Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059510 | KEH40385.1 | 79.422 | 277 | 47 | 4 | 1 | 275 | 1 | 269 | 3.09e-148 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059510 | A0A072VQK0 | 79.422 | 277 | 47 | 4 | 1 | 275 | 1 | 269 | 1.48e-148 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009610 | Msa0059510 | 0.811622 | 6.385173e-51 | -8.615850e-47 |
| Msa0020330 | Msa0059510 | 0.813514 | 2.462800e-51 | -8.615850e-47 |
| Msa0024160 | Msa0059510 | 0.857313 | 1.777535e-62 | -8.615850e-47 |
| Msa0059510 | Msa0059530 | 0.886445 | 3.398937e-72 | -8.615850e-47 |
| Msa0059510 | Msa0254190 | 0.815463 | 9.125634e-52 | -8.615850e-47 |
| Msa0059510 | Msa0329550 | 0.810379 | 1.187184e-50 | -8.615850e-47 |
| Msa0059510 | Msa0389050 | 0.826047 | 3.361855e-54 | -8.615850e-47 |
| Msa0059510 | Msa0499710 | 0.811745 | 6.002218e-51 | -8.615850e-47 |
| Msa0059510 | Msa0678240 | 0.801888 | 7.279725e-49 | -8.615850e-47 |
| Msa0059510 | Msa0733400 | 0.838335 | 3.057640e-57 | -8.615850e-47 |
| Msa0059510 | Msa0752580 | 0.818479 | 1.918926e-52 | -8.615850e-47 |
| Msa0059510 | Msa0754500 | 0.811697 | 6.149238e-51 | -8.615850e-47 |
| Msa0059510 | Msa0811940 | 0.829981 | 3.797986e-55 | -8.615850e-47 |
| Msa0059510 | Msa0830900 | 0.819964 | 8.805974e-53 | -8.615850e-47 |
| Msa0059510 | Msa0883450 | 0.800192 | 1.617004e-48 | -8.615850e-47 |
| Msa0059510 | Msa1135660 | 0.824843 | 6.479464e-54 | -8.615850e-47 |
| Msa0059510 | Msa1182780 | 0.817671 | 2.922052e-52 | -8.615850e-47 |
| Msa0059510 | Msa1232130 | 0.835865 | 1.307955e-56 | -8.615850e-47 |
| Msa0059510 | Msa1279860 | 0.839867 | 1.225559e-57 | -8.615850e-47 |
| Msa0059510 | Msa1279870 | 0.817290 | 3.559816e-52 | -8.615850e-47 |
| Msa0059510 | Msa1287690 | 0.802806 | 4.710898e-49 | -8.615850e-47 |
| Msa0059510 | Msa1287700 | 0.801234 | 9.913018e-49 | -8.615850e-47 |
| Msa0059510 | Msa1459170 | 0.806267 | 8.937181e-50 | -8.615850e-47 |
| Msa0059510 | Msa1464100 | 0.862740 | 4.090066e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059510 | MtrunA17_Chr1g0158661 | 76.596 | 282 | 56 | 4 | 1 | 280 | 1 | 274 | 3.13e-146 | 426 |
| Msa0059510 | MtrunA17_Chr1g0158631 | 79.401 | 267 | 51 | 3 | 1 | 264 | 1 | 266 | 1.05e-143 | 420 |
| Msa0059510 | MtrunA17_Chr1g0157791 | 41.071 | 280 | 117 | 11 | 13 | 265 | 3 | 261 | 2.94e-46 | 165 |
| Msa0059510 | MtrunA17_Chr3g0088331 | 42.149 | 242 | 108 | 11 | 37 | 266 | 44 | 265 | 6.60e-46 | 155 |
| Msa0059510 | MtrunA17_Chr1g0158061 | 41.564 | 243 | 109 | 8 | 37 | 263 | 33 | 258 | 1.53e-45 | 155 |
| Msa0059510 | MtrunA17_Chr1g0157881 | 38.235 | 272 | 121 | 12 | 37 | 263 | 58 | 327 | 4.46e-45 | 162 |
| Msa0059510 | MtrunA17_Chr1g0157911 | 42.276 | 246 | 115 | 10 | 33 | 263 | 35 | 268 | 5.80e-43 | 155 |
| Msa0059510 | MtrunA17_Chr1g0158411 | 38.545 | 275 | 124 | 10 | 16 | 267 | 23 | 275 | 9.57e-43 | 155 |
| Msa0059510 | MtrunA17_Chr1g0157961 | 43.694 | 222 | 100 | 6 | 37 | 248 | 41 | 247 | 1.51e-42 | 147 |
| Msa0059510 | MtrunA17_Chr1g0158151 | 40.856 | 257 | 121 | 9 | 37 | 277 | 34 | 275 | 3.91e-42 | 153 |
| Msa0059510 | MtrunA17_Chr1g0158041 | 43.231 | 229 | 108 | 6 | 30 | 247 | 26 | 243 | 9.16e-42 | 152 |
| Msa0059510 | MtrunA17_Chr1g0157861 | 37.226 | 274 | 111 | 10 | 37 | 263 | 43 | 302 | 3.13e-41 | 151 |
| Msa0059510 | MtrunA17_Chr1g0158731 | 37.597 | 258 | 121 | 7 | 16 | 255 | 11 | 246 | 5.49e-41 | 143 |
| Msa0059510 | MtrunA17_Chr1g0158191 | 40.244 | 246 | 115 | 9 | 16 | 242 | 4 | 236 | 6.39e-41 | 150 |
| Msa0059510 | MtrunA17_Chr1g0157991 | 44.796 | 221 | 103 | 7 | 37 | 248 | 36 | 246 | 1.30e-40 | 149 |
| Msa0059510 | MtrunA17_Chr6g0467711 | 37.594 | 266 | 126 | 12 | 23 | 266 | 22 | 269 | 1.57e-39 | 146 |
| Msa0059510 | MtrunA17_Chr1g0158761 | 37.131 | 237 | 115 | 6 | 16 | 247 | 9 | 216 | 1.05e-38 | 143 |
| Msa0059510 | MtrunA17_Chr1g0158461 | 32.323 | 297 | 143 | 8 | 13 | 268 | 19 | 298 | 2.41e-36 | 131 |
| Msa0059510 | MtrunA17_Chr1g0158331 | 35.769 | 260 | 131 | 9 | 37 | 274 | 51 | 296 | 4.19e-36 | 131 |
| Msa0059510 | MtrunA17_Chr1g0158571 | 64.948 | 97 | 32 | 2 | 171 | 267 | 2 | 96 | 3.95e-32 | 124 |
| Msa0059510 | MtrunA17_Chr1g0158121 | 65.854 | 82 | 28 | 0 | 37 | 118 | 37 | 118 | 3.41e-31 | 113 |
| Msa0059510 | MtrunA17_Chr1g0158541 | 31.159 | 276 | 140 | 11 | 16 | 263 | 17 | 270 | 8.66e-28 | 112 |
| Msa0059510 | MtrunA17_Chr1g0158301 | 31.852 | 270 | 142 | 13 | 16 | 263 | 19 | 268 | 8.37e-27 | 109 |
| Msa0059510 | MtrunA17_Chr1g0160761 | 31.174 | 247 | 147 | 8 | 17 | 253 | 7 | 240 | 1.80e-23 | 99.8 |
| Msa0059510 | MtrunA17_Chr1g0160701 | 32.889 | 225 | 121 | 8 | 34 | 247 | 43 | 248 | 2.71e-23 | 99.4 |
| Msa0059510 | MtrunA17_Chr1g0160561 | 33.047 | 233 | 122 | 9 | 31 | 247 | 29 | 243 | 1.03e-21 | 94.7 |
| Msa0059510 | MtrunA17_Chr1g0160661 | 30.496 | 282 | 152 | 11 | 1 | 269 | 21 | 271 | 3.18e-21 | 92.8 |
| Msa0059510 | MtrunA17_Chr1g0160721 | 31.203 | 266 | 136 | 12 | 16 | 265 | 18 | 252 | 3.76e-20 | 90.1 |
| Msa0059510 | MtrunA17_Chr1g0160711 | 28.571 | 245 | 149 | 6 | 31 | 266 | 22 | 249 | 5.50e-19 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCACAACTCTTGCATATC+TGG | 0.189605 | 1_2:+16366587 | None:intergenic |
| CAATTGTTGGGTTGAATGTT+TGG | 0.270020 | 1_2:+16366327 | None:intergenic |
| TTGTTACTCTCACATCCTTC+TGG | 0.271931 | 1_2:-16366008 | Msa0059510:CDS |
| GCTATGGATTTGAAATTTCC+TGG | 0.305840 | 1_2:-16365327 | Msa0059510:CDS |
| GTACAGTTCATGTAAATTAC+AGG | 0.315563 | 1_2:+16366159 | None:intergenic |
| CCTATGGAATTGATTTATCT+AGG | 0.325069 | 1_2:-16366182 | Msa0059510:CDS |
| TACTACCACGATAACATTAT+AGG | 0.326386 | 1_2:-16365973 | Msa0059510:intron |
| ATGGTTTCAACCTCTAACTT+TGG | 0.331944 | 1_2:-16366618 | Msa0059510:CDS |
| ACAACATATATGTAATTGTT+GGG | 0.350079 | 1_2:-16366074 | Msa0059510:CDS |
| GGACCCACAACTTGGAATAT+TGG | 0.351925 | 1_2:-16366052 | Msa0059510:CDS |
| AGGGAGAGAGGAGCAATTGT+TGG | 0.363569 | 1_2:+16366314 | None:intergenic |
| GAAATGTTAACCAGTGCCTT+TGG | 0.363736 | 1_2:-16365187 | Msa0059510:three_prime_UTR |
| TGTTACTCTCACATCCTTCT+GGG | 0.367632 | 1_2:-16366007 | Msa0059510:CDS |
| CGCTGTGGATAAGTATTATA+CGG | 0.380961 | 1_2:-16366121 | Msa0059510:CDS |
| GTACTGTTACCACAGTGGTC+TGG | 0.396707 | 1_2:+16366456 | None:intergenic |
| TCTGAATGGATTAGTTATGT+TGG | 0.397719 | 1_2:+16366491 | None:intergenic |
| AATTGTTGGGTTGAATGTTT+GGG | 0.419800 | 1_2:+16366328 | None:intergenic |
| AAATGTTAACCAGTGCCTTT+GGG | 0.430625 | 1_2:-16365186 | Msa0059510:three_prime_UTR |
| TAAGAAGAAGTGAGGGAGAG+AGG | 0.444522 | 1_2:+16366302 | None:intergenic |
| CACAACATATATGTAATTGT+TGG | 0.460897 | 1_2:-16366075 | Msa0059510:CDS |
| TACTGTTACCACAGTGGTCT+GGG | 0.470002 | 1_2:+16366457 | None:intergenic |
| ACAGTATTGAATTTGTATGA+TGG | 0.477569 | 1_2:-16366405 | Msa0059510:CDS |
| GGGAGAGAGGAGCAATTGTT+GGG | 0.477982 | 1_2:+16366315 | None:intergenic |
| GGCTCCAATATTCCAAGTTG+TGG | 0.482055 | 1_2:+16366048 | None:intergenic |
| CAGGAAGAAGAACAAGTTTG+TGG | 0.492234 | 1_2:+16366525 | None:intergenic |
| ATTCAGAAGGCACTAGGCTA+TGG | 0.492318 | 1_2:-16365343 | Msa0059510:CDS |
| TACTTATCCACAGCGTTACT+AGG | 0.493264 | 1_2:+16366129 | None:intergenic |
| ATCACAACTCTTGCATATCT+GGG | 0.496177 | 1_2:+16366588 | None:intergenic |
| TAGCGGTATAAGAAGAAGTG+AGG | 0.496400 | 1_2:+16366294 | None:intergenic |
| TACGGATACCACTTCATGCA+TGG | 0.498719 | 1_2:-16366103 | Msa0059510:CDS |
| GCAATGATCACAATGACAAA+AGG | 0.499670 | 1_2:+16365297 | None:intergenic |
| ATTGTTGGGGACCCACAACT+TGG | 0.505521 | 1_2:-16366060 | Msa0059510:CDS |
| ATGACAAAAGGCTTGCATCC+AGG | 0.510377 | 1_2:+16365309 | None:intergenic |
| AACAAAGGACTAAGGTCTTA+CGG | 0.516938 | 1_2:+16365227 | None:intergenic |
| CAAACTTGTTCTTCTTCCTG+TGG | 0.522063 | 1_2:-16366522 | Msa0059510:CDS |
| TGCCCCTGTCCCAAAGGCAC+TGG | 0.530737 | 1_2:+16365177 | None:intergenic |
| TGCTACCTCAAGGACCCTAC+TGG | 0.532171 | 1_2:-16365277 | Msa0059510:CDS |
| GAAAATGTAACAAAGGACTA+AGG | 0.532231 | 1_2:+16365219 | None:intergenic |
| AGGTCTTACGGTAGTCGTCT+CGG | 0.533670 | 1_2:+16365239 | None:intergenic |
| AACTAGTGCCCCTGTCCCAA+AGG | 0.549616 | 1_2:+16365171 | None:intergenic |
| GCTCCAATATTCCAAGTTGT+GGG | 0.553848 | 1_2:+16366049 | None:intergenic |
| AGCGGTATAAGAAGAAGTGA+GGG | 0.555492 | 1_2:+16366295 | None:intergenic |
| AACACTGAATCTCGCCAGTA+GGG | 0.556443 | 1_2:+16365263 | None:intergenic |
| CCTAGATAAATCAATTCCAT+AGG | 0.568001 | 1_2:+16366182 | None:intergenic |
| TAACACTGAATCTCGCCAGT+AGG | 0.589206 | 1_2:+16365262 | None:intergenic |
| ACGGATACCACTTCATGCAT+GGG | 0.598626 | 1_2:-16366102 | Msa0059510:CDS |
| TTGTGATCATTGCTACCTCA+AGG | 0.600528 | 1_2:-16365287 | Msa0059510:CDS |
| GTTACTCTCACATCCTTCTG+GGG | 0.604732 | 1_2:-16366006 | Msa0059510:CDS |
| CGTGGAAGATAAATCAGACG+TGG | 0.607186 | 1_2:+16366215 | None:intergenic |
| TCTCGCCAGTAGGGTCCTTG+AGG | 0.613174 | 1_2:+16365272 | None:intergenic |
| ATCATACATCGATATTCAGA+AGG | 0.615231 | 1_2:-16365356 | Msa0059510:CDS |
| TGGTAACAGTACGTACGAGT+TGG | 0.621121 | 1_2:-16366445 | Msa0059510:CDS |
| ACGCAATGAAAATGTAACAA+AGG | 0.624817 | 1_2:+16365212 | None:intergenic |
| ATCGATATTCAGAAGGCACT+AGG | 0.625875 | 1_2:-16365349 | Msa0059510:CDS |
| CAACATATATGTAATTGTTG+GGG | 0.630534 | 1_2:-16366073 | Msa0059510:CDS |
| TTGTACCTATAATGTTATCG+TGG | 0.635997 | 1_2:+16365968 | None:intergenic |
| GTAAGTATATGCTCCCCAGA+AGG | 0.638335 | 1_2:+16365993 | None:intergenic |
| GTGTTGACCCATGCATGAAG+TGG | 0.648799 | 1_2:+16366095 | None:intergenic |
| TTATCCACAGCGTTACTAGG+TGG | 0.678496 | 1_2:+16366132 | None:intergenic |
| ACAAGCTTAACACGGCATTG+AGG | 0.681882 | 1_2:+16366027 | None:intergenic |
| TCCATAGGAAAATACAAACG+TGG | 0.689921 | 1_2:+16366197 | None:intergenic |
| AAGTCCACCTAGTAACGCTG+TGG | 0.692399 | 1_2:-16366136 | Msa0059510:CDS |
| TGAGAGTAACAAGCTTAACA+CGG | 0.706562 | 1_2:+16366019 | None:intergenic |
| CGTACGTACTGTTACCACAG+TGG | 0.756220 | 1_2:+16366451 | None:intergenic |
| AAACATGACCCAGACCACTG+TGG | 0.761857 | 1_2:-16366465 | Msa0059510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAATTTGTTTTTTTTTCA+TGG | + | chr1_2:16366080-16366099 | None:intergenic | 15.0% |
| !!! | TTCAATTTGTTTTTTTTTCA+TGG | + | chr1_2:16366080-16366099 | None:intergenic | 15.0% |
| !!! | GTATGAATTAGTATCTTTTT+GGG | + | chr1_2:16365543-16365562 | None:intergenic | 20.0% |
| !! | ACAACATATATGTAATTGTT+GGG | - | chr1_2:16365729-16365748 | Msa0059510:intron | 20.0% |
| !! | TCTATTCAAGTGTAAATAAA+TGG | + | chr1_2:16366252-16366271 | None:intergenic | 20.0% |
| !! | TTTATTTACACTTGAATAGA+AGG | - | chr1_2:16366252-16366271 | Msa0059510:CDS | 20.0% |
| !! | TATAGACAAAAAAATCTACA+CGG | + | chr1_2:16366401-16366420 | None:intergenic | 20.0% |
| !!! | GTATGAATTAGTATCTTTTT+GGG | + | chr1_2:16365543-16365562 | None:intergenic | 20.0% |
| !! | ACAACATATATGTAATTGTT+GGG | - | chr1_2:16365729-16365748 | Msa0059510:intron | 20.0% |
| !! | TCTATTCAAGTGTAAATAAA+TGG | + | chr1_2:16366252-16366271 | None:intergenic | 20.0% |
| !! | TTTATTTACACTTGAATAGA+AGG | - | chr1_2:16366252-16366271 | Msa0059510:CDS | 20.0% |
| !! | TATAGACAAAAAAATCTACA+CGG | + | chr1_2:16366401-16366420 | None:intergenic | 20.0% |
| !! | ACAGTATTGAATTTGTATGA+TGG | - | chr1_2:16365398-16365417 | Msa0059510:intron | 25.0% |
| !! | CGTATGAATTAGTATCTTTT+TGG | + | chr1_2:16365544-16365563 | None:intergenic | 25.0% |
| ! | CACAACATATATGTAATTGT+TGG | - | chr1_2:16365728-16365747 | Msa0059510:intron | 25.0% |
| ! | CAACATATATGTAATTGTTG+GGG | - | chr1_2:16365730-16365749 | Msa0059510:intron | 25.0% |
| ! | ATATAGTCAAATTGAGTCAT+TGG | + | chr1_2:16365886-16365905 | None:intergenic | 25.0% |
| ! | TTTGACTATATCACTATTGA+TGG | - | chr1_2:16365895-16365914 | Msa0059510:intron | 25.0% |
| !!! | ATTGATTTTGTCATCCAAAA+AGG | + | chr1_2:16366306-16366325 | None:intergenic | 25.0% |
| !! | ACAGTATTGAATTTGTATGA+TGG | - | chr1_2:16365398-16365417 | Msa0059510:intron | 25.0% |
| !! | CGTATGAATTAGTATCTTTT+TGG | + | chr1_2:16365544-16365563 | None:intergenic | 25.0% |
| ! | CACAACATATATGTAATTGT+TGG | - | chr1_2:16365728-16365747 | Msa0059510:intron | 25.0% |
| ! | CAACATATATGTAATTGTTG+GGG | - | chr1_2:16365730-16365749 | Msa0059510:intron | 25.0% |
| ! | ATATAGTCAAATTGAGTCAT+TGG | + | chr1_2:16365886-16365905 | None:intergenic | 25.0% |
| ! | TTTGACTATATCACTATTGA+TGG | - | chr1_2:16365895-16365914 | Msa0059510:intron | 25.0% |
| !!! | ATTGATTTTGTCATCCAAAA+AGG | + | chr1_2:16366306-16366325 | None:intergenic | 25.0% |
| ! | TATGTTGGAAATTTTTCCAC+AGG | + | chr1_2:16365300-16365319 | None:intergenic | 30.0% |
| !! | TCTGAATGGATTAGTTATGT+TGG | + | chr1_2:16365315-16365334 | None:intergenic | 30.0% |
| !! | AATTGTTGGGTTGAATGTTT+GGG | + | chr1_2:16365478-16365497 | None:intergenic | 30.0% |
| !!! | CTTTTTGGGTAAAATTGTAG+CGG | + | chr1_2:16365529-16365548 | None:intergenic | 30.0% |
| CCTAGATAAATCAATTCCAT+AGG | + | chr1_2:16365624-16365643 | None:intergenic | 30.0% | |
| ! | CCTATGGAATTGATTTATCT+AGG | - | chr1_2:16365621-16365640 | Msa0059510:intron | 30.0% |
| GTACAGTTCATGTAAATTAC+AGG | + | chr1_2:16365647-16365666 | None:intergenic | 30.0% | |
| TACTACCACGATAACATTAT+AGG | - | chr1_2:16365830-16365849 | Msa0059510:intron | 30.0% | |
| TTGTACCTATAATGTTATCG+TGG | + | chr1_2:16365838-16365857 | None:intergenic | 30.0% | |
| ! | GAGTCATTGGTTATAAAAGA+AGG | + | chr1_2:16365873-16365892 | None:intergenic | 30.0% |
| ATCATACATCGATATTCAGA+AGG | - | chr1_2:16366447-16366466 | Msa0059510:CDS | 30.0% | |
| GAAAATGTAACAAAGGACTA+AGG | + | chr1_2:16366587-16366606 | None:intergenic | 30.0% | |
| ACGCAATGAAAATGTAACAA+AGG | + | chr1_2:16366594-16366613 | None:intergenic | 30.0% | |
| ! | TATGTTGGAAATTTTTCCAC+AGG | + | chr1_2:16365300-16365319 | None:intergenic | 30.0% |
| !! | TCTGAATGGATTAGTTATGT+TGG | + | chr1_2:16365315-16365334 | None:intergenic | 30.0% |
| !! | AATTGTTGGGTTGAATGTTT+GGG | + | chr1_2:16365478-16365497 | None:intergenic | 30.0% |
| !!! | CTTTTTGGGTAAAATTGTAG+CGG | + | chr1_2:16365529-16365548 | None:intergenic | 30.0% |
| CCTAGATAAATCAATTCCAT+AGG | + | chr1_2:16365624-16365643 | None:intergenic | 30.0% | |
| ! | CCTATGGAATTGATTTATCT+AGG | - | chr1_2:16365621-16365640 | Msa0059510:intron | 30.0% |
| GTACAGTTCATGTAAATTAC+AGG | + | chr1_2:16365647-16365666 | None:intergenic | 30.0% | |
| TACTACCACGATAACATTAT+AGG | - | chr1_2:16365830-16365849 | Msa0059510:intron | 30.0% | |
| TTGTACCTATAATGTTATCG+TGG | + | chr1_2:16365838-16365857 | None:intergenic | 30.0% | |
| ! | GAGTCATTGGTTATAAAAGA+AGG | + | chr1_2:16365873-16365892 | None:intergenic | 30.0% |
| ATCATACATCGATATTCAGA+AGG | - | chr1_2:16366447-16366466 | Msa0059510:CDS | 30.0% | |
| GAAAATGTAACAAAGGACTA+AGG | + | chr1_2:16366587-16366606 | None:intergenic | 30.0% | |
| ACGCAATGAAAATGTAACAA+AGG | + | chr1_2:16366594-16366613 | None:intergenic | 30.0% | |
| ATGGTTTCAACCTCTAACTT+TGG | - | chr1_2:16365185-16365204 | Msa0059510:three_prime_UTR | 35.0% | |
| ATCACAACTCTTGCATATCT+GGG | + | chr1_2:16365218-16365237 | None:intergenic | 35.0% | |
| TATCACAACTCTTGCATATC+TGG | + | chr1_2:16365219-16365238 | None:intergenic | 35.0% | |
| !! | GTTTGTGGATAAGTTTTGTG+TGG | + | chr1_2:16365266-16365285 | None:intergenic | 35.0% |
| !!! | GGGTCATGTTTTAATCTGAA+TGG | + | chr1_2:16365329-16365348 | None:intergenic | 35.0% |
| !! | CAATTGTTGGGTTGAATGTT+TGG | + | chr1_2:16365479-16365498 | None:intergenic | 35.0% |
| ! | TCCACGTTTGTATTTTCCTA+TGG | - | chr1_2:16365605-16365624 | Msa0059510:intron | 35.0% |
| TCCATAGGAAAATACAAACG+TGG | + | chr1_2:16365609-16365628 | None:intergenic | 35.0% | |
| CGCTGTGGATAAGTATTATA+CGG | - | chr1_2:16365682-16365701 | Msa0059510:intron | 35.0% | |
| TGAGAGTAACAAGCTTAACA+CGG | + | chr1_2:16365787-16365806 | None:intergenic | 35.0% | |
| ATTGAATATCTTACGACCGA+TGG | - | chr1_2:16366094-16366113 | Msa0059510:CDS | 35.0% | |
| TCATAGTTGTCCTATTCCAT+CGG | + | chr1_2:16366113-16366132 | None:intergenic | 35.0% | |
| GGAATAGGACAACTATGATA+TGG | - | chr1_2:16366115-16366134 | Msa0059510:CDS | 35.0% | |
| ACACTTGAATAGAAGGTAAG+CGG | - | chr1_2:16366259-16366278 | Msa0059510:CDS | 35.0% | |
| ! | GCTATGGATTTGAAATTTCC+TGG | - | chr1_2:16366476-16366495 | Msa0059510:CDS | 35.0% |
| GCAATGATCACAATGACAAA+AGG | + | chr1_2:16366509-16366528 | None:intergenic | 35.0% | |
| AACAAAGGACTAAGGTCTTA+CGG | + | chr1_2:16366579-16366598 | None:intergenic | 35.0% | |
| AAATGTTAACCAGTGCCTTT+GGG | - | chr1_2:16366617-16366636 | Msa0059510:CDS | 35.0% | |
| ATGGTTTCAACCTCTAACTT+TGG | - | chr1_2:16365185-16365204 | Msa0059510:three_prime_UTR | 35.0% | |
| ATCACAACTCTTGCATATCT+GGG | + | chr1_2:16365218-16365237 | None:intergenic | 35.0% | |
| TATCACAACTCTTGCATATC+TGG | + | chr1_2:16365219-16365238 | None:intergenic | 35.0% | |
| !! | GTTTGTGGATAAGTTTTGTG+TGG | + | chr1_2:16365266-16365285 | None:intergenic | 35.0% |
| !!! | GGGTCATGTTTTAATCTGAA+TGG | + | chr1_2:16365329-16365348 | None:intergenic | 35.0% |
| !! | CAATTGTTGGGTTGAATGTT+TGG | + | chr1_2:16365479-16365498 | None:intergenic | 35.0% |
| ! | TCCACGTTTGTATTTTCCTA+TGG | - | chr1_2:16365605-16365624 | Msa0059510:intron | 35.0% |
| TCCATAGGAAAATACAAACG+TGG | + | chr1_2:16365609-16365628 | None:intergenic | 35.0% | |
| CGCTGTGGATAAGTATTATA+CGG | - | chr1_2:16365682-16365701 | Msa0059510:intron | 35.0% | |
| TGAGAGTAACAAGCTTAACA+CGG | + | chr1_2:16365787-16365806 | None:intergenic | 35.0% | |
| ATTGAATATCTTACGACCGA+TGG | - | chr1_2:16366094-16366113 | Msa0059510:CDS | 35.0% | |
| TCATAGTTGTCCTATTCCAT+CGG | + | chr1_2:16366113-16366132 | None:intergenic | 35.0% | |
| GGAATAGGACAACTATGATA+TGG | - | chr1_2:16366115-16366134 | Msa0059510:CDS | 35.0% | |
| ACACTTGAATAGAAGGTAAG+CGG | - | chr1_2:16366259-16366278 | Msa0059510:CDS | 35.0% | |
| ! | GCTATGGATTTGAAATTTCC+TGG | - | chr1_2:16366476-16366495 | Msa0059510:CDS | 35.0% |
| GCAATGATCACAATGACAAA+AGG | + | chr1_2:16366509-16366528 | None:intergenic | 35.0% | |
| AACAAAGGACTAAGGTCTTA+CGG | + | chr1_2:16366579-16366598 | None:intergenic | 35.0% | |
| AAATGTTAACCAGTGCCTTT+GGG | - | chr1_2:16366617-16366636 | Msa0059510:CDS | 35.0% | |
| ! | GGGTTTTTCTCCAAAGTTAG+AGG | + | chr1_2:16365198-16365217 | None:intergenic | 40.0% |
| CAGGAAGAAGAACAAGTTTG+TGG | + | chr1_2:16365281-16365300 | None:intergenic | 40.0% | |
| ! | CAAACTTGTTCTTCTTCCTG+TGG | - | chr1_2:16365281-16365300 | Msa0059510:CDS | 40.0% |
| AGCGGTATAAGAAGAAGTGA+GGG | + | chr1_2:16365511-16365530 | None:intergenic | 40.0% | |
| TAGCGGTATAAGAAGAAGTG+AGG | + | chr1_2:16365512-16365531 | None:intergenic | 40.0% | |
| TACTTATCCACAGCGTTACT+AGG | + | chr1_2:16365677-16365696 | None:intergenic | 40.0% | |
| GCTCCAATATTCCAAGTTGT+GGG | + | chr1_2:16365757-16365776 | None:intergenic | 40.0% | |
| TTGTTACTCTCACATCCTTC+TGG | - | chr1_2:16365795-16365814 | Msa0059510:intron | 40.0% | |
| TGTTACTCTCACATCCTTCT+GGG | - | chr1_2:16365796-16365815 | Msa0059510:intron | 40.0% | |
| TATCTTACGACCGATGGAAT+AGG | - | chr1_2:16366100-16366119 | Msa0059510:CDS | 40.0% | |
| ! | ACTGTACCACTAGACCTTTT+TGG | - | chr1_2:16366289-16366308 | Msa0059510:CDS | 40.0% |
| TGTCATCCAAAAAGGTCTAG+TGG | + | chr1_2:16366298-16366317 | None:intergenic | 40.0% | |
| !! | ATCGATATTCAGAAGGCACT+AGG | - | chr1_2:16366454-16366473 | Msa0059510:CDS | 40.0% |
| TTGTGATCATTGCTACCTCA+AGG | - | chr1_2:16366516-16366535 | Msa0059510:CDS | 40.0% | |
| GAAATGTTAACCAGTGCCTT+TGG | - | chr1_2:16366616-16366635 | Msa0059510:CDS | 40.0% | |
| ! | GGGTTTTTCTCCAAAGTTAG+AGG | + | chr1_2:16365198-16365217 | None:intergenic | 40.0% |
| CAGGAAGAAGAACAAGTTTG+TGG | + | chr1_2:16365281-16365300 | None:intergenic | 40.0% | |
| ! | CAAACTTGTTCTTCTTCCTG+TGG | - | chr1_2:16365281-16365300 | Msa0059510:CDS | 40.0% |
| AGCGGTATAAGAAGAAGTGA+GGG | + | chr1_2:16365511-16365530 | None:intergenic | 40.0% | |
| TAGCGGTATAAGAAGAAGTG+AGG | + | chr1_2:16365512-16365531 | None:intergenic | 40.0% | |
| TACTTATCCACAGCGTTACT+AGG | + | chr1_2:16365677-16365696 | None:intergenic | 40.0% | |
| GCTCCAATATTCCAAGTTGT+GGG | + | chr1_2:16365757-16365776 | None:intergenic | 40.0% | |
| TTGTTACTCTCACATCCTTC+TGG | - | chr1_2:16365795-16365814 | Msa0059510:intron | 40.0% | |
| TGTTACTCTCACATCCTTCT+GGG | - | chr1_2:16365796-16365815 | Msa0059510:intron | 40.0% | |
| TATCTTACGACCGATGGAAT+AGG | - | chr1_2:16366100-16366119 | Msa0059510:CDS | 40.0% | |
| ! | ACTGTACCACTAGACCTTTT+TGG | - | chr1_2:16366289-16366308 | Msa0059510:CDS | 40.0% |
| TGTCATCCAAAAAGGTCTAG+TGG | + | chr1_2:16366298-16366317 | None:intergenic | 40.0% | |
| !! | ATCGATATTCAGAAGGCACT+AGG | - | chr1_2:16366454-16366473 | Msa0059510:CDS | 40.0% |
| TTGTGATCATTGCTACCTCA+AGG | - | chr1_2:16366516-16366535 | Msa0059510:CDS | 40.0% | |
| GAAATGTTAACCAGTGCCTT+TGG | - | chr1_2:16366616-16366635 | Msa0059510:CDS | 40.0% | |
| TACTGTTACCACAGTGGTCT+GGG | + | chr1_2:16365349-16365368 | None:intergenic | 45.0% | |
| TGGTAACAGTACGTACGAGT+TGG | - | chr1_2:16365358-16365377 | Msa0059510:CDS | 45.0% | |
| TAAGAAGAAGTGAGGGAGAG+AGG | + | chr1_2:16365504-16365523 | None:intergenic | 45.0% | |
| CGTGGAAGATAAATCAGACG+TGG | + | chr1_2:16365591-16365610 | None:intergenic | 45.0% | |
| TTATCCACAGCGTTACTAGG+TGG | + | chr1_2:16365674-16365693 | None:intergenic | 45.0% | |
| TACGGATACCACTTCATGCA+TGG | - | chr1_2:16365700-16365719 | Msa0059510:intron | 45.0% | |
| ACGGATACCACTTCATGCAT+GGG | - | chr1_2:16365701-16365720 | Msa0059510:intron | 45.0% | |
| GGACCCACAACTTGGAATAT+TGG | - | chr1_2:16365751-16365770 | Msa0059510:intron | 45.0% | |
| GGCTCCAATATTCCAAGTTG+TGG | + | chr1_2:16365758-16365777 | None:intergenic | 45.0% | |
| ACAAGCTTAACACGGCATTG+AGG | + | chr1_2:16365779-16365798 | None:intergenic | 45.0% | |
| GTTACTCTCACATCCTTCTG+GGG | - | chr1_2:16365797-16365816 | Msa0059510:intron | 45.0% | |
| GTAAGTATATGCTCCCCAGA+AGG | + | chr1_2:16365813-16365832 | None:intergenic | 45.0% | |
| !! | ATTCAGAAGGCACTAGGCTA+TGG | - | chr1_2:16366460-16366479 | Msa0059510:CDS | 45.0% |
| ATGACAAAAGGCTTGCATCC+AGG | + | chr1_2:16366497-16366516 | None:intergenic | 45.0% | |
| AACACTGAATCTCGCCAGTA+GGG | + | chr1_2:16366543-16366562 | None:intergenic | 45.0% | |
| TAACACTGAATCTCGCCAGT+AGG | + | chr1_2:16366544-16366563 | None:intergenic | 45.0% | |
| TACTGTTACCACAGTGGTCT+GGG | + | chr1_2:16365349-16365368 | None:intergenic | 45.0% | |
| TGGTAACAGTACGTACGAGT+TGG | - | chr1_2:16365358-16365377 | Msa0059510:CDS | 45.0% | |
| TAAGAAGAAGTGAGGGAGAG+AGG | + | chr1_2:16365504-16365523 | None:intergenic | 45.0% | |
| CGTGGAAGATAAATCAGACG+TGG | + | chr1_2:16365591-16365610 | None:intergenic | 45.0% | |
| TTATCCACAGCGTTACTAGG+TGG | + | chr1_2:16365674-16365693 | None:intergenic | 45.0% | |
| TACGGATACCACTTCATGCA+TGG | - | chr1_2:16365700-16365719 | Msa0059510:intron | 45.0% | |
| ACGGATACCACTTCATGCAT+GGG | - | chr1_2:16365701-16365720 | Msa0059510:intron | 45.0% | |
| GGACCCACAACTTGGAATAT+TGG | - | chr1_2:16365751-16365770 | Msa0059510:intron | 45.0% | |
| GGCTCCAATATTCCAAGTTG+TGG | + | chr1_2:16365758-16365777 | None:intergenic | 45.0% | |
| ACAAGCTTAACACGGCATTG+AGG | + | chr1_2:16365779-16365798 | None:intergenic | 45.0% | |
| GTTACTCTCACATCCTTCTG+GGG | - | chr1_2:16365797-16365816 | Msa0059510:intron | 45.0% | |
| GTAAGTATATGCTCCCCAGA+AGG | + | chr1_2:16365813-16365832 | None:intergenic | 45.0% | |
| !! | ATTCAGAAGGCACTAGGCTA+TGG | - | chr1_2:16366460-16366479 | Msa0059510:CDS | 45.0% |
| ATGACAAAAGGCTTGCATCC+AGG | + | chr1_2:16366497-16366516 | None:intergenic | 45.0% | |
| AACACTGAATCTCGCCAGTA+GGG | + | chr1_2:16366543-16366562 | None:intergenic | 45.0% | |
| TAACACTGAATCTCGCCAGT+AGG | + | chr1_2:16366544-16366563 | None:intergenic | 45.0% | |
| !!! | ATAAATATTATTTCTTTTAT+AGG | - | chr1_2:16366418-16366437 | Msa0059510:CDS | 5.0% |
| !!! | ATAAATATTATTTCTTTTAT+AGG | - | chr1_2:16366418-16366437 | Msa0059510:CDS | 5.0% |
| AAACATGACCCAGACCACTG+TGG | - | chr1_2:16365338-16365357 | Msa0059510:CDS | 50.0% | |
| GTACTGTTACCACAGTGGTC+TGG | + | chr1_2:16365350-16365369 | None:intergenic | 50.0% | |
| CGTACGTACTGTTACCACAG+TGG | + | chr1_2:16365355-16365374 | None:intergenic | 50.0% | |
| GGGAGAGAGGAGCAATTGTT+GGG | + | chr1_2:16365491-16365510 | None:intergenic | 50.0% | |
| AGGGAGAGAGGAGCAATTGT+TGG | + | chr1_2:16365492-16365511 | None:intergenic | 50.0% | |
| AAGTCCACCTAGTAACGCTG+TGG | - | chr1_2:16365667-16365686 | Msa0059510:intron | 50.0% | |
| ! | GTGTTGACCCATGCATGAAG+TGG | + | chr1_2:16365711-16365730 | None:intergenic | 50.0% |
| ATTGTTGGGGACCCACAACT+TGG | - | chr1_2:16365743-16365762 | Msa0059510:intron | 50.0% | |
| AGGTCTTACGGTAGTCGTCT+CGG | + | chr1_2:16366567-16366586 | None:intergenic | 50.0% | |
| AAACATGACCCAGACCACTG+TGG | - | chr1_2:16365338-16365357 | Msa0059510:CDS | 50.0% | |
| GTACTGTTACCACAGTGGTC+TGG | + | chr1_2:16365350-16365369 | None:intergenic | 50.0% | |
| CGTACGTACTGTTACCACAG+TGG | + | chr1_2:16365355-16365374 | None:intergenic | 50.0% | |
| GGGAGAGAGGAGCAATTGTT+GGG | + | chr1_2:16365491-16365510 | None:intergenic | 50.0% | |
| AGGGAGAGAGGAGCAATTGT+TGG | + | chr1_2:16365492-16365511 | None:intergenic | 50.0% | |
| AAGTCCACCTAGTAACGCTG+TGG | - | chr1_2:16365667-16365686 | Msa0059510:intron | 50.0% | |
| ! | GTGTTGACCCATGCATGAAG+TGG | + | chr1_2:16365711-16365730 | None:intergenic | 50.0% |
| ATTGTTGGGGACCCACAACT+TGG | - | chr1_2:16365743-16365762 | Msa0059510:intron | 50.0% | |
| AGGTCTTACGGTAGTCGTCT+CGG | + | chr1_2:16366567-16366586 | None:intergenic | 50.0% | |
| TGCTACCTCAAGGACCCTAC+TGG | - | chr1_2:16366526-16366545 | Msa0059510:CDS | 55.0% | |
| TGCTACCTCAAGGACCCTAC+TGG | - | chr1_2:16366526-16366545 | Msa0059510:CDS | 55.0% | |
| TCTCGCCAGTAGGGTCCTTG+AGG | + | chr1_2:16366534-16366553 | None:intergenic | 60.0% | |
| TCTCGCCAGTAGGGTCCTTG+AGG | + | chr1_2:16366534-16366553 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 16365185 | 16366640 | 16365185 | ID=Msa0059510;Name=Msa0059510 |
| chr1_2 | mRNA | 16365185 | 16366640 | 16365185 | ID=Msa0059510-mRNA-1;Parent=Msa0059510;Name=Msa0059510-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.5|1|1|1|2|25|280 |
| chr1_2 | exon | 16365185 | 16365385 | 16365185 | ID=Msa0059510-mRNA-1:exon:6578;Parent=Msa0059510-mRNA-1 |
| chr1_2 | exon | 16365974 | 16366640 | 16365974 | ID=Msa0059510-mRNA-1:exon:6577;Parent=Msa0059510-mRNA-1 |
| chr1_2 | CDS | 16365974 | 16366640 | 16365974 | ID=Msa0059510-mRNA-1:cds;Parent=Msa0059510-mRNA-1 |
| chr1_2 | CDS | 16365210 | 16365385 | 16365210 | ID=Msa0059510-mRNA-1:cds;Parent=Msa0059510-mRNA-1 |
| chr1_2 | three_prime_UTR | 16365185 | 16365209 | 16365185 | ID=Msa0059510-mRNA-1:three_prime_utr;Parent=Msa0059510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
