AlfalfaGEDB | Msa0130110

M. sativa cultivar zhongmu-4 / Msa0130110

KEGG: K20285
GO: GO:0000062 GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006869 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0010033 GO:0010876 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700
PFAM: PF01344.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0130110	XP_013469288.1	96.838	506	16	0	50	555	1	506	0.0	1023

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0130110	sp\|Q9MA55\|ACBP4_ARATH	45.491	499	257	4	61	552	168	658	2.29e-157	468

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0130110	A0A072VNX4	96.838	506	16	0	50	555	1	506	0.0	1023

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa0130110	0.821740	3.437751e-53	-8.615850e-47
Msa0002680	Msa0130110	0.822812	1.938791e-53	-8.615850e-47
Msa0003220	Msa0130110	0.803374	3.594782e-49	-8.615850e-47
Msa0004540	Msa0130110	0.815456	9.158729e-52	-8.615850e-47
Msa0007970	Msa0130110	0.811446	6.974099e-51	-8.615850e-47
Msa0012940	Msa0130110	0.872355	3.388754e-67	-8.615850e-47
Msa0016540	Msa0130110	0.862952	3.518653e-64	-8.615850e-47
Msa0024710	Msa0130110	0.821234	4.499843e-53	-8.615850e-47
Msa0027820	Msa0130110	0.817546	3.117512e-52	-8.615850e-47
Msa0031820	Msa0130110	0.817521	3.158527e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0130110	MtrunA17_Chr1g0197401	96.838	506	16	0	50	555	1	506	0.0	1023
Msa0130110	MtrunA17_Chr7g0272641	44.112	501	255	4	61	552	171	655	6.67e-154	456
Msa0130110	MtrunA17_Chr4g0066851	37.261	314	194	1	62	375	82	392	1.10e-66	229
Msa0130110	MtrunA17_Chr2g0286241	34.891	321	206	1	62	382	74	391	7.97e-65	224
Msa0130110	MtrunA17_Chr2g0286241	25.000	292	175	11	91	363	1	267	2.91e-11	66.2
Msa0130110	MtrunA17_Chr1g0192821	30.031	323	201	11	64	380	15	318	1.70e-35	141
Msa0130110	MtrunA17_Chr4g0061581	27.574	272	166	9	71	328	19	273	8.88e-28	117
Msa0130110	MtrunA17_Chr4g0061581	29.070	258	162	5	64	312	65	310	2.34e-25	110
Msa0130110	MtrunA17_Chr4g0061581	25.221	226	132	5	64	271	115	321	1.76e-15	79.7
Msa0130110	MtrunA17_Chr4g0074871	30.769	143	97	2	169	310	315	456	1.17e-15	80.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0130110	AT5G04420.2	60.465	516	192	4	44	551	2	513	0.0	622
Msa0130110	AT5G04420.1	60.465	516	192	4	44	551	2	513	0.0	622
Msa0130110	AT5G04420.3	60.465	516	192	4	44	551	2	513	0.0	622
Msa0130110	AT3G05420.1	45.491	499	257	4	61	552	168	658	2.33e-158	468
Msa0130110	AT3G05420.2	45.491	499	257	4	61	552	169	659	2.37e-158	468
Msa0130110	AT5G27630.3	44.200	500	265	4	61	552	169	662	3.03e-154	457
Msa0130110	AT5G27630.4	44.309	492	262	3	61	552	169	648	3.22e-152	451
Msa0130110	AT5G27630.1	44.512	492	255	4	61	552	169	642	9.21e-152	450
Msa0130110	AT5G27630.2	46.400	375	192	2	61	427	169	542	3.19e-123	374
Msa0130110	AT5G18590.2	34.132	334	210	2	46	372	41	371	1.52e-58	207

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Find 135 sgRNAs with CRISPR-Local

Find 501 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCCACTTTCTAGCG+AGG	0.614138	1_3:-60161889	Msa0130110:intron
AAACCTTATAGCGAGCAGGT+GGG	0.714483	1_3:+60165234	None:intergenic
AAAGGAGAATCAGAGAGAAA+TGG	0.438995	1_3:-60165324	Msa0130110:CDS
AAATAAACCTTATAGCGAGC+AGG	0.536488	1_3:+60165230	None:intergenic
AAATGTCAATAACAGAAGTC+AGG	0.479233	1_3:-60160041	Msa0130110:CDS
AAATTTCTGCAGATTAGGTG+GGG	0.587248	1_3:-60164592	Msa0130110:intron
AACAGGTATTCCTGGACAAA+AGG	0.485327	1_3:-60165342	Msa0130110:CDS
AACAGGTTGCCCTGAAACCC+TGG	0.483820	1_3:-60161961	Msa0130110:intron
AACTCCAAAATCACTTTAAG+TGG	0.454233	1_3:+60159534	None:intergenic
AAGAAAATGAGAAAAGATAT+AGG	0.450388	1_3:-60166407	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGTAGAAGGAAGAAAAA+AGG	-	chr1_3:60159214-60159233	Msa0130110:three_prime_UTR	30.0%
AGTGTAGAAGGAAGAAAAAA+GGG	-	chr1_3:60159215-60159234	Msa0130110:three_prime_UTR	30.0%
GAAATACAAGTATAAGGCTA+TGG	-	chr1_3:60159268-60159287	Msa0130110:three_prime_UTR	30.0%
GAAGATAAAAAACCAAGTTG+TGG	+	chr1_3:60159335-60159354	None:intergenic	30.0%
TTCTTCTTACGAGACATTAT+TGG	-	chr1_3:60159352-60159371	Msa0130110:three_prime_UTR	30.0%
ATGACTTATATTCACTCTTG+CGG	-	chr1_3:60159785-60159804	Msa0130110:intron	30.0%
AGAAAGAACACATACAATCA+TGG	+	chr1_3:60160080-60160099	None:intergenic	30.0%
GCATACATGTAATTCATGAT+TGG	-	chr1_3:60160426-60160445	Msa0130110:intron	30.0%
ACATGTAATTCATGATTGGT+TGG	-	chr1_3:60160430-60160449	Msa0130110:intron	30.0%
TACATGATTTAGTTGTTTGC+AGG	-	chr1_3:60160704-60160723	Msa0130110:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	60159163	60166423	60159163	ID=Msa0130110;Name=Msa0130110
chr1_3	mRNA	60159163	60166423	60159163	ID=Msa0130110-mRNA-1;Parent=Msa0130110;Name=Msa0130110-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.92\|0.85\|0.92\|1\|1\|14\|411\|555
chr1_3	exon	60159163	60159747	60159163	ID=Msa0130110-mRNA-1:exon:19779;Parent=Msa0130110-mRNA-1
chr1_3	exon	60159834	60159893	60159834	ID=Msa0130110-mRNA-1:exon:19778;Parent=Msa0130110-mRNA-1
chr1_3	exon	60159975	60160295	60159975	ID=Msa0130110-mRNA-1:exon:19777;Parent=Msa0130110-mRNA-1
chr1_3	exon	60161161	60161244	60161161	ID=Msa0130110-mRNA-1:exon:19776;Parent=Msa0130110-mRNA-1
chr1_3	exon	60161890	60161978	60161890	ID=Msa0130110-mRNA-1:exon:19775;Parent=Msa0130110-mRNA-1
chr1_3	exon	60162388	60162502	60162388	ID=Msa0130110-mRNA-1:exon:19774;Parent=Msa0130110-mRNA-1
chr1_3	exon	60163622	60163748	60163622	ID=Msa0130110-mRNA-1:exon:19773;Parent=Msa0130110-mRNA-1
chr1_3	exon	60163839	60163978	60163839	ID=Msa0130110-mRNA-1:exon:19772;Parent=Msa0130110-mRNA-1
chr1_3	exon	60164327	60164388	60164327	ID=Msa0130110-mRNA-1:exon:19771;Parent=Msa0130110-mRNA-1
chr1_3	exon	60164536	60164602	60164536	ID=Msa0130110-mRNA-1:exon:19770;Parent=Msa0130110-mRNA-1
chr1_3	exon	60164747	60164860	60164747	ID=Msa0130110-mRNA-1:exon:19769;Parent=Msa0130110-mRNA-1
chr1_3	exon	60164933	60165010	60164933	ID=Msa0130110-mRNA-1:exon:19768;Parent=Msa0130110-mRNA-1
chr1_3	exon	60165238	60165396	60165238	ID=Msa0130110-mRNA-1:exon:19767;Parent=Msa0130110-mRNA-1
chr1_3	exon	60166346	60166423	60166346	ID=Msa0130110-mRNA-1:exon:19766;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60166346	60166423	60166346	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60165238	60165396	60165238	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60164933	60165010	60164933	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60164747	60164860	60164747	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60164536	60164602	60164536	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60164327	60164388	60164327	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60163839	60163978	60163839	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60163622	60163748	60163622	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60162388	60162502	60162388	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60161890	60161978	60161890	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60161161	60161244	60161161	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60159975	60160295	60159975	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60159834	60159893	60159834	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	CDS	60159574	60159747	60159574	ID=Msa0130110-mRNA-1:cds;Parent=Msa0130110-mRNA-1
chr1_3	three_prime_UTR	60159163	60159573	60159163	ID=Msa0130110-mRNA-1:three_prime_utr;Parent=Msa0130110-mRNA-1

Gene Sequence

>Msa0130110

ATGAGAAAAGATATAGGAGTTTTGTTCAGAAGTTGCAAAGTTGATGAAGAGAAGTGTAGAAGGAAGAAAAAAGGGAGGCCTGAAGTGACAATCAAGGTGATCCGTACTGCAACAGGTATTCCTGGACAAAAGGAGAATCAGAGAGAAATGGAAGTCAACAATTGGCATAAAGAACTTACATATGATAATTGGGTACCTATTACTGTAACTGGTGCACGCCCACCTGCTCGCTATAAGCATGCAGCGGCAGTAGTTGATGAAAAATTATACATTTTCGGTGGAAGTCGTAATGGTCGGCATTTATCGGATGTTCAGGTTTTTGACTTCAGAAGTTTGACGTGGTCTTCTCTAAAGCTAAAAGCTGATACTGGAAAAGATAATGGCAACAGTTCACAGGAGAATCTGCCTGCCACATCTGGTCACAATATGATTAGGTGGGGGGAGAAACTACTTATTCTTGGTGGCAGTTCAAGGGACACTTCTGATACTTTAACAGTTCAATACATTGACATTGAAACATGCCAGTTTGGAGTTATTAAGACTTCTGGAAGTGTTCCGGTAGCCCGTGTGGGACAGTCTGCAACACTGGTTGGTTCAAGAGTTATATTGTTTGCTGGTGAAGATAGGAGAAGGAAGCTGTTGAATGATGTCCATGTTCTCGATCTTGAAAGTATGACTTGGGATGTGATAAAGACTTCGCAGACACCTCCAGCTCCTAGATATGATCATGCAGCTGCTATACATGGAGAACGGTACCTTATGATTTTTGGTGGTTGCTCTCATTCTGTCTTCTTCAATGATCTACACCTATTAGACTTGCAAACTATGGAATGGTCCCAACCACAATCTCAAGGTGATTTAGTATCTCCCAGGGCTGGACATGCTGGTATCACTATTGATGAAAGCTGGTTCATAGTTGGTGGTGGCGATAACAAAAATGGTTGCCCTGAAACCCTGGTCTTAAACATGTCCAAACTTGTTTGGTCAGTTTTGAATGTTGTGAAGCAAAAAGATCCACTTTCTAGCGAGGGTCTTAGTGTCTGCTCAGGACTGATTGATGGTGAAACATATCTGTTTGCTTTTGGTGGCTACAATGGGAGGTATAGCAATGAGGTTTTTGTTTTGAGACCCAAGGCAAAGGACACTTTGCGTCCCAAGATTTTCCAGTCACCGGCTGCTGCAGCCGCTGCAGCTTCTGTTTCTTCTGCGTATGCATTGTCTAAATCTGAGAAGTTGGATTTCATGCAACTGGATGATATAAATCCCAAGTCATCTGTAAATGGTCATCATCAAAGTGATGTCACGATTATAATTGAAGCCATTAAAGAAGAAAAGAGATTATTGGAAATGTCAATAACAGAAGTCAGGGCCGAAAATTCTAAGCTTGAAGGTGAGATACATGAAGTAAATAATAATCATGCTGAATTGACCAAGGAACTCCAATCAGTCCAGGGACAACTTGTGGCAGAGAGATCAAGATGCTTTAACCTGGAGGCCAAAATTACAGAACTCCAAAAATTGTTGGAATCAATGCAGTCTGTGGAAGATCAGGTACAGGCTCTTCGGCAAAAGAAGTCTGCTTTTGACCAGGAGATGGAGCACGCTGCAACTGCTCAGAGGCAGAGTTCTGGTGGAGTTTGGCGATTGTTTGGTGGGGGTGAAAAATGA

Protein sequence

>Msa0130110

MRKDIGVLFRSCKVDEEKCRRKKKGRPEVTIKVIRTATGIPGQKENQREMEVNNWHKELTYDNWVPITVTGARPPARYKHAAAVVDEKLYIFGGSRNGRHLSDVQVFDFRSLTWSSLKLKADTGKDNGNSSQENLPATSGHNMIRWGEKLLILGGSSRDTSDTLTVQYIDIETCQFGVIKTSGSVPVARVGQSATLVGSRVILFAGEDRRRKLLNDVHVLDLESMTWDVIKTSQTPPAPRYDHAAAIHGERYLMIFGGCSHSVFFNDLHLLDLQTMEWSQPQSQGDLVSPRAGHAGITIDESWFIVGGGDNKNGCPETLVLNMSKLVWSVLNVVKQKDPLSSEGLSVCSGLIDGETYLFAFGGYNGRYSNEVFVLRPKAKDTLRPKIFQSPAAAAAAASVSSAYALSKSEKLDFMQLDDINPKSSVNGHHQSDVTIIIEAIKEEKRLLEMSITEVRAENSKLEGEIHEVNNNHAELTKELQSVQGQLVAERSRCFNLEAKITELQKLLESMQSVEDQVQALRQKKSAFDQEMEHAATAQRQSSGGVWRLFGGGEK*