Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0015930 | sp|Q96524|CRY2_ARATH | 66.229 | 533 | 171 | 3 | 10 | 539 | 6 | 532 | 0.0 | 734 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001830 | Msa0015930 | 0.818649 | 1.756109e-52 | -8.615850e-47 |
Msa0003640 | Msa0015930 | 0.833089 | 6.513305e-56 | -8.615850e-47 |
Msa0010490 | Msa0015930 | 0.804985 | 1.660792e-49 | -8.615850e-47 |
Msa0010500 | Msa0015930 | 0.800060 | 1.720507e-48 | -8.615850e-47 |
Msa0015930 | Msa0023010 | 0.860658 | 1.771832e-63 | -8.615850e-47 |
Msa0015930 | Msa0023040 | 0.877321 | 6.901848e-69 | -8.615850e-47 |
Msa0015930 | Msa0023050 | 0.856121 | 3.985097e-62 | -8.615850e-47 |
Msa0015930 | Msa0026680 | 0.853839 | 1.832830e-61 | -8.615850e-47 |
Msa0015930 | Msa0032580 | 0.803589 | 3.244261e-49 | -8.615850e-47 |
Msa0015930 | Msa0033110 | 0.835611 | 1.516883e-56 | -8.615850e-47 |
Msa0015930 | Msa0033260 | 0.833115 | 6.418612e-56 | -8.615850e-47 |
Msa0015930 | Msa0058300 | 0.838362 | 3.008998e-57 | -8.615850e-47 |
Msa0015930 | Msa0059580 | 0.803895 | 2.802808e-49 | -8.615850e-47 |
Msa0015930 | Msa0070860 | 0.838579 | 2.644204e-57 | -8.615850e-47 |
Msa0015930 | Msa0075960 | 0.831710 | 1.430527e-55 | -8.615850e-47 |
Msa0015930 | Msa0091410 | 0.836190 | 1.081950e-56 | -8.615850e-47 |
Msa0015930 | Msa0104430 | 0.814740 | 1.320781e-51 | -8.615850e-47 |
Msa0015930 | Msa0115190 | 0.818296 | 2.110278e-52 | -8.615850e-47 |
Msa0015930 | Msa0118540 | 0.812231 | 4.705033e-51 | -8.615850e-47 |
Msa0015930 | Msa0118790 | 0.842385 | 2.670167e-58 | -8.615850e-47 |
Msa0015930 | Msa0118810 | 0.827006 | 1.984822e-54 | -8.615850e-47 |
Msa0015930 | Msa0138630 | 0.824328 | 8.564884e-54 | -8.615850e-47 |
Msa0015930 | Msa0140630 | 0.884284 | 2.186277e-71 | -8.615850e-47 |
Msa0015930 | Msa0145080 | 0.850024 | 2.217602e-60 | -8.615850e-47 |
Msa0015930 | Msa0145160 | 0.809492 | 1.842653e-50 | -8.615850e-47 |
Msa0015930 | Msa0145730 | 0.819063 | 1.413681e-52 | -8.615850e-47 |
Msa0015930 | Msa0156370 | 0.979153 | 2.390095e-147 | -8.615850e-47 |
Msa0015930 | Msa0159340 | 0.817862 | 2.645988e-52 | -8.615850e-47 |
Msa0015930 | Msa0162120 | 0.844045 | 9.636916e-59 | -8.615850e-47 |
Msa0015930 | Msa0162130 | 0.849634 | 2.850666e-60 | -8.615850e-47 |
Msa0015930 | Msa0172970 | 0.803904 | 2.790690e-49 | -8.615850e-47 |
Msa0015930 | Msa0189520 | 0.803661 | 3.134172e-49 | -8.615850e-47 |
Msa0015930 | Msa0222310 | 0.825734 | 3.988800e-54 | -8.615850e-47 |
Msa0015930 | Msa0233630 | -0.807467 | 4.984087e-50 | -8.615850e-47 |
Msa0015930 | Msa0256330 | 0.809660 | 1.695837e-50 | -8.615850e-47 |
Msa0015930 | Msa0265430 | 0.831021 | 2.113907e-55 | -8.615850e-47 |
Msa0015930 | Msa0274040 | -0.805630 | 1.216402e-49 | -8.615850e-47 |
Msa0015930 | Msa0295330 | 0.804853 | 1.769285e-49 | -8.615850e-47 |
Msa0015930 | Msa0295710 | 0.819084 | 1.398564e-52 | -8.615850e-47 |
Msa0015930 | Msa0301620 | 0.800157 | 1.644328e-48 | -8.615850e-47 |
Msa0015930 | Msa0339040 | 0.817199 | 3.731444e-52 | -8.615850e-47 |
Msa0015930 | Msa0340380 | 0.834061 | 3.725796e-56 | -8.615850e-47 |
Msa0015930 | Msa0345350 | 0.833588 | 4.891519e-56 | -8.615850e-47 |
Msa0015930 | Msa0345390 | 0.816840 | 4.494751e-52 | -8.615850e-47 |
Msa0015930 | Msa0355140 | 0.857975 | 1.131463e-62 | -8.615850e-47 |
Msa0015930 | Msa0358860 | 0.816495 | 5.368701e-52 | -8.615850e-47 |
Msa0015930 | Msa0375310 | 0.825089 | 5.670042e-54 | -8.615850e-47 |
Msa0015930 | Msa0381500 | 0.885618 | 6.964482e-72 | -8.615850e-47 |
Msa0015930 | Msa0387820 | 0.811851 | 5.692917e-51 | -8.615850e-47 |
Msa0015930 | Msa0397540 | 0.804383 | 2.217691e-49 | -8.615850e-47 |
Msa0015930 | Msa0402210 | 0.866045 | 3.798566e-65 | -8.615850e-47 |
Msa0015930 | Msa0421500 | 0.833322 | 5.700745e-56 | -8.615850e-47 |
Msa0015930 | Msa0435980 | -0.832118 | 1.134726e-55 | -8.615850e-47 |
Msa0015930 | Msa0445330 | 0.852968 | 3.257712e-61 | -8.615850e-47 |
Msa0015930 | Msa0469560 | -0.874830 | 4.969351e-68 | -8.615850e-47 |
Msa0015930 | Msa0483770 | 0.857498 | 1.567032e-62 | -8.615850e-47 |
Msa0015930 | Msa0492890 | 0.823273 | 1.513897e-53 | -8.615850e-47 |
Msa0015930 | Msa0513990 | 0.832317 | 1.012991e-55 | -8.615850e-47 |
Msa0015930 | Msa0515270 | -0.876037 | 1.920165e-68 | -8.615850e-47 |
Msa0015930 | Msa0519950 | 0.880387 | 5.722289e-70 | -8.615850e-47 |
Msa0015930 | Msa0527690 | -0.829126 | 6.127353e-55 | -8.615850e-47 |
Msa0015930 | Msa0534900 | 0.817024 | 4.086948e-52 | -8.615850e-47 |
Msa0015930 | Msa0550120 | 0.915202 | 7.785142e-85 | -8.615850e-47 |
Msa0015930 | Msa0550150 | 0.893324 | 6.990939e-75 | -8.615850e-47 |
Msa0015930 | Msa0581280 | 0.808574 | 2.896885e-50 | -8.615850e-47 |
Msa0015930 | Msa0585830 | 0.826423 | 2.735654e-54 | -8.615850e-47 |
Msa0015930 | Msa0588260 | 0.843882 | 1.066127e-58 | -8.615850e-47 |
Msa0015930 | Msa0605630 | 0.904391 | 1.289262e-79 | -8.615850e-47 |
Msa0015930 | Msa0605640 | 0.830571 | 2.724965e-55 | -8.615850e-47 |
Msa0015930 | Msa0605650 | 0.899346 | 2.170103e-77 | -8.615850e-47 |
Msa0015930 | Msa0609660 | -0.800887 | 1.167437e-48 | -8.615850e-47 |
Msa0015930 | Msa0620890 | 0.814912 | 1.210074e-51 | -8.615850e-47 |
Msa0015930 | Msa0628030 | 0.806389 | 8.424352e-50 | -8.615850e-47 |
Msa0015930 | Msa0631350 | 0.816806 | 4.572928e-52 | -8.615850e-47 |
Msa0015930 | Msa0646580 | 0.898482 | 5.082117e-77 | -8.615850e-47 |
Msa0015930 | Msa0650500 | -0.810039 | 1.405457e-50 | -8.615850e-47 |
Msa0015930 | Msa0663490 | 0.808608 | 2.848537e-50 | -8.615850e-47 |
Msa0015930 | Msa0686210 | 0.874876 | 4.793407e-68 | -8.615850e-47 |
Msa0015930 | Msa0686220 | 0.839421 | 1.601053e-57 | -8.615850e-47 |
Msa0015930 | Msa0692240 | -0.819381 | 1.196727e-52 | -8.615850e-47 |
Msa0015930 | Msa0708930 | 0.839153 | 1.878304e-57 | -8.615850e-47 |
Msa0015930 | Msa0717230 | -0.859652 | 3.566935e-63 | -8.615850e-47 |
Msa0015930 | Msa0737600 | 0.818419 | 1.979366e-52 | -8.615850e-47 |
Msa0015930 | Msa0738380 | 0.825276 | 5.119647e-54 | -8.615850e-47 |
Msa0015930 | Msa0741230 | 0.842422 | 2.611174e-58 | -8.615850e-47 |
Msa0015930 | Msa0764680 | -0.841931 | 3.521163e-58 | -8.615850e-47 |
Msa0015930 | Msa0783960 | 0.804942 | 1.695832e-49 | -8.615850e-47 |
Msa0015930 | Msa0784860 | 0.812524 | 4.060454e-51 | -8.615850e-47 |
Msa0015930 | Msa0795730 | 0.867203 | 1.626814e-65 | -8.615850e-47 |
Msa0015930 | Msa0799680 | -0.855718 | 5.227805e-62 | -8.615850e-47 |
Msa0015930 | Msa0802240 | 0.822222 | 2.659153e-53 | -8.615850e-47 |
Msa0015930 | Msa0816730 | 0.816197 | 6.261070e-52 | -8.615850e-47 |
Msa0015930 | Msa0817730 | 0.836246 | 1.047376e-56 | -8.615850e-47 |
Msa0015930 | Msa0818750 | 0.856693 | 2.706482e-62 | -8.615850e-47 |
Msa0015930 | Msa0833470 | 0.846095 | 2.693511e-59 | -8.615850e-47 |
Msa0015930 | Msa0844220 | -0.822228 | 2.650242e-53 | -8.615850e-47 |
Msa0015930 | Msa0858180 | 0.836494 | 9.053189e-57 | -8.615850e-47 |
Msa0015930 | Msa0861860 | 0.849150 | 3.890329e-60 | -8.615850e-47 |
Msa0015930 | Msa0867720 | 0.827525 | 1.490709e-54 | -8.615850e-47 |
Msa0015930 | Msa0867730 | 0.905820 | 2.863648e-80 | -8.615850e-47 |
Msa0015930 | Msa0887250 | 0.827232 | 1.752650e-54 | -8.615850e-47 |
Msa0015930 | Msa0927260 | 0.808746 | 2.662442e-50 | -8.615850e-47 |
Msa0015930 | Msa0968610 | 0.883166 | 5.648498e-71 | -8.615850e-47 |
Msa0015930 | Msa0987370 | 0.806964 | 6.370510e-50 | -8.615850e-47 |
Msa0015930 | Msa1021520 | 0.815450 | 9.187695e-52 | -8.615850e-47 |
Msa0015930 | Msa1029050 | 0.863759 | 1.979048e-64 | -8.615850e-47 |
Msa0015930 | Msa1030620 | 0.861282 | 1.144945e-63 | -8.615850e-47 |
Msa0015930 | Msa1037420 | 0.852716 | 3.844802e-61 | -8.615850e-47 |
Msa0015930 | Msa1113700 | -0.835016 | 2.144930e-56 | -8.615850e-47 |
Msa0015930 | Msa1115080 | 0.809237 | 2.089939e-50 | -8.615850e-47 |
Msa0015930 | Msa1120130 | 0.822602 | 2.169941e-53 | -8.615850e-47 |
Msa0015930 | Msa1123810 | 0.844197 | 8.774079e-59 | -8.615850e-47 |
Msa0015930 | Msa1130820 | -0.823336 | 1.462983e-53 | -8.615850e-47 |
Msa0015930 | Msa1133230 | 0.824916 | 6.226446e-54 | -8.615850e-47 |
Msa0015930 | Msa1133250 | 0.815439 | 9.241205e-52 | -8.615850e-47 |
Msa0015930 | Msa1172610 | -0.822591 | 2.182891e-53 | -8.615850e-47 |
Msa0015930 | Msa1176710 | 0.808886 | 2.483985e-50 | -8.615850e-47 |
Msa0015930 | Msa1176720 | 0.819614 | 1.059069e-52 | -8.615850e-47 |
Msa0015930 | Msa1180500 | 0.860627 | 1.810766e-63 | -8.615850e-47 |
Msa0015930 | Msa1181250 | 0.811421 | 7.061863e-51 | -8.615850e-47 |
Msa0015930 | Msa1181330 | 0.809812 | 1.572258e-50 | -8.615850e-47 |
Msa0015930 | Msa1206270 | 0.826844 | 2.170392e-54 | -8.615850e-47 |
Msa0015930 | Msa1206290 | 0.813362 | 2.660069e-51 | -8.615850e-47 |
Msa0015930 | Msa1209200 | 0.808916 | 2.448112e-50 | -8.615850e-47 |
Msa0015930 | Msa1212190 | 0.843601 | 1.267564e-58 | -8.615850e-47 |
Msa0015930 | Msa1212270 | 0.844800 | 6.040357e-59 | -8.615850e-47 |
Msa0015930 | Msa1231840 | 0.892741 | 1.200511e-74 | -8.615850e-47 |
Msa0015930 | Msa1238840 | 0.818034 | 2.419370e-52 | -8.615850e-47 |
Msa0015930 | Msa1254730 | 0.804473 | 2.123963e-49 | -8.615850e-47 |
Msa0015930 | Msa1256810 | 0.823195 | 1.578271e-53 | -8.615850e-47 |
Msa0015930 | Msa1259910 | 0.841027 | 6.093875e-58 | -8.615850e-47 |
Msa0015930 | Msa1274560 | 0.869889 | 2.207143e-66 | -8.615850e-47 |
Msa0015930 | Msa1280320 | 0.812884 | 3.387093e-51 | -8.615850e-47 |
Msa0015930 | Msa1280340 | 0.847404 | 1.181264e-59 | -8.615850e-47 |
Msa0015930 | Msa1312520 | 0.859690 | 3.473241e-63 | -8.615850e-47 |
Msa0015930 | Msa1351540 | 0.802862 | 4.585974e-49 | -8.615850e-47 |
Msa0015930 | Msa1353750 | 0.840573 | 8.013897e-58 | -8.615850e-47 |
Msa0015930 | Msa1384360 | -0.833623 | 4.794494e-56 | -8.615850e-47 |
Msa0015930 | Msa1385770 | 0.825327 | 4.979895e-54 | -8.615850e-47 |
Msa0015930 | Msa1406670 | -0.815375 | 9.547218e-52 | -8.615850e-47 |
Msa0015930 | Msa1409240 | 0.826454 | 2.688754e-54 | -8.615850e-47 |
Msa0015930 | Msa1434140 | 0.819400 | 1.184528e-52 | -8.615850e-47 |
Msa0015930 | Msa1435390 | 0.800395 | 1.470323e-48 | -8.615850e-47 |
Msa0015930 | Msa1448870 | -0.820118 | 8.122184e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0015930 | MtrunA17_Chr1g0167721 | 95.000 | 600 | 30 | 0 | 8 | 607 | 1 | 600 | 0.0 | 1170 |
Msa0015930 | MtrunA17_Chr1g0187801 | 76.198 | 605 | 137 | 6 | 6 | 607 | 1 | 601 | 0.0 | 941 |
Msa0015930 | MtrunA17_Chr5g0426121 | 52.836 | 617 | 261 | 6 | 7 | 606 | 5 | 608 | 0.0 | 658 |
Msa0015930 | MtrunA17_Chr4g0003821 | 28.376 | 511 | 324 | 15 | 11 | 498 | 15 | 506 | 4.07e-49 | 179 |
Msa0015930 | MtrunA17_Chr3g0138841 | 27.181 | 493 | 285 | 17 | 4 | 451 | 91 | 554 | 4.71e-30 | 125 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0015930 | AT1G04400.1 | 66.229 | 533 | 171 | 3 | 10 | 539 | 6 | 532 | 0.0 | 734 |
Msa0015930 | AT1G04400.2 | 66.229 | 533 | 171 | 3 | 10 | 539 | 6 | 532 | 0.0 | 734 |
Msa0015930 | AT4G08920.1 | 52.445 | 593 | 270 | 5 | 12 | 601 | 15 | 598 | 0.0 | 633 |
Msa0015930 | AT3G15620.1 | 29.356 | 528 | 325 | 19 | 11 | 510 | 26 | 533 | 1.73e-53 | 192 |
Msa0015930 | AT3G15620.2 | 28.910 | 422 | 256 | 18 | 11 | 404 | 26 | 431 | 9.74e-35 | 137 |
Msa0015930 | AT5G24850.1 | 28.358 | 469 | 292 | 17 | 4 | 449 | 79 | 526 | 4.01e-33 | 134 |
Find 164 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTGATCCTTCAATGTTTA+AGG | 0.114298 | 1_1:+26135407 | Msa0015930:CDS |
CTATCTCCGTATATTCATTT+TGG | 0.143302 | 1_1:+26135180 | Msa0015930:CDS |
TTCGATTCTCCCTGCTAATT+TGG | 0.174829 | 1_1:-26133611 | None:intergenic |
GTTGTGTTTAATCATCTTTA+TGG | 0.220247 | 1_1:+26134064 | Msa0015930:CDS |
TAAAACTGTCCTTCCTCTTT+AGG | 0.235821 | 1_1:-26133890 | None:intergenic |
GAAGCAGTCTCTTTCTCATT+TGG | 0.269217 | 1_1:+26133940 | Msa0015930:CDS |
TTGTCCTTCAAGAAAACTTT+TGG | 0.273008 | 1_1:-26136107 | None:intergenic |
TAGTACTCTTAAAGCACTTT+TGG | 0.293721 | 1_1:+26134012 | Msa0015930:CDS |
GTTGGAATTCTCGCCAATTC+AGG | 0.307627 | 1_1:-26135864 | None:intergenic |
CTCTTTGGATTCTGAAGTAT+TGG | 0.315237 | 1_1:-26136173 | None:intergenic |
TGCAAGCATCTATTCCAAAA+AGG | 0.318620 | 1_1:-26134788 | None:intergenic |
TTAGGAGGATCATCACTCTT+TGG | 0.321111 | 1_1:-26136188 | None:intergenic |
TCTATGTCGATGATTGGTTT+TGG | 0.322368 | 1_1:-26135963 | None:intergenic |
CAGGATTGTCCTCAATTCTT+AGG | 0.325372 | 1_1:-26133814 | None:intergenic |
ATAGGACCATAGTTTGGTTT+AGG | 0.327813 | 1_1:+26133786 | Msa0015930:CDS |
TGTTGCTTATACCTTGGAAA+TGG | 0.329641 | 1_1:+26135547 | Msa0015930:CDS |
CTCATTCCTGCATCAACTAA+TGG | 0.329714 | 1_1:-26135456 | None:intergenic |
GTTCTAGCTTTAGTTGTTTG+TGG | 0.334866 | 1_1:+26133089 | Msa0015930:five_prime_UTR |
TCGATTCTCCCTGCTAATTT+GGG | 0.335623 | 1_1:-26133610 | None:intergenic |
TGGAGATTGTACTTATAGTT+AGG | 0.336130 | 1_1:+26133704 | Msa0015930:five_prime_UTR |
TTGCCACATGTTCCCTCCTC+TGG | 0.339618 | 1_1:+26133426 | Msa0015930:five_prime_UTR |
GATAGTGAACAATGAAACTA+TGG | 0.343032 | 1_1:-26132869 | None:intergenic |
CAAAATGAATATACGGAGAT+AGG | 0.361934 | 1_1:-26135179 | None:intergenic |
GTTGCTTATACCTTGGAAAT+GGG | 0.366312 | 1_1:+26135548 | Msa0015930:CDS |
AATTCTCCAAAATGAATATA+CGG | 0.366624 | 1_1:-26135186 | None:intergenic |
ATTAATTGACAAGGAGGAAT+AGG | 0.377359 | 1_1:-26134833 | None:intergenic |
ACCAATCATCGACATAGATT+TGG | 0.378217 | 1_1:+26135968 | Msa0015930:CDS |
TCGTCAATGGCTACCTGAAT+TGG | 0.379883 | 1_1:+26135851 | Msa0015930:CDS |
AGCTTACTAATAGAATAATA+AGG | 0.381124 | 1_1:+26136482 | Msa0015930:three_prime_UTR |
TGATCTTGAAAGTGATATCT+TGG | 0.390550 | 1_1:+26135605 | Msa0015930:CDS |
TTAAAATGTTGCTTATACCT+TGG | 0.391139 | 1_1:+26135541 | Msa0015930:CDS |
ATCCTTCAATGTTTAAGGCT+TGG | 0.397995 | 1_1:+26135412 | Msa0015930:CDS |
ATCAGAAAATGGGTATGAAT+AGG | 0.398859 | 1_1:+26133768 | Msa0015930:CDS |
TGCAGGAATGAGAGAGCTTT+GGG | 0.404630 | 1_1:+26135467 | Msa0015930:CDS |
ATGCAGGAATGAGAGAGCTT+TGG | 0.404880 | 1_1:+26135466 | Msa0015930:CDS |
CGCTCAAGCTCGTGACCATC+AGG | 0.409441 | 1_1:-26135654 | None:intergenic |
GCCAAATCTATGTCGATGAT+TGG | 0.412225 | 1_1:-26135969 | None:intergenic |
TAGTTAAAAGTAGAAATTTG+AGG | 0.421078 | 1_1:+26133552 | Msa0015930:five_prime_UTR |
TGAAGGTGAAGTGAAGGTTT+TGG | 0.425221 | 1_1:+26133731 | Msa0015930:five_prime_UTR |
GATCAGTCACTGAAATCTCT+TGG | 0.432839 | 1_1:+26133962 | Msa0015930:CDS |
CTCCAAGCCTTAAACATTGA+AGG | 0.434912 | 1_1:-26135414 | None:intergenic |
CTTCAATGTTTAAGGCTTGG+AGG | 0.448036 | 1_1:+26135415 | Msa0015930:CDS |
TTGAAATTCAGAATTGAAGT+TGG | 0.449738 | 1_1:+26132982 | Msa0015930:five_prime_UTR |
AGAGCATCAGGTGTAGAGTT+AGG | 0.453032 | 1_1:+26135930 | Msa0015930:CDS |
GTATGAATAGGACCATAGTT+TGG | 0.457722 | 1_1:+26133780 | Msa0015930:CDS |
TTGGGTTGGCAGTATATCTC+CGG | 0.458839 | 1_1:+26135624 | Msa0015930:CDS |
TATTGTTGAGTGAGACATGT+AGG | 0.460591 | 1_1:+26133218 | Msa0015930:five_prime_UTR |
ATGAGAGAGCTTTGGGCGAC+CGG | 0.460862 | 1_1:+26135474 | Msa0015930:CDS |
CTTAGCAAGCGGACTGATAC+CGG | 0.467453 | 1_1:+26136269 | Msa0015930:CDS |
ATGTTTAAGGCTTGGAGGCT+AGG | 0.469697 | 1_1:+26135420 | Msa0015930:CDS |
CGATAAAGAGGATCGAGAAC+AGG | 0.478530 | 1_1:+26136232 | Msa0015930:CDS |
GTCCCTCCTAAACCAAACTA+TGG | 0.481040 | 1_1:-26133792 | None:intergenic |
TTTCTGTGCAAAGCTACAAT+GGG | 0.484165 | 1_1:+26134702 | Msa0015930:CDS |
CCTACTGTGCTAAGAGCATC+AGG | 0.485757 | 1_1:+26135918 | Msa0015930:CDS |
TGAGGATAGGAACATTGTTA+TGG | 0.486111 | 1_1:-26136377 | None:intergenic |
ACTGCTTGAACTCTGTCTCT+TGG | 0.489451 | 1_1:-26136339 | None:intergenic |
TTAGCTAGAGCATGGTCTCC+AGG | 0.494738 | 1_1:+26135057 | Msa0015930:CDS |
CTTCTTCGTCAAATGATCAA+AGG | 0.495047 | 1_1:+26136147 | Msa0015930:CDS |
CTGCATTAGCTGCTGCTGCA+AGG | 0.495862 | 1_1:+26133834 | Msa0015930:CDS |
AAAACAAAGAGGCATAATCT+TGG | 0.496053 | 1_1:+26133283 | Msa0015930:five_prime_UTR |
ATTAGCCGACCCAAATTAGC+AGG | 0.497357 | 1_1:+26133601 | Msa0015930:five_prime_UTR |
AGGCTAAGCCAAGTGGGTTG+TGG | 0.498663 | 1_1:+26133684 | Msa0015930:five_prime_UTR |
AAGGCGAATACGTTCGTCAA+TGG | 0.498860 | 1_1:+26135838 | Msa0015930:CDS |
TGCATTAGCTGCTGCTGCAA+GGG | 0.499127 | 1_1:+26133835 | Msa0015930:CDS |
GGACCATAGTTTGGTTTAGG+AGG | 0.499764 | 1_1:+26133789 | Msa0015930:CDS |
GATCTTGAAAGTGATATCTT+GGG | 0.500193 | 1_1:+26135606 | Msa0015930:CDS |
TTAGCCTGATGGTATTGACT+TGG | 0.500755 | 1_1:-26133668 | None:intergenic |
CTTTATTTGGTGTCCTAAAG+AGG | 0.502443 | 1_1:+26133877 | Msa0015930:CDS |
TTAGCTGCTGCTGCAAGGGA+TGG | 0.503348 | 1_1:+26133839 | Msa0015930:CDS |
CGGGTAGAGTGTCGAGGTGG+TGG | 0.504560 | 1_1:+26133915 | Msa0015930:CDS |
TTCTTCGTCAAATGATCAAA+GGG | 0.505200 | 1_1:+26136148 | Msa0015930:CDS |
TCCCTCCTCTGGAGGTAATA+CGG | 0.507201 | 1_1:+26133437 | Msa0015930:five_prime_UTR |
CCACATGTTCCCTCCTCTGG+AGG | 0.511590 | 1_1:+26133429 | Msa0015930:five_prime_UTR |
TGTAGGAGATATCTGATCAC+TGG | 0.512203 | 1_1:-26133385 | None:intergenic |
TAGCCTGATGGTATTGACTT+GGG | 0.512526 | 1_1:-26133667 | None:intergenic |
ATTGTTGAGTGAGACATGTA+GGG | 0.516711 | 1_1:+26133219 | Msa0015930:five_prime_UTR |
GCTTGGAGGCTAGGTAGGAC+TGG | 0.519332 | 1_1:+26135429 | Msa0015930:CDS |
TTCTCCCTGCTAATTTGGGT+CGG | 0.520389 | 1_1:-26133606 | None:intergenic |
TTGAGGAGGAGCACACTCTC+AGG | 0.520395 | 1_1:+26133643 | Msa0015930:five_prime_UTR |
ACTTATAGTTAGGTGTATGA+AGG | 0.520949 | 1_1:+26133714 | Msa0015930:five_prime_UTR |
CACCACCTCGACACTCTACC+CGG | 0.521428 | 1_1:-26133914 | None:intergenic |
TCACTGAAATCTCTTGGAGC+TGG | 0.521850 | 1_1:+26133968 | Msa0015930:CDS |
ACACATATCTCAACCGAGAC+AGG | 0.523377 | 1_1:-26133491 | None:intergenic |
CTCAAGCTATATTCAAGATG+TGG | 0.523430 | 1_1:+26136006 | Msa0015930:CDS |
TTAAGGCTTGGAGGCTAGGT+AGG | 0.523693 | 1_1:+26135424 | Msa0015930:CDS |
CGGTATCAGTCCGCTTGCTA+AGG | 0.524783 | 1_1:-26136268 | None:intergenic |
CTTGCAGCAGCAGCTAATGC+AGG | 0.525751 | 1_1:-26133833 | None:intergenic |
TGAGTGAGACATGTAGGGAA+AGG | 0.525981 | 1_1:+26133224 | Msa0015930:five_prime_UTR |
GGATATCCATTAGTTGATGC+AGG | 0.527111 | 1_1:+26135450 | Msa0015930:CDS |
ATTTCTGTGCAAAGCTACAA+TGG | 0.528775 | 1_1:+26134701 | Msa0015930:CDS |
GACCATAGTTTGGTTTAGGA+GGG | 0.533212 | 1_1:+26133790 | Msa0015930:CDS |
TATTTCATTCCCCATTTCCA+AGG | 0.533939 | 1_1:-26135558 | None:intergenic |
ACCGTCGAGAGGCCATTGCT+AGG | 0.534149 | 1_1:+26135360 | Msa0015930:CDS |
TAGGAGGGACCTAAGAATTG+AGG | 0.537254 | 1_1:+26133805 | Msa0015930:CDS |
TGAGAGTGTGCTCCTCCTCA+AGG | 0.539019 | 1_1:-26133641 | None:intergenic |
GGTGTATGAAGGTGAAGTGA+AGG | 0.542761 | 1_1:+26133725 | Msa0015930:five_prime_UTR |
ATTTGGTGTCCTAAAGAGGA+AGG | 0.543297 | 1_1:+26133881 | Msa0015930:CDS |
CCGTCGAGAGGCCATTGCTA+GGG | 0.543369 | 1_1:+26135361 | Msa0015930:CDS |
AATGGCCTCTCGACGGTGAA+CGG | 0.543863 | 1_1:-26135354 | None:intergenic |
CTAGAGCATGGTCTCCAGGT+TGG | 0.544636 | 1_1:+26135061 | Msa0015930:CDS |
CTGAGTGGATCCATCATCCA+TGG | 0.545436 | 1_1:+26135886 | Msa0015930:CDS |
TGATCACGAACAAGTGAGAC+TGG | 0.549488 | 1_1:-26134647 | None:intergenic |
GAGAGCTTTGGGCGACCGGA+TGG | 0.551139 | 1_1:+26135478 | Msa0015930:CDS |
GGTCCCAAGTCAATACCATC+AGG | 0.551524 | 1_1:+26133664 | Msa0015930:five_prime_UTR |
CAACTTTATATTAGTAGATG+AGG | 0.554125 | 1_1:-26136395 | None:intergenic |
TTATATTAGTAGATGAGGAT+AGG | 0.556442 | 1_1:-26136390 | None:intergenic |
GGATGATGGATCCACTCAGT+TGG | 0.557800 | 1_1:-26135882 | None:intergenic |
GTGCTCCTCCTCAAGGTCTG+AGG | 0.560827 | 1_1:-26133634 | None:intergenic |
ATTCAAGATGTGGGAAGATG+AGG | 0.561877 | 1_1:+26136016 | Msa0015930:CDS |
ACAGTAGGTGGTGCATTCCA+TGG | 0.562035 | 1_1:-26135903 | None:intergenic |
TACAATCTCCACAACCCACT+TGG | 0.562522 | 1_1:-26133692 | None:intergenic |
TTGCTTATACCTTGGAAATG+GGG | 0.565679 | 1_1:+26135549 | Msa0015930:CDS |
ACTAAATATAACACCTGTCT+CGG | 0.565818 | 1_1:+26133478 | Msa0015930:five_prime_UTR |
AATTTCAAGTTCCCTAGCAA+TGG | 0.567410 | 1_1:-26135372 | None:intergenic |
TTGATCAATGCATGACACTC+CGG | 0.568405 | 1_1:-26136288 | None:intergenic |
GTGGTGCATTCCATGGATGA+TGG | 0.569550 | 1_1:-26135896 | None:intergenic |
CTACTAATATAAAGTTGTCA+TGG | 0.571307 | 1_1:+26136401 | Msa0015930:three_prime_UTR |
ACCCACTTGGCTTAGCCTGA+TGG | 0.571674 | 1_1:-26133679 | None:intergenic |
TGGTCACGAGCTTGAGCGGT+TGG | 0.573358 | 1_1:+26135659 | Msa0015930:CDS |
TCTGGAGGTAATACGGTTCG+AGG | 0.574264 | 1_1:+26133444 | Msa0015930:five_prime_UTR |
CCTGATGCTCTTAGCACAGT+AGG | 0.576112 | 1_1:-26135918 | None:intergenic |
TTAGGACACCAAATAAAGAC+AGG | 0.576690 | 1_1:-26133872 | None:intergenic |
TGGGTTGGCAGTATATCTCC+GGG | 0.580136 | 1_1:+26135625 | Msa0015930:CDS |
CTGATGGTCACGAGCTTGAG+CGG | 0.582318 | 1_1:+26135655 | Msa0015930:CDS |
TCAAGCTATATTCAAGATGT+GGG | 0.585612 | 1_1:+26136007 | Msa0015930:CDS |
AACCGTATTACCTCCAGAGG+AGG | 0.587134 | 1_1:-26133439 | None:intergenic |
TTGAAAGTGATATCTTGGGT+TGG | 0.587182 | 1_1:+26135610 | Msa0015930:CDS |
ATTTAAGTAACCTTAGCAAG+CGG | 0.591683 | 1_1:+26136258 | Msa0015930:CDS |
TGTGAGGAAAGTATTTCAGT+TGG | 0.593409 | 1_1:+26135212 | Msa0015930:CDS |
TGGCATATATATGACGAAAG+TGG | 0.593822 | 1_1:+26134743 | Msa0015930:CDS |
ATGGATACACAACAAAATGC+GGG | 0.597128 | 1_1:+26135497 | Msa0015930:CDS |
CCCTAGCAATGGCCTCTCGA+CGG | 0.600478 | 1_1:-26135361 | None:intergenic |
GTGACCATCAGGTAAGCTCC+CGG | 0.601745 | 1_1:-26135643 | None:intergenic |
ATTGAAGGATCAGTATTCCA+AGG | 0.605723 | 1_1:-26135399 | None:intergenic |
GAATCGAACCTCAGACCTTG+AGG | 0.606452 | 1_1:+26133626 | Msa0015930:five_prime_UTR |
ACCATCAGGCTAAGCCAAGT+GGG | 0.608981 | 1_1:+26133678 | Msa0015930:five_prime_UTR |
CCTCCAGAGGAGGGAACATG+TGG | 0.609072 | 1_1:-26133429 | None:intergenic |
AAACATTCAATTGAGCAACT+AGG | 0.612068 | 1_1:+26134997 | Msa0015930:CDS |
CTTTCGTCATATATATGCCA+CGG | 0.614882 | 1_1:-26134740 | None:intergenic |
TACCATCAGGCTAAGCCAAG+TGG | 0.616265 | 1_1:+26133677 | Msa0015930:five_prime_UTR |
ATGCATTATTAGCTAGAGCA+TGG | 0.623271 | 1_1:+26135049 | Msa0015930:CDS |
TGAGTACTCTCGAAATCCAA+TGG | 0.628966 | 1_1:-26135310 | None:intergenic |
GATGGATACACAACAAAATG+CGG | 0.629254 | 1_1:+26135496 | Msa0015930:CDS |
GGGACAAAATACGATTCAGA+AGG | 0.630951 | 1_1:+26135819 | Msa0015930:CDS |
TTTATCCGGGTAGAGTGTCG+AGG | 0.638088 | 1_1:+26133909 | Msa0015930:CDS |
ACCGTATTACCTCCAGAGGA+GGG | 0.643277 | 1_1:-26133438 | None:intergenic |
GCTAGAATTAATTGACAAGG+AGG | 0.644384 | 1_1:-26134839 | None:intergenic |
TGAGCGGTTGGACGATCCAG+AGG | 0.648762 | 1_1:+26135671 | Msa0015930:CDS |
TGGCGAGAATTCCAACTGAG+TGG | 0.655146 | 1_1:+26135871 | Msa0015930:CDS |
TCGAACCGTATTACCTCCAG+AGG | 0.656213 | 1_1:-26133442 | None:intergenic |
ATCTCCGGGAGCTTACCTGA+TGG | 0.656477 | 1_1:+26135639 | Msa0015930:CDS |
AGGTTGGAGCAAAAGTGACA+AGG | 0.665168 | 1_1:+26135077 | Msa0015930:CDS |
TCGAACCTCAGACCTTGAGG+AGG | 0.667969 | 1_1:+26133629 | Msa0015930:five_prime_UTR |
GACGAAGAAGTAGCGCCGCG+TGG | 0.670480 | 1_1:-26136134 | None:intergenic |
AATATACGGAGATAGGAGTG+AGG | 0.680107 | 1_1:-26135172 | None:intergenic |
TGTCAATTAATTCTAGCACA+AGG | 0.682737 | 1_1:+26134845 | Msa0015930:CDS |
TGTGCTAGAATTAATTGACA+AGG | 0.684750 | 1_1:-26134842 | None:intergenic |
GATGCTCTTAGCACAGTAGG+TGG | 0.688179 | 1_1:-26135915 | None:intergenic |
ATCCGGGTAGAGTGTCGAGG+TGG | 0.688806 | 1_1:+26133912 | Msa0015930:CDS |
TAAGATGCAGCAAAACACAA+AGG | 0.691176 | 1_1:-26133359 | None:intergenic |
TTAGCCGACCCAAATTAGCA+GGG | 0.692763 | 1_1:+26133602 | Msa0015930:five_prime_UTR |
TTGAAGGACAAGGCTCCACG+CGG | 0.705632 | 1_1:+26136119 | Msa0015930:CDS |
GGGACTTGTTACATGAACCG+TGG | 0.709661 | 1_1:+26134723 | Msa0015930:CDS |
TTCTGTGCAAAGCTACAATG+GGG | 0.718476 | 1_1:+26134703 | Msa0015930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTGTTTGTTATAAAA+TGG | + | chr1_1:26133169-26133188 | Msa0015930:five_prime_UTR | 10.0% |
!! | AAACAAAAAAAAAAAGACTA+AGG | - | chr1_1:26133160-26133179 | None:intergenic | 15.0% |
!! | CTAAAAACAAAAATATATGT+AGG | - | chr1_1:26133405-26133424 | None:intergenic | 15.0% |
!!! | ATACTTTTTACAAAACAAAG+AGG | + | chr1_1:26133272-26133291 | Msa0015930:five_prime_UTR | 20.0% |
!! | TAGTTAAAAGTAGAAATTTG+AGG | + | chr1_1:26133552-26133571 | Msa0015930:five_prime_UTR | 20.0% |
!!! | AAACTTGTTTACAATTGATA+TGG | + | chr1_1:26134210-26134229 | Msa0015930:intron | 20.0% |
!! | ACAAAAAGTAGATTAAATCT+TGG | + | chr1_1:26135138-26135157 | Msa0015930:CDS | 20.0% |
!! | AATTCTCCAAAATGAATATA+CGG | - | chr1_1:26135189-26135208 | None:intergenic | 20.0% |
! | TTGAAATTCAGAATTGAAGT+TGG | + | chr1_1:26132982-26133001 | Msa0015930:five_prime_UTR | 25.0% |
! | TGGAATGAAAAATCAGAAAA+TGG | + | chr1_1:26133757-26133776 | Msa0015930:exon | 25.0% |
! | GGAATGAAAAATCAGAAAAT+GGG | + | chr1_1:26133758-26133777 | Msa0015930:exon | 25.0% |
! | GTTGTGTTTAATCATCTTTA+TGG | + | chr1_1:26134064-26134083 | Msa0015930:CDS | 25.0% |
!! | AAAGAAATCCATCTTTTCAA+TGG | - | chr1_1:26134099-26134118 | None:intergenic | 25.0% |
!!! | ACTACACTAGTTTTTTTTGA+AGG | - | chr1_1:26134343-26134362 | None:intergenic | 25.0% |
! | TCAAAAAAAACTAGTGTAGT+TGG | + | chr1_1:26134343-26134362 | Msa0015930:intron | 25.0% |
! | AGATATCATACAAGTATTTG+TGG | + | chr1_1:26134397-26134416 | Msa0015930:intron | 25.0% |
! | CAACATCAAAGAAAAATTAG+TGG | + | chr1_1:26134670-26134689 | Msa0015930:CDS | 25.0% |
! | AAAGAAAAATTAGTGGAACT+TGG | + | chr1_1:26134677-26134696 | Msa0015930:CDS | 25.0% |
!!! | GTTTGTTTCTTTTGTTGTTT+TGG | + | chr1_1:26134957-26134976 | Msa0015930:intron | 25.0% |
!!! | TACTTTTTGTGTAGTGAATT+AGG | - | chr1_1:26135128-26135147 | None:intergenic | 25.0% |
!! | TTAAAATGTTGCTTATACCT+TGG | + | chr1_1:26135541-26135560 | Msa0015930:CDS | 25.0% |
!! | AATGGGGAATGAAATATTTT+TGG | + | chr1_1:26135565-26135584 | Msa0015930:CDS | 25.0% |
!! | ATGGGGAATGAAATATTTTT+GGG | + | chr1_1:26135566-26135585 | Msa0015930:CDS | 25.0% |
!!! | AACTTCATGTTTATTTTCTG+AGG | - | chr1_1:26136060-26136079 | None:intergenic | 25.0% |
!!! | CATTTTTGTTTCTTCGTATT+AGG | - | chr1_1:26136209-26136228 | None:intergenic | 25.0% |
!! | ACAAAAATGTATCGATAAAG+AGG | + | chr1_1:26136220-26136239 | Msa0015930:CDS | 25.0% |
! | TTATATTAGTAGATGAGGAT+AGG | - | chr1_1:26136393-26136412 | None:intergenic | 25.0% |
! | CAACTTTATATTAGTAGATG+AGG | - | chr1_1:26136398-26136417 | None:intergenic | 25.0% |
! | CTACTAATATAAAGTTGTCA+TGG | + | chr1_1:26136401-26136420 | Msa0015930:three_prime_UTR | 25.0% |
GATAGTGAACAATGAAACTA+TGG | - | chr1_1:26132872-26132891 | None:intergenic | 30.0% | |
! | GTATGTGCTAGATATTTTCA+TGG | - | chr1_1:26132934-26132953 | None:intergenic | 30.0% |
! | AAAACAAAGAGGCATAATCT+TGG | + | chr1_1:26133283-26133302 | Msa0015930:five_prime_UTR | 30.0% |
ACTAAATATAACACCTGTCT+CGG | + | chr1_1:26133478-26133497 | Msa0015930:five_prime_UTR | 30.0% | |
TGGAGATTGTACTTATAGTT+AGG | + | chr1_1:26133704-26133723 | Msa0015930:five_prime_UTR | 30.0% | |
ACTTATAGTTAGGTGTATGA+AGG | + | chr1_1:26133714-26133733 | Msa0015930:five_prime_UTR | 30.0% | |
ATCAGAAAATGGGTATGAAT+AGG | + | chr1_1:26133768-26133787 | Msa0015930:CDS | 30.0% | |
!! | CTGTTTTTCCTGTCTTTATT+TGG | + | chr1_1:26133864-26133883 | Msa0015930:CDS | 30.0% |
!! | TAGTACTCTTAAAGCACTTT+TGG | + | chr1_1:26134012-26134031 | Msa0015930:CDS | 30.0% |
AAGTGATTCCATTGAAAAGA+TGG | + | chr1_1:26134088-26134107 | Msa0015930:intron | 30.0% | |
TACCTCGAGAGTTAATAAAT+CGG | + | chr1_1:26134177-26134196 | Msa0015930:intron | 30.0% | |
TGTAGCAAAACTAGTATAGT+TGG | + | chr1_1:26134310-26134329 | Msa0015930:intron | 30.0% | |
GAATGAGTGTGATAAATTCA+TGG | - | chr1_1:26134460-26134479 | None:intergenic | 30.0% | |
TGAATTTATCACACTCATTC+CGG | + | chr1_1:26134460-26134479 | Msa0015930:intron | 30.0% | |
TGTTTCACTGTCTTTCTATT+TGG | + | chr1_1:26134491-26134510 | Msa0015930:intron | 30.0% | |
CTATTTGGTTATCTGATATG+CGG | + | chr1_1:26134506-26134525 | Msa0015930:intron | 30.0% | |
! | TTACAACCTTTGATCCTTTT+TGG | + | chr1_1:26134774-26134793 | Msa0015930:CDS | 30.0% |
TCTATTCCAAAAAGGATCAA+AGG | - | chr1_1:26134783-26134802 | None:intergenic | 30.0% | |
ATTAATTGACAAGGAGGAAT+AGG | - | chr1_1:26134836-26134855 | None:intergenic | 30.0% | |
TGTGCTAGAATTAATTGACA+AGG | - | chr1_1:26134845-26134864 | None:intergenic | 30.0% | |
TGTCAATTAATTCTAGCACA+AGG | + | chr1_1:26134845-26134864 | Msa0015930:CDS | 30.0% | |
AAACATTCAATTGAGCAACT+AGG | + | chr1_1:26134997-26135016 | Msa0015930:CDS | 30.0% | |
!! | TAGGTTGTTTTCGACAAATT+CGG | - | chr1_1:26135109-26135128 | None:intergenic | 30.0% |
CAAAATGAATATACGGAGAT+AGG | - | chr1_1:26135182-26135201 | None:intergenic | 30.0% | |
! | CTATCTCCGTATATTCATTT+TGG | + | chr1_1:26135180-26135199 | Msa0015930:CDS | 30.0% |
! | CAGATTTTATGGAAAAACGA+AGG | + | chr1_1:26135246-26135265 | Msa0015930:CDS | 30.0% |
!!! | GGAACTTGAAATTTTTTCCT+TGG | + | chr1_1:26135382-26135401 | Msa0015930:CDS | 30.0% |
TACTGATCCTTCAATGTTTA+AGG | + | chr1_1:26135407-26135426 | Msa0015930:CDS | 30.0% | |
TGATCTTGAAAGTGATATCT+TGG | + | chr1_1:26135605-26135624 | Msa0015930:CDS | 30.0% | |
GATCTTGAAAGTGATATCTT+GGG | + | chr1_1:26135606-26135625 | Msa0015930:CDS | 30.0% | |
! | TTGTGTTTTCTTGTATTGCA+CGG | + | chr1_1:26135698-26135717 | Msa0015930:intron | 30.0% |
! | AACTTTTGTGAACAGATTCA+AGG | + | chr1_1:26135798-26135817 | Msa0015930:intron | 30.0% |
! | ACTTTTGTGAACAGATTCAA+GGG | + | chr1_1:26135799-26135818 | Msa0015930:intron | 30.0% |
TCAAGCTATATTCAAGATGT+GGG | + | chr1_1:26136007-26136026 | Msa0015930:CDS | 30.0% | |
!! | TTCATGTTTATTTTCTGAGG+TGG | - | chr1_1:26136057-26136076 | None:intergenic | 30.0% |
! | GATTCCAAAAGTTTTCTTGA+AGG | + | chr1_1:26136103-26136122 | Msa0015930:CDS | 30.0% |
! | TTGTCCTTCAAGAAAACTTT+TGG | - | chr1_1:26136110-26136129 | None:intergenic | 30.0% |
! | AAAAGTTTTCTTGAAGGACA+AGG | + | chr1_1:26136109-26136128 | Msa0015930:CDS | 30.0% |
TTCTTCGTCAAATGATCAAA+GGG | + | chr1_1:26136148-26136167 | Msa0015930:CDS | 30.0% | |
!! | TTTTGTTTCTTCGTATTAGG+AGG | - | chr1_1:26136206-26136225 | None:intergenic | 30.0% |
ATTTAAGTAACCTTAGCAAG+CGG | + | chr1_1:26136258-26136277 | Msa0015930:CDS | 30.0% | |
!! | GTTCTAGCTTTAGTTGTTTG+TGG | + | chr1_1:26133089-26133108 | Msa0015930:five_prime_UTR | 35.0% |
TATTGTTGAGTGAGACATGT+AGG | + | chr1_1:26133218-26133237 | Msa0015930:five_prime_UTR | 35.0% | |
ATTGTTGAGTGAGACATGTA+GGG | + | chr1_1:26133219-26133238 | Msa0015930:five_prime_UTR | 35.0% | |
TAAGATGCAGCAAAACACAA+AGG | - | chr1_1:26133362-26133381 | None:intergenic | 35.0% | |
GTATGAATAGGACCATAGTT+TGG | + | chr1_1:26133780-26133799 | Msa0015930:CDS | 35.0% | |
! | ATAGGACCATAGTTTGGTTT+AGG | + | chr1_1:26133786-26133805 | Msa0015930:CDS | 35.0% |
TTAGGACACCAAATAAAGAC+AGG | - | chr1_1:26133875-26133894 | None:intergenic | 35.0% | |
!! | CTTTATTTGGTGTCCTAAAG+AGG | + | chr1_1:26133877-26133896 | Msa0015930:CDS | 35.0% |
TAAAACTGTCCTTCCTCTTT+AGG | - | chr1_1:26133893-26133912 | None:intergenic | 35.0% | |
TTATTAACTCTCGAGGTAAC+AGG | - | chr1_1:26134175-26134194 | None:intergenic | 35.0% | |
!! | TACCGATTTATTAACTCTCG+AGG | - | chr1_1:26134182-26134201 | None:intergenic | 35.0% |
! | ACATAAACTGATTCTCACTC+TGG | - | chr1_1:26134254-26134273 | None:intergenic | 35.0% |
GATATGAAACAGATCAGTGA+AGG | - | chr1_1:26134582-26134601 | None:intergenic | 35.0% | |
TAAAAGAAGTGGAGATCATC+AGG | - | chr1_1:26134621-26134640 | None:intergenic | 35.0% | |
ACTGGATCTGTTAAAAGAAG+TGG | - | chr1_1:26134632-26134651 | None:intergenic | 35.0% | |
ATTTCTGTGCAAAGCTACAA+TGG | + | chr1_1:26134701-26134720 | Msa0015930:CDS | 35.0% | |
TTTCTGTGCAAAGCTACAAT+GGG | + | chr1_1:26134702-26134721 | Msa0015930:CDS | 35.0% | |
CTTTCGTCATATATATGCCA+CGG | - | chr1_1:26134743-26134762 | None:intergenic | 35.0% | |
TGGCATATATATGACGAAAG+TGG | + | chr1_1:26134743-26134762 | Msa0015930:CDS | 35.0% | |
TGCAAGCATCTATTCCAAAA+AGG | - | chr1_1:26134791-26134810 | None:intergenic | 35.0% | |
GCTAGAATTAATTGACAAGG+AGG | - | chr1_1:26134842-26134861 | None:intergenic | 35.0% | |
ACTCACTTGAATTTGTAGAC+AGG | - | chr1_1:26134937-26134956 | None:intergenic | 35.0% | |
!!! | TCTTTTGTTGTTTTGGTGAC+AGG | + | chr1_1:26134964-26134983 | Msa0015930:intron | 35.0% |
ATGCATTATTAGCTAGAGCA+TGG | + | chr1_1:26135049-26135068 | Msa0015930:CDS | 35.0% | |
!! | ATTTTGGAGAATTGAGTGTG+AGG | + | chr1_1:26135196-26135215 | Msa0015930:CDS | 35.0% |
!! | TGTGAGGAAAGTATTTCAGT+TGG | + | chr1_1:26135212-26135231 | Msa0015930:CDS | 35.0% |
! | CACGAACGAAACAGATTTTA+TGG | + | chr1_1:26135235-26135254 | Msa0015930:CDS | 35.0% |
AAAAACGAAGGAAACATCGT+CGG | + | chr1_1:26135258-26135277 | Msa0015930:CDS | 35.0% | |
!!! | ACGTTTTTTCTCAAAGCCAT+TGG | + | chr1_1:26135294-26135313 | Msa0015930:CDS | 35.0% |
!! | AATTTCAAGTTCCCTAGCAA+TGG | - | chr1_1:26135375-26135394 | None:intergenic | 35.0% |
ATTGAAGGATCAGTATTCCA+AGG | - | chr1_1:26135402-26135421 | None:intergenic | 35.0% | |
! | ATCCTTCAATGTTTAAGGCT+TGG | + | chr1_1:26135412-26135431 | Msa0015930:CDS | 35.0% |
!! | CATTTTGTTGTGTATCCATC+CGG | - | chr1_1:26135496-26135515 | None:intergenic | 35.0% |
GATGGATACACAACAAAATG+CGG | + | chr1_1:26135496-26135515 | Msa0015930:CDS | 35.0% | |
ATGGATACACAACAAAATGC+GGG | + | chr1_1:26135497-26135516 | Msa0015930:CDS | 35.0% | |
! | TGTTGCTTATACCTTGGAAA+TGG | + | chr1_1:26135547-26135566 | Msa0015930:CDS | 35.0% |
GTTGCTTATACCTTGGAAAT+GGG | + | chr1_1:26135548-26135567 | Msa0015930:CDS | 35.0% | |
TTGCTTATACCTTGGAAATG+GGG | + | chr1_1:26135549-26135568 | Msa0015930:CDS | 35.0% | |
TATTTCATTCCCCATTTCCA+AGG | - | chr1_1:26135561-26135580 | None:intergenic | 35.0% | |
TTGAAAGTGATATCTTGGGT+TGG | + | chr1_1:26135610-26135629 | Msa0015930:CDS | 35.0% | |
AAGAAAACACAACTTACCTC+TGG | - | chr1_1:26135690-26135709 | None:intergenic | 35.0% | |
!!! | TCTATGTCGATGATTGGTTT+TGG | - | chr1_1:26135966-26135985 | None:intergenic | 35.0% |
ACCAATCATCGACATAGATT+TGG | + | chr1_1:26135968-26135987 | Msa0015930:CDS | 35.0% | |
CTCAAGCTATATTCAAGATG+TGG | + | chr1_1:26136006-26136025 | Msa0015930:CDS | 35.0% | |
CTTCTTCGTCAAATGATCAA+AGG | + | chr1_1:26136147-26136166 | Msa0015930:CDS | 35.0% | |
!! | CTCTTTGGATTCTGAAGTAT+TGG | - | chr1_1:26136176-26136195 | None:intergenic | 35.0% |
TGAGGATAGGAACATTGTTA+TGG | - | chr1_1:26136380-26136399 | None:intergenic | 35.0% | |
TGTAGGAGATATCTGATCAC+TGG | - | chr1_1:26133388-26133407 | None:intergenic | 40.0% | |
TCGATTCTCCCTGCTAATTT+GGG | - | chr1_1:26133613-26133632 | None:intergenic | 40.0% | |
TTCGATTCTCCCTGCTAATT+TGG | - | chr1_1:26133614-26133633 | None:intergenic | 40.0% | |
!! | TAGCCTGATGGTATTGACTT+GGG | - | chr1_1:26133670-26133689 | None:intergenic | 40.0% |
!! | TTAGCCTGATGGTATTGACT+TGG | - | chr1_1:26133671-26133690 | None:intergenic | 40.0% |
! | TGAAGGTGAAGTGAAGGTTT+TGG | + | chr1_1:26133731-26133750 | Msa0015930:five_prime_UTR | 40.0% |
!!! | TGAAGTGAAGGTTTTGGTTG+TGG | + | chr1_1:26133737-26133756 | Msa0015930:five_prime_UTR | 40.0% |
! | GACCATAGTTTGGTTTAGGA+GGG | + | chr1_1:26133790-26133809 | Msa0015930:CDS | 40.0% |
CAGGATTGTCCTCAATTCTT+AGG | - | chr1_1:26133817-26133836 | None:intergenic | 40.0% | |
!! | ATTTGGTGTCCTAAAGAGGA+AGG | + | chr1_1:26133881-26133900 | Msa0015930:CDS | 40.0% |
!! | AGAGGAAGGACAGTTTTATC+CGG | + | chr1_1:26133895-26133914 | Msa0015930:CDS | 40.0% |
GAAGCAGTCTCTTTCTCATT+TGG | + | chr1_1:26133940-26133959 | Msa0015930:CDS | 40.0% | |
GATCAGTCACTGAAATCTCT+TGG | + | chr1_1:26133962-26133981 | Msa0015930:CDS | 40.0% | |
ACAGTGAAACATTCAGACAC+CGG | - | chr1_1:26134482-26134501 | None:intergenic | 40.0% | |
TTCTGTGCAAAGCTACAATG+GGG | + | chr1_1:26134703-26134722 | Msa0015930:CDS | 40.0% | |
AATATACGGAGATAGGAGTG+AGG | - | chr1_1:26135175-26135194 | None:intergenic | 40.0% | |
TGAGTACTCTCGAAATCCAA+TGG | - | chr1_1:26135313-26135332 | None:intergenic | 40.0% | |
CTCCAAGCCTTAAACATTGA+AGG | - | chr1_1:26135417-26135436 | None:intergenic | 40.0% | |
! | CTTCAATGTTTAAGGCTTGG+AGG | + | chr1_1:26135415-26135434 | Msa0015930:CDS | 40.0% |
! | GGATATCCATTAGTTGATGC+AGG | + | chr1_1:26135450-26135469 | Msa0015930:CDS | 40.0% |
CTCATTCCTGCATCAACTAA+TGG | - | chr1_1:26135459-26135478 | None:intergenic | 40.0% | |
GGGACAAAATACGATTCAGA+AGG | + | chr1_1:26135819-26135838 | Msa0015930:CDS | 40.0% | |
GCCAAATCTATGTCGATGAT+TGG | - | chr1_1:26135972-26135991 | None:intergenic | 40.0% | |
ATTCAAGATGTGGGAAGATG+AGG | + | chr1_1:26136016-26136035 | Msa0015930:CDS | 40.0% | |
TTAGGAGGATCATCACTCTT+TGG | - | chr1_1:26136191-26136210 | None:intergenic | 40.0% | |
TTGATCAATGCATGACACTC+CGG | - | chr1_1:26136291-26136310 | None:intergenic | 40.0% | |
TGAGTGAGACATGTAGGGAA+AGG | + | chr1_1:26133224-26133243 | Msa0015930:five_prime_UTR | 45.0% | |
ACACATATCTCAACCGAGAC+AGG | - | chr1_1:26133494-26133513 | None:intergenic | 45.0% | |
ATTAGCCGACCCAAATTAGC+AGG | + | chr1_1:26133601-26133620 | Msa0015930:five_prime_UTR | 45.0% | |
TTAGCCGACCCAAATTAGCA+GGG | + | chr1_1:26133602-26133621 | Msa0015930:five_prime_UTR | 45.0% | |
TTCTCCCTGCTAATTTGGGT+CGG | - | chr1_1:26133609-26133628 | None:intergenic | 45.0% | |
TACAATCTCCACAACCCACT+TGG | - | chr1_1:26133695-26133714 | None:intergenic | 45.0% | |
GGTGTATGAAGGTGAAGTGA+AGG | + | chr1_1:26133725-26133744 | Msa0015930:five_prime_UTR | 45.0% | |
! | GGACCATAGTTTGGTTTAGG+AGG | + | chr1_1:26133789-26133808 | Msa0015930:CDS | 45.0% |
GTCCCTCCTAAACCAAACTA+TGG | - | chr1_1:26133795-26133814 | None:intergenic | 45.0% | |
TAGGAGGGACCTAAGAATTG+AGG | + | chr1_1:26133805-26133824 | Msa0015930:CDS | 45.0% | |
!! | GAGGAAGGACAGTTTTATCC+GGG | + | chr1_1:26133896-26133915 | Msa0015930:CDS | 45.0% |
TCACTGAAATCTCTTGGAGC+TGG | + | chr1_1:26133968-26133987 | Msa0015930:CDS | 45.0% | |
TGATCACGAACAAGTGAGAC+TGG | - | chr1_1:26134650-26134669 | None:intergenic | 45.0% | |
!!! | TTGTCACTTTTGCTCCAACC+TGG | - | chr1_1:26135078-26135097 | None:intergenic | 45.0% |
AGGTTGGAGCAAAAGTGACA+AGG | + | chr1_1:26135077-26135096 | Msa0015930:CDS | 45.0% | |
! | ATGTTTAAGGCTTGGAGGCT+AGG | + | chr1_1:26135420-26135439 | Msa0015930:CDS | 45.0% |
ATGCAGGAATGAGAGAGCTT+TGG | + | chr1_1:26135466-26135485 | Msa0015930:CDS | 45.0% | |
TGCAGGAATGAGAGAGCTTT+GGG | + | chr1_1:26135467-26135486 | Msa0015930:CDS | 45.0% | |
!! | TTGGGTTGGCAGTATATCTC+CGG | + | chr1_1:26135624-26135643 | Msa0015930:CDS | 45.0% |
AAGGCGAATACGTTCGTCAA+TGG | + | chr1_1:26135838-26135857 | Msa0015930:CDS | 45.0% | |
TCGTCAATGGCTACCTGAAT+TGG | + | chr1_1:26135851-26135870 | Msa0015930:CDS | 45.0% | |
GTTGGAATTCTCGCCAATTC+AGG | - | chr1_1:26135867-26135886 | None:intergenic | 45.0% | |
! | AGAGCATCAGGTGTAGAGTT+AGG | + | chr1_1:26135930-26135949 | Msa0015930:CDS | 45.0% |
CGATAAAGAGGATCGAGAAC+AGG | + | chr1_1:26136232-26136251 | Msa0015930:CDS | 45.0% | |
ACTGCTTGAACTCTGTCTCT+TGG | - | chr1_1:26136342-26136361 | None:intergenic | 45.0% | |
! | TCCCTCCTCTGGAGGTAATA+CGG | + | chr1_1:26133437-26133456 | Msa0015930:five_prime_UTR | 50.0% |
ACCGTATTACCTCCAGAGGA+GGG | - | chr1_1:26133441-26133460 | None:intergenic | 50.0% | |
AACCGTATTACCTCCAGAGG+AGG | - | chr1_1:26133442-26133461 | None:intergenic | 50.0% | |
TCGAACCGTATTACCTCCAG+AGG | - | chr1_1:26133445-26133464 | None:intergenic | 50.0% | |
TCTGGAGGTAATACGGTTCG+AGG | + | chr1_1:26133444-26133463 | Msa0015930:five_prime_UTR | 50.0% | |
GAATCGAACCTCAGACCTTG+AGG | + | chr1_1:26133626-26133645 | Msa0015930:five_prime_UTR | 50.0% | |
GGTCCCAAGTCAATACCATC+AGG | + | chr1_1:26133664-26133683 | Msa0015930:five_prime_UTR | 50.0% | |
TACCATCAGGCTAAGCCAAG+TGG | + | chr1_1:26133677-26133696 | Msa0015930:five_prime_UTR | 50.0% | |
ACCATCAGGCTAAGCCAAGT+GGG | + | chr1_1:26133678-26133697 | Msa0015930:five_prime_UTR | 50.0% | |
TGCATTAGCTGCTGCTGCAA+GGG | + | chr1_1:26133835-26133854 | Msa0015930:CDS | 50.0% | |
!! | TTTATCCGGGTAGAGTGTCG+AGG | + | chr1_1:26133909-26133928 | Msa0015930:CDS | 50.0% |
!! | GGGACTTGTTACATGAACCG+TGG | + | chr1_1:26134723-26134742 | Msa0015930:CDS | 50.0% |
TTAGCTAGAGCATGGTCTCC+AGG | + | chr1_1:26135057-26135076 | Msa0015930:CDS | 50.0% | |
TTAAGGCTTGGAGGCTAGGT+AGG | + | chr1_1:26135424-26135443 | Msa0015930:CDS | 50.0% | |
!! | TGGGTTGGCAGTATATCTCC+GGG | + | chr1_1:26135625-26135644 | Msa0015930:CDS | 50.0% |
TGGCGAGAATTCCAACTGAG+TGG | + | chr1_1:26135871-26135890 | Msa0015930:CDS | 50.0% | |
!! | GGATGATGGATCCACTCAGT+TGG | - | chr1_1:26135885-26135904 | None:intergenic | 50.0% |
CTGAGTGGATCCATCATCCA+TGG | + | chr1_1:26135886-26135905 | Msa0015930:CDS | 50.0% | |
GTGGTGCATTCCATGGATGA+TGG | - | chr1_1:26135899-26135918 | None:intergenic | 50.0% | |
ACAGTAGGTGGTGCATTCCA+TGG | - | chr1_1:26135906-26135925 | None:intergenic | 50.0% | |
GATGCTCTTAGCACAGTAGG+TGG | - | chr1_1:26135918-26135937 | None:intergenic | 50.0% | |
CCTGATGCTCTTAGCACAGT+AGG | - | chr1_1:26135921-26135940 | None:intergenic | 50.0% | |
!! | CCTACTGTGCTAAGAGCATC+AGG | + | chr1_1:26135918-26135937 | Msa0015930:CDS | 50.0% |
!! | CTTAGCAAGCGGACTGATAC+CGG | + | chr1_1:26136269-26136288 | Msa0015930:CDS | 50.0% |
TTGCCACATGTTCCCTCCTC+TGG | + | chr1_1:26133426-26133445 | Msa0015930:five_prime_UTR | 55.0% | |
TCGAACCTCAGACCTTGAGG+AGG | + | chr1_1:26133629-26133648 | Msa0015930:five_prime_UTR | 55.0% | |
! | TGAGAGTGTGCTCCTCCTCA+AGG | - | chr1_1:26133644-26133663 | None:intergenic | 55.0% |
! | TTGAGGAGGAGCACACTCTC+AGG | + | chr1_1:26133643-26133662 | Msa0015930:five_prime_UTR | 55.0% |
ACCCACTTGGCTTAGCCTGA+TGG | - | chr1_1:26133682-26133701 | None:intergenic | 55.0% | |
!! | AGGCTAAGCCAAGTGGGTTG+TGG | + | chr1_1:26133684-26133703 | Msa0015930:five_prime_UTR | 55.0% |
CTTGCAGCAGCAGCTAATGC+AGG | - | chr1_1:26133836-26133855 | None:intergenic | 55.0% | |
CTGCATTAGCTGCTGCTGCA+AGG | + | chr1_1:26133834-26133853 | Msa0015930:CDS | 55.0% | |
TTAGCTGCTGCTGCAAGGGA+TGG | + | chr1_1:26133839-26133858 | Msa0015930:CDS | 55.0% | |
CTAGAGCATGGTCTCCAGGT+TGG | + | chr1_1:26135061-26135080 | Msa0015930:CDS | 55.0% | |
! | GTTTTCCGTTCACCGTCGAG+AGG | + | chr1_1:26135349-26135368 | Msa0015930:CDS | 55.0% |
AATGGCCTCTCGACGGTGAA+CGG | - | chr1_1:26135357-26135376 | None:intergenic | 55.0% | |
!! | ATGAGAGAGCTTTGGGCGAC+CGG | + | chr1_1:26135474-26135493 | Msa0015930:CDS | 55.0% |
ATCTCCGGGAGCTTACCTGA+TGG | + | chr1_1:26135639-26135658 | Msa0015930:CDS | 55.0% | |
GTGACCATCAGGTAAGCTCC+CGG | - | chr1_1:26135646-26135665 | None:intergenic | 55.0% | |
CTGATGGTCACGAGCTTGAG+CGG | + | chr1_1:26135655-26135674 | Msa0015930:CDS | 55.0% | |
TTGAAGGACAAGGCTCCACG+CGG | + | chr1_1:26136119-26136138 | Msa0015930:CDS | 55.0% | |
! | CGGTATCAGTCCGCTTGCTA+AGG | - | chr1_1:26136271-26136290 | None:intergenic | 55.0% |
CCTCCAGAGGAGGGAACATG+TGG | - | chr1_1:26133432-26133451 | None:intergenic | 60.0% | |
CCACATGTTCCCTCCTCTGG+AGG | + | chr1_1:26133429-26133448 | Msa0015930:five_prime_UTR | 60.0% | |
GTGCTCCTCCTCAAGGTCTG+AGG | - | chr1_1:26133637-26133656 | None:intergenic | 60.0% | |
!! | ATCCGGGTAGAGTGTCGAGG+TGG | + | chr1_1:26133912-26133931 | Msa0015930:CDS | 60.0% |
CACCACCTCGACACTCTACC+CGG | - | chr1_1:26133917-26133936 | None:intergenic | 60.0% | |
ACCGTCGAGAGGCCATTGCT+AGG | + | chr1_1:26135360-26135379 | Msa0015930:CDS | 60.0% | |
CCCTAGCAATGGCCTCTCGA+CGG | - | chr1_1:26135364-26135383 | None:intergenic | 60.0% | |
CCGTCGAGAGGCCATTGCTA+GGG | + | chr1_1:26135361-26135380 | Msa0015930:CDS | 60.0% | |
GCTTGGAGGCTAGGTAGGAC+TGG | + | chr1_1:26135429-26135448 | Msa0015930:CDS | 60.0% | |
CGCTCAAGCTCGTGACCATC+AGG | - | chr1_1:26135657-26135676 | None:intergenic | 60.0% | |
TGGTCACGAGCTTGAGCGGT+TGG | + | chr1_1:26135659-26135678 | Msa0015930:CDS | 60.0% | |
TGAGCGGTTGGACGATCCAG+AGG | + | chr1_1:26135671-26135690 | Msa0015930:CDS | 60.0% | |
!! | CGGGTAGAGTGTCGAGGTGG+TGG | + | chr1_1:26133915-26133934 | Msa0015930:CDS | 65.0% |
!! | GAGAGCTTTGGGCGACCGGA+TGG | + | chr1_1:26135478-26135497 | Msa0015930:CDS | 65.0% |
GACGAAGAAGTAGCGCCGCG+TGG | - | chr1_1:26136137-26136156 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 26132864 | 26136504 | 26132864 | ID=Msa0015930;Name=Msa0015930 |
chr1_1 | mRNA | 26132864 | 26136504 | 26132864 | ID=Msa0015930-mRNA-1;Parent=Msa0015930;Name=Msa0015930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=897|1|1|1|1|1|4|122|607 |
chr1_1 | exon | 26132864 | 26134085 | 26132864 | ID=Msa0015930-mRNA-1:exon:8899;Parent=Msa0015930-mRNA-1 |
chr1_1 | exon | 26134645 | 26134866 | 26134645 | ID=Msa0015930-mRNA-1:exon:8900;Parent=Msa0015930-mRNA-1 |
chr1_1 | exon | 26134986 | 26135692 | 26134986 | ID=Msa0015930-mRNA-1:exon:8901;Parent=Msa0015930-mRNA-1 |
chr1_1 | exon | 26135813 | 26136504 | 26135813 | ID=Msa0015930-mRNA-1:exon:8902;Parent=Msa0015930-mRNA-1 |
chr1_1 | five_prime_UTR | 26132864 | 26133760 | 26132864 | ID=Msa0015930-mRNA-1:five_prime_utr;Parent=Msa0015930-mRNA-1 |
chr1_1 | CDS | 26133761 | 26134085 | 26133761 | ID=Msa0015930-mRNA-1:cds;Parent=Msa0015930-mRNA-1 |
chr1_1 | CDS | 26134645 | 26134866 | 26134645 | ID=Msa0015930-mRNA-1:cds;Parent=Msa0015930-mRNA-1 |
chr1_1 | CDS | 26134986 | 26135692 | 26134986 | ID=Msa0015930-mRNA-1:cds;Parent=Msa0015930-mRNA-1 |
chr1_1 | CDS | 26135813 | 26136382 | 26135813 | ID=Msa0015930-mRNA-1:cds;Parent=Msa0015930-mRNA-1 |
chr1_1 | three_prime_UTR | 26136383 | 26136504 | 26136383 | ID=Msa0015930-mRNA-1:three_prime_utr;Parent=Msa0015930-mRNA-1 |
Gene Sequence |
Protein sequence |