGCGGGGGTTAATA+TGG + chr3_1:88781090-88781109 None:intergenic 50.0%
TGGAAAGAGAGGGAAATGCG+GGG + chr3_1:88781100-88781119 None:intergenic 50.0%
AGCGGTTCCAATCGAAGAGA+GGG + chr3_1:88781140-88781159 None:intergenic 50.0%
GAGATCTTGCACGTTCAAGG+TGG - chr3_1:88781263-88781282 Msa0385310:three_prime_UTR 50.0%
GGCCAATGCGGTAACCAAAT+TGG - chr3_1:88781284-88781303 Msa0385310:three_prime_UTR 50.0%
!! GAACACGGCATTGATCCAAC+TGG - chr3_1:88781335-88781354 Msa0385310:three_prime_UTR 50.0%
GTGTTTGGACAATCTGGTGC+TGG - chr3_1:88781533-88781552 Msa0385310:CDS 50.0%
GATTACAACCACCGACAGAC+CGG - chr3_1:88782667-88782686 Msa0385310:intron 50.0%
GAGAAACACTTGTGTGGACC+TGG + chr3_1:88783204-88783223 None:intergenic 50.0%
GAACTCTGATCTCAGGAAGC+TGG - chr3_1:88783841-88783860 Msa0385310:intron 50.0%
TTTGCACCTCTCACTTCTCG+TGG - chr3_1:88783911-88783930 Msa0385310:intron 50.0%
TTGCACCTCTCACTTCTCGT+GGG - chr3_1:88783912-88783931 Msa0385310:intron 50.0%
AGTCAGTTCCGGGACAGTAA+GGG + chr3_1:88783954-88783973 None:intergenic 50.0%
!! AGTCAAGTATCGGCCATGTC+GGG + chr3_1:88784020-88784039 None:intergenic 50.0%
!! CAGTCAAGTATCGGCCATGT+CGG + chr3_1:88784021-88784040 None:intergenic 50.0%
! GGCGCAAAGCCTTTTTGCAT+TGG - chr3_1:88784272-88784291 Msa0385310:CDS 50.0%
TTGGTATACTGGGGAGGGAA+TGG - chr3_1:88784291-88784310 Msa0385310:CDS 50.0%
CTATCGGGGTAATGCCCTAA+TGG - chr3_1:88784458-88784477 Msa0385310:CDS 50.0%
TGAATGCGTCCTGTCAGACA+GGG - chr3_1:88784626-88784645 Msa0385310:CDS 50.0%
! GTAATAATGGAGGGGCGGGA+GGG + chr3_1:88781068-88781087 None:intergenic 55.0%
GGAAAGAGAGGGAAATGCGG+GGG + chr3_1:88781099-88781118 None:intergenic 55.0%
GAGCGGTTCCAATCGAAGAG+AGG + chr3_1:88781141-88781160 None:intergenic 55.0%
CACGTTCAAGGTGGCCAATG+CGG - chr3_1:88781272-88781291 Msa0385310:three_prime_UTR 55.0%
GGATCTTGAGCCTGGTACCA+TGG - chr3_1:88781460-88781479 Msa0385310:exon 55.0%
CAAGTTTGCCACTCCCTTGG+AGG - chr3_1:88783409-88783428 Msa0385310:intron 55.0%
GCGGGGTTACATGTTGTCTG+AGG - chr3_1:88783804-88783823 Msa0385310:intron 55.0%
TGAGACCCACGAGAAGTGAG+AGG + chr3_1:88783920-88783939 None:intergenic 55.0%
GAGTCAGTTCCGGGACAGTA+AGG + chr3_1:88783955-88783974 None:intergenic 55.0%
!! GTCAAGTATCGGCCATGTCG+GGG + chr3_1:88784019-88784038 None:intergenic 55.0%
TGGGGAGGGAATGGATGAGA+TGG - chr3_1:88784300-88784319 Msa0385310:CDS 55.0%
GGATGAGATGGAGTTCACGG+AGG - chr3_1:88784312-88784331 Msa0385310:CDS 55.0%
CCTCCTCAGCTATTGCATCC+TGG + chr3_1:88784381-88784400 None:intergenic 55.0%
CCAGGATGCAATAGCTGAGG+AGG - chr3_1:88784378-88784397 Msa0385310:CDS 55.0%
CTGAATGCGTCCTGTCAGAC+AGG - chr3_1:88784625-88784644 Msa0385310:CDS 55.0%
! GGTAATAATGGAGGGGCGGG+AGG + chr3_1:88781069-88781088 None:intergenic 60.0%
GTTTGCCACTCCCTTGGAGG+AGG - chr3_1:88783412-88783431 Msa0385310:intron 60.0%
AGAACCCGTGCCTCCTCCAA+GGG + chr3_1:88783425-88783444 None:intergenic 60.0%
! TGTGCTGCTGATCCCCGACA+TGG - chr3_1:88784004-88784023 Msa0385310:intron 60.0%
CCACTCCCTTGGAGGAGGCA+CGG - chr3_1:88783417-88783436 Msa0385310:intron 65.0%
! CACTCCCTTGGAGGAGGCAC+GGG - chr3_1:88783418-88783437 Msa0385310:intron 65.0%
CAGAACCCGTGCCTCCTCCA+AGG + chr3_1:88783426-88783445 None:intergenic 65.0%
! CTTGGAGGAGGCACGGGTTC+TGG - chr3_1:88783424-88783443 Msa0385310:intron 65.0%
! AGGAGGCACGGGTTCTGGCA+TGG - chr3_1:88783429-88783448 Msa0385310:intron 65.0%
! GGAGGCACGGGTTCTGGCAT+GGG - chr3_1:88783430-88783449 Msa0385310:intron 65.0%
CCGTGCCTCCTCCAAGGGAG+TGG + chr3_1:88783420-88783439 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 88781009 88784916 88781009 ID=Msa0385310;Name=Msa0385310
chr3_1 mRNA 88781009 88784916 88781009 ID=Msa0385310-mRNA-1;Parent=Msa0385310;Name=Msa0385310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=248|1|1|1|1|1|3|469|449
chr3_1 exon 88781009 88782157 88781009 ID=Msa0385310-mRNA-1:exon:23986;Parent=Msa0385310-mRNA-1
chr3_1 exon 88782252 88782521 88782252 ID=Msa0385310-mRNA-1:exon:23985;Parent=Msa0385310-mRNA-1
chr3_1 exon 88784269 88784916 88784269 ID=Msa0385310-mRNA-1:exon:23984;Parent=Msa0385310-mRNA-1
chr3_1 five_prime_UTR 88784669 88784916 88784669 ID=Msa0385310-mRNA-1:five_prime_utr;Parent=Msa0385310-mRNA-1
chr3_1 CDS 88784269 88784668 88784269 ID=Msa0385310-mRNA-1:cds;Parent=Msa0385310-mRNA-1
chr3_1 CDS 88782252 88782521 88782252 ID=Msa0385310-mRNA-1:cds;Parent=Msa0385310-mRNA-1
chr3_1 CDS 88781478 88782157 88781478 ID=Msa0385310-mRNA-1:cds;Parent=Msa0385310-mRNA-1
chr3_1 three_prime_UTR 88781009 88781477 88781009 ID=Msa0385310-mRNA-1:three_prime_utr;Parent=Msa0385310-mRNA-1
Gene Sequence

>Msa0385310

ATGAGAGAGATCTTGCACGTTCAAGGTGGCCAATGCGGTAACCAAATTGGATCCAAATTCTGGGAGGTGATATGCGATGAACACGGCATTGATCCAACTGGAAAATATGTAAGCGAAGGTGGAAATGATACTCAATTGGAAAGGATCAATGTGTATTACAATGAAGCTTCTGGTGGTAGGTATGTTCCTAGAGCAGTTCTTATGGATCTTGAGCCTGGTACCATGGAAAGTATCAGATCTGGTCCTTTTGGTAAGATCTTTCGTCCTGATAATTTCGTGTTTGGACAATCTGGTGCTGGTAATAATTGGGCCAAAGGTCATTATACCGAAGGTGCTGAGTTGATTGACTCTGTTCTTGATGTTGTTCGTAAAGAAGCAGAGAATTGTGATTGCTTGCAAGGTTTTCAAGTTTGCCACTCCCTTGGAGGAGGCACGGGTTCTGGCATGGGAACTCTATTGATATCAAAGATTAGGGAGGAATATCCAGACAGAATGATGCTTACTTTCTCTGTTTTCCCATCTCCAAAGGTATCTGACACAGTTGTTGAGCCATATAATGCTACACTATCTGTCCACCAACTGGTAGAAAATGCAGATGAGTGTATGGTTCTTGACAATGAAGCACTTTATGACATTTGCTTCAGGACATTAAAACTCAGCACCCCTAGCTTTGGGGATCTGAACCATCTGATTTCTGCAACTATGAGCGGGGTTACATGTTGTCTGAGGTTTCCTGGTCAATTGAACTCTGATCTCAGGAAGCTGGCTGTCAATCTGATCCCATTCCCTCGTCTTCACTTTTTTATGGTTGGATTTGCACCTCTCACTTCTCGTGGGTCTCAGCAGTATGTATCCCTTACTGTCCCGGAACTGACTCAACAAATGTGGGACGCCAAGAATATGATGTGTGCTGCTGATCCCCGACATGGCCGATACTTGACTGCATCTGCAATGTTCAGAGGAAAGATGAGCACCAAAGAGGTTGATGAACAAATCATCAATGTGCAGAACAAGAATTCTTCATACTTTGTTGAATGGATTCCCAACAATGTGAAGTCTAGTGTGTGCGATATCCCACCCAAGAATTTGAAGATGTCGTCCACTTTTATTGGGAACTCAACTTCAATTCAGGAGATGTTTAGGAGGGTCAGTGAGCAGTTTACTGCAATGTTCCGGCGCAAAGCCTTTTTGCATTGGTATACTGGGGAGGGAATGGATGAGATGGAGTTCACGGAGGCAGAGAGTAACATGAATGATTTGGTAGCAGAGTACCAACAATACCAGGATGCAATAGCTGAGGAGGAAGATGATTATGAAGAAGAAGGTGAGGAACATTATGAGGAGCAGTAG
Protein sequence

>Msa0385310

MREILHVQGGQCGNQIGSKFWEVICDEHGIDPTGKYVSEGGNDTQLERINVYYNEASGGRYVPRAVLMDLEPGTMESIRSGPFGKIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQIINVQNKNSSYFVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAIAEEEDDYEEEGEEHYEEQ*