AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0830900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830900 MtrunA17_Chr5g0396651 91.912 136 5 1 57 192 13 142 2.88e-84 245
Msa0830900 MtrunA17_Chr8g0388191 44.554 101 44 5 92 192 38 126 7.62e-16 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 40 sgRNAs with CRISPR-Local

Find 505 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAACATGATGTCATTT+TGG 0.200719 5_4:-3900020 Msa0830900:CDS
AATTATATTGATGAATTATT+AGG 0.223556 5_4:-3899947 Msa0830900:CDS
TCCTAACTGCCTTTCTTGTT+AGG 0.234019 5_4:+3900062 None:intergenic
ATTGCCTACCTCATCTTTGT+AGG 0.314350 5_4:+3900102 None:intergenic
CCTAACTGCCTTTCTTGTTA+GGG 0.331209 5_4:+3900063 None:intergenic
GCGTACCGGGGCGTAGGATC+TGG 0.409839 5_4:-3906623 Msa0830900:CDS
ATGGCGTATCTCTCTGACCT+TGG 0.414626 5_4:+3906648 Msa0830910:intron
GTTGGTTCAAGTTGATAGAA+TGG 0.448567 5_4:+3899769 None:intergenic
CCCTAACAAGAAAGGCAGTT+AGG 0.456411 5_4:-3900063 Msa0830900:CDS
TCAAAATTTAAATGCAAAGA+AGG 0.460513 5_4:-3899854 Msa0830900:CDS
AGAATGGTAACTCGGTCCAT+TGG 0.465675 5_4:+3899785 None:intergenic
CTAACTGCCTTTCTTGTTAG+GGG 0.467001 5_4:+3900064 None:intergenic
TGGCGTATCTCTCTGACCTT+GGG 0.467554 5_4:+3906649 Msa0830910:intron
GAATGGTAACTCGGTCCATT+GGG 0.488126 5_4:+3899786 None:intergenic
TGAGCTTGTGGCACTCCCAA+TGG 0.488217 5_4:-3899801 Msa0830900:CDS
AATTATTAGGAGAAAGAGAA+AGG 0.495743 5_4:-3899934 Msa0830900:CDS
CATATCTCCCCTAACAAGAA+AGG 0.502952 5_4:-3900071 Msa0830900:CDS
AGATACGCCATTAGCGTACC+GGG 0.520847 5_4:-3906636 Msa0830900:CDS
TTTGCTCAAACATGGCTCCA+TGG 0.534514 5_4:+3908221 Msa0830910:intron
TCAGAAGCAACATCTTTGAA+TGG 0.548770 5_4:+3899821 None:intergenic
GAAAAGGAGGAGTTGATGAA+AGG 0.556432 5_4:-3899989 Msa0830900:CDS
TTTGGAAAAGGATGAAAAGG+AGG 0.556727 5_4:-3900002 Msa0830900:CDS
AGGCAGTTAGGAAAAGTGTT+CGG 0.561991 5_4:-3900051 Msa0830900:CDS
AGATGTTGCTTCTGAGCTTG+TGG 0.567179 5_4:-3899813 Msa0830900:CDS
CCATTAGCGTACCGGGGCGT+AGG 0.567235 5_4:-3906629 Msa0830900:CDS
TGTGCAGGAAAATACAAGCA+AGG 0.571007 5_4:-3906743 Msa0830900:intron
CTTCATCACGCTAATAGCGT+AGG 0.575105 5_4:+3906677 Msa0830910:intron
GATGAATGTTACTAGAGTGA+AGG 0.581123 5_4:-3899912 Msa0830900:CDS
GAGATACGCCATTAGCGTAC+CGG 0.589870 5_4:-3906637 Msa0830900:CDS
AGCCATGTTTGAGCAAAAGC+AGG 0.594533 5_4:-3908215 Msa0830900:intron
GGCAATAACCTACAAAGATG+AGG 0.605269 5_4:-3900110 Msa0830900:CDS
AGCAAAATTCAAAGACACAA+AGG 0.611547 5_4:-3900131 Msa0830900:CDS
ATGAAAGGAAGAAGAAGCTG+TGG 0.613856 5_4:-3899974 Msa0830900:CDS
AGTGAAGGTAAAGATGACAA+AGG 0.626326 5_4:-3899897 Msa0830900:CDS
GTGCTCCAGATCCTACGCCC+CGG 0.646994 5_4:+3906618 Msa0830910:intron
ATAACCTACAAAGATGAGGT+AGG 0.652764 5_4:-3900106 Msa0830900:CDS
AAATTTAAATGCAAAGAAGG+AGG 0.657803 5_4:-3899851 Msa0830900:CDS
GCGTGATGAAGAAATGCCCA+AGG 0.665624 5_4:-3906665 Msa0830900:CDS
AAGTTGATAGAATGGTAACT+CGG 0.691380 5_4:+3899777 None:intergenic
GATACGCCATTAGCGTACCG+GGG 0.767662 5_4:-3906635 Msa0830900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATCTTTTAATATATA+AGG - chr5_4:3901951-3901970 Msa0830900:intron 10.0%
!!! TTTTTTTAATTAGTTTTGTA+AGG - chr5_4:3904992-3905011 Msa0830900:intron 10.0%
!! TTTCTTAAATAATTACTATA+TGG - chr5_4:3905243-3905262 Msa0830900:intron 10.0%
!!! TTTATTAGTCTTTAATATTT+TGG + chr5_4:3905668-3905687 Msa0830910:intron 10.0%
!! AAAAGATTCATTTATAATTA+AGG - chr5_4:3906043-3906062 Msa0830900:intron 10.0%
!! TAAGAAAAATGTATAAATTA+AGG - chr5_4:3906455-3906474 Msa0830900:intron 10.0%
!!! AATATTTTGATATTCTAATT+AGG - chr5_4:3906822-3906841 Msa0830900:intron 10.0%
!!! TTATGATATTGAATAATTTT+TGG + chr5_4:3907099-3907118 Msa0830910:intron 10.0%
!! ATATGTTAAATAATAAGTAT+TGG + chr5_4:3907165-3907184 Msa0830910:intron 10.0%
!! AATTATATTGATGAATTATT+AGG - chr5_4:3908047-3908066 Msa0830900:intron 10.0%
!! TCAAAACAAAAATAAACAAA+TGG + chr5_4:3900993-3901012 Msa0830910:intron 15.0%
!! AAAAGTGATATATTTCATAT+AGG - chr5_4:3901125-3901144 Msa0830900:intron 15.0%
!! AAATGTATAAAATGTTTCAA+TGG + chr5_4:3901727-3901746 Msa0830910:intron 15.0%
!! TGATTAAAAGTAATTATCAA+AGG + chr5_4:3902121-3902140 Msa0830910:intron 15.0%
!! AGAAATGATTGTAATAATAT+TGG - chr5_4:3902290-3902309 Msa0830900:intron 15.0%
!!! TGGTATTATTGATTATATTA+TGG - chr5_4:3904260-3904279 Msa0830900:intron 15.0%
!!! GGTATTATTGATTATATTAT+GGG - chr5_4:3904261-3904280 Msa0830900:intron 15.0%
!!! GATTTAAATTTTTTACTTTG+AGG + chr5_4:3904331-3904350 Msa0830910:intron 15.0%
!! AATATGGAATTTAAGTAAAA+AGG + chr5_4:3904516-3904535 Msa0830910:intron 15.0%
!! TTTGTGAATTTAATTGAATA+TGG + chr5_4:3904532-3904551 Msa0830910:intron 15.0%
!!! CATTTGTAAATTTGTTTATA+TGG + chr5_4:3904803-3904822 Msa0830910:intron 15.0%
!! TGTTAAACTTAAAAAAATTG+TGG + chr5_4:3904904-3904923 Msa0830910:intron 15.0%
!! ATTTGAATAATTAAAAAGGA+AGG + chr5_4:3905998-3906017 Msa0830910:intron 15.0%
!! TGACATTTGAATAATTAAAA+AGG + chr5_4:3906002-3906021 Msa0830910:intron 15.0%
!! ATTATGAAGTATATGATATA+AGG + chr5_4:3907675-3907694 Msa0830910:intron 15.0%
!! TATTAAAAACCTAGAATAAC+AGG + chr5_4:3899857-3899876 None:intergenic 20.0%
!! AAAAATAGAATAAGTTGTCA+AGG - chr5_4:3900514-3900533 Msa0830900:intron 20.0%
!! TATATTTCATATAGGAGTTT+AGG - chr5_4:3901133-3901152 Msa0830900:intron 20.0%
!! TGACATATTTACACAATAAT+TGG + chr5_4:3901200-3901219 Msa0830910:intron 20.0%
!!! AATCAAGATTTTAATGCTTT+CGG - chr5_4:3902136-3902155 Msa0830900:intron 20.0%
!!! CATCACAAGTATATTTTTAT+AGG - chr5_4:3902577-3902596 Msa0830900:intron 20.0%
!!! CTTAGATACATATTTAAGTT+CGG + chr5_4:3902676-3902695 Msa0830910:intron 20.0%
!!! AACATTGATTAAAACCAAAA+TGG - chr5_4:3902755-3902774 Msa0830900:intron 20.0%
!!! AAATTAAACATAGTCCATTT+TGG + chr5_4:3902772-3902791 Msa0830910:intron 20.0%
!!! TTTTTAGCAATTTCAAATGT+AGG + chr5_4:3903416-3903435 Msa0830910:intron 20.0%
!!! TTTTTTAGCAATTTCAAATG+TGG - chr5_4:3903415-3903434 Msa0830900:intron 20.0%
!!! TTTTTAGCAATTTCAAATGT+GGG - chr5_4:3903416-3903435 Msa0830900:intron 20.0%
!! AAATTTGAAAATTGCTCTTT+AGG - chr5_4:3903529-3903548 Msa0830900:intron 20.0%
!! AAACCAATTAAAAAAGTGAT+TGG - chr5_4:3903638-3903657 Msa0830900:intron 20.0%
!! TTGAATATTTAGCAATTAGA+GGG - chr5_4:3903741-3903760 Msa0830900:intron 20.0%
!! TTGTATTTGAATTACTTCTT+AGG - chr5_4:3903927-3903946 Msa0830900:intron 20.0%
!!! TATTTTTATCCACTTACAAA+AGG + chr5_4:3904074-3904093 Msa0830910:intron 20.0%
!!! TTCTTTAAAGCTTTCTTTTT+TGG - chr5_4:3904103-3904122 Msa0830900:intron 20.0%
!!! TTATTGATTATATTATGGGT+TGG - chr5_4:3904265-3904284 Msa0830900:intron 20.0%
!!! TATTGATTATATTATGGGTT+GGG - chr5_4:3904266-3904285 Msa0830900:intron 20.0%
!! AATTTAAATCACCTCAAAAA+CGG - chr5_4:3904341-3904360 Msa0830900:intron 20.0%
!!! AAATGAAATAAAGATTAGTC+CGG - chr5_4:3904818-3904837 Msa0830900:intron 20.0%
!! AACTTGTAAATTTACTTATG+TGG - chr5_4:3904848-3904867 Msa0830900:intron 20.0%
!!! TTTTAATTAGTTTTGTAAGG+AGG - chr5_4:3904995-3905014 Msa0830900:intron 20.0%
!! CTATAATTAATTCATAGTAC+TGG - chr5_4:3905150-3905169 Msa0830900:intron 20.0%
!!! TATGGTTTATTTACTTGTTA+CGG - chr5_4:3905261-3905280 Msa0830900:intron 20.0%
!! TTAGATCTAATTATAATGTG+TGG - chr5_4:3905594-3905613 Msa0830900:intron 20.0%
!! CTAATAAAAGTCAATGTATA+AGG - chr5_4:3905680-3905699 Msa0830900:intron 20.0%
!!! TGAAATGAGTCAATTATTTT+AGG - chr5_4:3906630-3906649 Msa0830900:CDS 20.0%
!! TTACAAAAGACTCAAAATTA+TGG - chr5_4:3906664-3906683 Msa0830900:CDS 20.0%
!! TACAAAAGACTCAAAATTAT+GGG - chr5_4:3906665-3906684 Msa0830900:CDS 20.0%
!! TAAGCATCAATTTACTATAT+TGG + chr5_4:3906800-3906819 Msa0830910:intron 20.0%
!!! TTGATTTGTAAAACCATTTT+TGG - chr5_4:3906942-3906961 Msa0830900:intron 20.0%
!!! TGATTTGTAAAACCATTTTT+GGG - chr5_4:3906943-3906962 Msa0830900:intron 20.0%
!!! TATCTTTTAAGTAAAAGTCT+GGG + chr5_4:3907324-3907343 Msa0830910:intron 20.0%
!!! TTATCTTTTAAGTAAAAGTC+TGG + chr5_4:3907325-3907344 Msa0830910:intron 20.0%
!! TCAAAATTTAAATGCAAAGA+AGG - chr5_4:3908140-3908159 Msa0830900:intron 20.0%
! CATTTATGTTAAGTACTAAG+TGG + chr5_4:3899952-3899971 None:intergenic 25.0%
! TAGTACTTAACATAAATGTG+AGG - chr5_4:3899954-3899973 Msa0830900:CDS 25.0%
! CATAACTAAAACAAGTTAGA+CGG + chr5_4:3900021-3900040 None:intergenic 25.0%
!! TTTTGAATTGTTTGAAAGCA+TGG - chr5_4:3900057-3900076 Msa0830900:CDS 25.0%
! ACAAAGTACAAAAAGGTTAA+GGG + chr5_4:3900315-3900334 None:intergenic 25.0%
!!! AGTTTTGTTGTATTCAAGTT+GGG - chr5_4:3900368-3900387 Msa0830900:intron 25.0%
!!! AAAGGTTGTAAATTTTGGTA+GGG - chr5_4:3900561-3900580 Msa0830900:intron 25.0%
! AAAAAATGTTCCTCTTTGAT+AGG - chr5_4:3900612-3900631 Msa0830900:intron 25.0%
! ACAAAAGAAATGTCATATGT+GGG + chr5_4:3900654-3900673 Msa0830910:intron 25.0%
! TACAAAAGAAATGTCATATG+TGG + chr5_4:3900655-3900674 Msa0830910:intron 25.0%
! TGATATGATAACAATAAGTG+AGG + chr5_4:3900803-3900822 Msa0830910:intron 25.0%
!!! TACTTTTAAAGAAGTGTGTT+AGG - chr5_4:3900830-3900849 Msa0830900:intron 25.0%
! AATTGAAAAGGAAACTAACA+AGG + chr5_4:3901051-3901070 Msa0830910:intron 25.0%
! CTCAAACAAATCAATTGAAA+AGG + chr5_4:3901063-3901082 Msa0830910:intron 25.0%
!!! CTTTTCAATTGATTTGTTTG+AGG - chr5_4:3901061-3901080 Msa0830900:intron 25.0%
!!! TTTTATACATTTCTAGAGAG+AGG - chr5_4:3901735-3901754 Msa0830900:intron 25.0%
! CAAAAGATTACATAATAGCT+TGG + chr5_4:3901936-3901955 Msa0830910:intron 25.0%
!!! CGTTTTTACTTTTATGTCAT+CGG - chr5_4:3902407-3902426 Msa0830900:intron 25.0%
! TTCACAATAGTTCACATTAA+GGG + chr5_4:3902470-3902489 Msa0830910:intron 25.0%
! TTTCACAATAGTTCACATTA+AGG + chr5_4:3902471-3902490 Msa0830910:intron 25.0%
! TACATAGTTATATGACATGT+AGG - chr5_4:3902545-3902564 Msa0830900:intron 25.0%
!!! AATGGACTATGTTTAATTTG+CGG - chr5_4:3902773-3902792 Msa0830900:intron 25.0%
!! CTTGAAGTTGAAATTTTATC+TGG - chr5_4:3902801-3902820 Msa0830900:intron 25.0%
!! TTGAAATTTTATCTGGTGTT+TGG - chr5_4:3902808-3902827 Msa0830900:intron 25.0%
!! TGAAATTTTATCTGGTGTTT+GGG - chr5_4:3902809-3902828 Msa0830900:intron 25.0%
! ACGACTAATATTATTTAGCA+AGG + chr5_4:3903234-3903253 Msa0830910:intron 25.0%
! AAATGTAGTTAACTACAGTT+CGG - chr5_4:3903265-3903284 Msa0830900:intron 25.0%
! TCGTCATATTATTACATTCA+CGG - chr5_4:3903473-3903492 Msa0830900:intron 25.0%
!!! AGTCCAATCACTTTTTTAAT+TGG + chr5_4:3903644-3903663 Msa0830910:intron 25.0%
! GTTGAATATTTAGCAATTAG+AGG - chr5_4:3903740-3903759 Msa0830900:intron 25.0%
!! TGCATGACAAAAAAATGTTT+TGG - chr5_4:3903959-3903978 Msa0830900:intron 25.0%
!!! ATGACAAAAAAATGTTTTGG+AGG - chr5_4:3903962-3903981 Msa0830900:intron 25.0%
! AAATAAAACATGGTTAGGAA+TGG + chr5_4:3904299-3904318 Msa0830910:intron 25.0%
! AAGACAAATAAAACATGGTT+AGG + chr5_4:3904304-3904323 Msa0830910:intron 25.0%
! GTTACAAGACAAATAAAACA+TGG + chr5_4:3904309-3904328 Msa0830910:intron 25.0%
!!! GTTTTCTATTTCTTTGTTCA+TGG + chr5_4:3904494-3904513 Msa0830910:intron 25.0%
!!! ATTCAGTAGCTTTAGATAAT+TGG - chr5_4:3904558-3904577 Msa0830900:intron 25.0%
!!! TTCAGTAGCTTTAGATAATT+GGG - chr5_4:3904559-3904578 Msa0830900:intron 25.0%
! ATAAACATGTAAAGTGTAGA+GGG - chr5_4:3904737-3904756 Msa0830900:intron 25.0%
!! AATGAAATAAAGATTAGTCC+GGG - chr5_4:3904819-3904838 Msa0830900:intron 25.0%
!!! AAAATGACTCTCTTTTTTAG+AGG + chr5_4:3904956-3904975 Msa0830910:CDS 25.0%
!!! TTGTTTTTGTTGTGAAAGTA+TGG + chr5_4:3905022-3905041 Msa0830910:intron 25.0%
! CTTTCACAACAAAAACAAAA+AGG - chr5_4:3905024-3905043 Msa0830900:intron 25.0%
! TATCTTCTTGAAATTCTAGA+AGG + chr5_4:3905221-3905240 Msa0830910:intron 25.0%
! TAATAATCATCCAATTGTGA+GGG + chr5_4:3905784-3905803 Msa0830910:intron 25.0%
! TTAATAATCATCCAATTGTG+AGG + chr5_4:3905785-3905804 Msa0830910:intron 25.0%
! CACAATTGGATGATTATTAA+AGG - chr5_4:3905785-3905804 Msa0830900:intron 25.0%
! ATGAAAAATGTTAGAACTGA+TGG + chr5_4:3905883-3905902 Msa0830910:intron 25.0%
!! TCTAACATTTTTCATCTCTT+AGG - chr5_4:3905888-3905907 Msa0830900:intron 25.0%
!! AAGTTGTGTCTTTTCATTTT+TGG - chr5_4:3905947-3905966 Msa0830900:intron 25.0%
! TAATTAAAAAGGAAGGTTTG+AGG + chr5_4:3905991-3906010 Msa0830910:intron 25.0%
! CAAACAAGTTCATTCAATTA+GGG + chr5_4:3906199-3906218 Msa0830910:intron 25.0%
! TCAAACAAGTTCATTCAATT+AGG + chr5_4:3906200-3906219 Msa0830910:intron 25.0%
! AAATTAAGGAGAGAGAAAAA+TGG - chr5_4:3906469-3906488 Msa0830900:intron 25.0%
!! GCAAATTAAGTTGTTTATTC+TGG - chr5_4:3906727-3906746 Msa0830900:CDS 25.0%
!! TTTTCAGTTTGTAGACTTTA+TGG - chr5_4:3906860-3906879 Msa0830900:intron 25.0%
! TTTCAGTTTGTAGACTTTAT+GGG - chr5_4:3906861-3906880 Msa0830900:intron 25.0%
! GAGAAAAAAAAGTTATGCTA+TGG + chr5_4:3907018-3907037 Msa0830910:intron 25.0%
!! TTATGGACAAAAGACTATTT+TGG + chr5_4:3907062-3907081 Msa0830910:intron 25.0%
!! AGTCTTTTGTCCATAAAAAA+TGG - chr5_4:3907066-3907085 Msa0830900:intron 25.0%
!!! TGGTCTTATACCATTTTTTA+TGG + chr5_4:3907079-3907098 Msa0830910:intron 25.0%
!!! TTTTGCATCTAAGATATGAT+CGG + chr5_4:3907290-3907309 Msa0830910:intron 25.0%
!!! ATCTTTTAAGTAAAAGTCTG+GGG + chr5_4:3907323-3907342 Msa0830910:intron 25.0%
! TTTGTCTACTTATAGATTCA+TGG + chr5_4:3907433-3907452 Msa0830910:intron 25.0%
! TATTGAGCAGAAAATAATTC+AGG - chr5_4:3907591-3907610 Msa0830900:intron 25.0%
!!! TGGTATTATTTTGGAAAGAT+TGG + chr5_4:3907776-3907795 Msa0830910:intron 25.0%
! CTTGTCTTGAATTTCTTAAT+AGG - chr5_4:3907817-3907836 Msa0830900:intron 25.0%
! AATTATTAGGAGAAAGAGAA+AGG - chr5_4:3908060-3908079 Msa0830900:intron 25.0%
! AAATTTAAATGCAAAGAAGG+AGG - chr5_4:3908143-3908162 Msa0830900:intron 25.0%
!! TATTGGTTTCCTGTTATTCT+AGG - chr5_4:3899845-3899864 Msa0830900:CDS 30.0%
TCAATCTGTTGTATATATGC+TGG - chr5_4:3899982-3900001 Msa0830900:CDS 30.0%
! AATTGTTTGAAAGCATGGAA+AGG - chr5_4:3900062-3900081 Msa0830900:CDS 30.0%
ATATTGACAGTTCATGTTTG+AGG + chr5_4:3900192-3900211 None:intergenic 30.0%
GACAAAGTACAAAAAGGTTA+AGG + chr5_4:3900316-3900335 None:intergenic 30.0%
!!! GAGTTTTGTTGTATTCAAGT+TGG - chr5_4:3900367-3900386 Msa0830900:intron 30.0%
!!! GTTTTGTTGTATTCAAGTTG+GGG - chr5_4:3900369-3900388 Msa0830900:intron 30.0%
TTCTTTGATTCAATGTTGTC+AGG + chr5_4:3900444-3900463 None:intergenic 30.0%
GTTTGATTGTTAATCACCAA+AGG - chr5_4:3900543-3900562 Msa0830900:intron 30.0%
! TCACCAAAGGTTGTAAATTT+TGG - chr5_4:3900556-3900575 Msa0830900:intron 30.0%
CTACCAAAATTTACAACCTT+TGG + chr5_4:3900562-3900581 Msa0830910:intron 30.0%
!! CAAAGGTTGTAAATTTTGGT+AGG - chr5_4:3900560-3900579 Msa0830900:intron 30.0%
!! AATTTTGGTAGGGAAGTATA+TGG - chr5_4:3900571-3900590 Msa0830900:intron 30.0%
CAAAAGAAATGTCATATGTG+GGG + chr5_4:3900653-3900672 Msa0830910:intron 30.0%
! TCTCAAAAAGCATAAAAGCA+TGG + chr5_4:3900715-3900734 Msa0830910:intron 30.0%
!!! ATGCTTTTTGAGACGATATT+TGG - chr5_4:3900722-3900741 Msa0830900:intron 30.0%
!!! TTTTTGAGACGATATTTGGA+TGG - chr5_4:3900726-3900745 Msa0830900:intron 30.0%
! GCTAACATCCTATTTAAGTT+AGG + chr5_4:3900755-3900774 Msa0830910:intron 30.0%
! ATGATGTATAGTTTGTGCTT+AGG - chr5_4:3900891-3900910 Msa0830900:intron 30.0%
! TTAGTTTGAATCTAGAGTAG+CGG - chr5_4:3900929-3900948 Msa0830900:intron 30.0%
!! TTGTTTTGCAAGATTCTCTA+TGG - chr5_4:3901168-3901187 Msa0830900:intron 30.0%
! TGTATTTTCCTGCACAAAAA+GGG + chr5_4:3901247-3901266 Msa0830910:intron 30.0%
! TTGTATTTTCCTGCACAAAA+AGG + chr5_4:3901248-3901267 Msa0830910:intron 30.0%
AAACACAAAGCAAGTGATTA+AGG - chr5_4:3901779-3901798 Msa0830900:intron 30.0%
TTGATGTCTCAATGAATCTA+GGG + chr5_4:3901816-3901835 Msa0830910:intron 30.0%
TAAACTAATGCAAGGAATGA+AGG + chr5_4:3901866-3901885 Msa0830910:intron 30.0%
TAGACATGTAAACTAATGCA+AGG + chr5_4:3901874-3901893 Msa0830910:intron 30.0%
TTACCTCAATACTACAAAGA+AGG + chr5_4:3901910-3901929 Msa0830910:intron 30.0%
CAAAGAGATTCAAGATGATT+TGG - chr5_4:3902023-3902042 Msa0830900:intron 30.0%
TAAACGATAACAAAGTCGAT+CGG + chr5_4:3902198-3902217 Msa0830910:intron 30.0%
! ATCGACTTTGTTATCGTTTA+AGG - chr5_4:3902198-3902217 Msa0830900:intron 30.0%
! TCGACTTTGTTATCGTTTAA+GGG - chr5_4:3902199-3902218 Msa0830900:intron 30.0%
TTGTTATCGTTTAAGGGATT+TGG - chr5_4:3902205-3902224 Msa0830900:intron 30.0%
GACATAAAAGTAAAAACGAG+AGG + chr5_4:3902405-3902424 Msa0830910:intron 30.0%
!! TTTTACTTTTATGTCATCGG+TGG - chr5_4:3902410-3902429 Msa0830900:intron 30.0%
AATAGTTCACATTAAGGGTT+TGG + chr5_4:3902465-3902484 Msa0830910:intron 30.0%
ATGTACACGTGAGTATATAT+AGG + chr5_4:3902530-3902549 Msa0830910:intron 30.0%
! GATACATATTTAAGTTCGGT+TGG + chr5_4:3902672-3902691 Msa0830910:intron 30.0%
AATCGATGAAAATGAGTGAA+AGG - chr5_4:3902938-3902957 Msa0830900:intron 30.0%
ATCGATGAAAATGAGTGAAA+GGG - chr5_4:3902939-3902958 Msa0830900:intron 30.0%
GTAACTTTCCCTTGTATATA+TGG + chr5_4:3903081-3903100 Msa0830910:intron 30.0%
TGATTGTAGTTAACTACAGT+TGG - chr5_4:3903385-3903404 Msa0830900:intron 30.0%
GATTGTAGTTAACTACAGTT+GGG - chr5_4:3903386-3903405 Msa0830900:intron 30.0%
GAAGAGTAACTTTCTATACA+AGG - chr5_4:3903438-3903457 Msa0830900:intron 30.0%
TTTCTATACAAGGACTCTTT+GGG - chr5_4:3903448-3903467 Msa0830900:intron 30.0%
TTACATGGGACTATTTACAT+CGG - chr5_4:3903613-3903632 Msa0830900:intron 30.0%
TTCAACTATTGTTAGTTGAG+CGG + chr5_4:3903726-3903745 Msa0830910:intron 30.0%
TGATCTTGAATTTGAGAGTT+AGG + chr5_4:3903815-3903834 Msa0830910:intron 30.0%
AACTCTCAAATTCAAGATCA+TGG - chr5_4:3903815-3903834 Msa0830900:intron 30.0%
! AGCACTTTTGTAATGATCTT+GGG + chr5_4:3903841-3903860 Msa0830910:intron 30.0%
! AAGCACTTTTGTAATGATCT+TGG + chr5_4:3903842-3903861 Msa0830910:intron 30.0%
ACTATTTCCAAAAACCAAAG+AGG - chr5_4:3903877-3903896 Msa0830900:intron 30.0%
!!! AATGAATCCTCTTTGGTTTT+TGG + chr5_4:3903887-3903906 Msa0830910:intron 30.0%
!! TAGCTTTAATGAATCCTCTT+TGG + chr5_4:3903894-3903913 Msa0830910:intron 30.0%
AAAGAGGATTCATTAAAGCT+AGG - chr5_4:3903893-3903912 Msa0830900:intron 30.0%
!!! AAAATGTTTTGGAGGCAATT+TGG - chr5_4:3903970-3903989 Msa0830900:intron 30.0%
! CTTTGAAGATAGACATAGAA+AGG - chr5_4:3903993-3904012 Msa0830900:intron 30.0%
! TTGATTCTACCTTTTGTAAG+TGG - chr5_4:3904062-3904081 Msa0830900:intron 30.0%
TTGTGCAGAAAAAAACAGAA+GGG + chr5_4:3904203-3904222 Msa0830910:intron 30.0%
!! ATCATTTACAACCGTTTTTG+AGG + chr5_4:3904355-3904374 Msa0830910:intron 30.0%
TTTCTTGAAGACTAAAAGGT+GGG + chr5_4:3904661-3904680 Msa0830910:intron 30.0%
! TTTTCTTGAAGACTAAAAGG+TGG + chr5_4:3904662-3904681 Msa0830910:intron 30.0%
!! ACCTTTTAGTCTTCAAGAAA+AGG - chr5_4:3904661-3904680 Msa0830900:intron 30.0%
! TCCTTTTCTTGAAGACTAAA+AGG + chr5_4:3904665-3904684 Msa0830910:intron 30.0%
CATAAACATGTAAAGTGTAG+AGG - chr5_4:3904736-3904755 Msa0830900:intron 30.0%
TAAACATGTAAAGTGTAGAG+GGG - chr5_4:3904738-3904757 Msa0830900:intron 30.0%
! ATGAAATAAAGATTAGTCCG+GGG - chr5_4:3904820-3904839 Msa0830900:intron 30.0%
!! AATTTACAAGTTGATATCCC+CGG + chr5_4:3904840-3904859 Msa0830910:intron 30.0%
!!! CTTATGTGGCTATTTTTTGT+TGG - chr5_4:3904862-3904881 Msa0830900:intron 30.0%
!! AAAAAGACTGTTCTAAGGTA+AGG + chr5_4:3904931-3904950 Msa0830910:CDS 30.0%
! TGAATGTGTTTGTCTTTTTG+TGG - chr5_4:3905054-3905073 Msa0830900:intron 30.0%
ATATTTCATCTGCAGGTTAA+TGG + chr5_4:3905710-3905729 Msa0830910:intron 30.0%
!! TTTTAATTCACCCTCACAAT+TGG - chr5_4:3905771-3905790 Msa0830900:intron 30.0%
!! TTGTGTCTTTTCATTTTTGG+CGG - chr5_4:3905950-3905969 Msa0830900:intron 30.0%
GGAATATATTGAATTGAGAG+TGG - chr5_4:3906547-3906566 Msa0830900:intron 30.0%
AAAGACTCAAAATTATGGGA+CGG - chr5_4:3906669-3906688 Msa0830900:CDS 30.0%
!! TGCGTTTGATTTGTTAAAGA+AGG - chr5_4:3906884-3906903 Msa0830900:intron 30.0%
!! TTGACTTTGAGACACAATAT+TGG + chr5_4:3907227-3907246 Msa0830910:intron 30.0%
! TTTTCTTGTAGTAGGACAAT+GGG - chr5_4:3907464-3907483 Msa0830900:intron 30.0%
! CTATTGATGGTTACATTACA+TGG + chr5_4:3907498-3907517 Msa0830910:intron 30.0%
GCTTAAAGCTTGACTAATAT+TGG - chr5_4:3907517-3907536 Msa0830900:intron 30.0%
! TGCTGATCATGGTATTATTT+TGG + chr5_4:3907785-3907804 Msa0830910:intron 30.0%
TTCAAGACAAGCAAACAATA+CGG + chr5_4:3907808-3907827 Msa0830910:intron 30.0%
AGCAAAATTCAAAGACACAA+AGG - chr5_4:3907863-3907882 Msa0830900:intron 30.0%
!! TTCAGAACATGATGTCATTT+TGG - chr5_4:3907974-3907993 Msa0830900:intron 30.0%
!!! ACATGATGTCATTTTGGAAA+AGG - chr5_4:3907980-3907999 Msa0830900:intron 30.0%
!! CATTTTGGAAAAGGATGAAA+AGG - chr5_4:3907989-3908008 Msa0830900:intron 30.0%
!! AAGTTGATAGAATGGTAACT+CGG + chr5_4:3908220-3908239 Msa0830910:intron 30.0%
! ATTACTTGTGAGAAAGCGTA+AGG - chr5_4:3899816-3899835 Msa0830900:CDS 35.0%
ATAACAGGAAACCAATACCT+TGG + chr5_4:3899842-3899861 None:intergenic 35.0%
ACAAGTTAGACGGTGATTAT+CGG + chr5_4:3900011-3900030 None:intergenic 35.0%
TGATTCATTAGGCTCAGATT+GGG + chr5_4:3900166-3900185 None:intergenic 35.0%
TTGATTCATTAGGCTCAGAT+TGG + chr5_4:3900167-3900186 None:intergenic 35.0%
GTTTGAGGACTTGATTCATT+AGG + chr5_4:3900177-3900196 None:intergenic 35.0%
!! TATTCAAGTTGGGGAGAAAA+AGG - chr5_4:3900378-3900397 Msa0830900:intron 35.0%
! ATGACATTTCTTTTGTAGCC+CGG - chr5_4:3900658-3900677 Msa0830900:intron 35.0%
! GCATAAAAGCATGGATCAAA+AGG + chr5_4:3900706-3900725 Msa0830910:intron 35.0%
GATGGACACCTAACTTAAAT+AGG - chr5_4:3900744-3900763 Msa0830900:intron 35.0%
TAGGATGTTAGCATGATTGT+TGG - chr5_4:3900763-3900782 Msa0830900:intron 35.0%
! TTAAAGAAGTGTGTTAGGTG+TGG - chr5_4:3900835-3900854 Msa0830900:intron 35.0%
! TTTGGACAAGGTTTTCAACA+TGG + chr5_4:3901027-3901046 Msa0830910:intron 35.0%
AAAGGAAACTAACAAGGCTT+TGG + chr5_4:3901045-3901064 Msa0830910:intron 35.0%
GACAAACAAAAAGCCAAGTT+GGG - chr5_4:3901083-3901102 Msa0830900:intron 35.0%
ACAAACAAAAAGCCAAGTTG+GGG - chr5_4:3901084-3901103 Msa0830900:intron 35.0%
TGCACAAAAAGGGTAGAATA+AGG + chr5_4:3901237-3901256 Msa0830910:intron 35.0%
! TTATTCTACCCTTTTTGTGC+AGG - chr5_4:3901236-3901255 Msa0830900:intron 35.0%
TAGCATTCTTACCTCTCTTT+AGG - chr5_4:3901689-3901708 Msa0830900:intron 35.0%
ATAGTGAATGACCTAAAGAG+AGG + chr5_4:3901703-3901722 Msa0830910:intron 35.0%
CTTGATGTCTCAATGAATCT+AGG + chr5_4:3901817-3901836 Msa0830910:intron 35.0%
CTAGATTCATTGAGACATCA+AGG - chr5_4:3901815-3901834 Msa0830900:intron 35.0%
TCACCTTCTTTGTAGTATTG+AGG - chr5_4:3901904-3901923 Msa0830900:intron 35.0%
ATGCTTTCGGATACTTAATC+AGG - chr5_4:3902149-3902168 Msa0830900:intron 35.0%
CGAATGTTTAAACGCTAACT+TGG - chr5_4:3902231-3902250 Msa0830900:intron 35.0%
ATAATTAACGTAACTCCCTG+TGG - chr5_4:3902497-3902516 Msa0830900:intron 35.0%
TATATAGGATCGTTTCCACA+GGG + chr5_4:3902515-3902534 Msa0830910:intron 35.0%
ATATATAGGATCGTTTCCAC+AGG + chr5_4:3902516-3902535 Msa0830910:intron 35.0%
! AGCATATCAATAGTTTGCAC+AGG - chr5_4:3902694-3902713 Msa0830900:intron 35.0%
AAAATGAGTGAAAGGGAAAG+AGG - chr5_4:3902946-3902965 Msa0830900:intron 35.0%
TCCAAACCACCATATATACA+AGG - chr5_4:3903069-3903088 Msa0830900:intron 35.0%
CCAAACCACCATATATACAA+GGG - chr5_4:3903070-3903089 Msa0830900:intron 35.0%
ACTTTCCCTTGTATATATGG+TGG + chr5_4:3903078-3903097 Msa0830910:intron 35.0%
AACGTATCCAACTGTAGTTA+AGG - chr5_4:3903127-3903146 Msa0830900:intron 35.0%
TATCCAACTGTAGTTAAGGT+GGG - chr5_4:3903131-3903150 Msa0830900:intron 35.0%
!! CTGTTGGACACTTTTTAAAG+CGG - chr5_4:3903310-3903329 Msa0830900:intron 35.0%
CTGTAGTTAACTACAATCAG+TGG + chr5_4:3903384-3903403 Msa0830910:intron 35.0%
CTTTCTATACAAGGACTCTT+TGG - chr5_4:3903447-3903466 Msa0830900:intron 35.0%
TTCCATATAGGATGCTTAGT+CGG + chr5_4:3903499-3903518 Msa0830910:intron 35.0%
ACTAAGCATCCTATATGGAA+AGG - chr5_4:3903499-3903518 Msa0830900:intron 35.0%
CTAAGCATCCTATATGGAAA+GGG - chr5_4:3903500-3903519 Msa0830900:intron 35.0%
TTCTTTGTCCCTTTCCATAT+AGG + chr5_4:3903511-3903530 Msa0830910:intron 35.0%
GATGTAAATAGTCCCATGTA+AGG + chr5_4:3903614-3903633 Msa0830910:intron 35.0%
TGTGCAGAAAAAAACAGAAG+GGG + chr5_4:3904202-3904221 Msa0830910:intron 35.0%
CTTGTGCAGAAAAAAACAGA+AGG + chr5_4:3904204-3904223 Msa0830910:intron 35.0%
TTGCTGAATTCAGTAGACTA+TGG - chr5_4:3904240-3904259 Msa0830900:intron 35.0%
CTTTCTTATCCAAGATCCAT+AGG - chr5_4:3904583-3904602 Msa0830900:intron 35.0%
TTATCCAAGATCCATAGGAT+TGG - chr5_4:3904588-3904607 Msa0830900:intron 35.0%
ATTATGCAACACCAATCCTA+TGG + chr5_4:3904602-3904621 Msa0830910:intron 35.0%
!!! GGCTATTTTTTGTTGGTTGT+TGG - chr5_4:3904869-3904888 Msa0830900:intron 35.0%
AGGACAAAAAGACTGTTCTA+AGG + chr5_4:3904936-3904955 Msa0830910:CDS 35.0%
! GCATAACGTGTCACTAAAAA+TGG + chr5_4:3905101-3905120 Msa0830910:intron 35.0%
ATGTATTTGATCGTAAGTCC+CGG + chr5_4:3905308-3905327 Msa0830910:intron 35.0%
GTGTTATGTTGTGTTAGTGT+CGG + chr5_4:3905340-3905359 Msa0830910:intron 35.0%
TGCAATTAAGTCTAGTGTGA+TGG + chr5_4:3905434-3905453 Msa0830910:intron 35.0%
TCACACTAGACTTAATTGCA+TGG - chr5_4:3905434-3905453 Msa0830900:intron 35.0%
! TGGCGAATGAATAAGTTGAA+CGG - chr5_4:3905454-3905473 Msa0830900:intron 35.0%
ACTCCATATAGTTATCGTGA+AGG + chr5_4:3905482-3905501 Msa0830910:intron 35.0%
GAGTATTAAGTTAACGCAAG+TGG - chr5_4:3905498-3905517 Msa0830900:intron 35.0%
! TAATGTGTGGTTAGCTCTTA+CGG - chr5_4:3905607-3905626 Msa0830900:intron 35.0%
GTCAATTCAATCTCTTCCTT+AGG - chr5_4:3905634-3905653 Msa0830900:intron 35.0%
AATCTCTTCCTTAGGATTAC+TGG - chr5_4:3905642-3905661 Msa0830900:intron 35.0%
!!! TATTTTGGCCAGTAATCCTA+AGG + chr5_4:3905653-3905672 Msa0830910:intron 35.0%
AAATCAATGCCGTACATAGA+GGG + chr5_4:3905820-3905839 Msa0830910:intron 35.0%
!!! ATTTTGGTGCCCATAAAAAG+TGG - chr5_4:3906157-3906176 Msa0830900:intron 35.0%
CAAGTTCATTCAATTAGGGT+GGG + chr5_4:3906195-3906214 Msa0830910:intron 35.0%
ACAAGTTCATTCAATTAGGG+TGG + chr5_4:3906196-3906215 Msa0830910:intron 35.0%
AGCAAATGACTCACTTAATC+CGG + chr5_4:3906421-3906440 Msa0830910:intron 35.0%
!!! GTGCTTTTGTTAAGTATCGA+TGG - chr5_4:3906498-3906517 Msa0830900:intron 35.0%
CCACTTTGCATTTATGATAG+TGG + chr5_4:3906529-3906548 Msa0830910:intron 35.0%
CCACTATCATAAATGCAAAG+TGG - chr5_4:3906526-3906545 Msa0830900:intron 35.0%
ACGTTGACATGTGAGATAAA+TGG + chr5_4:3906761-3906780 Msa0830910:intron 35.0%
!!! TGTAAAACCATTTTTGGGAC+AGG - chr5_4:3906948-3906967 Msa0830900:intron 35.0%
GTTATGCTATGGTTTAGTGA+AGG + chr5_4:3907007-3907026 Msa0830910:intron 35.0%
TGTGAAACCAATTGCAAACA+GGG + chr5_4:3907196-3907215 Msa0830910:intron 35.0%
TTGTGAAACCAATTGCAAAC+AGG + chr5_4:3907197-3907216 Msa0830910:intron 35.0%
! GACACAAGTTTTCTTGTAGT+AGG - chr5_4:3907456-3907475 Msa0830900:intron 35.0%
! GTTTTCTTGTAGTAGGACAA+TGG - chr5_4:3907463-3907482 Msa0830900:intron 35.0%
TTTCTTGTAGTAGGACAATG+GGG - chr5_4:3907465-3907484 Msa0830900:intron 35.0%
!! GTCAAGCTTTAAGCTATTGA+TGG + chr5_4:3907511-3907530 Msa0830910:intron 35.0%
GCATATGATCGATATGTCTA+GGG + chr5_4:3907648-3907667 Msa0830910:intron 35.0%
AGCATATGATCGATATGTCT+AGG + chr5_4:3907649-3907668 Msa0830910:intron 35.0%
AAGAAGGGTGAGGAAAAATA+TGG + chr5_4:3907726-3907745 Msa0830910:intron 35.0%
GGTACTAGAAGAAAAGAAGT+GGG + chr5_4:3907755-3907774 Msa0830910:intron 35.0%
TGGTACTAGAAGAAAAGAAG+TGG + chr5_4:3907756-3907775 Msa0830910:intron 35.0%
ATAACCTACAAAGATGAGGT+AGG - chr5_4:3907888-3907907 Msa0830900:intron 35.0%
TTTGGAAAAGGATGAAAAGG+AGG - chr5_4:3907992-3908011 Msa0830900:intron 35.0%
GATGAATGTTACTAGAGTGA+AGG - chr5_4:3908082-3908101 Msa0830900:intron 35.0%
AGTGAAGGTAAAGATGACAA+AGG - chr5_4:3908097-3908116 Msa0830900:intron 35.0%
TCAGAAGCAACATCTTTGAA+TGG + chr5_4:3908176-3908195 Msa0830910:intron 35.0%
! TGAAAGCATGGAAAGGATCA+AGG - chr5_4:3900069-3900088 Msa0830900:CDS 40.0%
! TAGGCTTTATGTGGTCAAGT+AGG + chr5_4:3900116-3900135 None:intergenic 40.0%
GATTCATTAGGCTCAGATTG+GGG + chr5_4:3900165-3900184 None:intergenic 40.0%
TTTCAGAGACAAGCATGAAC+TGG + chr5_4:3900261-3900280 None:intergenic 40.0%
AGTTCATGCTTGTCTCTGAA+AGG - chr5_4:3900260-3900279 Msa0830900:intron 40.0%
GCAAGGGACAAAGTACAAAA+AGG + chr5_4:3900322-3900341 None:intergenic 40.0%
TTGAATGTTCCCCTATCCTA+AGG + chr5_4:3900344-3900363 None:intergenic 40.0%
GATCAGAAAGCCTATCAAAG+AGG + chr5_4:3900625-3900644 Msa0830910:intron 40.0%
GTCTTGCAAGGGTTATAACT+TGG + chr5_4:3900684-3900703 Msa0830910:intron 40.0%
TGGATCAAAAGGTCTTGCAA+GGG + chr5_4:3900695-3900714 Msa0830910:intron 40.0%
ATGGATCAAAAGGTCTTGCA+AGG + chr5_4:3900696-3900715 Msa0830910:intron 40.0%
GTGATTCAAATAAGATCGCG+TGG + chr5_4:3900971-3900990 Msa0830910:intron 40.0%
!! AACTAACAAGGCTTTGGACA+AGG + chr5_4:3901039-3901058 Msa0830910:intron 40.0%
GGACAAACAAAAAGCCAAGT+TGG - chr5_4:3901082-3901101 Msa0830900:intron 40.0%
TTATCAAACTCTCCCCAACT+TGG + chr5_4:3901099-3901118 Msa0830910:intron 40.0%
TGTGCAGGAAAATACAAGCA+AGG - chr5_4:3901251-3901270 Msa0830900:intron 40.0%
GAAGAAACACGCTATTAGTG+TGG - chr5_4:3901491-3901510 Msa0830900:intron 40.0%
GTAATCTACGCTATTAGCGT+AGG - chr5_4:3901642-3901661 Msa0830900:intron 40.0%
TAGCGTAGGTACAAAAACAC+AGG - chr5_4:3901656-3901675 Msa0830900:intron 40.0%
CATTGAGACATCAAGGATCT+TGG - chr5_4:3901822-3901841 Msa0830900:intron 40.0%
TTTCGGATACTTAATCAGGC+TGG - chr5_4:3902153-3902172 Msa0830900:intron 40.0%
ATACTTAATCAGGCTGGACA+CGG - chr5_4:3902159-3902178 Msa0830900:intron 40.0%
! TGGAAATAACGATGTCGCTT+TGG - chr5_4:3902251-3902270 Msa0830900:intron 40.0%
AGATCGAACTATTTCGCTTG+CGG + chr5_4:3902382-3902401 Msa0830910:intron 40.0%
! GGTCTAGAGTTCTTCTAACT+AGG + chr5_4:3902622-3902641 Msa0830910:intron 40.0%
TCTAGACCTGAACTCTTTCA+AGG - chr5_4:3902634-3902653 Msa0830900:intron 40.0%
GAAAGAGGAGGAATGAATAC+CGG - chr5_4:3902961-3902980 Msa0830900:intron 40.0%
AAAGAGGAGGAATGAATACC+GGG - chr5_4:3902962-3902981 Msa0830900:intron 40.0%
CCCTTGTATATATGGTGGTT+TGG + chr5_4:3903073-3903092 Msa0830910:intron 40.0%
GTATCCAACTGTAGTTAAGG+TGG - chr5_4:3903130-3903149 Msa0830900:intron 40.0%
! AAGGGGGAAAAAGAGTACAA+AGG + chr5_4:3903185-3903204 Msa0830910:intron 40.0%
CAACAGTGATTAACTACCAC+TGG + chr5_4:3903296-3903315 Msa0830910:intron 40.0%
CAGTGGTAGTTAATCACTGT+TGG - chr5_4:3903294-3903313 Msa0830900:intron 40.0%
!! AATTGCTCTTTAGGCATCGA+TGG - chr5_4:3903538-3903557 Msa0830900:intron 40.0%
ACCGACAAAAATACTCCTAG+CGG - chr5_4:3903578-3903597 Msa0830900:intron 40.0%
GGCCATTAACTACCTTACAT+GGG - chr5_4:3903599-3903618 Msa0830900:intron 40.0%
GTCCCATGTAAGGTAGTTAA+TGG + chr5_4:3903604-3903623 Msa0830910:intron 40.0%
AAAAACAGAAGGGGAGACAA+GGG + chr5_4:3904193-3904212 Msa0830910:intron 40.0%
AAAAAACAGAAGGGGAGACA+AGG + chr5_4:3904194-3904213 Msa0830910:intron 40.0%
AACACCAATCCTATGGATCT+TGG + chr5_4:3904595-3904614 Msa0830910:intron 40.0%
TACTGGTATTCTAGTCGTCT+TGG - chr5_4:3905167-3905186 Msa0830900:intron 40.0%
ACTGGTATTCTAGTCGTCTT+GGG - chr5_4:3905168-3905187 Msa0830900:intron 40.0%
!! ATTAGTATCGACACCAATGC+CGG - chr5_4:3905286-3905305 Msa0830900:intron 40.0%
! GGCGAATGAATAAGTTGAAC+GGG - chr5_4:3905455-3905474 Msa0830900:intron 40.0%
GGTCCTTCACGATAACTATA+TGG - chr5_4:3905476-3905495 Msa0830900:intron 40.0%
CACACAGTGTAAGATTTACG+TGG - chr5_4:3905550-3905569 Msa0830900:intron 40.0%
GTAAGATTTACGTGGAATGC+AGG - chr5_4:3905558-3905577 Msa0830900:intron 40.0%
AGGGTCAATATTTCATCTGC+AGG + chr5_4:3905717-3905736 Msa0830910:intron 40.0%
CTCTAACTACCCTCTATGTA+CGG - chr5_4:3905808-3905827 Msa0830900:intron 40.0%
CAAATCAATGCCGTACATAG+AGG + chr5_4:3905821-3905840 Msa0830910:intron 40.0%
!!! TTTTCATTTTTGGCGGTTGC+TGG - chr5_4:3905957-3905976 Msa0830900:intron 40.0%
!!! TTTCATTTTTGGCGGTTGCT+GGG - chr5_4:3905958-3905977 Msa0830900:intron 40.0%
!!! CCTAGGACACCACTTTTTAT+GGG + chr5_4:3906169-3906188 Msa0830910:intron 40.0%
!!! ACCTAGGACACCACTTTTTA+TGG + chr5_4:3906170-3906189 Msa0830910:intron 40.0%
GCAAATGACTCACTTAATCC+GGG + chr5_4:3906420-3906439 Msa0830910:intron 40.0%
ACTCAAAATTATGGGACGGA+GGG - chr5_4:3906673-3906692 Msa0830900:CDS 40.0%
GATTTGTCCTGTCCCAAAAA+TGG + chr5_4:3906958-3906977 Msa0830910:intron 40.0%
AAACACACCCTGTTTGCAAT+TGG - chr5_4:3907186-3907205 Msa0830900:intron 40.0%
TTCTTGTAGTAGGACAATGG+GGG - chr5_4:3907466-3907485 Msa0830900:intron 40.0%
! TTTTCTCTTCCTTGACGCAT+AGG - chr5_4:3907556-3907575 Msa0830900:intron 40.0%
ATTAAGTGACCTATGCGTCA+AGG + chr5_4:3907568-3907587 Msa0830910:intron 40.0%
TATGATCGATATGTCTAGGG+TGG + chr5_4:3907645-3907664 Msa0830910:intron 40.0%
AGAAGTGGGAAGGAAAAGAA+GGG + chr5_4:3907741-3907760 Msa0830910:intron 40.0%
AAGAAGTGGGAAGGAAAAGA+AGG + chr5_4:3907742-3907761 Msa0830910:intron 40.0%
CTAGAAGAAAAGAAGTGGGA+AGG + chr5_4:3907751-3907770 Msa0830910:intron 40.0%
!! AAACAATACGGTGCTGATCA+TGG + chr5_4:3907796-3907815 Msa0830910:intron 40.0%
GGCAATAACCTACAAAGATG+AGG - chr5_4:3907884-3907903 Msa0830900:intron 40.0%
ATTGCCTACCTCATCTTTGT+AGG + chr5_4:3907895-3907914 Msa0830910:intron 40.0%
CATATCTCCCCTAACAAGAA+AGG - chr5_4:3907923-3907942 Msa0830900:intron 40.0%
CTAACTGCCTTTCTTGTTAG+GGG + chr5_4:3907933-3907952 Msa0830910:intron 40.0%
CCTAACTGCCTTTCTTGTTA+GGG + chr5_4:3907934-3907953 Msa0830910:intron 40.0%
TCCTAACTGCCTTTCTTGTT+AGG + chr5_4:3907935-3907954 Msa0830910:intron 40.0%
!! AGGCAGTTAGGAAAAGTGTT+CGG - chr5_4:3907943-3907962 Msa0830900:intron 40.0%
!! GAAAAGGAGGAGTTGATGAA+AGG - chr5_4:3908005-3908024 Msa0830900:intron 40.0%
ATGAAAGGAAGAAGAAGCTG+TGG - chr5_4:3908020-3908039 Msa0830900:intron 40.0%
AGCCATGTTTGAGCAAAAGC+AGG - chr5_4:3899779-3899798 Msa0830900:CDS 45.0%
!! CACCTGCTTTTGCTCAAACA+TGG + chr5_4:3899784-3899803 None:intergenic 45.0%
AAAGCGTAAGGCCAAGGTAT+TGG - chr5_4:3899828-3899847 Msa0830900:CDS 45.0%
! TCTCACAGGTAGGCTTTATG+TGG + chr5_4:3900125-3900144 None:intergenic 45.0%
TGTACTTTGTCCCTTGCCTT+AGG - chr5_4:3900325-3900344 Msa0830900:intron 45.0%
TTTGTCCCTTGCCTTAGGAT+AGG - chr5_4:3900330-3900349 Msa0830900:intron 45.0%
TTGTCCCTTGCCTTAGGATA+GGG - chr5_4:3900331-3900350 Msa0830900:intron 45.0%
!! TCAAGTTGGGGAGAAAAAGG+AGG - chr5_4:3900381-3900400 Msa0830900:intron 45.0%
TGCAAGGGTTATAACTTGGC+CGG + chr5_4:3900680-3900699 Msa0830910:intron 45.0%
! GTTTGAATCTAGAGTAGCGG+AGG - chr5_4:3900932-3900951 Msa0830900:intron 45.0%
CTTCATCACGCTAATAGCGT+AGG + chr5_4:3901320-3901339 Msa0830910:intron 45.0%
TATAAGCGTAGAAGCTCCAG+AGG - chr5_4:3901521-3901540 Msa0830900:intron 45.0%
AAGCCCATTGGCCAGATTAT+AGG - chr5_4:3901598-3901617 Msa0830900:intron 45.0%
TGGTATGTCGGCCTATAATC+TGG + chr5_4:3901612-3901631 Msa0830910:intron 45.0%
ACGCTAATAGCGTGGTATGT+CGG + chr5_4:3901624-3901643 Msa0830910:intron 45.0%
CGTAGATTACGCTAATAGCG+TGG + chr5_4:3901632-3901651 Msa0830910:intron 45.0%
AGACATCAAGGATCTTGGCA+TGG - chr5_4:3901827-3901846 Msa0830900:intron 45.0%
GAGAGACCTTGAAAGAGTTC+AGG + chr5_4:3902643-3902662 Msa0830910:intron 45.0%
ATGAGTGAAAGGGAAAGAGG+AGG - chr5_4:3902949-3902968 Msa0830900:intron 45.0%
AAGAGGAGGAATGAATACCG+GGG - chr5_4:3902963-3902982 Msa0830900:intron 45.0%
GTAGTTAAGGTGGGCAGTTA+AGG - chr5_4:3903140-3903159 Msa0830900:intron 45.0%
! TACTCTTTTTCCCCCTTTGC+AGG - chr5_4:3903188-3903207 Msa0830900:intron 45.0%
! AGAAGCACAAAGCCTGCAAA+GGG + chr5_4:3903203-3903222 Msa0830910:intron 45.0%
! AAGAAGCACAAAGCCTGCAA+AGG + chr5_4:3903204-3903223 Msa0830910:intron 45.0%
!!! GCCGCTAGGAGTATTTTTGT+CGG + chr5_4:3903582-3903601 Msa0830910:intron 45.0%
TAAGGTAGTTAATGGCCGCT+AGG + chr5_4:3903596-3903615 Msa0830910:intron 45.0%
CGGCCATTAACTACCTTACA+TGG - chr5_4:3903598-3903617 Msa0830900:intron 45.0%
GAATTCAGCAATCCTCTGTC+AGG + chr5_4:3904231-3904250 Msa0830910:intron 45.0%
!! TTAGTATCGACACCAATGCC+GGG - chr5_4:3905287-3905306 Msa0830900:intron 45.0%
! GTGATGGCATAGCTACTTTG+AGG + chr5_4:3905418-3905437 Msa0830910:intron 45.0%
TACGTGGAATGCAGGATTAC+TGG - chr5_4:3905566-3905585 Msa0830900:intron 45.0%
TCTCACTTGTGGGGTTGAAA+GGG + chr5_4:3905736-3905755 Msa0830910:intron 45.0%
ATCTCACTTGTGGGGTTGAA+AGG + chr5_4:3905737-3905756 Msa0830910:intron 45.0%
TTGCCATCGATCTCACTTGT+GGG + chr5_4:3905746-3905765 Msa0830910:intron 45.0%
TTTGCCATCGATCTCACTTG+TGG + chr5_4:3905747-3905766 Msa0830910:intron 45.0%
!!! TTCATTTTTGGCGGTTGCTG+GGG - chr5_4:3905959-3905978 Msa0830900:intron 45.0%
CCCATAAAAAGTGGTGTCCT+AGG - chr5_4:3906166-3906185 Msa0830900:intron 45.0%
AAACATTACTCCCTCAGTCC+CGG - chr5_4:3906399-3906418 Msa0830900:intron 45.0%
GACTCAAAATTATGGGACGG+AGG - chr5_4:3906672-3906691 Msa0830900:CDS 45.0%
! TTTGGGACAGGACAAATCAG+AGG - chr5_4:3906960-3906979 Msa0830900:intron 45.0%
TCTTGTAGTAGGACAATGGG+GGG - chr5_4:3907467-3907486 Msa0830900:intron 45.0%
CCCTAACAAGAAAGGCAGTT+AGG - chr5_4:3907931-3907950 Msa0830900:intron 45.0%
! AGATGTTGCTTCTGAGCTTG+TGG - chr5_4:3908181-3908200 Msa0830900:intron 45.0%
GAATGGTAACTCGGTCCATT+GGG + chr5_4:3908211-3908230 Msa0830910:intron 45.0%
AGAATGGTAACTCGGTCCAT+TGG + chr5_4:3908212-3908231 Msa0830910:intron 45.0%
!!! ATAATTAAAAATCATAATTT+TGG - chr5_4:3906141-3906160 Msa0830900:intron 5.0%
! TGTGAGAAAGCGTAAGGCCA+AGG - chr5_4:3899822-3899841 Msa0830900:CDS 50.0%
TACTCGCTCTTCTCACAGGT+AGG + chr5_4:3900135-3900154 None:intergenic 50.0%
CAGATACTCGCTCTTCTCAC+AGG + chr5_4:3900139-3900158 None:intergenic 50.0%
TGTCCCTTGCCTTAGGATAG+GGG - chr5_4:3900332-3900351 Msa0830900:intron 50.0%
GTTCCCCTATCCTAAGGCAA+GGG + chr5_4:3900338-3900357 None:intergenic 50.0%
TGTTCCCCTATCCTAAGGCA+AGG + chr5_4:3900339-3900358 None:intergenic 50.0%
GCAAGGGTTATAACTTGGCC+GGG + chr5_4:3900679-3900698 Msa0830910:intron 50.0%
GCGTGATGAAGAAATGCCCA+AGG - chr5_4:3901329-3901348 Msa0830900:intron 50.0%
TGGCGTATCTCTCTGACCTT+GGG + chr5_4:3901348-3901367 Msa0830910:intron 50.0%
ATGGCGTATCTCTCTGACCT+TGG + chr5_4:3901349-3901368 Msa0830910:intron 50.0%
GAGATACGCCATTAGCGTAC+CGG - chr5_4:3901357-3901376 Msa0830900:intron 50.0%
AGATACGCCATTAGCGTACC+GGG - chr5_4:3901358-3901377 Msa0830900:intron 50.0%
CTTCAGCTACGCTAATAGCG+TGG + chr5_4:3901548-3901567 Msa0830910:intron 50.0%
GTAGCTGAAGCGTAGAAGCA+GGG - chr5_4:3901558-3901577 Msa0830900:intron 50.0%
CGGCCTATAATCTGGCCAAT+GGG + chr5_4:3901604-3901623 Msa0830910:intron 50.0%
TCGGCCTATAATCTGGCCAA+TGG + chr5_4:3901605-3901624 Msa0830910:intron 50.0%
TGGTGTTTGGGAAAGCGATG+TGG - chr5_4:3902821-3902840 Msa0830900:intron 50.0%
AGAGGAGGAATGAATACCGG+GGG - chr5_4:3902964-3902983 Msa0830900:intron 50.0%
GAATGAATACCGGGGGGATT+GGG - chr5_4:3902971-3902990 Msa0830900:intron 50.0%
CTGTTGGGGAATTTGATGCG+AGG - chr5_4:3902998-3903017 Msa0830900:intron 50.0%
AGTTGAGCAGTTCCACCCAA+GGG - chr5_4:3903039-3903058 Msa0830900:intron 50.0%
GGTTTGGACATGAGACCCTT+GGG + chr5_4:3903057-3903076 Msa0830910:intron 50.0%
! TGGTTTGGACATGAGACCCT+TGG + chr5_4:3903058-3903077 Msa0830910:intron 50.0%
CTGCCCACCTTAACTACAGT+TGG + chr5_4:3903137-3903156 Msa0830910:intron 50.0%
AAGCACAAAGCCTGCAAAGG+GGG + chr5_4:3903201-3903220 Msa0830910:intron 50.0%
GAAGCACAAAGCCTGCAAAG+GGG + chr5_4:3903202-3903221 Msa0830910:intron 50.0%
! CTACAGTTCGGCTTTTCCAG+TGG - chr5_4:3903277-3903296 Msa0830900:intron 50.0%
GGCCGACTAAGCATCCTATA+TGG - chr5_4:3903494-3903513 Msa0830900:intron 50.0%
!!! TGCCGTTTTGTGACGAACGA+CGG - chr5_4:3903693-3903712 Msa0830900:intron 50.0%
AGCCGTCGTTCGTCACAAAA+CGG + chr5_4:3903698-3903717 Msa0830910:intron 50.0%
TGCACAAGAAGTCCTGACAG+AGG - chr5_4:3904216-3904235 Msa0830900:intron 50.0%
TTGATCGTAAGTCCCGGCAT+TGG + chr5_4:3905302-3905321 Msa0830910:intron 50.0%
AACCCCACAAGTGAGATCGA+TGG - chr5_4:3905740-3905759 Msa0830900:intron 50.0%
TGCCATCGATCTCACTTGTG+GGG + chr5_4:3905745-3905764 Msa0830910:intron 50.0%
CTCACTTAATCCGGGACTGA+GGG + chr5_4:3906412-3906431 Msa0830910:intron 50.0%
ACTCACTTAATCCGGGACTG+AGG + chr5_4:3906413-3906432 Msa0830910:intron 50.0%
! ATCGATATGTCTAGGGTGGC+GGG + chr5_4:3907641-3907660 Msa0830910:intron 50.0%
! GATCGATATGTCTAGGGTGG+CGG + chr5_4:3907642-3907661 Msa0830910:intron 50.0%
TGGGAAGGAAAAGAAGGGTG+AGG + chr5_4:3907736-3907755 Msa0830910:intron 50.0%
GATACGCCATTAGCGTACCG+GGG - chr5_4:3901359-3901378 Msa0830900:intron 55.0%
ACGCTAATAGCGTGGTCCTC+TGG + chr5_4:3901540-3901559 Msa0830910:intron 55.0%
CGTAGCTGAAGCGTAGAAGC+AGG - chr5_4:3901557-3901576 Msa0830900:intron 55.0%
TGAAGCGTAGAAGCAGGGCA+AGG - chr5_4:3901563-3901582 Msa0830900:intron 55.0%
!! CGATGTCGCTTTGGACACGA+AGG - chr5_4:3902260-3902279 Msa0830900:intron 55.0%
GAGGAGGAATGAATACCGGG+GGG - chr5_4:3902965-3902984 Msa0830900:intron 55.0%
GGAATGAATACCGGGGGGAT+TGG - chr5_4:3902970-3902989 Msa0830900:intron 55.0%
AACAGACATCCCAATCCCCC+CGG + chr5_4:3902983-3903002 Msa0830910:intron 55.0%
GGGGGATTGGGATGTCTGTT+GGG - chr5_4:3902983-3903002 Msa0830900:intron 55.0%
GGGGATTGGGATGTCTGTTG+GGG - chr5_4:3902984-3903003 Msa0830900:intron 55.0%
GAGTTGAGCAGTTCCACCCA+AGG - chr5_4:3903038-3903057 Msa0830900:intron 55.0%
TTGGACATGAGACCCTTGGG+TGG + chr5_4:3903054-3903073 Msa0830910:intron 55.0%
GGACACTGTCTAGTCAAGCG+AGG + chr5_4:3904640-3904659 Msa0830910:intron 55.0%
TCAATTAGGGTGGGCGACCT+AGG + chr5_4:3906186-3906205 Msa0830910:intron 55.0%
TGTAGTAGGACAATGGGGGG+AGG - chr5_4:3907470-3907489 Msa0830900:intron 55.0%
GTAGTAGGACAATGGGGGGA+GGG - chr5_4:3907471-3907490 Msa0830900:intron 55.0%
! TCGATATGTCTAGGGTGGCG+GGG + chr5_4:3907640-3907659 Msa0830910:intron 55.0%
TGAGCTTGTGGCACTCCCAA+TGG - chr5_4:3908193-3908212 Msa0830900:intron 55.0%
TGCGCCTATGGCGTAGCTCT+CGG + chr5_4:3901452-3901471 Msa0830910:intron 60.0%
CTTCATGACAGCCACGCTCC+AGG + chr5_4:3901475-3901494 Msa0830910:intron 60.0%
! CCAATGGGCTTGTGCCACGT+TGG + chr5_4:3901589-3901608 Msa0830910:intron 60.0%
CCAACGTGGCACAAGCCCAT+TGG - chr5_4:3901586-3901605 Msa0830900:intron 60.0%
GGGGGGATTGGGATGTCTGT+TGG - chr5_4:3902982-3903001 Msa0830900:intron 60.0%
CCTACGCCCCGGTACGCTAA+TGG + chr5_4:3901368-3901387 Msa0830910:intron 65.0%
CCATTAGCGTACCGGGGCGT+AGG - chr5_4:3901365-3901384 Msa0830900:intron 65.0%
GTGCTCCAGATCCTACGCCC+CGG + chr5_4:3901379-3901398 Msa0830910:intron 65.0%
GCTCCCGAGAGCTACGCCAT+AGG - chr5_4:3901445-3901464 Msa0830900:intron 65.0%
GCGCCTATGGCGTAGCTCTC+GGG + chr5_4:3901451-3901470 Msa0830910:intron 65.0%
AGCTACGCCATAGGCGCACC+TGG - chr5_4:3901454-3901473 Msa0830900:intron 65.0%
GAAGCAGGGCAAGGCCAACG+TGG - chr5_4:3901572-3901591 Msa0830900:intron 65.0%
TGGCGGGGCACAAAGGGTCA+TGG + chr5_4:3907625-3907644 Msa0830910:intron 65.0%
!! CTAGGGTGGCGGGGCACAAA+GGG + chr5_4:3907631-3907650 Msa0830910:intron 65.0%
!! TCTAGGGTGGCGGGGCACAA+AGG + chr5_4:3907632-3907651 Msa0830910:intron 65.0%
GCGTACCGGGGCGTAGGATC+TGG - chr5_4:3901371-3901390 Msa0830900:intron 70.0%
CCACGCTCCAGGTGCGCCTA+TGG + chr5_4:3901464-3901483 Msa0830910:intron 70.0%
CCATAGGCGCACCTGGAGCG+TGG - chr5_4:3901461-3901480 Msa0830900:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 3899775 3908241 3899775 ID=Msa0830900;Name=Msa0830900
chr5_4 mRNA 3899775 3908241 3899775 ID=Msa0830900-mRNA-1;Parent=Msa0830900;Name=Msa0830900-mRNA-1;_AED=0.20;_eAED=0.22;_QI=0|0|0|0.33|1|1|3|0|192
chr5_4 exon 3908216 3908241 3908216 ID=Msa0830900-mRNA-1:exon:1575;Parent=Msa0830900-mRNA-1
chr5_4 exon 3906609 3906758 3906609 ID=Msa0830900-mRNA-1:exon:1574;Parent=Msa0830900-mRNA-1
chr5_4 exon 3899775 3900177 3899775 ID=Msa0830900-mRNA-1:exon:1573;Parent=Msa0830900-mRNA-1
chr5_4 CDS 3908216 3908241 3908216 ID=Msa0830900-mRNA-1:cds;Parent=Msa0830900-mRNA-1
chr5_4 CDS 3906609 3906758 3906609 ID=Msa0830900-mRNA-1:cds;Parent=Msa0830900-mRNA-1
chr5_4 CDS 3899775 3900177 3899775 ID=Msa0830900-mRNA-1:cds;Parent=Msa0830900-mRNA-1
Gene Sequence

>Msa0830900

ATGGAGCCATGTTTGAGCAAAAGCAGGAAAATACAAGCAAGGATCAAGAAACGTCAAAGTTCAATGTCATACGCTATTAGCGTGTCCTACGCTATTAGCGTGATGAAGAAATGCCCAAGGTCAGAGAGATACGCCATTAGCGTACCGGGGCGTAGGATCTGGAGCACTCTTGAAGAGAAAATATCATATGAAAAATTAGCAGCAAAATTCAAAGACACAAAGGCAATAACCTACAAAGATGAGGTAGGCAATAAAAAGATCATATCTCCCCTAACAAGAAAGGCAGTTAGGAAAAGTGTTCGGTTCGCAGATTCAGAACATGATGTCATTTTGGAAAAGGATGAAAAGGAGGAGTTGATGAAAGGAAGAAGAAGCTGTGGTAGTAATTATATTGATGAATTATTAGGAGAAAGAGAAAGGATGAATGTTACTAGAGTGAAGGTAAAGATGACAAAGGAAGAAGCAGCTAAGTTACTGTCAAAATTTAAATGCAAAGAAGGAGGAGTTCTTCCATTCAAAGATGTTGCTTCTGAGCTTGTGGCACTCCCAATGGACCGAGTTACCATTCTATCAACTTGA

Protein sequence

>Msa0830900

MEPCLSKSRKIQARIKKRQSSMSYAISVSYAISVMKKCPRSERYAISVPGRRIWSTLEEKISYEKLAAKFKDTKAITYKDEVGNKKIISPLTRKAVRKSVRFADSEHDVILEKDEKEELMKGRRSCGSNYIDELLGERERMNVTRVKVKMTKEEAAKLLSKFKCKEGGVLPFKDVASELVALPMDRVTILST*