Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162140 | XP_024632998.1 | 96.284 | 296 | 11 | 0 | 1 | 296 | 19 | 314 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162140 | A0A396JXC2 | 96.284 | 296 | 11 | 0 | 1 | 296 | 57 | 352 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022470 | Msa0162140 | 0.814391 | 1.578268e-51 | -8.615850e-47 |
| Msa0023060 | Msa0162140 | 0.904517 | 1.130051e-79 | -8.615850e-47 |
| Msa0051960 | Msa0162140 | 0.801967 | 7.011859e-49 | -8.615850e-47 |
| Msa0070930 | Msa0162140 | 0.843111 | 1.713217e-58 | -8.615850e-47 |
| Msa0090380 | Msa0162140 | 0.805929 | 1.052771e-49 | -8.615850e-47 |
| Msa0094710 | Msa0162140 | 0.802352 | 5.844260e-49 | -8.615850e-47 |
| Msa0101960 | Msa0162140 | 0.806948 | 6.418210e-50 | -8.615850e-47 |
| Msa0137560 | Msa0162140 | 0.800513 | 1.391610e-48 | -8.615850e-47 |
| Msa0137860 | Msa0162140 | 0.810890 | 9.206230e-51 | -8.615850e-47 |
| Msa0162140 | Msa0257910 | 0.813773 | 2.159579e-51 | -8.615850e-47 |
| Msa0162140 | Msa0265270 | 0.803050 | 4.194058e-49 | -8.615850e-47 |
| Msa0162140 | Msa0296910 | 0.814663 | 1.373473e-51 | -8.615850e-47 |
| Msa0162140 | Msa0335070 | 0.823263 | 1.521468e-53 | -8.615850e-47 |
| Msa0162140 | Msa0374870 | 0.810104 | 1.360930e-50 | -8.615850e-47 |
| Msa0162140 | Msa0387040 | 0.805618 | 1.223751e-49 | -8.615850e-47 |
| Msa0162140 | Msa0588710 | 0.825245 | 5.206667e-54 | -8.615850e-47 |
| Msa0162140 | Msa0592650 | 0.817843 | 2.672364e-52 | -8.615850e-47 |
| Msa0162140 | Msa0632650 | 0.803108 | 4.079899e-49 | -8.615850e-47 |
| Msa0162140 | Msa0635270 | 0.814581 | 1.432327e-51 | -8.615850e-47 |
| Msa0162140 | Msa0753930 | 0.800519 | 1.387582e-48 | -8.615850e-47 |
| Msa0162140 | Msa0788660 | 0.819269 | 1.269101e-52 | -8.615850e-47 |
| Msa0162140 | Msa0945130 | 0.801317 | 9.533928e-49 | -8.615850e-47 |
| Msa0162140 | Msa1011250 | 0.805343 | 1.397345e-49 | -8.615850e-47 |
| Msa0162140 | Msa1059670 | 0.801279 | 9.704629e-49 | -8.615850e-47 |
| Msa0162140 | Msa1089190 | 0.804702 | 1.902707e-49 | -8.615850e-47 |
| Msa0162140 | Msa1131790 | 0.818854 | 1.577599e-52 | -8.615850e-47 |
| Msa0162140 | Msa1208990 | 0.804187 | 2.436381e-49 | -8.615850e-47 |
| Msa0162140 | Msa1231710 | 0.810428 | 1.158286e-50 | -8.615850e-47 |
| Msa0162140 | Msa1246780 | 0.807241 | 5.563535e-50 | -8.615850e-47 |
| Msa0162140 | Msa1246790 | 0.838084 | 3.548537e-57 | -8.615850e-47 |
| Msa0162140 | Msa1256060 | 0.816786 | 4.620223e-52 | -8.615850e-47 |
| Msa0162140 | Msa1286210 | 0.800253 | 1.571951e-48 | -8.615850e-47 |
| Msa0162140 | Msa1312440 | 0.830816 | 2.372630e-55 | -8.615850e-47 |
| Msa0162140 | Msa1315460 | 0.804934 | 1.702291e-49 | -8.615850e-47 |
| Msa0162140 | Msa1364080 | 0.804809 | 1.807432e-49 | -8.615850e-47 |
| Msa0162140 | Msa1433410 | 0.810377 | 1.188209e-50 | -8.615850e-47 |
| Msa0162140 | Msa1447880 | 0.817661 | 2.936858e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162140 | MtrunA17_Chr1g0176331 | 96.284 | 296 | 11 | 0 | 1 | 296 | 57 | 352 | 0.0 | 593 |
| Msa0162140 | MtrunA17_Chr7g0268251 | 32.372 | 312 | 178 | 5 | 10 | 295 | 73 | 377 | 5.42e-51 | 172 |
| Msa0162140 | MtrunA17_Chr1g0166871 | 31.690 | 284 | 146 | 8 | 10 | 292 | 72 | 308 | 1.80e-38 | 137 |
| Msa0162140 | MtrunA17_Chr8g0338771 | 32.765 | 293 | 146 | 10 | 11 | 268 | 75 | 351 | 2.15e-37 | 136 |
| Msa0162140 | MtrunA17_Chr7g0268221 | 41.958 | 143 | 80 | 2 | 150 | 292 | 9 | 148 | 2.68e-32 | 117 |
| Msa0162140 | MtrunA17_Chr7g0268231 | 44.275 | 131 | 70 | 2 | 164 | 294 | 7 | 134 | 5.64e-28 | 105 |
| Msa0162140 | MtrunA17_Chr2g0294801 | 30.769 | 182 | 116 | 3 | 98 | 279 | 84 | 255 | 1.63e-23 | 97.1 |
| Msa0162140 | MtrunA17_Chr7g0268201 | 39.362 | 94 | 56 | 1 | 201 | 294 | 9 | 101 | 1.14e-14 | 68.6 |
| Msa0162140 | MtrunA17_Chr3g0119031 | 43.590 | 78 | 42 | 2 | 2 | 77 | 104 | 181 | 3.63e-11 | 63.9 |
| Msa0162140 | MtrunA17_Chr5g0439971 | 42.308 | 78 | 43 | 2 | 2 | 77 | 109 | 186 | 7.88e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162140 | AT3G11910.4 | 42.254 | 71 | 40 | 1 | 8 | 77 | 109 | 179 | 4.25e-11 | 63.9 |
| Msa0162140 | AT3G11910.2 | 42.254 | 71 | 40 | 1 | 8 | 77 | 109 | 179 | 4.25e-11 | 63.9 |
| Msa0162140 | AT3G11910.3 | 42.254 | 71 | 40 | 1 | 8 | 77 | 110 | 180 | 4.25e-11 | 63.9 |
| Msa0162140 | AT3G11910.1 | 42.254 | 71 | 40 | 1 | 8 | 77 | 110 | 180 | 4.25e-11 | 63.9 |
| Msa0162140 | AT5G06600.3 | 40.845 | 71 | 41 | 1 | 8 | 77 | 111 | 181 | 5.30e-11 | 63.9 |
| Msa0162140 | AT5G06600.2 | 40.845 | 71 | 41 | 1 | 8 | 77 | 110 | 180 | 5.85e-11 | 63.5 |
| Msa0162140 | AT5G06600.1 | 40.845 | 71 | 41 | 1 | 8 | 77 | 111 | 181 | 5.96e-11 | 63.5 |
Find 61 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGAATTTATTGAAATTT+AGG | 0.097481 | 1_4:-38500424 | None:intergenic |
| TTTAGGTGTGAAACCTTATT+TGG | 0.176545 | 1_4:+38500955 | Msa0162140:CDS |
| TAGCATTAACATTCATTTCT+TGG | 0.196289 | 1_4:-38501120 | None:intergenic |
| TCACAAGATACCCTTGTTTA+TGG | 0.211988 | 1_4:-38500448 | None:intergenic |
| TTGTTTGCTCTTTCCAAATA+AGG | 0.219478 | 1_4:-38500968 | None:intergenic |
| CCTTATGTTCAATCTGCTTT+AGG | 0.228849 | 1_4:+38500938 | Msa0162140:CDS |
| GATCTGTTAGAGATGAATTT+TGG | 0.232734 | 1_4:-38500547 | None:intergenic |
| ATTAAGACAATTTATAGATT+TGG | 0.265024 | 1_4:+38500661 | Msa0162140:CDS |
| CAATGGGCGTTTATTTCATT+AGG | 0.313100 | 1_4:+38500791 | Msa0162140:CDS |
| GATGTTGAACCTGATGTTCT+TGG | 0.313287 | 1_4:-38500599 | None:intergenic |
| AAGAACAAGAACATTGTAAA+AGG | 0.329093 | 1_4:+38499959 | Msa0162140:CDS |
| CCTTGAATTTCTCCTTCATC+TGG | 0.330532 | 1_4:-38500626 | None:intergenic |
| ATCCCATTTGTTTCGACAAT+GGG | 0.343222 | 1_4:+38500775 | Msa0162140:CDS |
| ACAGGATAAAGTTGTTGCTT+TGG | 0.378179 | 1_4:+38501003 | Msa0162140:CDS |
| GCTGATTCTTTACCACCATA+TGG | 0.384239 | 1_4:+38499887 | Msa0162140:CDS |
| AAACAAATTGAAGAAATTAC+AGG | 0.385891 | 1_4:+38500985 | Msa0162140:CDS |
| CCATTAAATACAATGTAAAA+TGG | 0.387827 | 1_4:-38499862 | None:intergenic |
| ATGAATGTTAATGCTACAAT+AGG | 0.395264 | 1_4:+38501127 | Msa0162140:CDS |
| GAAGAGGCTTAGGGATGAAT+TGG | 0.402385 | 1_4:+38501036 | Msa0162140:CDS |
| ACGCCCATTGTCGAAACAAA+TGG | 0.410934 | 1_4:-38500778 | None:intergenic |
| ATATTAAAATGAAGAGGCTT+AGG | 0.414330 | 1_4:+38501026 | Msa0162140:CDS |
| CCTAAAGCAGATTGAACATA+AGG | 0.421896 | 1_4:-38500938 | None:intergenic |
| TAAATAATCTTAAGAGTTTG+TGG | 0.433992 | 1_4:+38500870 | Msa0162140:CDS |
| TGGTCAACATCCCTCCTTAG+TGG | 0.451823 | 1_4:-38499842 | None:intergenic |
| AGATCAATCTTCAGATGAAA+GGG | 0.455070 | 1_4:+38500565 | Msa0162140:CDS |
| CATCGGAATTCGACTTGAGT+TGG | 0.457368 | 1_4:+38500909 | Msa0162140:CDS |
| GTTAGTTCTCGTTAATCAGC+TGG | 0.462338 | 1_4:+38499934 | Msa0162140:CDS |
| GAGACTCAGCAAAAGTTCAA+TGG | 0.462872 | 1_4:+38500374 | Msa0162140:intron |
| GAGTTTGAGGTTGCAAGGAA+AGG | 0.463515 | 1_4:+38501073 | Msa0162140:CDS |
| CGCCCATTGTCGAAACAAAT+GGG | 0.469097 | 1_4:-38500777 | None:intergenic |
| ACAATTAGTCCAAGAACATC+AGG | 0.475342 | 1_4:+38500590 | Msa0162140:CDS |
| CAGATCAATCTTCAGATGAA+AGG | 0.479808 | 1_4:+38500564 | Msa0162140:CDS |
| TGCTTCACAAGCAGAGTTTG+AGG | 0.482699 | 1_4:+38501060 | Msa0162140:CDS |
| TCAATGGAGGATATAGAAGC+TGG | 0.483484 | 1_4:+38500390 | Msa0162140:CDS |
| GGGTTATCAGAAATCAGAAA+TGG | 0.484311 | 1_4:+38501094 | Msa0162140:CDS |
| AGTTTGAGGTTGCAAGGAAA+GGG | 0.488934 | 1_4:+38501074 | Msa0162140:CDS |
| CCAGATGAAGGAGAAATTCA+AGG | 0.500292 | 1_4:+38500626 | Msa0162140:CDS |
| AGACAATTTATAGATTTGGA+TGG | 0.504986 | 1_4:+38500665 | Msa0162140:CDS |
| ATTCTTTACCACCATATGGA+TGG | 0.506704 | 1_4:+38499891 | Msa0162140:CDS |
| TATTAAAATGAAGAGGCTTA+GGG | 0.508270 | 1_4:+38501027 | Msa0162140:CDS |
| AATCCCATTTGTTTCGACAA+TGG | 0.512561 | 1_4:+38500774 | Msa0162140:CDS |
| AAATAATCTTAAGAGTTTGT+GGG | 0.516642 | 1_4:+38500871 | Msa0162140:CDS |
| TTCTTTACCACCATATGGAT+GGG | 0.526863 | 1_4:+38499892 | Msa0162140:CDS |
| GTGTTTCTATCCCATCCATA+TGG | 0.542297 | 1_4:-38499902 | None:intergenic |
| AAGCAGAGTTTGAGGTTGCA+AGG | 0.553922 | 1_4:+38501068 | Msa0162140:CDS |
| CTTTGGATATTAAAATGAAG+AGG | 0.557203 | 1_4:+38501020 | Msa0162140:CDS |
| ATTTGACTTTGTATCAAAGA+CGG | 0.558711 | 1_4:-38500746 | None:intergenic |
| CAATGGAGGATATAGAAGCT+GGG | 0.563913 | 1_4:+38500391 | Msa0162140:CDS |
| AGATCCTTGTGCATCCACTA+AGG | 0.569109 | 1_4:+38499828 | None:intergenic |
| AACGAGAACTAACTTGAAGA+AGG | 0.575362 | 1_4:-38499924 | None:intergenic |
| TCAACATCTAGTCCAGATGA+AGG | 0.586033 | 1_4:+38500614 | Msa0162140:CDS |
| AAATTCATTGACCATAAACA+AGG | 0.592420 | 1_4:+38500437 | Msa0162140:CDS |
| TCCTTGTGCATCCACTAAGG+AGG | 0.614099 | 1_4:+38499831 | None:intergenic |
| GGAGGAACTAGCAAAATCAT+CGG | 0.617394 | 1_4:+38500892 | Msa0162140:CDS |
| CCTTGTGCATCCACTAAGGA+GGG | 0.618988 | 1_4:+38499832 | None:intergenic |
| CCCTCCTTAGTGGATGCACA+AGG | 0.633723 | 1_4:-38499832 | None:intergenic |
| TAATCTTAAGAGTTTGTGGG+AGG | 0.635857 | 1_4:+38500874 | Msa0162140:CDS |
| TTTCTATCCCATCCATATGG+TGG | 0.636196 | 1_4:-38499899 | None:intergenic |
| ACTCAGCAAAAGTTCAATGG+AGG | 0.650485 | 1_4:+38500377 | Msa0162140:CDS |
| AATGGAGGATATAGAAGCTG+GGG | 0.652315 | 1_4:+38500392 | Msa0162140:CDS |
| AATTCATTGACCATAAACAA+GGG | 0.668373 | 1_4:+38500438 | Msa0162140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAATATTATCATTAG+AGG | - | chr1_4:38500310-38500329 | None:intergenic | 15.0% |
| !! | CAATGAATTTATTGAAATTT+AGG | - | chr1_4:38500427-38500446 | None:intergenic | 15.0% |
| !! | ATTAAGACAATTTATAGATT+TGG | + | chr1_4:38500661-38500680 | Msa0162140:CDS | 15.0% |
| !! | ACAAAAAATATTATCATTAG+AGG | - | chr1_4:38500310-38500329 | None:intergenic | 15.0% |
| !! | CAATGAATTTATTGAAATTT+AGG | - | chr1_4:38500427-38500446 | None:intergenic | 15.0% |
| !! | ATTAAGACAATTTATAGATT+TGG | + | chr1_4:38500661-38500680 | Msa0162140:CDS | 15.0% |
| !! | CCATTAAATACAATGTAAAA+TGG | - | chr1_4:38499865-38499884 | None:intergenic | 20.0% |
| !!! | CCATTTTACATTGTATTTAA+TGG | + | chr1_4:38499862-38499881 | Msa0162140:exon | 20.0% |
| !! | TAAATGACAAAACTAGTAAA+GGG | - | chr1_4:38500008-38500027 | None:intergenic | 20.0% |
| !! | ATAAATGACAAAACTAGTAA+AGG | - | chr1_4:38500009-38500028 | None:intergenic | 20.0% |
| !! | TAAATAATCTTAAGAGTTTG+TGG | + | chr1_4:38500870-38500889 | Msa0162140:CDS | 20.0% |
| !! | AAATAATCTTAAGAGTTTGT+GGG | + | chr1_4:38500871-38500890 | Msa0162140:CDS | 20.0% |
| !! | AAACAAATTGAAGAAATTAC+AGG | + | chr1_4:38500985-38501004 | Msa0162140:CDS | 20.0% |
| !! | CCATTAAATACAATGTAAAA+TGG | - | chr1_4:38499865-38499884 | None:intergenic | 20.0% |
| !!! | CCATTTTACATTGTATTTAA+TGG | + | chr1_4:38499862-38499881 | Msa0162140:exon | 20.0% |
| !! | TAAATGACAAAACTAGTAAA+GGG | - | chr1_4:38500008-38500027 | None:intergenic | 20.0% |
| !! | ATAAATGACAAAACTAGTAA+AGG | - | chr1_4:38500009-38500028 | None:intergenic | 20.0% |
| !! | TAAATAATCTTAAGAGTTTG+TGG | + | chr1_4:38500870-38500889 | Msa0162140:CDS | 20.0% |
| !! | AAATAATCTTAAGAGTTTGT+GGG | + | chr1_4:38500871-38500890 | Msa0162140:CDS | 20.0% |
| !! | AAACAAATTGAAGAAATTAC+AGG | + | chr1_4:38500985-38501004 | Msa0162140:CDS | 20.0% |
| ! | AAGAACAAGAACATTGTAAA+AGG | + | chr1_4:38499959-38499978 | Msa0162140:CDS | 25.0% |
| ! | AAATGACAAAACTAGTAAAG+GGG | - | chr1_4:38500007-38500026 | None:intergenic | 25.0% |
| ! | ATGAACAGTTTGATCTTAAT+AGG | + | chr1_4:38500136-38500155 | Msa0162140:intron | 25.0% |
| !! | ATTTTAGACTTCTAGATGAA+AGG | + | chr1_4:38500227-38500246 | Msa0162140:intron | 25.0% |
| !! | TTTTAGACTTCTAGATGAAA+GGG | + | chr1_4:38500228-38500247 | Msa0162140:intron | 25.0% |
| ! | AAATTCATTGACCATAAACA+AGG | + | chr1_4:38500437-38500456 | Msa0162140:CDS | 25.0% |
| ! | AATTCATTGACCATAAACAA+GGG | + | chr1_4:38500438-38500457 | Msa0162140:CDS | 25.0% |
| !! | GAATTGATGTCATGAATTTT+TGG | - | chr1_4:38500521-38500540 | None:intergenic | 25.0% |
| ! | AGACAATTTATAGATTTGGA+TGG | + | chr1_4:38500665-38500684 | Msa0162140:CDS | 25.0% |
| !! | ATTTGACTTTGTATCAAAGA+CGG | - | chr1_4:38500749-38500768 | None:intergenic | 25.0% |
| ! | CTTTGGATATTAAAATGAAG+AGG | + | chr1_4:38501020-38501039 | Msa0162140:CDS | 25.0% |
| ! | ATATTAAAATGAAGAGGCTT+AGG | + | chr1_4:38501026-38501045 | Msa0162140:CDS | 25.0% |
| ! | TATTAAAATGAAGAGGCTTA+GGG | + | chr1_4:38501027-38501046 | Msa0162140:CDS | 25.0% |
| ! | TAGCATTAACATTCATTTCT+TGG | - | chr1_4:38501123-38501142 | None:intergenic | 25.0% |
| ! | ATGAATGTTAATGCTACAAT+AGG | + | chr1_4:38501127-38501146 | Msa0162140:CDS | 25.0% |
| ! | AAGAACAAGAACATTGTAAA+AGG | + | chr1_4:38499959-38499978 | Msa0162140:CDS | 25.0% |
| ! | AAATGACAAAACTAGTAAAG+GGG | - | chr1_4:38500007-38500026 | None:intergenic | 25.0% |
| ! | ATGAACAGTTTGATCTTAAT+AGG | + | chr1_4:38500136-38500155 | Msa0162140:intron | 25.0% |
| !! | ATTTTAGACTTCTAGATGAA+AGG | + | chr1_4:38500227-38500246 | Msa0162140:intron | 25.0% |
| !! | TTTTAGACTTCTAGATGAAA+GGG | + | chr1_4:38500228-38500247 | Msa0162140:intron | 25.0% |
| ! | AAATTCATTGACCATAAACA+AGG | + | chr1_4:38500437-38500456 | Msa0162140:CDS | 25.0% |
| ! | AATTCATTGACCATAAACAA+GGG | + | chr1_4:38500438-38500457 | Msa0162140:CDS | 25.0% |
| !! | GAATTGATGTCATGAATTTT+TGG | - | chr1_4:38500521-38500540 | None:intergenic | 25.0% |
| ! | AGACAATTTATAGATTTGGA+TGG | + | chr1_4:38500665-38500684 | Msa0162140:CDS | 25.0% |
| !! | ATTTGACTTTGTATCAAAGA+CGG | - | chr1_4:38500749-38500768 | None:intergenic | 25.0% |
| ! | CTTTGGATATTAAAATGAAG+AGG | + | chr1_4:38501020-38501039 | Msa0162140:CDS | 25.0% |
| ! | ATATTAAAATGAAGAGGCTT+AGG | + | chr1_4:38501026-38501045 | Msa0162140:CDS | 25.0% |
| ! | TATTAAAATGAAGAGGCTTA+GGG | + | chr1_4:38501027-38501046 | Msa0162140:CDS | 25.0% |
| ! | TAGCATTAACATTCATTTCT+TGG | - | chr1_4:38501123-38501142 | None:intergenic | 25.0% |
| ! | ATGAATGTTAATGCTACAAT+AGG | + | chr1_4:38501127-38501146 | Msa0162140:CDS | 25.0% |
| AAGATCTAAAGGCTCATATT+TGG | + | chr1_4:38500102-38500121 | Msa0162140:intron | 30.0% | |
| !!! | TAGAGATGAATTTTGGTTCA+AGG | - | chr1_4:38500543-38500562 | None:intergenic | 30.0% |
| ! | GATCTGTTAGAGATGAATTT+TGG | - | chr1_4:38500550-38500569 | None:intergenic | 30.0% |
| AGATCAATCTTCAGATGAAA+GGG | + | chr1_4:38500565-38500584 | Msa0162140:CDS | 30.0% | |
| TTTAGGTGTGAAACCTTATT+TGG | + | chr1_4:38500955-38500974 | Msa0162140:CDS | 30.0% | |
| TTGTTTGCTCTTTCCAAATA+AGG | - | chr1_4:38500971-38500990 | None:intergenic | 30.0% | |
| AAGATCTAAAGGCTCATATT+TGG | + | chr1_4:38500102-38500121 | Msa0162140:intron | 30.0% | |
| !!! | TAGAGATGAATTTTGGTTCA+AGG | - | chr1_4:38500543-38500562 | None:intergenic | 30.0% |
| ! | GATCTGTTAGAGATGAATTT+TGG | - | chr1_4:38500550-38500569 | None:intergenic | 30.0% |
| AGATCAATCTTCAGATGAAA+GGG | + | chr1_4:38500565-38500584 | Msa0162140:CDS | 30.0% | |
| TTTAGGTGTGAAACCTTATT+TGG | + | chr1_4:38500955-38500974 | Msa0162140:CDS | 30.0% | |
| TTGTTTGCTCTTTCCAAATA+AGG | - | chr1_4:38500971-38500990 | None:intergenic | 30.0% | |
| ATTCTTTACCACCATATGGA+TGG | + | chr1_4:38499891-38499910 | Msa0162140:CDS | 35.0% | |
| TTCTTTACCACCATATGGAT+GGG | + | chr1_4:38499892-38499911 | Msa0162140:CDS | 35.0% | |
| AACGAGAACTAACTTGAAGA+AGG | - | chr1_4:38499927-38499946 | None:intergenic | 35.0% | |
| AAAGGGGAGAATGAAGATAA+GGG | - | chr1_4:38499991-38500010 | None:intergenic | 35.0% | |
| TAAAGGGGAGAATGAAGATA+AGG | - | chr1_4:38499992-38500011 | None:intergenic | 35.0% | |
| !! | CCTAACTTAATGATTCGGTA+GGG | - | chr1_4:38500071-38500090 | None:intergenic | 35.0% |
| CCTACCGAATCATTAAGTTA+GGG | + | chr1_4:38500069-38500088 | Msa0162140:intron | 35.0% | |
| TGAGCCTTTAGATCTTGATT+AGG | - | chr1_4:38500098-38500117 | None:intergenic | 35.0% | |
| ! | TCACAAGATACCCTTGTTTA+TGG | - | chr1_4:38500451-38500470 | None:intergenic | 35.0% |
| CAGATCAATCTTCAGATGAA+AGG | + | chr1_4:38500564-38500583 | Msa0162140:CDS | 35.0% | |
| ACAATTAGTCCAAGAACATC+AGG | + | chr1_4:38500590-38500609 | Msa0162140:CDS | 35.0% | |
| ! | GGAACAAAATGCTTTTCTTC+GGG | - | chr1_4:38500698-38500717 | None:intergenic | 35.0% |
| ! | CGGAACAAAATGCTTTTCTT+CGG | - | chr1_4:38500699-38500718 | None:intergenic | 35.0% |
| !! | GCATTTTGTTCCGTTTTTAG+AGG | + | chr1_4:38500706-38500725 | Msa0162140:CDS | 35.0% |
| ! | GTGCAAACTTCCTCTAAAAA+CGG | - | chr1_4:38500719-38500738 | None:intergenic | 35.0% |
| AATCCCATTTGTTTCGACAA+TGG | + | chr1_4:38500774-38500793 | Msa0162140:CDS | 35.0% | |
| ATCCCATTTGTTTCGACAAT+GGG | + | chr1_4:38500775-38500794 | Msa0162140:CDS | 35.0% | |
| CAATGGGCGTTTATTTCATT+AGG | + | chr1_4:38500791-38500810 | Msa0162140:CDS | 35.0% | |
| TAATCTTAAGAGTTTGTGGG+AGG | + | chr1_4:38500874-38500893 | Msa0162140:CDS | 35.0% | |
| CCTAAAGCAGATTGAACATA+AGG | - | chr1_4:38500941-38500960 | None:intergenic | 35.0% | |
| CCTTATGTTCAATCTGCTTT+AGG | + | chr1_4:38500938-38500957 | Msa0162140:CDS | 35.0% | |
| ! | ACAGGATAAAGTTGTTGCTT+TGG | + | chr1_4:38501003-38501022 | Msa0162140:CDS | 35.0% |
| GGGTTATCAGAAATCAGAAA+TGG | + | chr1_4:38501094-38501113 | Msa0162140:CDS | 35.0% | |
| ATTCTTTACCACCATATGGA+TGG | + | chr1_4:38499891-38499910 | Msa0162140:CDS | 35.0% | |
| TTCTTTACCACCATATGGAT+GGG | + | chr1_4:38499892-38499911 | Msa0162140:CDS | 35.0% | |
| AACGAGAACTAACTTGAAGA+AGG | - | chr1_4:38499927-38499946 | None:intergenic | 35.0% | |
| AAAGGGGAGAATGAAGATAA+GGG | - | chr1_4:38499991-38500010 | None:intergenic | 35.0% | |
| TAAAGGGGAGAATGAAGATA+AGG | - | chr1_4:38499992-38500011 | None:intergenic | 35.0% | |
| !! | CCTAACTTAATGATTCGGTA+GGG | - | chr1_4:38500071-38500090 | None:intergenic | 35.0% |
| CCTACCGAATCATTAAGTTA+GGG | + | chr1_4:38500069-38500088 | Msa0162140:intron | 35.0% | |
| TGAGCCTTTAGATCTTGATT+AGG | - | chr1_4:38500098-38500117 | None:intergenic | 35.0% | |
| ! | TCACAAGATACCCTTGTTTA+TGG | - | chr1_4:38500451-38500470 | None:intergenic | 35.0% |
| CAGATCAATCTTCAGATGAA+AGG | + | chr1_4:38500564-38500583 | Msa0162140:CDS | 35.0% | |
| ACAATTAGTCCAAGAACATC+AGG | + | chr1_4:38500590-38500609 | Msa0162140:CDS | 35.0% | |
| ! | GGAACAAAATGCTTTTCTTC+GGG | - | chr1_4:38500698-38500717 | None:intergenic | 35.0% |
| ! | CGGAACAAAATGCTTTTCTT+CGG | - | chr1_4:38500699-38500718 | None:intergenic | 35.0% |
| !! | GCATTTTGTTCCGTTTTTAG+AGG | + | chr1_4:38500706-38500725 | Msa0162140:CDS | 35.0% |
| ! | GTGCAAACTTCCTCTAAAAA+CGG | - | chr1_4:38500719-38500738 | None:intergenic | 35.0% |
| AATCCCATTTGTTTCGACAA+TGG | + | chr1_4:38500774-38500793 | Msa0162140:CDS | 35.0% | |
| ATCCCATTTGTTTCGACAAT+GGG | + | chr1_4:38500775-38500794 | Msa0162140:CDS | 35.0% | |
| CAATGGGCGTTTATTTCATT+AGG | + | chr1_4:38500791-38500810 | Msa0162140:CDS | 35.0% | |
| TAATCTTAAGAGTTTGTGGG+AGG | + | chr1_4:38500874-38500893 | Msa0162140:CDS | 35.0% | |
| CCTAAAGCAGATTGAACATA+AGG | - | chr1_4:38500941-38500960 | None:intergenic | 35.0% | |
| CCTTATGTTCAATCTGCTTT+AGG | + | chr1_4:38500938-38500957 | Msa0162140:CDS | 35.0% | |
| ! | ACAGGATAAAGTTGTTGCTT+TGG | + | chr1_4:38501003-38501022 | Msa0162140:CDS | 35.0% |
| GGGTTATCAGAAATCAGAAA+TGG | + | chr1_4:38501094-38501113 | Msa0162140:CDS | 35.0% | |
| ! | GCTGATTCTTTACCACCATA+TGG | + | chr1_4:38499887-38499906 | Msa0162140:CDS | 40.0% |
| TTTCTATCCCATCCATATGG+TGG | - | chr1_4:38499902-38499921 | None:intergenic | 40.0% | |
| ! | GTGTTTCTATCCCATCCATA+TGG | - | chr1_4:38499905-38499924 | None:intergenic | 40.0% |
| ! | GTTAGTTCTCGTTAATCAGC+TGG | + | chr1_4:38499934-38499953 | Msa0162140:CDS | 40.0% |
| CCCTACCGAATCATTAAGTT+AGG | + | chr1_4:38500068-38500087 | Msa0162140:intron | 40.0% | |
| !! | CCCTAACTTAATGATTCGGT+AGG | - | chr1_4:38500072-38500091 | None:intergenic | 40.0% |
| GACGCCCTAACTTAATGATT+CGG | - | chr1_4:38500076-38500095 | None:intergenic | 40.0% | |
| GCGTCCTAATCAAGATCTAA+AGG | + | chr1_4:38500091-38500110 | Msa0162140:intron | 40.0% | |
| GAGACTCAGCAAAAGTTCAA+TGG | + | chr1_4:38500374-38500393 | Msa0162140:intron | 40.0% | |
| ACTCAGCAAAAGTTCAATGG+AGG | + | chr1_4:38500377-38500396 | Msa0162140:CDS | 40.0% | |
| TCAATGGAGGATATAGAAGC+TGG | + | chr1_4:38500390-38500409 | Msa0162140:CDS | 40.0% | |
| CAATGGAGGATATAGAAGCT+GGG | + | chr1_4:38500391-38500410 | Msa0162140:CDS | 40.0% | |
| AATGGAGGATATAGAAGCTG+GGG | + | chr1_4:38500392-38500411 | Msa0162140:CDS | 40.0% | |
| GATGTTGAACCTGATGTTCT+TGG | - | chr1_4:38500602-38500621 | None:intergenic | 40.0% | |
| TCAACATCTAGTCCAGATGA+AGG | + | chr1_4:38500614-38500633 | Msa0162140:CDS | 40.0% | |
| CCTTGAATTTCTCCTTCATC+TGG | - | chr1_4:38500629-38500648 | None:intergenic | 40.0% | |
| CCAGATGAAGGAGAAATTCA+AGG | + | chr1_4:38500626-38500645 | Msa0162140:CDS | 40.0% | |
| !! | TTTTAGAGGAAGTTTGCACG+TGG | + | chr1_4:38500720-38500739 | Msa0162140:CDS | 40.0% |
| GGAGGAACTAGCAAAATCAT+CGG | + | chr1_4:38500892-38500911 | Msa0162140:CDS | 40.0% | |
| ! | AGTTTGAGGTTGCAAGGAAA+GGG | + | chr1_4:38501074-38501093 | Msa0162140:CDS | 40.0% |
| ! | GCTGATTCTTTACCACCATA+TGG | + | chr1_4:38499887-38499906 | Msa0162140:CDS | 40.0% |
| TTTCTATCCCATCCATATGG+TGG | - | chr1_4:38499902-38499921 | None:intergenic | 40.0% | |
| ! | GTGTTTCTATCCCATCCATA+TGG | - | chr1_4:38499905-38499924 | None:intergenic | 40.0% |
| ! | GTTAGTTCTCGTTAATCAGC+TGG | + | chr1_4:38499934-38499953 | Msa0162140:CDS | 40.0% |
| CCCTACCGAATCATTAAGTT+AGG | + | chr1_4:38500068-38500087 | Msa0162140:intron | 40.0% | |
| !! | CCCTAACTTAATGATTCGGT+AGG | - | chr1_4:38500072-38500091 | None:intergenic | 40.0% |
| GACGCCCTAACTTAATGATT+CGG | - | chr1_4:38500076-38500095 | None:intergenic | 40.0% | |
| GCGTCCTAATCAAGATCTAA+AGG | + | chr1_4:38500091-38500110 | Msa0162140:intron | 40.0% | |
| GAGACTCAGCAAAAGTTCAA+TGG | + | chr1_4:38500374-38500393 | Msa0162140:intron | 40.0% | |
| ACTCAGCAAAAGTTCAATGG+AGG | + | chr1_4:38500377-38500396 | Msa0162140:CDS | 40.0% | |
| TCAATGGAGGATATAGAAGC+TGG | + | chr1_4:38500390-38500409 | Msa0162140:CDS | 40.0% | |
| CAATGGAGGATATAGAAGCT+GGG | + | chr1_4:38500391-38500410 | Msa0162140:CDS | 40.0% | |
| AATGGAGGATATAGAAGCTG+GGG | + | chr1_4:38500392-38500411 | Msa0162140:CDS | 40.0% | |
| GATGTTGAACCTGATGTTCT+TGG | - | chr1_4:38500602-38500621 | None:intergenic | 40.0% | |
| TCAACATCTAGTCCAGATGA+AGG | + | chr1_4:38500614-38500633 | Msa0162140:CDS | 40.0% | |
| CCTTGAATTTCTCCTTCATC+TGG | - | chr1_4:38500629-38500648 | None:intergenic | 40.0% | |
| CCAGATGAAGGAGAAATTCA+AGG | + | chr1_4:38500626-38500645 | Msa0162140:CDS | 40.0% | |
| !! | TTTTAGAGGAAGTTTGCACG+TGG | + | chr1_4:38500720-38500739 | Msa0162140:CDS | 40.0% |
| GGAGGAACTAGCAAAATCAT+CGG | + | chr1_4:38500892-38500911 | Msa0162140:CDS | 40.0% | |
| ! | AGTTTGAGGTTGCAAGGAAA+GGG | + | chr1_4:38501074-38501093 | Msa0162140:CDS | 40.0% |
| CGCCCATTGTCGAAACAAAT+GGG | - | chr1_4:38500780-38500799 | None:intergenic | 45.0% | |
| ACGCCCATTGTCGAAACAAA+TGG | - | chr1_4:38500781-38500800 | None:intergenic | 45.0% | |
| ! | CATCGGAATTCGACTTGAGT+TGG | + | chr1_4:38500909-38500928 | Msa0162140:CDS | 45.0% |
| GAAGAGGCTTAGGGATGAAT+TGG | + | chr1_4:38501036-38501055 | Msa0162140:CDS | 45.0% | |
| TGCTTCACAAGCAGAGTTTG+AGG | + | chr1_4:38501060-38501079 | Msa0162140:CDS | 45.0% | |
| ! | AAGCAGAGTTTGAGGTTGCA+AGG | + | chr1_4:38501068-38501087 | Msa0162140:CDS | 45.0% |
| ! | GAGTTTGAGGTTGCAAGGAA+AGG | + | chr1_4:38501073-38501092 | Msa0162140:CDS | 45.0% |
| CGCCCATTGTCGAAACAAAT+GGG | - | chr1_4:38500780-38500799 | None:intergenic | 45.0% | |
| ACGCCCATTGTCGAAACAAA+TGG | - | chr1_4:38500781-38500800 | None:intergenic | 45.0% | |
| ! | CATCGGAATTCGACTTGAGT+TGG | + | chr1_4:38500909-38500928 | Msa0162140:CDS | 45.0% |
| GAAGAGGCTTAGGGATGAAT+TGG | + | chr1_4:38501036-38501055 | Msa0162140:CDS | 45.0% | |
| TGCTTCACAAGCAGAGTTTG+AGG | + | chr1_4:38501060-38501079 | Msa0162140:CDS | 45.0% | |
| ! | AAGCAGAGTTTGAGGTTGCA+AGG | + | chr1_4:38501068-38501087 | Msa0162140:CDS | 45.0% |
| ! | GAGTTTGAGGTTGCAAGGAA+AGG | + | chr1_4:38501073-38501092 | Msa0162140:CDS | 45.0% |
| TGGTCAACATCCCTCCTTAG+TGG | - | chr1_4:38499845-38499864 | None:intergenic | 50.0% | |
| TGGTCAACATCCCTCCTTAG+TGG | - | chr1_4:38499845-38499864 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 38499835 | 38501165 | 38499835 | ID=Msa0162140;Name=Msa0162140 |
| chr1_4 | mRNA | 38499835 | 38501165 | 38499835 | ID=Msa0162140-mRNA-1;Parent=Msa0162140;Name=Msa0162140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=46|1|0.5|1|1|1|2|0|296 |
| chr1_4 | exon | 38499835 | 38499980 | 38499835 | ID=Msa0162140-mRNA-1:exon:11253;Parent=Msa0162140-mRNA-1 |
| chr1_4 | exon | 38500375 | 38501165 | 38500375 | ID=Msa0162140-mRNA-1:exon:11254;Parent=Msa0162140-mRNA-1 |
| chr1_4 | five_prime_UTR | 38499835 | 38499880 | 38499835 | ID=Msa0162140-mRNA-1:five_prime_utr;Parent=Msa0162140-mRNA-1 |
| chr1_4 | CDS | 38499881 | 38499980 | 38499881 | ID=Msa0162140-mRNA-1:cds;Parent=Msa0162140-mRNA-1 |
| chr1_4 | CDS | 38500375 | 38501165 | 38500375 | ID=Msa0162140-mRNA-1:cds;Parent=Msa0162140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
