Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059530 | A0A072VQK0 | 79.705 | 271 | 51 | 4 | 1 | 269 | 1 | 269 | 2.67e-148 | 425 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009610 | Msa0059530 | 0.803016 | 4.262241e-49 | -8.615850e-47 |
| Msa0024160 | Msa0059530 | 0.819324 | 1.233265e-52 | -8.615850e-47 |
| Msa0059510 | Msa0059530 | 0.886445 | 3.398937e-72 | -8.615850e-47 |
| Msa0059530 | Msa0357380 | 0.800867 | 1.178492e-48 | -8.615850e-47 |
| Msa0059530 | Msa0357390 | 0.805887 | 1.074217e-49 | -8.615850e-47 |
| Msa0059530 | Msa0389050 | 0.801007 | 1.103254e-48 | -8.615850e-47 |
| Msa0059530 | Msa0414070 | 0.801890 | 7.271712e-49 | -8.615850e-47 |
| Msa0059530 | Msa0646390 | 0.802118 | 6.530491e-49 | -8.615850e-47 |
| Msa0059530 | Msa0733400 | 0.801636 | 8.200299e-49 | -8.615850e-47 |
| Msa0059530 | Msa0811940 | 0.818468 | 1.929489e-52 | -8.615850e-47 |
| Msa0059530 | Msa0948340 | 0.829182 | 5.941078e-55 | -8.615850e-47 |
| Msa0059530 | Msa0988500 | 0.807500 | 4.904908e-50 | -8.615850e-47 |
| Msa0059530 | Msa1080470 | 0.804748 | 1.861047e-49 | -8.615850e-47 |
| Msa0059530 | Msa1287700 | 0.805647 | 1.206465e-49 | -8.615850e-47 |
| Msa0059530 | Msa1464100 | 0.822262 | 2.602651e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0059530 | MtrunA17_Chr1g0158661 | 77.007 | 274 | 59 | 4 | 1 | 272 | 1 | 272 | 3.27e-144 | 420 |
| Msa0059530 | MtrunA17_Chr1g0158631 | 75.281 | 267 | 54 | 4 | 1 | 257 | 1 | 265 | 3.17e-135 | 398 |
| Msa0059530 | MtrunA17_Chr3g0088331 | 41.909 | 241 | 113 | 12 | 37 | 265 | 44 | 269 | 3.23e-43 | 148 |
| Msa0059530 | MtrunA17_Chr1g0157911 | 41.767 | 249 | 123 | 11 | 33 | 265 | 35 | 277 | 9.29e-42 | 152 |
| Msa0059530 | MtrunA17_Chr1g0158061 | 40.726 | 248 | 117 | 9 | 37 | 267 | 33 | 267 | 2.56e-41 | 144 |
| Msa0059530 | MtrunA17_Chr1g0157791 | 39.474 | 266 | 126 | 9 | 13 | 263 | 3 | 248 | 4.02e-41 | 150 |
| Msa0059530 | MtrunA17_Chr1g0158151 | 39.922 | 258 | 116 | 10 | 37 | 271 | 34 | 275 | 4.41e-40 | 147 |
| Msa0059530 | MtrunA17_Chr1g0158041 | 39.700 | 267 | 116 | 11 | 30 | 267 | 26 | 276 | 8.81e-40 | 146 |
| Msa0059530 | MtrunA17_Chr1g0158411 | 39.831 | 236 | 121 | 7 | 36 | 261 | 51 | 275 | 2.16e-39 | 145 |
| Msa0059530 | MtrunA17_Chr1g0157881 | 33.571 | 280 | 119 | 8 | 37 | 258 | 58 | 328 | 2.25e-38 | 142 |
| Msa0059530 | MtrunA17_Chr1g0158731 | 37.349 | 249 | 128 | 7 | 16 | 249 | 11 | 246 | 2.75e-38 | 136 |
| Msa0059530 | MtrunA17_Chr1g0157961 | 44.186 | 215 | 101 | 7 | 37 | 241 | 41 | 246 | 7.29e-38 | 135 |
| Msa0059530 | MtrunA17_Chr1g0157861 | 36.260 | 262 | 124 | 10 | 37 | 257 | 43 | 302 | 9.33e-37 | 138 |
| Msa0059530 | MtrunA17_Chr1g0158191 | 39.419 | 241 | 118 | 9 | 16 | 236 | 4 | 236 | 2.41e-36 | 137 |
| Msa0059530 | MtrunA17_Chr1g0158331 | 37.805 | 246 | 121 | 11 | 37 | 259 | 51 | 287 | 1.21e-35 | 130 |
| Msa0059530 | MtrunA17_Chr1g0158461 | 32.082 | 293 | 147 | 8 | 13 | 264 | 19 | 300 | 3.04e-35 | 128 |
| Msa0059530 | MtrunA17_Chr1g0158761 | 34.241 | 257 | 137 | 8 | 16 | 263 | 9 | 242 | 4.35e-35 | 133 |
| Msa0059530 | MtrunA17_Chr1g0157991 | 41.284 | 218 | 107 | 6 | 37 | 241 | 36 | 245 | 1.04e-34 | 132 |
| Msa0059530 | MtrunA17_Chr6g0467711 | 37.405 | 262 | 126 | 14 | 23 | 260 | 22 | 269 | 1.59e-33 | 129 |
| Msa0059530 | MtrunA17_Chr1g0158571 | 68.085 | 94 | 26 | 3 | 165 | 257 | 2 | 92 | 2.25e-33 | 127 |
| Msa0059530 | MtrunA17_Chr1g0158121 | 62.195 | 82 | 31 | 0 | 37 | 118 | 37 | 118 | 1.92e-27 | 103 |
| Msa0059530 | MtrunA17_Chr1g0158541 | 30.147 | 272 | 146 | 12 | 16 | 259 | 17 | 272 | 5.08e-25 | 104 |
| Msa0059530 | MtrunA17_Chr1g0158301 | 30.970 | 268 | 145 | 13 | 16 | 259 | 19 | 270 | 2.32e-24 | 102 |
| Msa0059530 | MtrunA17_Chr1g0160701 | 33.784 | 222 | 117 | 10 | 34 | 241 | 43 | 248 | 6.55e-23 | 98.2 |
| Msa0059530 | MtrunA17_Chr1g0160661 | 29.104 | 268 | 160 | 9 | 1 | 259 | 21 | 267 | 4.60e-22 | 95.1 |
| Msa0059530 | MtrunA17_Chr1g0160761 | 31.120 | 241 | 149 | 8 | 17 | 247 | 7 | 240 | 3.54e-21 | 92.8 |
| Msa0059530 | MtrunA17_Chr1g0160721 | 29.688 | 256 | 147 | 10 | 16 | 259 | 18 | 252 | 7.85e-21 | 92.0 |
| Msa0059530 | MtrunA17_Chr1g0160711 | 28.631 | 241 | 148 | 8 | 31 | 260 | 22 | 249 | 1.05e-18 | 85.9 |
| Msa0059530 | MtrunA17_Chr1g0160561 | 33.186 | 226 | 121 | 11 | 33 | 241 | 31 | 243 | 1.07e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCACAACTCTTGCATATC+TGG | 0.189605 | 1_2:+16456309 | None:intergenic |
| ATTTACGACAATAACGTTAT+AGG | 0.262580 | 1_2:-16455713 | Msa0059530:intron |
| GTTGTATGATAGATATTATT+TGG | 0.268701 | 1_2:-16456116 | Msa0059530:CDS |
| TCTAGCATTGCGAGTGAAAA+TGG | 0.269079 | 1_2:-16456359 | Msa0059530:exon |
| CAATTGTTGGGTTGAATGTT+TGG | 0.270020 | 1_2:+16456049 | None:intergenic |
| TTGTTACTCTCACATCCTTC+TGG | 0.271931 | 1_2:-16455748 | Msa0059530:CDS |
| GCTATGGATTTGAAATTTCC+TGG | 0.305840 | 1_2:-16455140 | Msa0059530:CDS |
| TTCACTCGCAATGCTAGATT+TGG | 0.315935 | 1_2:+16456364 | None:intergenic |
| CCGATTACATTGATTTATCT+AGG | 0.323521 | 1_2:-16455922 | Msa0059530:CDS |
| TAAATGTTAACCAGTGCCTT+TGG | 0.344253 | 1_2:-16455000 | None:intergenic |
| AGAGAGAGAGGAGCAATTGT+TGG | 0.344267 | 1_2:+16456036 | None:intergenic |
| ACAACATATATGTAATTGTT+GGG | 0.350079 | 1_2:-16455814 | Msa0059530:CDS |
| GGACCCACAACTTGGAATAT+TGG | 0.351925 | 1_2:-16455792 | Msa0059530:CDS |
| GTACACTCCATGTAAATTAC+AGG | 0.363818 | 1_2:+16455899 | None:intergenic |
| TGTTACTCTCACATCCTTCT+GGG | 0.367632 | 1_2:-16455747 | Msa0059530:CDS |
| CGCTGTGGATAAGTATTATA+CGG | 0.380961 | 1_2:-16455861 | Msa0059530:CDS |
| GTACTGTTACCACAGTGGTC+TGG | 0.396707 | 1_2:+16456178 | None:intergenic |
| TCTGAATGGATTAGTTATGT+TGG | 0.397719 | 1_2:+16456213 | None:intergenic |
| CCTAGATAAATCAATGTAAT+CGG | 0.416399 | 1_2:+16455922 | None:intergenic |
| AAATGTTAACCAGTGCCTTT+GGG | 0.416492 | 1_2:-16454999 | None:intergenic |
| AATTGTTGGGTTGAATGTTT+GGG | 0.419800 | 1_2:+16456050 | None:intergenic |
| GAGAGAGAGGAGCAATTGTT+GGG | 0.449093 | 1_2:+16456037 | None:intergenic |
| GCAATTATCACAAGGACAAA+AGG | 0.458647 | 1_2:+16455110 | None:intergenic |
| ATCTAGGCCTGTAATTTACA+TGG | 0.460518 | 1_2:-16455906 | Msa0059530:CDS |
| CACAACATATATGTAATTGT+TGG | 0.460897 | 1_2:-16455815 | Msa0059530:CDS |
| GGTCTTACAGTAGTCGTCTC+TGG | 0.462164 | 1_2:+16455053 | None:intergenic |
| TACTGTTACCACAGTGGTCT+GGG | 0.470002 | 1_2:+16456179 | None:intergenic |
| GGCTCCAATATTCCAAGTTG+TGG | 0.482055 | 1_2:+16455788 | None:intergenic |
| CAGGAAGAAGAACAAGTTTG+TGG | 0.492234 | 1_2:+16456247 | None:intergenic |
| ATTCAGAAGGCACTAGGCTA+TGG | 0.492318 | 1_2:-16455156 | Msa0059530:CDS |
| TACTTATCCACAGCGTTACT+AGG | 0.493264 | 1_2:+16455869 | None:intergenic |
| ATCACAACTCTTGCATATCT+GGG | 0.496177 | 1_2:+16456310 | None:intergenic |
| TACGGATACCACTTCATGCA+TGG | 0.498719 | 1_2:-16455843 | Msa0059530:CDS |
| ATTGTTGGGGACCCACAACT+TGG | 0.505521 | 1_2:-16455800 | Msa0059530:CDS |
| TAAGAAGAAATGAGAGAGAG+AGG | 0.506886 | 1_2:+16456024 | None:intergenic |
| AGGACAAAAGGCTTGCATCC+AGG | 0.510377 | 1_2:+16455122 | None:intergenic |
| ATTGTAATCTTAAGTCAAGA+TGG | 0.510542 | 1_2:+16456412 | None:intergenic |
| ACGTTATTGTCGTAAATATG+TGG | 0.518806 | 1_2:+16455719 | None:intergenic |
| CAAACTTGTTCTTCTTCCTG+TGG | 0.522063 | 1_2:-16456244 | Msa0059530:CDS |
| TGCCTCTGTCCCAAAGGCAC+TGG | 0.530737 | 1_2:+16454990 | None:intergenic |
| TGCTACCTCAAGGACCCTAC+TGG | 0.537359 | 1_2:-16455090 | Msa0059530:CDS |
| GAAAATGTAACAGAGGACTA+AGG | 0.542822 | 1_2:+16455032 | None:intergenic |
| GCTCCAATATTCCAAGTTGT+GGG | 0.553848 | 1_2:+16455789 | None:intergenic |
| AACACTGAATCTCGCCAGTA+GGG | 0.565644 | 1_2:+16455076 | None:intergenic |
| GAACACTGAATCTCGCCAGT+AGG | 0.583794 | 1_2:+16455075 | None:intergenic |
| TTGTGATAATTGCTACCTCA+AGG | 0.598355 | 1_2:-16455100 | Msa0059530:CDS |
| ACGGATACCACTTCATGCAT+GGG | 0.598626 | 1_2:-16455842 | Msa0059530:CDS |
| GTTACTCTCACATCCTTCTG+GGG | 0.604732 | 1_2:-16455746 | Msa0059530:CDS |
| TCTCGCCAGTAGGGTCCTTG+AGG | 0.613174 | 1_2:+16455085 | None:intergenic |
| ATCATACATCGATATTCAGA+AGG | 0.615231 | 1_2:-16455169 | Msa0059530:CDS |
| TGGTAACAGTACGTACGAGT+TGG | 0.621121 | 1_2:-16456167 | Msa0059530:CDS |
| ATCGATATTCAGAAGGCACT+AGG | 0.625875 | 1_2:-16455162 | Msa0059530:CDS |
| CAACATATATGTAATTGTTG+GGG | 0.630534 | 1_2:-16455813 | Msa0059530:CDS |
| GTGTTGACCCATGCATGAAG+TGG | 0.648799 | 1_2:+16455835 | None:intergenic |
| AATATGTGGATCTCCCCAGA+AGG | 0.650518 | 1_2:+16455733 | None:intergenic |
| TTATCCACAGCGTTACTAGG+TGG | 0.678496 | 1_2:+16455872 | None:intergenic |
| ACAAGCTTAACACGGCATTG+AGG | 0.681882 | 1_2:+16455767 | None:intergenic |
| TTGAGGTAGCAATTATCACA+AGG | 0.689002 | 1_2:+16455102 | None:intergenic |
| ACGTAATGAAAATGTAACAG+AGG | 0.691793 | 1_2:+16455025 | None:intergenic |
| AAGTCCACCTAGTAACGCTG+TGG | 0.692399 | 1_2:-16455876 | Msa0059530:CDS |
| TGAGAGTAACAAGCTTAACA+CGG | 0.706562 | 1_2:+16455759 | None:intergenic |
| GTAATCGGAAAACTCATACG+TGG | 0.707074 | 1_2:+16455937 | None:intergenic |
| CGTACGTACTGTTACCACAG+TGG | 0.756220 | 1_2:+16456173 | None:intergenic |
| AAACATGACCCAGACCACTG+TGG | 0.761857 | 1_2:-16456187 | Msa0059530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATGTTTTTTTTTGAA+GGG | + | chr1_2:16455838-16455857 | None:intergenic | 10.0% |
| !!! | TAAAATATGTTTTTTTTTGA+AGG | + | chr1_2:16455839-16455858 | None:intergenic | 10.0% |
| !!! | TTTTATATGTTGATTATATA+CGG | - | chr1_2:16456176-16456195 | Msa0059530:CDS | 10.0% |
| !!! | AAAATATGTTTTTTTTTGAA+GGG | + | chr1_2:16455838-16455857 | None:intergenic | 10.0% |
| !!! | TAAAATATGTTTTTTTTTGA+AGG | + | chr1_2:16455839-16455858 | None:intergenic | 10.0% |
| !!! | TTTTATATGTTGATTATATA+CGG | - | chr1_2:16456176-16456195 | Msa0059530:CDS | 10.0% |
| !! | GTTGTATGATAGATATTATT+TGG | - | chr1_2:16455298-16455317 | Msa0059530:intron | 20.0% |
| !!! | TGTATGAATTAGTATGTTTT+CGG | + | chr1_2:16455433-16455452 | None:intergenic | 20.0% |
| !! | ACAACATATATGTAATTGTT+GGG | - | chr1_2:16455600-16455619 | Msa0059530:intron | 20.0% |
| !! | GTTGTATGATAGATATTATT+TGG | - | chr1_2:16455298-16455317 | Msa0059530:intron | 20.0% |
| !!! | TGTATGAATTAGTATGTTTT+CGG | + | chr1_2:16455433-16455452 | None:intergenic | 20.0% |
| !! | ACAACATATATGTAATTGTT+GGG | - | chr1_2:16455600-16455619 | Msa0059530:intron | 20.0% |
| ! | ATTGTAATCTTAAGTCAAGA+TGG | + | chr1_2:16455005-16455024 | None:intergenic | 25.0% |
| !! | GTATGAATTAGTATGTTTTC+GGG | + | chr1_2:16455432-16455451 | None:intergenic | 25.0% |
| ! | CCTAGATAAATCAATGTAAT+CGG | + | chr1_2:16455495-16455514 | None:intergenic | 25.0% |
| ! | CACAACATATATGTAATTGT+TGG | - | chr1_2:16455599-16455618 | Msa0059530:intron | 25.0% |
| ! | CAACATATATGTAATTGTTG+GGG | - | chr1_2:16455601-16455620 | Msa0059530:intron | 25.0% |
| ! | ATTTACGACAATAACGTTAT+AGG | - | chr1_2:16455701-16455720 | Msa0059530:intron | 25.0% |
| ! | ATATAGTCAAATTGAGTCAT+TGG | + | chr1_2:16455757-16455776 | None:intergenic | 25.0% |
| ! | GACGATATACAATATATTGT+CGG | - | chr1_2:16455870-16455889 | Msa0059530:CDS | 25.0% |
| !! | ATTCAATTGACTGTTTTACA+TGG | + | chr1_2:16456002-16456021 | None:intergenic | 25.0% |
| ! | ATTGTAATCTTAAGTCAAGA+TGG | + | chr1_2:16455005-16455024 | None:intergenic | 25.0% |
| !! | GTATGAATTAGTATGTTTTC+GGG | + | chr1_2:16455432-16455451 | None:intergenic | 25.0% |
| ! | CCTAGATAAATCAATGTAAT+CGG | + | chr1_2:16455495-16455514 | None:intergenic | 25.0% |
| ! | CACAACATATATGTAATTGT+TGG | - | chr1_2:16455599-16455618 | Msa0059530:intron | 25.0% |
| ! | CAACATATATGTAATTGTTG+GGG | - | chr1_2:16455601-16455620 | Msa0059530:intron | 25.0% |
| ! | ATTTACGACAATAACGTTAT+AGG | - | chr1_2:16455701-16455720 | Msa0059530:intron | 25.0% |
| ! | ATATAGTCAAATTGAGTCAT+TGG | + | chr1_2:16455757-16455776 | None:intergenic | 25.0% |
| ! | GACGATATACAATATATTGT+CGG | - | chr1_2:16455870-16455889 | Msa0059530:CDS | 25.0% |
| !! | ATTCAATTGACTGTTTTACA+TGG | + | chr1_2:16456002-16456021 | None:intergenic | 25.0% |
| !! | GTACTAGAGTACAGTTTTAA+AGG | + | chr1_2:16455031-16455050 | None:intergenic | 30.0% |
| ! | TATGTTGGAAATTTTTCCAC+AGG | + | chr1_2:16455189-16455208 | None:intergenic | 30.0% |
| !! | TCTGAATGGATTAGTTATGT+TGG | + | chr1_2:16455204-16455223 | None:intergenic | 30.0% |
| !! | AATTGTTGGGTTGAATGTTT+GGG | + | chr1_2:16455367-16455386 | None:intergenic | 30.0% |
| !!! | TATGTTTTCGGGTAAAATTG+TGG | + | chr1_2:16455421-16455440 | None:intergenic | 30.0% |
| !! | CCGATTACATTGATTTATCT+AGG | - | chr1_2:16455492-16455511 | Msa0059530:intron | 30.0% |
| ACGTTATTGTCGTAAATATG+TGG | + | chr1_2:16455698-16455717 | None:intergenic | 30.0% | |
| ATCATACATCGATATTCAGA+AGG | - | chr1_2:16456245-16456264 | Msa0059530:CDS | 30.0% | |
| ACGTAATGAAAATGTAACAG+AGG | + | chr1_2:16456392-16456411 | None:intergenic | 30.0% | |
| !! | GTACTAGAGTACAGTTTTAA+AGG | + | chr1_2:16455031-16455050 | None:intergenic | 30.0% |
| ! | TATGTTGGAAATTTTTCCAC+AGG | + | chr1_2:16455189-16455208 | None:intergenic | 30.0% |
| !! | TCTGAATGGATTAGTTATGT+TGG | + | chr1_2:16455204-16455223 | None:intergenic | 30.0% |
| !! | AATTGTTGGGTTGAATGTTT+GGG | + | chr1_2:16455367-16455386 | None:intergenic | 30.0% |
| !!! | TATGTTTTCGGGTAAAATTG+TGG | + | chr1_2:16455421-16455440 | None:intergenic | 30.0% |
| !! | CCGATTACATTGATTTATCT+AGG | - | chr1_2:16455492-16455511 | Msa0059530:intron | 30.0% |
| ACGTTATTGTCGTAAATATG+TGG | + | chr1_2:16455698-16455717 | None:intergenic | 30.0% | |
| ATCATACATCGATATTCAGA+AGG | - | chr1_2:16456245-16456264 | Msa0059530:CDS | 30.0% | |
| ACGTAATGAAAATGTAACAG+AGG | + | chr1_2:16456392-16456411 | None:intergenic | 30.0% | |
| ! | GGGTTTTTCTACAAAGTTAG+AGG | + | chr1_2:16455087-16455106 | None:intergenic | 35.0% |
| ATCACAACTCTTGCATATCT+GGG | + | chr1_2:16455107-16455126 | None:intergenic | 35.0% | |
| TATCACAACTCTTGCATATC+TGG | + | chr1_2:16455108-16455127 | None:intergenic | 35.0% | |
| !! | GTTTGTGGATAAGTTTTGTG+TGG | + | chr1_2:16455155-16455174 | None:intergenic | 35.0% |
| !!! | GGGTCATGTTTTAATCTGAA+TGG | + | chr1_2:16455218-16455237 | None:intergenic | 35.0% |
| !! | CAATTGTTGGGTTGAATGTT+TGG | + | chr1_2:16455368-16455387 | None:intergenic | 35.0% |
| TAAGAAGAAATGAGAGAGAG+AGG | + | chr1_2:16455393-16455412 | None:intergenic | 35.0% | |
| ATCTAGGCCTGTAATTTACA+TGG | - | chr1_2:16455508-16455527 | Msa0059530:intron | 35.0% | |
| GTACACTCCATGTAAATTAC+AGG | + | chr1_2:16455518-16455537 | None:intergenic | 35.0% | |
| CGCTGTGGATAAGTATTATA+CGG | - | chr1_2:16455553-16455572 | Msa0059530:intron | 35.0% | |
| TGAGAGTAACAAGCTTAACA+CGG | + | chr1_2:16455658-16455677 | None:intergenic | 35.0% | |
| ! | GAGTCATTGGTTATAGAAGA+AGG | + | chr1_2:16455744-16455763 | None:intergenic | 35.0% |
| ATTGAATATCTTACGACCGA+TGG | - | chr1_2:16456015-16456034 | Msa0059530:CDS | 35.0% | |
| ! | GCTATGGATTTGAAATTTCC+TGG | - | chr1_2:16456274-16456293 | Msa0059530:CDS | 35.0% |
| GCAATTATCACAAGGACAAA+AGG | + | chr1_2:16456307-16456326 | None:intergenic | 35.0% | |
| TTGAGGTAGCAATTATCACA+AGG | + | chr1_2:16456315-16456334 | None:intergenic | 35.0% | |
| TTGTGATAATTGCTACCTCA+AGG | - | chr1_2:16456314-16456333 | Msa0059530:CDS | 35.0% | |
| GAAAATGTAACAGAGGACTA+AGG | + | chr1_2:16456385-16456404 | None:intergenic | 35.0% | |
| ! | GGGTTTTTCTACAAAGTTAG+AGG | + | chr1_2:16455087-16455106 | None:intergenic | 35.0% |
| ATCACAACTCTTGCATATCT+GGG | + | chr1_2:16455107-16455126 | None:intergenic | 35.0% | |
| TATCACAACTCTTGCATATC+TGG | + | chr1_2:16455108-16455127 | None:intergenic | 35.0% | |
| !! | GTTTGTGGATAAGTTTTGTG+TGG | + | chr1_2:16455155-16455174 | None:intergenic | 35.0% |
| !!! | GGGTCATGTTTTAATCTGAA+TGG | + | chr1_2:16455218-16455237 | None:intergenic | 35.0% |
| !! | CAATTGTTGGGTTGAATGTT+TGG | + | chr1_2:16455368-16455387 | None:intergenic | 35.0% |
| TAAGAAGAAATGAGAGAGAG+AGG | + | chr1_2:16455393-16455412 | None:intergenic | 35.0% | |
| ATCTAGGCCTGTAATTTACA+TGG | - | chr1_2:16455508-16455527 | Msa0059530:intron | 35.0% | |
| GTACACTCCATGTAAATTAC+AGG | + | chr1_2:16455518-16455537 | None:intergenic | 35.0% | |
| CGCTGTGGATAAGTATTATA+CGG | - | chr1_2:16455553-16455572 | Msa0059530:intron | 35.0% | |
| TGAGAGTAACAAGCTTAACA+CGG | + | chr1_2:16455658-16455677 | None:intergenic | 35.0% | |
| ! | GAGTCATTGGTTATAGAAGA+AGG | + | chr1_2:16455744-16455763 | None:intergenic | 35.0% |
| ATTGAATATCTTACGACCGA+TGG | - | chr1_2:16456015-16456034 | Msa0059530:CDS | 35.0% | |
| ! | GCTATGGATTTGAAATTTCC+TGG | - | chr1_2:16456274-16456293 | Msa0059530:CDS | 35.0% |
| GCAATTATCACAAGGACAAA+AGG | + | chr1_2:16456307-16456326 | None:intergenic | 35.0% | |
| TTGAGGTAGCAATTATCACA+AGG | + | chr1_2:16456315-16456334 | None:intergenic | 35.0% | |
| TTGTGATAATTGCTACCTCA+AGG | - | chr1_2:16456314-16456333 | Msa0059530:CDS | 35.0% | |
| GAAAATGTAACAGAGGACTA+AGG | + | chr1_2:16456385-16456404 | None:intergenic | 35.0% | |
| TTCACTCGCAATGCTAGATT+TGG | + | chr1_2:16455053-16455072 | None:intergenic | 40.0% | |
| TCTAGCATTGCGAGTGAAAA+TGG | - | chr1_2:16455055-16455074 | Msa0059530:CDS | 40.0% | |
| CAGGAAGAAGAACAAGTTTG+TGG | + | chr1_2:16455170-16455189 | None:intergenic | 40.0% | |
| ! | CAAACTTGTTCTTCTTCCTG+TGG | - | chr1_2:16455170-16455189 | Msa0059530:CDS | 40.0% |
| GTAATCGGAAAACTCATACG+TGG | + | chr1_2:16455480-16455499 | None:intergenic | 40.0% | |
| TACTTATCCACAGCGTTACT+AGG | + | chr1_2:16455548-16455567 | None:intergenic | 40.0% | |
| GCTCCAATATTCCAAGTTGT+GGG | + | chr1_2:16455628-16455647 | None:intergenic | 40.0% | |
| TTGTTACTCTCACATCCTTC+TGG | - | chr1_2:16455666-16455685 | Msa0059530:intron | 40.0% | |
| TGTTACTCTCACATCCTTCT+GGG | - | chr1_2:16455667-16455686 | Msa0059530:intron | 40.0% | |
| TATCTTACGACCGATGGAAT+AGG | - | chr1_2:16456021-16456040 | Msa0059530:CDS | 40.0% | |
| ATCTTACGACCGATGGAATA+GGG | - | chr1_2:16456022-16456041 | Msa0059530:CDS | 40.0% | |
| TCATAGTTGCCCTATTCCAT+CGG | + | chr1_2:16456034-16456053 | None:intergenic | 40.0% | |
| GGAATAGGGCAACTATGATA+TGG | - | chr1_2:16456036-16456055 | Msa0059530:CDS | 40.0% | |
| !! | ATCGATATTCAGAAGGCACT+AGG | - | chr1_2:16456252-16456271 | Msa0059530:CDS | 40.0% |
| TTCACTCGCAATGCTAGATT+TGG | + | chr1_2:16455053-16455072 | None:intergenic | 40.0% | |
| TCTAGCATTGCGAGTGAAAA+TGG | - | chr1_2:16455055-16455074 | Msa0059530:CDS | 40.0% | |
| CAGGAAGAAGAACAAGTTTG+TGG | + | chr1_2:16455170-16455189 | None:intergenic | 40.0% | |
| ! | CAAACTTGTTCTTCTTCCTG+TGG | - | chr1_2:16455170-16455189 | Msa0059530:CDS | 40.0% |
| GTAATCGGAAAACTCATACG+TGG | + | chr1_2:16455480-16455499 | None:intergenic | 40.0% | |
| TACTTATCCACAGCGTTACT+AGG | + | chr1_2:16455548-16455567 | None:intergenic | 40.0% | |
| GCTCCAATATTCCAAGTTGT+GGG | + | chr1_2:16455628-16455647 | None:intergenic | 40.0% | |
| TTGTTACTCTCACATCCTTC+TGG | - | chr1_2:16455666-16455685 | Msa0059530:intron | 40.0% | |
| TGTTACTCTCACATCCTTCT+GGG | - | chr1_2:16455667-16455686 | Msa0059530:intron | 40.0% | |
| TATCTTACGACCGATGGAAT+AGG | - | chr1_2:16456021-16456040 | Msa0059530:CDS | 40.0% | |
| ATCTTACGACCGATGGAATA+GGG | - | chr1_2:16456022-16456041 | Msa0059530:CDS | 40.0% | |
| TCATAGTTGCCCTATTCCAT+CGG | + | chr1_2:16456034-16456053 | None:intergenic | 40.0% | |
| GGAATAGGGCAACTATGATA+TGG | - | chr1_2:16456036-16456055 | Msa0059530:CDS | 40.0% | |
| !! | ATCGATATTCAGAAGGCACT+AGG | - | chr1_2:16456252-16456271 | Msa0059530:CDS | 40.0% |
| TACTGTTACCACAGTGGTCT+GGG | + | chr1_2:16455238-16455257 | None:intergenic | 45.0% | |
| TGGTAACAGTACGTACGAGT+TGG | - | chr1_2:16455247-16455266 | Msa0059530:intron | 45.0% | |
| GAGAGAGAGGAGCAATTGTT+GGG | + | chr1_2:16455380-16455399 | None:intergenic | 45.0% | |
| AGAGAGAGAGGAGCAATTGT+TGG | + | chr1_2:16455381-16455400 | None:intergenic | 45.0% | |
| TTATCCACAGCGTTACTAGG+TGG | + | chr1_2:16455545-16455564 | None:intergenic | 45.0% | |
| TACGGATACCACTTCATGCA+TGG | - | chr1_2:16455571-16455590 | Msa0059530:intron | 45.0% | |
| ACGGATACCACTTCATGCAT+GGG | - | chr1_2:16455572-16455591 | Msa0059530:intron | 45.0% | |
| GGACCCACAACTTGGAATAT+TGG | - | chr1_2:16455622-16455641 | Msa0059530:intron | 45.0% | |
| GGCTCCAATATTCCAAGTTG+TGG | + | chr1_2:16455629-16455648 | None:intergenic | 45.0% | |
| ACAAGCTTAACACGGCATTG+AGG | + | chr1_2:16455650-16455669 | None:intergenic | 45.0% | |
| GTTACTCTCACATCCTTCTG+GGG | - | chr1_2:16455668-16455687 | Msa0059530:intron | 45.0% | |
| AATATGTGGATCTCCCCAGA+AGG | + | chr1_2:16455684-16455703 | None:intergenic | 45.0% | |
| !! | ATTCAGAAGGCACTAGGCTA+TGG | - | chr1_2:16456258-16456277 | Msa0059530:CDS | 45.0% |
| AACACTGAATCTCGCCAGTA+GGG | + | chr1_2:16456341-16456360 | None:intergenic | 45.0% | |
| TACTGTTACCACAGTGGTCT+GGG | + | chr1_2:16455238-16455257 | None:intergenic | 45.0% | |
| TGGTAACAGTACGTACGAGT+TGG | - | chr1_2:16455247-16455266 | Msa0059530:intron | 45.0% | |
| GAGAGAGAGGAGCAATTGTT+GGG | + | chr1_2:16455380-16455399 | None:intergenic | 45.0% | |
| AGAGAGAGAGGAGCAATTGT+TGG | + | chr1_2:16455381-16455400 | None:intergenic | 45.0% | |
| TTATCCACAGCGTTACTAGG+TGG | + | chr1_2:16455545-16455564 | None:intergenic | 45.0% | |
| TACGGATACCACTTCATGCA+TGG | - | chr1_2:16455571-16455590 | Msa0059530:intron | 45.0% | |
| ACGGATACCACTTCATGCAT+GGG | - | chr1_2:16455572-16455591 | Msa0059530:intron | 45.0% | |
| GGACCCACAACTTGGAATAT+TGG | - | chr1_2:16455622-16455641 | Msa0059530:intron | 45.0% | |
| GGCTCCAATATTCCAAGTTG+TGG | + | chr1_2:16455629-16455648 | None:intergenic | 45.0% | |
| ACAAGCTTAACACGGCATTG+AGG | + | chr1_2:16455650-16455669 | None:intergenic | 45.0% | |
| GTTACTCTCACATCCTTCTG+GGG | - | chr1_2:16455668-16455687 | Msa0059530:intron | 45.0% | |
| AATATGTGGATCTCCCCAGA+AGG | + | chr1_2:16455684-16455703 | None:intergenic | 45.0% | |
| !! | ATTCAGAAGGCACTAGGCTA+TGG | - | chr1_2:16456258-16456277 | Msa0059530:CDS | 45.0% |
| AACACTGAATCTCGCCAGTA+GGG | + | chr1_2:16456341-16456360 | None:intergenic | 45.0% | |
| !!! | ATAAATATTATTTCTTTTAT+AGG | - | chr1_2:16456216-16456235 | Msa0059530:CDS | 5.0% |
| !!! | ATAAATATTATTTCTTTTAT+AGG | - | chr1_2:16456216-16456235 | Msa0059530:CDS | 5.0% |
| AAACATGACCCAGACCACTG+TGG | - | chr1_2:16455227-16455246 | Msa0059530:intron | 50.0% | |
| GTACTGTTACCACAGTGGTC+TGG | + | chr1_2:16455239-16455258 | None:intergenic | 50.0% | |
| CGTACGTACTGTTACCACAG+TGG | + | chr1_2:16455244-16455263 | None:intergenic | 50.0% | |
| AAGTCCACCTAGTAACGCTG+TGG | - | chr1_2:16455538-16455557 | Msa0059530:intron | 50.0% | |
| ! | GTGTTGACCCATGCATGAAG+TGG | + | chr1_2:16455582-16455601 | None:intergenic | 50.0% |
| ATTGTTGGGGACCCACAACT+TGG | - | chr1_2:16455614-16455633 | Msa0059530:intron | 50.0% | |
| AGGACAAAAGGCTTGCATCC+AGG | + | chr1_2:16456295-16456314 | None:intergenic | 50.0% | |
| GAACACTGAATCTCGCCAGT+AGG | + | chr1_2:16456342-16456361 | None:intergenic | 50.0% | |
| GGTCTTACAGTAGTCGTCTC+TGG | + | chr1_2:16456364-16456383 | None:intergenic | 50.0% | |
| AAACATGACCCAGACCACTG+TGG | - | chr1_2:16455227-16455246 | Msa0059530:intron | 50.0% | |
| GTACTGTTACCACAGTGGTC+TGG | + | chr1_2:16455239-16455258 | None:intergenic | 50.0% | |
| CGTACGTACTGTTACCACAG+TGG | + | chr1_2:16455244-16455263 | None:intergenic | 50.0% | |
| AAGTCCACCTAGTAACGCTG+TGG | - | chr1_2:16455538-16455557 | Msa0059530:intron | 50.0% | |
| ! | GTGTTGACCCATGCATGAAG+TGG | + | chr1_2:16455582-16455601 | None:intergenic | 50.0% |
| ATTGTTGGGGACCCACAACT+TGG | - | chr1_2:16455614-16455633 | Msa0059530:intron | 50.0% | |
| AGGACAAAAGGCTTGCATCC+AGG | + | chr1_2:16456295-16456314 | None:intergenic | 50.0% | |
| GAACACTGAATCTCGCCAGT+AGG | + | chr1_2:16456342-16456361 | None:intergenic | 50.0% | |
| GGTCTTACAGTAGTCGTCTC+TGG | + | chr1_2:16456364-16456383 | None:intergenic | 50.0% | |
| TGCTACCTCAAGGACCCTAC+TGG | - | chr1_2:16456324-16456343 | Msa0059530:CDS | 55.0% | |
| TGCTACCTCAAGGACCCTAC+TGG | - | chr1_2:16456324-16456343 | Msa0059530:CDS | 55.0% | |
| TCTCGCCAGTAGGGTCCTTG+AGG | + | chr1_2:16456332-16456351 | None:intergenic | 60.0% | |
| TCTCGCCAGTAGGGTCCTTG+AGG | + | chr1_2:16456332-16456351 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 16455002 | 16456434 | 16455002 | ID=Msa0059530;Name=Msa0059530 |
| chr1_2 | mRNA | 16455002 | 16456434 | 16455002 | ID=Msa0059530-mRNA-1;Parent=Msa0059530;Name=Msa0059530-mRNA-1;_AED=0.02;_eAED=0.02;_QI=72|1|1|1|1|1|2|18|275 |
| chr1_2 | exon | 16455002 | 16455198 | 16455002 | ID=Msa0059530-mRNA-1:exon:6587;Parent=Msa0059530-mRNA-1 |
| chr1_2 | exon | 16455714 | 16456434 | 16455714 | ID=Msa0059530-mRNA-1:exon:6586;Parent=Msa0059530-mRNA-1 |
| chr1_2 | five_prime_UTR | 16456363 | 16456434 | 16456363 | ID=Msa0059530-mRNA-1:five_prime_utr;Parent=Msa0059530-mRNA-1 |
| chr1_2 | CDS | 16455714 | 16456362 | 16455714 | ID=Msa0059530-mRNA-1:cds;Parent=Msa0059530-mRNA-1 |
| chr1_2 | CDS | 16455020 | 16455198 | 16455020 | ID=Msa0059530-mRNA-1:cds;Parent=Msa0059530-mRNA-1 |
| chr1_2 | three_prime_UTR | 16455002 | 16455019 | 16455002 | ID=Msa0059530-mRNA-1:three_prime_utr;Parent=Msa0059530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
