AlfalfaGEDB | Msa0060630

M. sativa cultivar zhongmu-4 / Msa0060630

KEGG: K09500
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005911 GO:0006457 GO:0006458 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0030054 GO:0032879 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051082 GO:0055044 GO:0061077 GO:0065007 GO:0101031
PFAM: PF00118.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060630	XP_013466502.1	92.265	543	1	2	1	502	1	543	0.0	1002

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060630	sp\|Q94K05\|TCPQ_ARATH	76.779	534	80	3	1	490	1	534	0.0	840

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060630	A0A072VGH7	92.265	543	1	2	1	502	1	543	0.0	1002

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016540	Msa0060630	0.801969	7.005143e-49	-8.615850e-47
Msa0060630	Msa0130110	0.800255	1.570189e-48	-8.615850e-47
Msa0060630	Msa0225480	0.818475	1.923069e-52	-8.615850e-47
Msa0060630	Msa0241830	0.813200	2.887059e-51	-8.615850e-47
Msa0060630	Msa0296250	0.802338	5.881698e-49	-8.615850e-47
Msa0060630	Msa0322900	0.804783	1.830268e-49	-8.615850e-47
Msa0060630	Msa0430230	0.810920	9.066023e-51	-8.615850e-47
Msa0060630	Msa0513370	0.812244	4.673859e-51	-8.615850e-47
Msa0060630	Msa0626270	0.800253	1.572044e-48	-8.615850e-47
Msa0060630	Msa1127590	0.802073	6.670948e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060630	MtrunA17_Chr1g0160221	92.265	543	1	2	1	502	1	543	0.0	1002
Msa0060630	MtrunA17_Chr6g0461541	84.104	541	43	4	4	502	1	540	0.0	901
Msa0060630	MtrunA17_Chr2g0282161	26.245	522	320	13	29	492	24	538	2.56e-53	188
Msa0060630	MtrunA17_Chr8g0380331	27.853	517	306	11	28	482	23	534	1.33e-50	181
Msa0060630	MtrunA17_Chr5g0440381	25.382	524	331	12	11	482	11	526	2.55e-47	172
Msa0060630	MtrunA17_Chr3g0123341	24.612	516	340	8	13	482	18	530	1.95e-39	150
Msa0060630	MtrunA17_Chr7g0241881	27.015	459	308	9	47	486	70	520	6.35e-38	145
Msa0060630	MtrunA17_Chr7g0272821	27.015	459	308	10	47	486	70	520	1.52e-37	144
Msa0060630	MtrunA17_Chr3g0139481	23.969	509	285	7	23	485	23	475	1.75e-34	135
Msa0060630	MtrunA17_Chr7g0214841	22.780	518	334	11	25	484	18	527	1.23e-28	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060630	AT3G03960.1	76.779	534	80	3	1	490	1	534	0.0	840
Msa0060630	AT3G18190.1	25.394	508	324	7	29	485	33	536	1.19e-50	181
Msa0060630	AT3G20050.1	27.466	517	308	11	28	482	23	534	3.74e-50	180
Msa0060630	AT5G26360.1	25.856	526	317	13	29	492	24	538	1.67e-49	178
Msa0060630	AT3G11830.1	25.758	528	324	14	11	482	11	526	5.15e-47	172
Msa0060630	AT3G11830.2	26.046	526	323	15	11	482	11	524	8.52e-46	168
Msa0060630	AT1G24510.1	24.621	528	344	10	3	482	9	530	1.45e-39	150
Msa0060630	AT1G24510.2	24.615	455	322	6	47	482	2	454	8.12e-39	147
Msa0060630	AT1G24510.3	24.615	455	322	6	47	482	25	477	1.48e-38	147
Msa0060630	AT5G20890.1	25.602	457	317	8	47	486	70	520	1.15e-35	139

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Find 127 sgRNAs with CRISPR-Local

Find 598 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAAATCTTAGCAGC+AGG	0.535365	1_2:-18412328	None:intergenic
AAAATGGTGGGTTTACCTTA+TGG	0.271750	1_2:+18411391	Msa0060630:exon
AAACCCTGTAAACTTTAATG+TGG	0.581302	1_2:+18413639	Msa0060630:CDS
AAAGAGAATGGAAAAGGCAA+AGG	0.588239	1_2:+18413756	Msa0060630:CDS
AAAGCTCAACAAGAGGAAAT+TGG	0.382605	1_2:+18412358	Msa0060630:CDS
AAATAACTTGCTCCTTGTCA+CGG	0.594985	1_2:-18413429	None:intergenic
AAATTATTCGAAAACTGAAG+AGG	0.610195	1_2:+18415947	Msa0060630:CDS
AACCTAACAAACCTTAGCAA+TGG	0.596276	1_2:-18412491	None:intergenic
AAGTAATTTACTTAGCCATG+TGG	0.643526	1_2:-18417970	None:intergenic
AATATTGGACGAACTTGTTG+AGG	0.552189	1_2:+18413384	Msa0060630:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAATGAGAATGTGAAGTT+AGG	-	chr1_2:18411549-18411568	None:intergenic	30.0%
CCTAGATCACAAAATAAACT+TGG	-	chr1_2:18411624-18411643	None:intergenic	30.0%
GTTATTAGGGATGAATAAGA+TGG	+	chr1_2:18412231-18412250	Msa0060630:intron	30.0%
TCATTTCGATTGATCCAAAA+TGG	+	chr1_2:18412521-18412540	Msa0060630:intron	30.0%
TTTCTACTGTTCTCAACTAA+AGG	+	chr1_2:18412624-18412643	Msa0060630:intron	30.0%
AAGATAGGATGACTGAAATA+TGG	+	chr1_2:18412865-18412884	Msa0060630:intron	30.0%
GCCTTATAAAATTAAACGAG+GGG	+	chr1_2:18413150-18413169	Msa0060630:intron	30.0%
GTTCAAATTTCAAAGTTGGA+AGG	-	chr1_2:18413210-18413229	None:intergenic	30.0%
CTTTATCCTATTTCAGACTA+TGG	+	chr1_2:18413360-18413379	Msa0060630:intron	30.0%
AAACCCTGTAAACTTTAATG+TGG	+	chr1_2:18413639-18413658	Msa0060630:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	18411258	18419993	18411258	ID=Msa0060630;Name=Msa0060630
chr1_2	mRNA	18411258	18419993	18411258	ID=Msa0060630-mRNA-1;Parent=Msa0060630;Name=Msa0060630-mRNA-1;_AED=0.10;_eAED=0.10;_QI=136\|0.83\|0.84\|1\|1\|1\|13\|398\|502
chr1_2	exon	18411258	18411535	18411258	ID=Msa0060630-mRNA-1:exon:7153;Parent=Msa0060630-mRNA-1
chr1_2	exon	18412320	18412501	18412320	ID=Msa0060630-mRNA-1:exon:7154;Parent=Msa0060630-mRNA-1
chr1_2	exon	18413376	18413522	18413376	ID=Msa0060630-mRNA-1:exon:7155;Parent=Msa0060630-mRNA-1
chr1_2	exon	18413616	18413777	18413616	ID=Msa0060630-mRNA-1:exon:7156;Parent=Msa0060630-mRNA-1
chr1_2	exon	18414785	18414862	18414785	ID=Msa0060630-mRNA-1:exon:7157;Parent=Msa0060630-mRNA-1
chr1_2	exon	18415942	18416075	18415942	ID=Msa0060630-mRNA-1:exon:7158;Parent=Msa0060630-mRNA-1
chr1_2	exon	18416232	18416304	18416232	ID=Msa0060630-mRNA-1:exon:7159;Parent=Msa0060630-mRNA-1
chr1_2	exon	18416386	18416463	18416386	ID=Msa0060630-mRNA-1:exon:7160;Parent=Msa0060630-mRNA-1
chr1_2	exon	18416592	18416714	18416592	ID=Msa0060630-mRNA-1:exon:7161;Parent=Msa0060630-mRNA-1
chr1_2	exon	18416913	18416965	18416913	ID=Msa0060630-mRNA-1:exon:7162;Parent=Msa0060630-mRNA-1
chr1_2	exon	18417772	18417981	18417772	ID=Msa0060630-mRNA-1:exon:7163;Parent=Msa0060630-mRNA-1
chr1_2	exon	18418238	18418295	18418238	ID=Msa0060630-mRNA-1:exon:7164;Parent=Msa0060630-mRNA-1
chr1_2	exon	18419527	18419993	18419527	ID=Msa0060630-mRNA-1:exon:7165;Parent=Msa0060630-mRNA-1
chr1_2	five_prime_UTR	18411258	18411393	18411258	ID=Msa0060630-mRNA-1:five_prime_utr;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18411394	18411535	18411394	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18412320	18412501	18412320	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18413376	18413522	18413376	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18413616	18413777	18413616	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18414785	18414862	18414785	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18415942	18416075	18415942	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18416232	18416304	18416232	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18416386	18416463	18416386	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18416592	18416714	18416592	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18416913	18416965	18416913	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18417772	18417981	18417772	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18418238	18418295	18418238	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	CDS	18419527	18419595	18419527	ID=Msa0060630-mRNA-1:cds;Parent=Msa0060630-mRNA-1
chr1_2	three_prime_UTR	18419596	18419993	18419596	ID=Msa0060630-mRNA-1:three_prime_utr;Parent=Msa0060630-mRNA-1

Gene Sequence

>Msa0060630

ATGGTGGGTTTACCTTATGGAATCCAATCTATGCTCAAAGAAGGTCACAAACATCTCTCTGGTCTCGACGAAGCCGTTCTCAAAAACATCGATGCTTGTAACCAACTCTCCACTATCACTCGCACTTCTCTCGGTCCCAATGTACAACATCCTGCTGCTAAGATTTTGGTTTTGGCTGGGAAAGCTCAACAAGAGGAAATTGGTGATGGCGCTAATTTAACTATTTCTTTTGCCGGCGAGTTACTTCATGGTGCTGAAGAGCTTATTAGGATGGGTTTGCATCCTAGTGAGATTATCAGTGGATATACCAAAGCCATTGCTAAGACTATGGAAATATTGGACGAACTTGTTGAGGAAGGTTCCGACAATATGGATGTCCGTGACAAGGAGCAAGTTATTTCTCGAATGAAAGCTGCTGTTGCTAGCAAGCAATTCGGTCAAGAAGATACTATCTGCTCTCTTGTCGCTGATGCATGCATCCAAGTGTGTCCAAAAAACCCTGTAAACTTTAATGTGGACAATGTTCGTGTCGCAAAGCTCTTAGGAGGAGGCTTGCGTAATAGTACAGTTGTTCGGGGAATGGTTCTGAGAAATGATGCTGTTGGTAGCATAAAGAGAATGGAAAAGGCAAAGGTTGCTGTGTTTGCTGGTGGTGTTGATACATCTGCAACTGAAACTAAAGGAACTGTTCTCATACATTCTGCTGAACAGCTAGAAAATTATTCGAAAACTGAAGAGGCTAAAGTAGAAGAGCTCATCAAGGCTGTAGTTGATTCTGGTGCCCAAGTGATTGTAAGCGGAGGAGCAGTAGGAGAGATGGCTTTGCATTTCTGTGAGCGTTATAAGCTTATGGTTCTGAAAATCAGCTCTAAGTTTGAACTGCGTCGATTTTGCCGTACAACTGGTTCTGTAGCTATGTTGAAGCTTAGTCGACCAAACCCAGATGATCTTGGATATGTTGATTCTGTTTCAGTTGAGGAAATTGGTGGTGCAAGGGTGACCATTGTTAAAAATGAAGAAGGTGGCAATTCTGTAGCAACTGTTGTCTTAAGAGGAAGTACTGATAGTATACTTGATGATATTGAAAGAGCAGTTGATGATGGAGTGAACACTTACAAGACTATGTGCAGGGATAGCCGTATTGTGCCTGGAGCTGCAGCAACTGAAATTGAATTGGATCAGTATGCTATAGCAAAATTTGCTGAAAGCTTTGAGATGATTCCTAGAACATTGGCGGAGAATGCTGGGCTAAATGCAATGGAGATTATATCTTCTCTCTACGCAGAACATGCATCAGGAAACGCGAAAGTTGGCATTGATTTGGACGAGGGTGTTTGTAAGGATGTCACAACCACACATGTTTGGGATCTCCACATGGCTAAGCTTTTTGCTCTTAAATACGCTGCTGATGCTGCATGCACTGTGCTACGGGTGGACCAGATTATTATGGCGAAACCGGCTGGGGGACCTGGCAAGAGAGAGCAACCTGCTGGCATGGACGAAGACTAA

Protein sequence

>Msa0060630

MVGLPYGIQSMLKEGHKHLSGLDEAVLKNIDACNQLSTITRTSLGPNVQHPAAKILVLAGKAQQEEIGDGANLTISFAGELLHGAEELIRMGLHPSEIISGYTKAIAKTMEILDELVEEGSDNMDVRDKEQVISRMKAAVASKQFGQEDTICSLVADACIQVCPKNPVNFNVDNVRVAKLLGGGLRNSTVVRGMVLRNDAVGSIKRMEKAKVAVFAGGVDTSATETKGTVLIHSAEQLENYSKTEEAKVEELIKAVVDSGAQVIVSGGAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGSVAMLKLSRPNPDDLGYVDSVSVEEIGGARVTIVKNEEGGNSVATVVLRGSTDSILDDIERAVDDGVNTYKTMCRDSRIVPGAAATEIELDQYAIAKFAESFEMIPRTLAENAGLNAMEIISSLYAEHASGNAKVGIDLDEGVCKDVTTTHVWDLHMAKLFALKYAADAACTVLRVDQIIMAKPAGGPGKREQPAGMDED*