AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080470 MtrunA17_Chr7g0266831 95.912 318 7 1 1 318 19 330 0.0 625
Msa1080470 MtrunA17_Chr7g0266851 76.415 318 74 1 1 318 1 317 0.0 511
Msa1080470 MtrunA17_Chr4g0054411 54.887 266 115 3 53 318 55 315 2.01e-99 302
Msa1080470 MtrunA17_Chr2g0320581 49.186 307 134 5 12 302 7 307 2.74e-92 283
Msa1080470 MtrunA17_Chr2g0315161 45.455 297 147 5 11 304 9 293 1.97e-77 244
Msa1080470 MtrunA17_Chr5g0405091 34.286 245 132 9 49 284 29 253 5.50e-24 102
Msa1080470 MtrunA17_Chr7g0216291 52.381 63 29 1 115 177 1 62 5.38e-16 72.0
Msa1080470 MtrunA17_Chr8g0372201 38.710 93 51 2 171 263 17 103 4.74e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080470 AT2G24280.2 57.249 269 109 2 53 321 46 308 4.04e-108 322
Msa1080470 AT2G24280.1 57.249 269 109 2 53 321 46 308 1.84e-107 322
Msa1080470 AT5G65760.1 51.266 316 144 5 10 318 8 320 6.26e-106 319
Msa1080470 AT5G22860.8 42.623 305 163 4 11 306 3 304 6.86e-74 232
Msa1080470 AT5G22860.2 42.623 305 163 4 11 306 3 304 5.74e-73 232
Msa1080470 AT5G22860.3 42.623 305 163 4 11 306 3 304 5.74e-73 232
Msa1080470 AT5G22860.4 42.623 305 163 4 11 306 3 304 1.38e-72 232
Msa1080470 AT5G22860.1 42.623 305 163 4 11 306 3 304 2.21e-72 232
Msa1080470 AT5G22860.7 42.623 305 163 4 11 306 3 304 3.77e-72 231
Msa1080470 AT5G22860.5 42.623 305 163 4 11 306 3 304 3.77e-72 231
Msa1080470 AT5G22860.6 42.623 305 163 4 11 306 3 304 3.77e-72 231
Msa1080470 AT4G36190.1 34.884 258 126 12 12 256 9 237 2.20e-27 112
Msa1080470 AT4G36195.3 33.333 258 130 12 12 256 9 237 4.42e-24 102
Msa1080470 AT4G36195.1 33.333 258 130 12 12 256 9 237 4.42e-24 102
Msa1080470 AT4G36195.2 33.333 258 130 12 12 256 9 237 4.48e-24 102
Msa1080470 AT2G18080.1 33.043 230 120 9 43 256 27 238 6.23e-22 96.3
Msa1080470 AT3G28680.1 37.273 110 69 0 187 296 16 125 2.23e-20 87.8

Find 87 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCATCAATGATACTTAT+TGG 0.188484 7_2:-79957345 Msa1080470:CDS
AAGGAAATCTTGGTATGATA+TGG 0.230704 7_2:+79957503 None:intergenic
AATCCTCCAATTTGATGATT+TGG 0.239788 7_2:-79956020 Msa1080470:CDS
CAGTGCTGGCTGCTTGGTTC+AGG 0.250869 7_2:-79956090 Msa1080470:CDS
AATTGTTACAAAGTGATAAA+AGG 0.254500 7_2:-79955563 Msa1080470:CDS
TTCCTTTCTGATGAAAGTTT+AGG 0.260668 7_2:+79957606 None:intergenic
TTGTTCTGTAAAGACCATTT+TGG 0.261483 7_2:+79957437 None:intergenic
AAGAAAATTGATAGAATAAA+AGG 0.261681 7_2:+79957821 None:intergenic
TCCTTTCTGATGAAAGTTTA+GGG 0.280672 7_2:+79957607 None:intergenic
TAATGAGATAAATAAATAAA+TGG 0.282507 7_2:+79957870 None:intergenic
GTGAAACCAAATCATCAAAT+TGG 0.282781 7_2:+79956014 None:intergenic
AAAGGAAGAAAATACTAAAA+AGG 0.299245 7_2:+79957839 None:intergenic
GCTCCAATCTTTGTCTATAC+TGG 0.308765 7_2:-79957304 Msa1080470:CDS
TCTCATCAATGATACTTATT+GGG 0.310905 7_2:-79957344 Msa1080470:CDS
TCTGGACTAATCACTGAATA+AGG 0.312552 7_2:+79957484 None:intergenic
ACCTAATTTCAATGCCCTTT+TGG 0.323357 7_2:-79957224 Msa1080470:CDS
GAGTCTCCTGTTGTTGTGTT+TGG 0.334751 7_2:-79956755 Msa1080470:CDS
ACCAAAAGGGCATTGAAATT+AGG 0.336847 7_2:+79957223 None:intergenic
ACATCATCGCACAAGACTTC+AGG 0.338451 7_2:-79955976 Msa1080470:CDS
GAAATGCAGCATAGATTCTA+TGG 0.341720 7_2:-79956914 Msa1080470:intron
TCTTAGTTCTGCGCAGGCTT+TGG 0.362504 7_2:-79956828 Msa1080470:CDS
TATGGAAAATCAATTCCATT+TGG 0.368192 7_2:-79956896 Msa1080470:CDS
TTTCCAGTATAGACAAAGAT+TGG 0.369258 7_2:+79957301 None:intergenic
AGATAAAGTATTAATTTAAG+AGG 0.376681 7_2:+79955223 None:intergenic
AAGGTTGGCTTGGCCAGGCT+TGG 0.380999 7_2:-79955334 Msa1080470:CDS
AACTCTGGTTCTGTCCAAAA+TGG 0.383245 7_2:-79957451 Msa1080470:CDS
ATCACTGAATAAGGAAATCT+TGG 0.384231 7_2:+79957493 None:intergenic
TTTGGAAGGTTGGCTTGGCC+AGG 0.388060 7_2:-79955339 Msa1080470:CDS
TCTGCTAGTGACAGAAGAAA+TGG 0.410316 7_2:+79957715 None:intergenic
TGGTAAGGGACTCAGGAAAT+TGG 0.411109 7_2:+79955277 None:intergenic
ACCTTCTTCTTGCCTCCAAA+TGG 0.418708 7_2:+79956881 None:intergenic
AGTATTAATTTAAGAGGGTA+TGG 0.419459 7_2:+79955229 None:intergenic
CCAGAGTTTAGTTGTTGCTC+TGG 0.429402 7_2:+79957466 None:intergenic
GGTGTAAGTAGTAATTATAT+AGG 0.442779 7_2:-79955371 Msa1080470:intron
AAATCATCAAATTGGAGGAT+TGG 0.447064 7_2:+79956022 None:intergenic
CTCAGGAAATTGGTTGGTGT+TGG 0.449100 7_2:+79955287 None:intergenic
TTATATAGGAGTAGATGCTT+TGG 0.450963 7_2:-79955357 Msa1080470:CDS
ACCTTTCTCACTGGATATGC+TGG 0.461939 7_2:+79955257 None:intergenic
TCTCCTGTTGTTGTGTTTGG+AGG 0.462578 7_2:-79956752 Msa1080470:CDS
GATCCTCCAAACACAACAAC+AGG 0.470076 7_2:+79956749 None:intergenic
ATGGTTTGAACCTTTCTCAC+TGG 0.470177 7_2:+79955248 None:intergenic
GATATGCTGGTAAGGGACTC+AGG 0.470517 7_2:+79955270 None:intergenic
AAGTATCCACATGTTGCAAT+TGG 0.472771 7_2:-79956064 Msa1080470:CDS
TCTCACTGGATATGCTGGTA+AGG 0.477430 7_2:+79955262 None:intergenic
ATTGTTACAAAGTGATAAAA+GGG 0.477547 7_2:-79955562 Msa1080470:CDS
AGGAAATCTTGGTATGATAT+GGG 0.479572 7_2:+79957504 None:intergenic
CTTTGTCTATACTGGAAATG+AGG 0.480451 7_2:-79957296 Msa1080470:CDS
ACCCTAAACTTTCATCAGAA+AGG 0.484436 7_2:-79957608 Msa1080470:five_prime_UTR
GGAAAATCAATTCCATTTGG+AGG 0.485037 7_2:-79956893 Msa1080470:CDS
GATAAAGTATTAATTTAAGA+GGG 0.492995 7_2:+79955224 None:intergenic
AAAAGAGTAAAACTTTGTAA+TGG 0.493497 7_2:+79957563 None:intergenic
GTTGTGTTTGGAGGATCCTA+TGG 0.495589 7_2:-79956743 Msa1080470:CDS
GAGTAGATGCTTTGGAAGGT+TGG 0.497704 7_2:-79955349 Msa1080470:CDS
TCCATTTGGAGGCAAGAAGA+AGG 0.501288 7_2:-79956882 Msa1080470:CDS
GATGCTTTGGAAGGTTGGCT+TGG 0.508325 7_2:-79955344 Msa1080470:CDS
GAAATTTCTGATAACTCTGA+GGG 0.516593 7_2:+79957377 None:intergenic
CATCATCGCACAAGACTTCA+GGG 0.517088 7_2:-79955975 Msa1080470:intron
TTTGTCTATACTGGAAATGA+GGG 0.520268 7_2:-79957295 Msa1080470:CDS
ATGGAGGACTAGAATTACTA+AGG 0.522910 7_2:-79955505 Msa1080470:CDS
ATAGATTATACTTCCTCCAT+AGG 0.525664 7_2:+79956727 None:intergenic
ACCAGCATATCCAGTGAGAA+AGG 0.530550 7_2:-79955258 Msa1080470:CDS
AAACCAAATCATCAAATTGG+AGG 0.542286 7_2:+79956017 None:intergenic
CTGCTAGTGACAGAAGAAAT+GGG 0.544166 7_2:+79957716 None:intergenic
TGGATATCTTAGTTCTGCGC+AGG 0.548174 7_2:-79956834 Msa1080470:CDS
ATGATGTTGTCGAAGGCATA+TGG 0.554309 7_2:+79955992 None:intergenic
TGGCTGTATAAATCCAAGCC+TGG 0.559236 7_2:+79955321 None:intergenic
GTTATCAGAAATTTCAACAA+AGG 0.559968 7_2:-79957369 Msa1080470:CDS
CTTGAGGTCAATGATAAGAG+TGG 0.564228 7_2:+79956796 None:intergenic
CTCACTGGATATGCTGGTAA+GGG 0.566602 7_2:+79955263 None:intergenic
ACAAAGTGATAAAAGGGTCA+TGG 0.573085 7_2:-79955556 Msa1080470:CDS
TGAAATTTCTGATAACTCTG+AGG 0.578502 7_2:+79957376 None:intergenic
CTCATCAATGATACTTATTG+GGG 0.580416 7_2:-79957343 Msa1080470:CDS
TATGCAAATAGCAGTACACT+TGG 0.581795 7_2:-79956854 Msa1080470:CDS
TATGATATGGGAAGAAGAGA+AGG 0.582255 7_2:+79957516 None:intergenic
ATAGGAGTAGATGCTTTGGA+AGG 0.585541 7_2:-79955353 Msa1080470:CDS
CCAGAGCAACAACTAAACTC+TGG 0.600523 7_2:-79957466 Msa1080470:CDS
CACTAGCAGACCCAACCACT+AGG 0.602648 7_2:-79957702 Msa1080470:five_prime_UTR
ATCAATGATACTTATTGGGG+CGG 0.603361 7_2:-79957340 Msa1080470:CDS
TGGTGTTGGATAATCTGTCA+TGG 0.604159 7_2:+79955301 None:intergenic
AAAGCTCCAATTGCAACATG+TGG 0.604536 7_2:+79956058 None:intergenic
TGACAGAAGAAATGGGATTG+TGG 0.615253 7_2:+79957723 None:intergenic
AAGGGACTCAGGAAATTGGT+TGG 0.616341 7_2:+79955281 None:intergenic
GAAATGAGGGGAACATAGAG+TGG 0.635112 7_2:-79957282 Msa1080470:CDS
GAGTGGTTTACACAAAACAC+AGG 0.637316 7_2:-79957265 Msa1080470:CDS
TTGTGCGATGATGTTGTCGA+AGG 0.661986 7_2:+79955985 None:intergenic
GTGTTTGGAGGATCCTATGG+AGG 0.677662 7_2:-79956740 Msa1080470:CDS
TTGTCTATACTGGAAATGAG+GGG 0.711014 7_2:-79957294 Msa1080470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGAGATAAATAAATAAA+TGG + chr7_2:79955270-79955289 None:intergenic 10.0%
!! ATATAAGAAAAATTAAAGAA+TGG - chr7_2:79955390-79955409 Msa1080470:intron 10.0%
!! TGAATTATATATTATATGTA+TGG - chr7_2:79956167-79956186 Msa1080470:intron 10.0%
!!! AAAATGAAATAAAATTTTGA+TGG + chr7_2:79956437-79956456 None:intergenic 10.0%
!!! AATCAAGATTTTTTAAATTA+TGG - chr7_2:79956493-79956512 Msa1080470:intron 10.0%
!!! TCTTAATTCTAAAAAATTAA+AGG - chr7_2:79957249-79957268 Msa1080470:CDS 10.0%
!! AAGAAAATTGATAGAATAAA+AGG + chr7_2:79955319-79955338 None:intergenic 15.0%
!!! TTATTTTCTTAAAAATACCA+AGG + chr7_2:79956537-79956556 None:intergenic 15.0%
!! AAAGGAAGAAAATACTAAAA+AGG + chr7_2:79955301-79955320 None:intergenic 20.0%
!! AAAAGAGTAAAACTTTGTAA+TGG + chr7_2:79955577-79955596 None:intergenic 20.0%
!!! GTTAAAACGCAATTTTTTAA+AGG + chr7_2:79956718-79956737 None:intergenic 20.0%
!!! TAAAAAATTGCGTTTTAACA+TGG - chr7_2:79956719-79956738 Msa1080470:intron 20.0%
!!! TATAAAAATGGTTTTCAGTT+AGG + chr7_2:79957202-79957221 None:intergenic 20.0%
!! AAAAAATATAGCTATTTGTC+AGG + chr7_2:79957508-79957527 None:intergenic 20.0%
!! AATTGTTACAAAGTGATAAA+AGG - chr7_2:79957574-79957593 Msa1080470:CDS 20.0%
!! ATTGTTACAAAGTGATAAAA+GGG - chr7_2:79957575-79957594 Msa1080470:CDS 20.0%
! TTTCATCAGAAAGGAAAAAA+TGG - chr7_2:79955538-79955557 Msa1080470:CDS 25.0%
! GTTATCAGAAATTTCAACAA+AGG - chr7_2:79955768-79955787 Msa1080470:intron 25.0%
! ATCTCATCAATGATACTTAT+TGG - chr7_2:79955792-79955811 Msa1080470:intron 25.0%
! TCTCATCAATGATACTTATT+GGG - chr7_2:79955793-79955812 Msa1080470:intron 25.0%
! TACCTCAATAAAAACCAAAA+GGG + chr7_2:79955930-79955949 None:intergenic 25.0%
! TTACCTCAATAAAAACCAAA+AGG + chr7_2:79955931-79955950 None:intergenic 25.0%
! TGAGGTAAACTTTATTATCT+TGG - chr7_2:79955943-79955962 Msa1080470:intron 25.0%
! TGTCAAATCGCATTTATTTA+AGG + chr7_2:79956060-79956079 None:intergenic 25.0%
! TATGGAAAATCAATTCCATT+TGG - chr7_2:79956241-79956260 Msa1080470:intron 25.0%
!!! GTAATCTAGCTTTAAATGAT+TGG + chr7_2:79956602-79956621 None:intergenic 25.0%
!!! ATGCATTCATTTTTTAGTGT+TGG - chr7_2:79956658-79956677 Msa1080470:intron 25.0%
! TTTACCCATAACAAAAAGTT+AGG + chr7_2:79956686-79956705 None:intergenic 25.0%
! ATCGTATTACAATTGTGTTA+AGG - chr7_2:79956869-79956888 Msa1080470:CDS 25.0%
! TTTATTCCTTAACAAATGTC+TGG - chr7_2:79956963-79956982 Msa1080470:intron 25.0%
! ACAAATTTCACTTTAGACTA+TGG + chr7_2:79957022-79957041 None:intergenic 25.0%
! AATTTAACAACCAAATCATC+AGG - chr7_2:79957707-79957726 Msa1080470:five_prime_UTR 25.0%
! GGTGTAAGTAGTAATTATAT+AGG - chr7_2:79957766-79957785 Msa1080470:five_prime_UTR 25.0%
TCCTTTCTGATGAAAGTTTA+GGG + chr7_2:79955533-79955552 None:intergenic 30.0%
TTCCTTTCTGATGAAAGTTT+AGG + chr7_2:79955534-79955553 None:intergenic 30.0%
AGGAAATCTTGGTATGATAT+GGG + chr7_2:79955636-79955655 None:intergenic 30.0%
AAGGAAATCTTGGTATGATA+TGG + chr7_2:79955637-79955656 None:intergenic 30.0%
ATCACTGAATAAGGAAATCT+TGG + chr7_2:79955647-79955666 None:intergenic 30.0%
! TTGTTCTGTAAAGACCATTT+TGG + chr7_2:79955703-79955722 None:intergenic 30.0%
GAAATTTCTGATAACTCTGA+GGG + chr7_2:79955763-79955782 None:intergenic 30.0%
TGAAATTTCTGATAACTCTG+AGG + chr7_2:79955764-79955783 None:intergenic 30.0%
CTCATCAATGATACTTATTG+GGG - chr7_2:79955794-79955813 Msa1080470:intron 30.0%
! AAAGATTGGAGCTTTCTTTT+TGG + chr7_2:79955825-79955844 None:intergenic 30.0%
TTTCCAGTATAGACAAAGAT+TGG + chr7_2:79955839-79955858 None:intergenic 30.0%
TTTGTCTATACTGGAAATGA+GGG - chr7_2:79955842-79955861 Msa1080470:intron 30.0%
! TTGCTGACAAATTTTTCTTG+AGG + chr7_2:79956360-79956379 None:intergenic 30.0%
ATAGATTATACTTCCTCCAT+AGG + chr7_2:79956413-79956432 None:intergenic 30.0%
! TGGTACCTAACTTTTTGTTA+TGG - chr7_2:79956678-79956697 Msa1080470:intron 30.0%
!! GGTACCTAACTTTTTGTTAT+GGG - chr7_2:79956679-79956698 Msa1080470:intron 30.0%
ATATTCTTGATGAGACATCA+AGG + chr7_2:79956823-79956842 None:intergenic 30.0%
TTGATGTCTCATCAAGAATA+TGG - chr7_2:79956822-79956841 Msa1080470:CDS 30.0%
! CAATATCCAGACATTTGTTA+AGG + chr7_2:79956972-79956991 None:intergenic 30.0%
CTTAACAAATGTCTGGATAT+TGG - chr7_2:79956970-79956989 Msa1080470:intron 30.0%
!!! AGCATTTTTTCTCCCTAATT+TGG - chr7_2:79956995-79957014 Msa1080470:intron 30.0%
TTAGACTATGGTCCAAATTA+GGG + chr7_2:79957010-79957029 None:intergenic 30.0%
TTTAGACTATGGTCCAAATT+AGG + chr7_2:79957011-79957030 None:intergenic 30.0%
AAATCATCAAATTGGAGGAT+TGG + chr7_2:79957118-79957137 None:intergenic 30.0%
! AATCCTCCAATTTGATGATT+TGG - chr7_2:79957117-79957136 Msa1080470:intron 30.0%
AAACCAAATCATCAAATTGG+AGG + chr7_2:79957123-79957142 None:intergenic 30.0%
GTGAAACCAAATCATCAAAT+TGG + chr7_2:79957126-79957145 None:intergenic 30.0%
ATGAGAAAGTAGTGTTAAAG+AGG - chr7_2:79957301-79957320 Msa1080470:CDS 30.0%
TTATATAGGAGTAGATGCTT+TGG - chr7_2:79957780-79957799 Msa1080470:five_prime_UTR 30.0%
!!! GTGAGAATTTTGAGATCAGT+AGG + chr7_2:79955344-79955363 None:intergenic 35.0%
ACCCTAAACTTTCATCAGAA+AGG - chr7_2:79955529-79955548 Msa1080470:CDS 35.0%
TATGATATGGGAAGAAGAGA+AGG + chr7_2:79955624-79955643 None:intergenic 35.0%
TCTGGACTAATCACTGAATA+AGG + chr7_2:79955656-79955675 None:intergenic 35.0%
ATCAATGATACTTATTGGGG+CGG - chr7_2:79955797-79955816 Msa1080470:intron 35.0%
CTTTGTCTATACTGGAAATG+AGG - chr7_2:79955841-79955860 Msa1080470:intron 35.0%
TTGTCTATACTGGAAATGAG+GGG - chr7_2:79955843-79955862 Msa1080470:intron 35.0%
! ACCTAATTTCAATGCCCTTT+TGG - chr7_2:79955913-79955932 Msa1080470:intron 35.0%
!! ACCAAAAGGGCATTGAAATT+AGG + chr7_2:79955917-79955936 None:intergenic 35.0%
!!! TGCCCTTTTGGTTTTTATTG+AGG - chr7_2:79955925-79955944 Msa1080470:intron 35.0%
GAAATGCAGCATAGATTCTA+TGG - chr7_2:79956223-79956242 Msa1080470:intron 35.0%
GGAAAATCAATTCCATTTGG+AGG - chr7_2:79956244-79956263 Msa1080470:intron 35.0%
TATGCAAATAGCAGTACACT+TGG - chr7_2:79956283-79956302 Msa1080470:intron 35.0%
CCACAATGCAATTGCAATTA+AGG + chr7_2:79956754-79956773 None:intergenic 35.0%
CCTTAATTGCAATTGCATTG+TGG - chr7_2:79956751-79956770 Msa1080470:CDS 35.0%
!!! GAAATTTGTTTTTGCAGTGC+TGG - chr7_2:79957033-79957052 Msa1080470:intron 35.0%
AAGTATCCACATGTTGCAAT+TGG - chr7_2:79957073-79957092 Msa1080470:intron 35.0%
ACAAAGTGATAAAAGGGTCA+TGG - chr7_2:79957581-79957600 Msa1080470:CDS 35.0%
!!! TTCTAGTCCTCCATGTTTTT+TGG + chr7_2:79957626-79957645 None:intergenic 35.0%
ATGGAGGACTAGAATTACTA+AGG - chr7_2:79957632-79957651 Msa1080470:five_prime_UTR 35.0%
! GTTGTTGTTACCTGATGATT+TGG + chr7_2:79957720-79957739 None:intergenic 35.0%
TGACAGAAGAAATGGGATTG+TGG + chr7_2:79955417-79955436 None:intergenic 40.0%
CTGCTAGTGACAGAAGAAAT+GGG + chr7_2:79955424-79955443 None:intergenic 40.0%
TCTGCTAGTGACAGAAGAAA+TGG + chr7_2:79955425-79955444 None:intergenic 40.0%
!! AACTCTGGTTCTGTCCAAAA+TGG - chr7_2:79955686-79955705 Msa1080470:intron 40.0%
GCTCCAATCTTTGTCTATAC+TGG - chr7_2:79955833-79955852 Msa1080470:intron 40.0%
GAGTGGTTTACACAAAACAC+AGG - chr7_2:79955872-79955891 Msa1080470:intron 40.0%
ACAAAAAGACAATGCAGCTG+AGG + chr7_2:79955977-79955996 None:intergenic 40.0%
CTTGAGGTCAATGATAAGAG+TGG + chr7_2:79956344-79956363 None:intergenic 40.0%
AAAGCTCCAATTGCAACATG+TGG + chr7_2:79957082-79957101 None:intergenic 40.0%
! ATGATGTTGTCGAAGGCATA+TGG + chr7_2:79957148-79957167 None:intergenic 40.0%
GAAGAAACCGCCAAAAAACA+TGG - chr7_2:79957613-79957632 Msa1080470:five_prime_UTR 40.0%
!!! TAGTCCTCCATGTTTTTTGG+CGG + chr7_2:79957623-79957642 None:intergenic 40.0%
! ATAGGAGTAGATGCTTTGGA+AGG - chr7_2:79957784-79957803 Msa1080470:five_prime_UTR 40.0%
! TGGTGTTGGATAATCTGTCA+TGG + chr7_2:79957839-79957858 None:intergenic 40.0%
ATGGTTTGAACCTTTCTCAC+TGG + chr7_2:79957892-79957911 None:intergenic 40.0%
GCAGAAAAAGCCTAGTGGTT+GGG + chr7_2:79955448-79955467 None:intergenic 45.0%
!! CAACCACTAGGCTTTTTCTG+CGG - chr7_2:79955447-79955466 Msa1080470:intron 45.0%
CCAGAGTTTAGTTGTTGCTC+TGG + chr7_2:79955674-79955693 None:intergenic 45.0%
CCAGAGCAACAACTAAACTC+TGG - chr7_2:79955671-79955690 Msa1080470:intron 45.0%
GAAATGAGGGGAACATAGAG+TGG - chr7_2:79955855-79955874 Msa1080470:intron 45.0%
AAGACAATGCAGCTGAGGTA+GGG + chr7_2:79955972-79955991 None:intergenic 45.0%
AAAGACAATGCAGCTGAGGT+AGG + chr7_2:79955973-79955992 None:intergenic 45.0%
TCCATTTGGAGGCAAGAAGA+AGG - chr7_2:79956255-79956274 Msa1080470:intron 45.0%
ACCTTCTTCTTGCCTCCAAA+TGG + chr7_2:79956259-79956278 None:intergenic 45.0%
!! TGGATATCTTAGTTCTGCGC+AGG - chr7_2:79956303-79956322 Msa1080470:intron 45.0%
GAGTCTCCTGTTGTTGTGTT+TGG - chr7_2:79956382-79956401 Msa1080470:intron 45.0%
TCTCCTGTTGTTGTGTTTGG+AGG - chr7_2:79956385-79956404 Msa1080470:intron 45.0%
GATCCTCCAAACACAACAAC+AGG + chr7_2:79956391-79956410 None:intergenic 45.0%
GTTGTGTTTGGAGGATCCTA+TGG - chr7_2:79956394-79956413 Msa1080470:intron 45.0%
AACAGTAGCAATGCGATCCT+TGG - chr7_2:79956517-79956536 Msa1080470:intron 45.0%
TTGTGCGATGATGTTGTCGA+AGG + chr7_2:79957155-79957174 None:intergenic 45.0%
ACATCATCGCACAAGACTTC+AGG - chr7_2:79957161-79957180 Msa1080470:intron 45.0%
CATCATCGCACAAGACTTCA+GGG - chr7_2:79957162-79957181 Msa1080470:intron 45.0%
GAAACCGCCAAAAAACATGG+AGG - chr7_2:79957616-79957635 Msa1080470:five_prime_UTR 45.0%
!! GAGTAGATGCTTTGGAAGGT+TGG - chr7_2:79957788-79957807 Msa1080470:five_prime_UTR 45.0%
TGGCTGTATAAATCCAAGCC+TGG + chr7_2:79957819-79957838 None:intergenic 45.0%
! CTCAGGAAATTGGTTGGTGT+TGG + chr7_2:79957853-79957872 None:intergenic 45.0%
AAGGGACTCAGGAAATTGGT+TGG + chr7_2:79957859-79957878 None:intergenic 45.0%
TGGTAAGGGACTCAGGAAAT+TGG + chr7_2:79957863-79957882 None:intergenic 45.0%
CTCACTGGATATGCTGGTAA+GGG + chr7_2:79957877-79957896 None:intergenic 45.0%
TCTCACTGGATATGCTGGTA+AGG + chr7_2:79957878-79957897 None:intergenic 45.0%
ACCAGCATATCCAGTGAGAA+AGG - chr7_2:79957879-79957898 Msa1080470:five_prime_UTR 45.0%
ACCTTTCTCACTGGATATGC+TGG + chr7_2:79957883-79957902 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTACAA+AGG + chr7_2:79956797-79956816 None:intergenic 5.0%
!! TGTAAATTAAAATATAAAAA+TGG + chr7_2:79957214-79957233 None:intergenic 5.0%
!!! TATTTAATTTATTATTGTTT+TGG - chr7_2:79957745-79957764 Msa1080470:five_prime_UTR 5.0%
CGCAGAAAAAGCCTAGTGGT+TGG + chr7_2:79955449-79955468 None:intergenic 50.0%
GTTCCGCAGAAAAAGCCTAG+TGG + chr7_2:79955453-79955472 None:intergenic 50.0%
!! TCTTAGTTCTGCGCAGGCTT+TGG - chr7_2:79956309-79956328 Msa1080470:intron 50.0%
GTGTTTGGAGGATCCTATGG+AGG - chr7_2:79956397-79956416 Msa1080470:intron 50.0%
!!! TTTTTGCAGTGCTGGCTGCT+TGG - chr7_2:79957041-79957060 Msa1080470:intron 50.0%
!! GATGCTTTGGAAGGTTGGCT+TGG - chr7_2:79957793-79957812 Msa1080470:five_prime_UTR 50.0%
GATATGCTGGTAAGGGACTC+AGG + chr7_2:79957870-79957889 None:intergenic 50.0%
CACTAGCAGACCCAACCACT+AGG - chr7_2:79955435-79955454 Msa1080470:intron 55.0%
!! TTTGGAAGGTTGGCTTGGCC+AGG - chr7_2:79957798-79957817 Msa1080470:five_prime_UTR 55.0%
!! CAGTGCTGGCTGCTTGGTTC+AGG - chr7_2:79957047-79957066 Msa1080470:intron 60.0%
!! AAGGTTGGCTTGGCCAGGCT+TGG - chr7_2:79957803-79957822 Msa1080470:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 79955238 79957921 79955238 ID=Msa1080470;Name=Msa1080470
chr7_2 mRNA 79955238 79957921 79955238 ID=Msa1080470-mRNA-1;Parent=Msa1080470;Name=Msa1080470-mRNA-1;_AED=0.31;_eAED=0.31;_QI=319|0.75|0.6|1|1|1|5|0|323
chr7_2 exon 79955238 79955382 79955238 ID=Msa1080470-mRNA-1:exon:20178;Parent=Msa1080470-mRNA-1
chr7_2 exon 79955485 79955597 79955485 ID=Msa1080470-mRNA-1:exon:20177;Parent=Msa1080470-mRNA-1
chr7_2 exon 79955976 79956109 79955976 ID=Msa1080470-mRNA-1:exon:20176;Parent=Msa1080470-mRNA-1
chr7_2 exon 79956738 79956927 79956738 ID=Msa1080470-mRNA-1:exon:20175;Parent=Msa1080470-mRNA-1
chr7_2 exon 79957213 79957921 79957213 ID=Msa1080470-mRNA-1:exon:20174;Parent=Msa1080470-mRNA-1
chr7_2 five_prime_UTR 79957603 79957921 79957603 ID=Msa1080470-mRNA-1:five_prime_utr;Parent=Msa1080470-mRNA-1
chr7_2 CDS 79957213 79957602 79957213 ID=Msa1080470-mRNA-1:cds;Parent=Msa1080470-mRNA-1
chr7_2 CDS 79956738 79956927 79956738 ID=Msa1080470-mRNA-1:cds;Parent=Msa1080470-mRNA-1
chr7_2 CDS 79955976 79956109 79955976 ID=Msa1080470-mRNA-1:cds;Parent=Msa1080470-mRNA-1
chr7_2 CDS 79955485 79955597 79955485 ID=Msa1080470-mRNA-1:cds;Parent=Msa1080470-mRNA-1
chr7_2 CDS 79955238 79955382 79955238 ID=Msa1080470-mRNA-1:cds;Parent=Msa1080470-mRNA-1
Gene Sequence

>Msa1080470

ATGGCAATTATCTTCTTCCATTACAAAGTTTTACTCTTTTCTTTGTTTTCTCTTCTGTTCTTTACCTTCTCTTCTTCCCATATCATACCAAGATTTCCTTATTCAGTGATTAGTCCAGAGCAACAACTAAACTCTGGTTCTGTCCAAAATGGTCTTTACAGAACAAAGTTTTTCACTCAAATACTTGATCACTTCAATTATAACCCTCAGAGTTATCAGAAATTTCAACAAAGGTATCTCATCAATGATACTTATTGGGGCGGTGCCAAAAAGAAAGCTCCAATCTTTGTCTATACTGGAAATGAGGGGAACATAGAGTGGTTTACACAAAACACAGGTTTTATGTTTGAGCAAGCACCTAATTTCAATGCCCTTTTGGTTTTTATTGAGCATAGATTCTATGGAAAATCAATTCCATTTGGAGGCAAGAAGAAGGTTGCATATGCAAATAGCAGTACACTTGGATATCTTAGTTCTGCGCAGGCTTTGGCTGACTATGCCACTCTTATCATTGACCTCAAGAAAAATTTGTCAGCAACTGAGTCTCCTGTTGTTGTGTTTGGAGGATCCTATGGAGGAATGCTGGCTGCTTGGTTCAGGATGAAGTATCCACATGTTGCAATTGGAGCTTTAGCATCATCAGCTCCAATCCTCCAATTTGATGATTTGGTTTCACCATATGCCTTCGACAACATCATCGCACAAGACTTCAGGAGTGAGAGTGAGAATTGTTACAAAGTGATAAAAGGGTCATGGAAGCTAATAGAAGAAACCGCCAAAAAACATGGAGGACTAGAATTACTAAGGAAATCATTCAGAATATGCAATAATTATATAGGAGTAGATGCTTTGGAAGGTTGGCTTGGCCAGGCTTGGATTTATACAGCCATGACAGATTATCCAACACCAACCAATTTCCTGAGTCCCTTACCAGCATATCCAGTGAGAAAGGTTCAAACCATACCCTCTTAA

Protein sequence

>Msa1080470

MAIIFFHYKVLLFSLFSLLFFTFSSSHIIPRFPYSVISPEQQLNSGSVQNGLYRTKFFTQILDHFNYNPQSYQKFQQRYLINDTYWGGAKKKAPIFVYTGNEGNIEWFTQNTGFMFEQAPNFNALLVFIEHRFYGKSIPFGGKKKVAYANSSTLGYLSSAQALADYATLIIDLKKNLSATESPVVVFGGSYGGMLAAWFRMKYPHVAIGALASSAPILQFDDLVSPYAFDNIIAQDFRSESENCYKVIKGSWKLIEETAKKHGGLELLRKSFRICNNYIGVDALEGWLGQAWIYTAMTDYPTPTNFLSPLPAYPVRKVQTIPS*