AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137860 MtrunA17_Chr1g0210284 94.231 364 21 0 862 1225 231 594 0.0 676
Msa0137860 MtrunA17_Chr1g0210284 78.736 348 33 4 492 798 237 584 4.31e-179 540
Msa0137860 MtrunA17_Chr1g0210284 80.716 363 38 5 81 416 215 572 3.16e-178 538
Msa0137860 MtrunA17_Chr1g0210284 92.727 110 4 1 3 108 2 111 5.88e-56 205
Msa0137860 MtrunA17_Chr1g0210284 98.718 78 1 0 796 873 14 91 1.55e-40 159
Msa0137860 MtrunA17_Chr1g0210284 86.585 82 11 0 415 496 15 96 1.71e-36 147
Msa0137860 MtrunA17_Chr1g0210274 93.681 364 23 0 862 1225 231 594 0.0 672
Msa0137860 MtrunA17_Chr1g0210274 82.337 368 33 5 81 421 215 577 0.0 552
Msa0137860 MtrunA17_Chr1g0210274 76.045 359 45 4 492 809 237 595 4.91e-177 535
Msa0137860 MtrunA17_Chr1g0210274 95.455 110 1 1 3 108 2 111 6.77e-58 211
Msa0137860 MtrunA17_Chr1g0210274 94.872 78 4 0 796 873 14 91 5.76e-39 154
Msa0137860 MtrunA17_Chr1g0210274 86.585 82 11 0 415 496 15 96 3.27e-36 146
Msa0137860 MtrunA17_Chr1g0210291 66.848 368 113 4 862 1224 230 593 4.60e-157 483
Msa0137860 MtrunA17_Chr1g0210291 66.567 335 84 5 109 421 247 575 2.22e-135 425
Msa0137860 MtrunA17_Chr1g0210291 58.840 362 95 6 492 802 236 594 4.88e-126 400
Msa0137860 MtrunA17_Chr1g0210291 70.000 100 26 1 13 108 11 110 3.77e-36 145
Msa0137860 MtrunA17_Chr1g0210291 75.309 81 20 0 416 496 15 95 2.06e-31 131
Msa0137860 MtrunA17_Chr1g0210291 69.620 79 24 0 795 873 12 90 1.06e-28 123
Msa0137860 MtrunA17_Chr7g0264861 60.450 311 116 2 913 1218 296 604 6.43e-120 385
Msa0137860 MtrunA17_Chr7g0264861 58.621 290 105 4 143 417 296 585 1.54e-99 330
Msa0137860 MtrunA17_Chr7g0264861 55.839 274 91 4 554 797 328 601 2.59e-91 307
Msa0137860 MtrunA17_Chr7g0264861 70.833 96 24 1 17 108 19 114 1.10e-34 142
Msa0137860 MtrunA17_Chr7g0264861 72.152 79 22 0 416 494 19 97 2.66e-29 125
Msa0137860 MtrunA17_Chr7g0264861 71.053 76 22 0 798 873 19 94 2.72e-28 122
Msa0137860 MtrunA17_Chr1g0171591 55.618 356 137 5 877 1214 244 596 6.85e-118 379
Msa0137860 MtrunA17_Chr1g0171591 53.593 334 129 4 110 417 247 580 1.00e-101 335
Msa0137860 MtrunA17_Chr1g0171591 48.343 362 131 8 492 797 235 596 7.78e-94 313
Msa0137860 MtrunA17_Chr1g0171591 65.686 102 31 1 11 108 8 109 1.15e-36 147
Msa0137860 MtrunA17_Chr1g0171591 62.366 93 35 0 404 496 2 94 6.37e-32 133
Msa0137860 MtrunA17_Chr1g0171591 65.823 79 27 0 795 873 11 89 8.93e-29 123
Msa0137860 MtrunA17_Chr1g0174101 52.909 361 159 3 861 1217 228 581 1.81e-114 369
Msa0137860 MtrunA17_Chr1g0174101 53.333 345 129 8 101 417 231 571 2.80e-98 325
Msa0137860 MtrunA17_Chr1g0174101 49.702 336 128 6 492 786 235 570 8.92e-92 307
Msa0137860 MtrunA17_Chr1g0174101 63.725 102 33 1 11 108 8 109 5.30e-35 142
Msa0137860 MtrunA17_Chr1g0174101 64.286 84 30 0 413 496 11 94 6.22e-29 124
Msa0137860 MtrunA17_Chr1g0174101 62.025 79 30 0 795 873 11 89 1.24e-26 116
Msa0137860 MtrunA17_Chr2g0330551 41.880 234 124 1 964 1197 317 538 2.92e-54 199
Msa0137860 MtrunA17_Chr2g0330551 41.256 223 115 3 192 410 328 538 3.59e-47 178
Msa0137860 MtrunA17_Chr2g0330551 33.585 265 163 4 528 780 275 538 1.71e-39 155
Msa0137860 MtrunA17_Chr5g0442481 37.712 236 136 2 962 1197 309 533 2.28e-51 190
Msa0137860 MtrunA17_Chr5g0442481 37.668 223 124 4 192 410 322 533 5.33e-45 171
Msa0137860 MtrunA17_Chr5g0442481 33.778 225 136 3 569 780 309 533 2.76e-36 145
Msa0137860 MtrunA17_Chr5g0442481 40.000 90 44 2 27 106 11 100 5.55e-11 66.6
Msa0137860 MtrunA17_Chr5g0442481 41.489 94 48 2 426 513 11 103 8.91e-11 66.2
Msa0137860 MtrunA17_Chr4g0037301 40.175 229 126 2 960 1188 317 534 1.24e-45 174
Msa0137860 MtrunA17_Chr4g0037301 36.923 260 139 6 154 401 288 534 5.99e-40 157
Msa0137860 MtrunA17_Chr4g0037301 36.199 221 122 5 567 771 317 534 2.62e-31 130
Msa0137860 MtrunA17_Chr7g0225191 40.756 238 128 4 960 1187 342 576 1.29e-45 174
Msa0137860 MtrunA17_Chr7g0225191 35.915 284 148 8 146 400 298 576 3.95e-37 149
Msa0137860 MtrunA17_Chr7g0225191 34.454 238 129 7 534 760 314 535 8.64e-32 132
Msa0137860 MtrunA17_Chr7g0225191 40.404 99 52 2 16 107 1 99 1.17e-12 72.4
Msa0137860 MtrunA17_Chr4g0064981 36.245 229 140 3 960 1188 337 559 3.21e-39 155
Msa0137860 MtrunA17_Chr4g0064981 32.500 320 174 9 118 401 246 559 1.83e-33 137
Msa0137860 MtrunA17_Chr4g0064981 30.942 223 136 4 567 771 337 559 2.25e-25 112
Msa0137860 MtrunA17_Chr4g0064981 42.353 85 45 1 28 108 12 96 9.89e-14 75.9
Msa0137860 MtrunA17_Chr5g0405621 34.016 244 145 3 960 1203 305 532 3.49e-37 148
Msa0137860 MtrunA17_Chr5g0405621 34.783 230 130 5 192 417 320 533 2.89e-32 133
Msa0137860 MtrunA17_Chr5g0405621 30.213 235 142 5 567 786 305 532 5.47e-25 110
Msa0137860 MtrunA17_Chr3g0132161 32.302 291 165 6 916 1188 278 554 3.59e-36 145
Msa0137860 MtrunA17_Chr3g0132161 33.566 286 151 8 146 401 278 554 6.98e-31 129
Msa0137860 MtrunA17_Chr3g0132161 29.317 249 127 8 565 771 313 554 3.90e-22 102
Msa0137860 MtrunA17_Chr3g0132161 38.889 90 51 1 22 107 10 99 2.67e-13 74.3
Msa0137860 MtrunA17_Chr2g0304561 36.364 231 137 3 960 1188 331 553 6.67e-36 145
Msa0137860 MtrunA17_Chr2g0304561 31.429 315 179 8 118 401 245 553 4.54e-31 130
Msa0137860 MtrunA17_Chr2g0304561 32.751 229 124 6 567 771 331 553 6.42e-24 108
Msa0137860 MtrunA17_Chr2g0304561 37.647 85 49 1 28 108 13 97 3.43e-11 67.4
Msa0137860 MtrunA17_Chr2g0333371 31.441 229 114 5 960 1188 104 289 1.31e-29 120
Msa0137860 MtrunA17_Chr2g0333371 30.667 225 113 6 181 401 104 289 2.94e-27 114
Msa0137860 MtrunA17_Chr2g0333371 31.532 222 99 8 567 771 104 289 1.16e-20 94.4
Msa0137860 MtrunA17_Chr5g0408921 28.099 242 160 8 963 1200 338 569 4.53e-13 73.6
Msa0137860 MtrunA17_Chr5g0408921 29.075 227 149 8 192 413 350 569 3.44e-12 70.9
Msa0137860 MtrunA17_Chr7g0251871 27.160 243 161 8 963 1201 332 562 6.44e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137860 AT2G39210.1 65.363 358 111 2 874 1218 238 595 1.75e-152 471
Msa0137860 AT2G39210.1 63.077 325 95 5 110 411 244 566 1.13e-125 400
Msa0137860 AT2G39210.1 60.000 335 89 4 492 781 232 566 7.56e-124 395
Msa0137860 AT2G39210.1 71.717 99 24 1 14 108 8 106 1.17e-37 151
Msa0137860 AT2G39210.1 73.171 82 22 0 415 496 10 91 3.95e-32 134
Msa0137860 AT2G39210.1 77.632 76 17 0 798 873 11 86 3.65e-31 131
Msa0137860 AT2G28120.1 57.012 328 138 2 874 1200 234 559 1.02e-119 384
Msa0137860 AT2G28120.1 54.517 321 128 5 110 413 240 559 2.92e-100 331
Msa0137860 AT2G28120.1 51.672 329 115 5 497 783 233 559 1.50e-94 315
Msa0137860 AT2G28120.1 69.565 92 24 1 21 108 11 102 1.66e-32 135
Msa0137860 AT2G28120.1 63.855 83 30 0 420 502 11 93 6.59e-27 117
Msa0137860 AT2G28120.1 70.833 72 21 0 802 873 11 82 2.79e-26 115
Msa0137860 AT2G34355.2 37.037 270 145 3 935 1194 116 370 2.79e-55 197
Msa0137860 AT2G34355.2 35.206 267 140 4 145 407 133 370 1.99e-47 174
Msa0137860 AT2G34355.2 37.900 219 124 3 571 777 152 370 1.23e-41 157
Msa0137860 AT1G74780.1 42.128 235 124 1 964 1198 311 533 2.06e-54 199
Msa0137860 AT1G74780.1 42.727 220 110 3 196 411 326 533 1.59e-48 182
Msa0137860 AT1G74780.1 36.323 223 130 3 571 781 311 533 2.35e-38 152
Msa0137860 AT1G74780.1 38.889 108 46 2 21 108 1 108 6.24e-13 73.6
Msa0137860 AT1G74780.1 40.860 93 39 1 426 502 7 99 6.02e-12 70.5
Msa0137860 AT2G34355.1 37.037 270 145 3 935 1194 266 520 8.89e-54 197
Msa0137860 AT2G34355.1 35.206 267 140 4 145 407 283 520 3.47e-46 175
Msa0137860 AT2G34355.1 37.900 219 124 3 571 777 302 520 1.56e-40 158
Msa0137860 AT2G34350.1 36.667 270 144 3 925 1194 280 522 4.81e-51 189
Msa0137860 AT2G34350.1 32.219 329 177 7 109 407 210 522 5.82e-42 162
Msa0137860 AT2G34350.1 35.616 219 129 3 571 777 304 522 5.31e-37 147
Msa0137860 AT2G34350.2 36.667 270 144 3 925 1194 280 522 4.81e-51 189
Msa0137860 AT2G34350.2 32.219 329 177 7 109 407 210 522 5.82e-42 162
Msa0137860 AT2G34350.2 35.616 219 129 3 571 777 304 522 5.31e-37 147
Msa0137860 AT1G18940.1 40.271 221 120 1 968 1188 308 516 3.32e-50 187
Msa0137860 AT1G18940.1 39.252 214 114 3 192 401 315 516 2.59e-44 169
Msa0137860 AT1G18940.1 35.885 209 122 3 575 771 308 516 1.00e-35 144
Msa0137860 AT1G18940.1 40.741 108 46 2 19 108 1 108 7.76e-15 79.3
Msa0137860 AT1G18940.1 36.885 122 62 2 418 525 1 121 1.10e-12 72.8
Msa0137860 AT1G18940.1 47.761 67 35 0 800 866 1 67 1.08e-11 69.3
Msa0137860 AT2G16660.1 39.035 228 128 2 960 1187 313 529 5.93e-46 175
Msa0137860 AT2G16660.1 39.906 213 113 4 192 400 328 529 1.80e-39 155
Msa0137860 AT2G16660.1 34.247 219 127 4 567 770 313 529 3.69e-31 130
Msa0137860 AT4G34950.1 35.907 259 145 3 929 1187 313 550 6.61e-46 175
Msa0137860 AT4G34950.1 36.145 249 136 5 164 400 313 550 2.73e-39 155
Msa0137860 AT4G34950.1 33.790 219 128 4 567 770 334 550 5.32e-31 130
Msa0137860 AT3G01930.1 38.235 238 142 3 960 1197 239 471 4.34e-43 164
Msa0137860 AT3G01930.1 32.852 277 168 7 138 410 209 471 4.43e-36 144
Msa0137860 AT3G01930.1 31.513 238 134 6 567 780 239 471 7.64e-26 113
Msa0137860 AT3G01930.2 38.235 238 142 3 960 1197 352 584 1.55e-42 165
Msa0137860 AT3G01930.2 33.091 275 166 7 140 410 324 584 2.45e-35 144
Msa0137860 AT3G01930.2 31.513 238 134 6 567 780 352 584 1.02e-25 114
Msa0137860 AT3G01930.2 40.449 89 49 1 23 107 12 100 6.07e-13 73.6
Msa0137860 AT5G50630.1 33.882 304 174 5 887 1187 251 530 2.67e-42 164
Msa0137860 AT5G50630.1 33.775 302 160 9 117 400 251 530 5.59e-35 142
Msa0137860 AT5G50630.1 29.773 309 176 9 493 770 232 530 2.37e-28 122
Msa0137860 AT5G50630.1 42.222 90 47 2 23 107 12 101 1.32e-13 75.5
Msa0137860 AT5G50520.1 33.882 304 174 5 887 1187 251 530 2.67e-42 164
Msa0137860 AT5G50520.1 33.775 302 160 9 117 400 251 530 5.59e-35 142
Msa0137860 AT5G50520.1 29.773 309 176 9 493 770 232 530 2.37e-28 122
Msa0137860 AT5G50520.1 42.222 90 47 2 23 107 12 101 1.32e-13 75.5
Msa0137860 AT5G14120.1 37.975 237 142 3 960 1196 347 578 4.48e-42 164
Msa0137860 AT5G14120.1 32.117 274 168 7 140 409 319 578 9.64e-34 139
Msa0137860 AT5G14120.1 31.064 235 137 5 567 779 347 578 2.16e-25 113
Msa0137860 AT5G14120.1 40.659 91 50 1 21 107 10 100 2.14e-13 75.1
Msa0137860 AT1G80530.1 34.498 229 136 4 960 1188 330 544 3.69e-34 140
Msa0137860 AT1G80530.1 33.621 232 128 7 182 401 327 544 7.31e-29 123
Msa0137860 AT1G80530.1 31.081 222 129 6 567 771 330 544 4.64e-22 102
Msa0137860 AT2G16660.2 46.835 79 40 1 960 1038 313 389 3.10e-16 82.8
Msa0137860 AT2G16660.2 48.438 64 31 1 192 255 328 389 5.59e-11 66.6
Msa0137860 AT3G01630.2 26.510 298 188 7 121 401 279 562 1.92e-13 75.1
Msa0137860 AT3G01630.2 24.768 323 219 9 883 1188 247 562 2.07e-11 68.6
Msa0137860 AT3G01630.1 26.510 298 188 7 121 401 261 544 2.17e-13 75.1
Msa0137860 AT3G01630.1 24.768 323 219 9 883 1188 229 544 2.38e-11 68.6
Msa0137860 AT3G01930.3 40.449 89 49 1 23 107 12 100 2.42e-13 74.3
Msa0137860 AT3G01930.3 47.368 76 38 1 960 1035 352 425 8.02e-11 66.2

Find 218 sgRNAs with CRISPR-Local

Find 731 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACCTTTGTAAAACTTTC+TGG 0.108023 1_3:-70506944 None:intergenic
TATGCAACTTTGTATAATTT+TGG 0.150653 1_3:+70516000 Msa0137860:CDS
AACATATCTTCCCACCATTT+TGG 0.169832 1_3:-70511997 None:intergenic
AACACATCTTCCCACCATTT+TGG 0.178261 1_3:-70506244 None:intergenic
TGCTGTTGTTTCACTTATTT+TGG 0.181515 1_3:+70506912 Msa0137860:CDS
TGCTGTTGTTTCACTTATTT+TGG 0.181515 1_3:+70516212 Msa0137860:CDS
TATGCAACTTTATATAATTT+TGG 0.182353 1_3:+70506700 Msa0137860:CDS
TGCTGTTGTTAACCTTATTT+TGG 0.216909 1_3:+70512665 Msa0137860:CDS
ATTGCAGCTGCAACTTTCTT+TGG 0.248818 1_3:+70512642 Msa0137860:intron
TACGTAGCTTCAGTAATAAT+TGG 0.273011 1_3:+70506610 Msa0137860:CDS
TACGTAGCTTCAGTAATAAT+TGG 0.273011 1_3:+70515910 Msa0137860:CDS
TTCCATTGGTGTTCATGGTT+TGG 0.277479 1_3:+70505289 Msa0137860:CDS
GGTGCTATTCTCAATTTCTT+TGG 0.281836 1_3:+70505563 Msa0137860:CDS
AGCAACGTTGGTGTCCTTTC+AGG 0.282717 1_3:+70505497 Msa0137860:CDS
TCCATTGGTGTTCATGGTTT+GGG 0.288773 1_3:+70505290 Msa0137860:CDS
TCTTTGGTTACTTCATGATT+TGG 0.300114 1_3:+70505579 Msa0137860:CDS
TTGTCCTAGCCACCAAAATA+AGG 0.303085 1_3:-70512677 None:intergenic
GTGGCATGTATTTGTGGTAT+TGG 0.316784 1_3:+70512093 Msa0137860:CDS
GTGACATATACAAGAGATAT+AGG 0.328395 1_3:+70506962 Msa0137860:CDS
GTGACATATACAAGAGATAT+AGG 0.328395 1_3:+70512715 Msa0137860:CDS
TATGCAGCTTCAGTGATTAT+CGG 0.345986 1_3:+70512363 Msa0137860:CDS
ACCACCGTCCGGTGATGAAT+TGG 0.352452 1_3:-70514649 None:intergenic
GTAAGCATTTGGAATTATCT+AGG 0.357538 1_3:+70506451 Msa0137860:CDS
GTAAGCATTTGGAATTATCT+AGG 0.357538 1_3:+70515751 Msa0137860:CDS
TTAACGGCAATTGATAATCT+TGG 0.358953 1_3:+70506370 Msa0137860:CDS
ACCACCGTCCGGTGATGAAT+TGG 0.362421 1_3:-70505334 None:intergenic
CTTGGAAAGCATAGAATAGA+AGG 0.363836 1_3:+70512567 Msa0137860:CDS
AGTTTCACACAGGGTGAGTT+TGG 0.364101 1_3:+70511763 Msa0137860:CDS
AGTTTCACACAGGGTGAGTT+TGG 0.364101 1_3:+70515325 Msa0137860:CDS
TTGACAGCAATTGATAATCT+TGG 0.365572 1_3:+70515670 Msa0137860:CDS
CTTGGAAAGCATAGAATAGA+AGG 0.368622 1_3:+70516114 Msa0137860:CDS
CTTGGAAAGCAAAGAATAGA+AGG 0.371411 1_3:+70506814 Msa0137860:CDS
GGTAATTCCATTGGTGTTCA+TGG 0.380117 1_3:+70505284 Msa0137860:CDS
CTATTTGTGGCATGTATTTG+TGG 0.387438 1_3:+70506334 Msa0137860:CDS
CTATTTGTGGCATGTATTTG+TGG 0.387438 1_3:+70515634 Msa0137860:CDS
AGCAATGTTGGTGTCCTTGC+AGG 0.392854 1_3:+70511250 Msa0137860:CDS
TTGACAGCAGTTGATAATCT+TGG 0.396343 1_3:+70512123 Msa0137860:CDS
TTGTGTCTTTAGTAAGCATT+TGG 0.401481 1_3:+70506440 Msa0137860:CDS
TTGTGTCTTTAGTAAGCATT+TGG 0.401481 1_3:+70515740 Msa0137860:CDS
TAAGGAGGTTTAGTGTGCTT+TGG 0.411770 1_3:-70505454 None:intergenic
GTGGCATGTATTTGTGGTGT+TGG 0.412454 1_3:+70506340 Msa0137860:CDS
GTGGCATGTATTTGTGGTGT+TGG 0.412454 1_3:+70515640 Msa0137860:CDS
AGATATGTTGATACTATTTG+TGG 0.416529 1_3:+70506321 Msa0137860:CDS
AGATATGTTGATACTATTTG+TGG 0.416529 1_3:+70515621 Msa0137860:CDS
CAAAGAAGCAAAGAAGCAAT+TGG 0.418174 1_3:+70506786 Msa0137860:CDS
ATATAGGGAAGAAGCTGAAA+TGG 0.422458 1_3:+70506978 Msa0137860:CDS
ATATAGGGAAGAAGCTGAAA+TGG 0.422458 1_3:+70512731 Msa0137860:CDS
CTCCGGCGGCTGCCATGATT+AGG 0.422545 1_3:-70514691 None:intergenic
CTATTTGTGGCATGTATTTG+TGG 0.422626 1_3:+70512087 Msa0137860:CDS
AGAGTTAAAGTAAGCATAAG+AGG 0.426460 1_3:-70506532 None:intergenic
AGAGTTAAAGTAAGCATAAG+AGG 0.426460 1_3:-70515832 None:intergenic
ATTGATAATCTTGGTCAGAT+AGG 0.426987 1_3:+70515679 Msa0137860:CDS
ACCACCGTCCGGTGATGGCT+TGG 0.430632 1_3:-70511087 None:intergenic
AGACATGTTGATACTATTTG+TGG 0.431839 1_3:+70512074 Msa0137860:CDS
GTATAATCATCACCTCTTGC+CGG 0.432509 1_3:-70512027 None:intergenic
CAAAGAAGCTAAGAAACAAT+TGG 0.433049 1_3:+70512539 Msa0137860:CDS
CAAAGAAGCTAAGAAACAAT+TGG 0.433049 1_3:+70516086 Msa0137860:CDS
TCATTGAAGAGAACAAGATT+TGG 0.435135 1_3:+70506086 Msa0137860:CDS
TCATTGAAGAGAACAAGATT+TGG 0.435135 1_3:+70515401 Msa0137860:CDS
GGAAGTATAACAAGTCCAAT+TGG 0.435702 1_3:+70512474 Msa0137860:intron
GTACAGAGAAGAAGCTGAAA+TGG 0.437234 1_3:+70516278 Msa0137860:CDS
GCCGGAGCCACCTACATGTT+CGG 0.441437 1_3:+70511145 Msa0137860:CDS
AACACATCTTCCCACCACTT+TGG 0.442991 1_3:-70515544 None:intergenic
AACTCTCTTTGTCTCATGTG+TGG 0.452502 1_3:+70506549 Msa0137860:CDS
AACTCTCTTTGTCTCATGTG+TGG 0.452502 1_3:+70515849 Msa0137860:CDS
TGTTGAACTGAGGTTGTTGT+TGG 0.458257 1_3:-70506185 None:intergenic
TGGTGTTGGTGGAACTTTAA+CGG 0.460287 1_3:+70506354 Msa0137860:CDS
TTATTGAAGAGAACAAGATT+TGG 0.460711 1_3:+70511839 Msa0137860:CDS
AGCAACGTTGGTGTCCTTGC+AGG 0.461948 1_3:+70514812 Msa0137860:CDS
ACTCTCTTTGTCTCATGTGT+GGG 0.462025 1_3:+70506550 Msa0137860:CDS
ACTCTCTTTGTCTCATGTGT+GGG 0.462025 1_3:+70515850 Msa0137860:CDS
TTAAGCACATATAAGCCAAT+TGG 0.462132 1_3:-70512489 None:intergenic
ATTGATAATCTTGGTCAGAT+AGG 0.465696 1_3:+70506379 Msa0137860:CDS
GTTGATAATCTTGGTCAGAT+AGG 0.465696 1_3:+70512132 Msa0137860:CDS
AGAGTCAAAGAAAGCATAAG+AGG 0.471726 1_3:-70512285 None:intergenic
GAAGCTGCATAGAGACCCTT+TGG 0.475496 1_3:-70512351 None:intergenic
TTTCGCCTCCTTCCTAATCA+TGG 0.475895 1_3:+70514679 Msa0137860:CDS
ACCGAACATGTAGGTGGCTC+CGG 0.476564 1_3:-70505393 None:intergenic
ACCGAACATGTAGGTGGCTC+CGG 0.476564 1_3:-70514708 None:intergenic
CCTTCTGTTACTATTTGCAC+TGG 0.477008 1_3:-70506142 None:intergenic
CCTTCTGTTACTATTTGCAC+TGG 0.477008 1_3:-70511895 None:intergenic
TGACATATACAAGAGATATA+GGG 0.477639 1_3:+70506963 Msa0137860:CDS
TGACATATACAAGAGATATA+GGG 0.477639 1_3:+70512716 Msa0137860:CDS
ACCGAACATGTAGGTGGCTC+CGG 0.477927 1_3:-70511146 None:intergenic
TAAGGAGGTTTAGTGTACTT+TGG 0.479046 1_3:-70514769 None:intergenic
CAACGAAATCTCTCCACCTT+GGG 0.480872 1_3:+70511279 Msa0137860:CDS
GACTCTCTTTGTCTCGTGTG+TGG 0.483546 1_3:+70512302 Msa0137860:CDS
ACTCTCTTTGTCTCGTGTGT+GGG 0.489234 1_3:+70512303 Msa0137860:CDS
GCCGGAGCCACCTACATGTT+CGG 0.490142 1_3:+70505392 Msa0137860:CDS
GCCGGAGCCACCTACATGTT+CGG 0.490142 1_3:+70514707 Msa0137860:CDS
CCTTCTGTTACTATTTGCAC+TGG 0.490393 1_3:-70515457 None:intergenic
TAAGGAGGTCTAGTGTGCTT+TGG 0.491975 1_3:-70511207 None:intergenic
AAAATGTTCTGAAACAAATC+CGG 0.495163 1_3:-70512238 None:intergenic
GGAAGTGTAGCAAGTCCACT+TGG 0.498928 1_3:+70506721 Msa0137860:CDS
GGAAGTGTAGCAAGTCCACT+TGG 0.498928 1_3:+70516021 Msa0137860:CDS
GCATGTATTTGTGGTGTTGG+TGG 0.506795 1_3:+70506343 Msa0137860:CDS
GCATGTATTTGTGGTGTTGG+TGG 0.506795 1_3:+70515643 Msa0137860:CDS
TTCCTAATCATGGCAGCCGC+CGG 0.509362 1_3:+70514689 Msa0137860:CDS
GATAGCATTTGGTGTGCCAA+AGG 0.517982 1_3:+70512335 Msa0137860:CDS
CAACGAACTCTATCCACCTT+GGG 0.520279 1_3:+70514841 Msa0137860:CDS
TATTGTATAATCATCACCTC+TGG 0.521894 1_3:-70515578 None:intergenic
GCATGTATTTGTGGTATTGG+TGG 0.523323 1_3:+70512096 Msa0137860:CDS
GCACACCAAATGCTATCAAA+AGG 0.525284 1_3:-70512329 None:intergenic
GACAAACCACCGTCCGGTGA+TGG 0.525568 1_3:-70511092 None:intergenic
GGCAGCTGACATGATTAGAA+AGG 0.528910 1_3:-70511125 None:intergenic
ATAGCATTTGGTGTGCCAAA+GGG 0.533343 1_3:+70512336 Msa0137860:CDS
TTTCTAATCATGTCAGCTGC+CGG 0.534042 1_3:+70511127 Msa0137860:CDS
GGCGGCTGCCATGATTAGAA+AGG 0.534798 1_3:-70505372 None:intergenic
GTTACTATTTGCACTGGTGA+AGG 0.536206 1_3:-70506136 None:intergenic
GTTACTATTTGCACTGGTGA+AGG 0.536206 1_3:-70515451 None:intergenic
AAGAAGCAATTGGAAGCACT+TGG 0.537705 1_3:+70506796 Msa0137860:CDS
AAGAAACAATTGGAAGCACT+TGG 0.542138 1_3:+70512549 Msa0137860:CDS
AAGAAACAATTGGAAGCACT+TGG 0.542138 1_3:+70516096 Msa0137860:CDS
TAGGGAAGAAGCTGAAATGG+TGG 0.542633 1_3:+70506981 Msa0137860:CDS
TAGGGAAGAAGCTGAAATGG+TGG 0.542633 1_3:+70512734 Msa0137860:CDS
ACAGAGGAAGATGACAAAGT+TGG 0.548475 1_3:+70516324 Msa0137860:CDS
GTATAATCATCACCTCTGGC+TGG 0.551037 1_3:-70515574 None:intergenic
CCGTCCGGTGATGGCTTGGA+CGG 0.551701 1_3:-70511083 None:intergenic
AAAGCATAGAATAGAAGGGC+AGG 0.553260 1_3:+70512572 Msa0137860:CDS
TCAACGAAATCTCTCCACCT+TGG 0.557251 1_3:+70511278 Msa0137860:CDS
GGAAGATATGTTCAATCCAC+CGG 0.560480 1_3:+70512008 Msa0137860:CDS
TTTCTAATCATGGCAGCCGC+CGG 0.562727 1_3:+70505374 Msa0137860:CDS
GAAGCTACGTAGAGACCCTC+TGG 0.564193 1_3:-70515898 None:intergenic
TGCAGCGGTAATAATAATGA+AGG 0.565571 1_3:-70516178 None:intergenic
TAATCATCACCTCTGGCTGG+TGG 0.569807 1_3:-70515571 None:intergenic
GGCGGCTGCCATGATTAGGA+AGG 0.570452 1_3:-70514687 None:intergenic
AAAGCAAAGAATAGAAGGGC+AGG 0.570654 1_3:+70506819 Msa0137860:CDS
GTTTGGTTTAAGTGCTGCTG+TGG 0.571063 1_3:+70511780 Msa0137860:CDS
GTTTGGTTTAAGTGCTGCTG+TGG 0.571063 1_3:+70515342 Msa0137860:CDS
GTGCTTAATGTGAAGATCAC+TGG 0.572972 1_3:+70512504 Msa0137860:CDS
GTGCTTAATGTGAAGATCAC+TGG 0.572972 1_3:+70516051 Msa0137860:CDS
GGGCAGGAATTGAATTGTGT+TGG 0.581328 1_3:+70506835 Msa0137860:CDS
GGGCAGGAATTGAATTGTGT+TGG 0.581328 1_3:+70512588 Msa0137860:CDS
CTCACCGTCCAAGCCATCAC+CGG 0.581421 1_3:+70511079 Msa0137860:CDS
TCAATGAAAACAACGGCAAG+TGG 0.581784 1_3:-70506070 None:intergenic
TCAATGAAAACAACGGCAAG+TGG 0.581784 1_3:-70515385 None:intergenic
GTTCGTTGATTAGTCCTGAA+AGG 0.581835 1_3:-70505511 None:intergenic
AACACCAATGGAATTACCTA+CGG 0.584500 1_3:-70505279 None:intergenic
TCCCAAACCATGAACACCAA+TGG 0.584749 1_3:-70505291 None:intergenic
GAAGCTACGTAGAGACCCTC+AGG 0.585366 1_3:-70506598 None:intergenic
GAAAATGACGAACCACCGTC+CGG 0.588466 1_3:-70514660 None:intergenic
TCAACGAACTCTATCCACCT+TGG 0.589582 1_3:+70514840 Msa0137860:CDS
AAAGACTTTGGTAGCAACGT+TGG 0.591191 1_3:+70505485 Msa0137860:intron
AAAGTAAGCATAAGAGGACG+AGG 0.591288 1_3:-70506526 None:intergenic
AAAGAAAGCATAAGAGGACG+AGG 0.591288 1_3:-70512279 None:intergenic
AAAGTAAGCATAAGAGGACG+AGG 0.591288 1_3:-70515826 None:intergenic
GTATGGTTTAAGTGCTGCTG+TGG 0.591609 1_3:+70506027 Msa0137860:CDS
GTGCTTAATGTGAAGATCGC+TGG 0.592619 1_3:+70506751 Msa0137860:intron
GAAGAGTAGTAGTTTCACAC+AGG 0.592988 1_3:+70511753 Msa0137860:CDS
GGGCGTGAATTGAATTGTGT+TGG 0.593657 1_3:+70516135 Msa0137860:CDS
GGAAGAAGCTGAAATGGTGG+AGG 0.594474 1_3:+70506984 Msa0137860:CDS
GGAAGAAGCTGAAATGGTGG+AGG 0.594474 1_3:+70512737 Msa0137860:CDS
TTTCGTTGATTAGTCCTGCA+AGG 0.596687 1_3:-70511264 None:intergenic
CTCACTGTCCAATTCATCAC+CGG 0.597382 1_3:+70514641 Msa0137860:CDS
GGCTGCCATGATTAGGAAGG+AGG 0.603051 1_3:-70514684 None:intergenic
GATAGCATTTGATGTGCCTG+AGG 0.605002 1_3:+70506582 Msa0137860:CDS
GAAGAATAGTAGTTTCACAC+AGG 0.608304 1_3:+70515315 Msa0137860:intron
ATAGCATTTGATGTGCCTGA+GGG 0.610223 1_3:+70506583 Msa0137860:CDS
CAGAGAAGAAGCTGAAATGG+TGG 0.612740 1_3:+70516281 Msa0137860:CDS
ATGTTCAATCCACCGGCAAG+AGG 0.616234 1_3:+70512015 Msa0137860:CDS
GGAGTATAGACCGAACATGT+AGG 0.618153 1_3:-70505402 None:intergenic
GTTCTCTTCAATGAAAACAA+CGG 0.618801 1_3:-70506077 None:intergenic
GTTCTCTTCAATGAAAACAA+CGG 0.618801 1_3:-70515392 None:intergenic
GCACATCAAATGCTATCAGA+AGG 0.619230 1_3:-70515876 None:intergenic
TAATCATCACCTCTTGCCGG+TGG 0.623378 1_3:-70512024 None:intergenic
AGCGACATAAAAGAAACACT+TGG 0.623492 1_3:+70511178 Msa0137860:CDS
GCACATCAAATGCTATCAGA+AGG 0.624152 1_3:-70506576 None:intergenic
GGAGTATAGACCGAACATGT+AGG 0.626603 1_3:-70511155 None:intergenic
CCTATTGTCAAAACTACCCA+TGG 0.627938 1_3:-70505542 None:intergenic
GAAGTGTAGCAAGTCCACTT+GGG 0.630096 1_3:+70506722 Msa0137860:CDS
GAAGTGTAGCAAGTCCACTT+GGG 0.630096 1_3:+70516022 Msa0137860:CDS
GCGGCCGTAGGTAATTCCAT+TGG 0.630516 1_3:+70505275 Msa0137860:CDS
GGCTGCCATGATTAGAAAGG+AGG 0.630867 1_3:-70505369 None:intergenic
AGAAGAAGCTGAAATGGTGG+AGG 0.632991 1_3:+70516284 Msa0137860:CDS
CAACGAACTCTATCCACCAT+GGG 0.634367 1_3:+70505526 Msa0137860:CDS
CCAGTGCAAATAGTAACAGA+AGG 0.634763 1_3:+70506142 Msa0137860:CDS
CCAGTGCAAATAGTAACAGA+AGG 0.634763 1_3:+70511895 Msa0137860:CDS
GATAGCATTTGATGTGCCAG+AGG 0.635342 1_3:+70515882 Msa0137860:CDS
ATGGTGGAGGTAAAGAACGA+GGG 0.640025 1_3:+70512750 Msa0137860:CDS
TACATGTTCGGTCTATACTC+CGG 0.641076 1_3:+70514719 Msa0137860:CDS
CCAGTGCAAATAGTAACAGA+AGG 0.641583 1_3:+70515457 Msa0137860:CDS
CAGCAGAGGTTGTTGAACTG+AGG 0.642991 1_3:-70506195 None:intergenic
ATAGCATTTGATGTGCCAGA+GGG 0.644810 1_3:+70515883 Msa0137860:CDS
TCAACGAACTCTATCCACCA+TGG 0.645821 1_3:+70505525 Msa0137860:CDS
TTGGAAAGCAAAGAATAGAA+GGG 0.645826 1_3:+70506815 Msa0137860:CDS
CTCACCGTCCAATTCATCAC+CGG 0.647057 1_3:+70505326 Msa0137860:CDS
GGAGTATAGACCGAACATGT+AGG 0.649476 1_3:-70514717 None:intergenic
GAACATGTAGGTGGCTCCGG+CGG 0.649974 1_3:-70505390 None:intergenic
GAACATGTAGGTGGCTCCGG+CGG 0.649974 1_3:-70514705 None:intergenic
TTGGAAAGCATAGAATAGAA+GGG 0.652646 1_3:+70512568 Msa0137860:CDS
TTGGAAAGCATAGAATAGAA+GGG 0.653057 1_3:+70516115 Msa0137860:CDS
ATTGTCAAAACTACCCATGG+TGG 0.655386 1_3:-70505539 None:intergenic
CCTATTGCTAAAACTACCCA+AGG 0.655732 1_3:-70511295 None:intergenic
TTAAGCACATATAACCCAAG+TGG 0.655955 1_3:-70506736 None:intergenic
TTAAGCACATATAACCCAAG+TGG 0.655955 1_3:-70516036 None:intergenic
CCGTCCAAGCCATCACCGGA+CGG 0.660584 1_3:+70511083 Msa0137860:CDS
CTGTCCAATTCATCACCGGA+CGG 0.661899 1_3:+70514645 Msa0137860:CDS
ACAAAGGTGACATATACAAG+AGG 0.662424 1_3:+70516256 Msa0137860:CDS
GTTCGTTGACTAGTCCTGCA+AGG 0.663578 1_3:-70514826 None:intergenic
ATTGTTAAAACTACCCAAGG+TGG 0.665582 1_3:-70514854 None:intergenic
AGTTGGTCAACAGCAGCATG+TGG 0.667095 1_3:+70516341 Msa0137860:CDS
AAGAGTAGTAGTTTCACACA+GGG 0.669994 1_3:+70511754 Msa0137860:CDS
GTGTTCAATCCACCAGCCAG+AGG 0.678931 1_3:+70515562 Msa0137860:CDS
GACTGAAACTGAAACAGCAG+AGG 0.678973 1_3:-70506209 None:intergenic
CCGTCCGGTGATGAATTGGA+CGG 0.681338 1_3:-70505330 None:intergenic
TCCAAGCCATCACCGGACGG+TGG 0.681683 1_3:+70511086 Msa0137860:CDS
CACAAAACTATGGCGGCCGT+AGG 0.686030 1_3:+70505263 None:intergenic
AAAGAACGTGGAAAAGACAG+AGG 0.686229 1_3:+70516308 Msa0137860:CDS
GTATAGACCGAACATGTAGG+TGG 0.686930 1_3:-70511152 None:intergenic
CCGTCCAATTCATCACCGGA+CGG 0.687213 1_3:+70505330 Msa0137860:CDS
TCCAATTCATCACCGGACGG+TGG 0.689064 1_3:+70514648 Msa0137860:CDS
GTATAGACCGAACATGTAGG+TGG 0.689369 1_3:-70505399 None:intergenic
GTATAGACCGAACATGTAGG+TGG 0.689369 1_3:-70514714 None:intergenic
TCCAATTCATCACCGGACGG+TGG 0.690622 1_3:+70505333 Msa0137860:CDS
ATTGCTAAAACTACCCAAGG+TGG 0.696114 1_3:-70511292 None:intergenic
AAGAATAGTAGTTTCACACA+GGG 0.699884 1_3:+70515316 Msa0137860:CDS
AATGGTGGAGGTAAAGAACG+AGG 0.714318 1_3:+70512749 Msa0137860:CDS
AATGGTGGAGGTAAAGAACG+TGG 0.730173 1_3:+70516296 Msa0137860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGATCTTTTTTAAAATT+TGG + chr1_3:70510036-70510055 Msa0137860:intron 10.0%
!!! TTGAGATTTAATTTATATTT+GGG - chr1_3:70510069-70510088 None:intergenic 10.0%
!!! TTTGAGATTTAATTTATATT+TGG - chr1_3:70510070-70510089 None:intergenic 10.0%
!!! ATTTATTTATCAAATTTTGT+TGG + chr1_3:70514235-70514254 Msa0137860:intron 10.0%
!!! AGTAAAATTTGTTTTATTTT+GGG - chr1_3:70514418-70514437 None:intergenic 10.0%
!!! TAGTAAAATTTGTTTTATTT+TGG - chr1_3:70514419-70514438 None:intergenic 10.0%
!!! ATTTTACTAATTAATATTGA+TGG + chr1_3:70514430-70514449 Msa0137860:intron 10.0%
!!! ATAATATTTTTGTATATTGT+TGG - chr1_3:70514572-70514591 None:intergenic 10.0%
!! AACAATATACAAAAATATTA+TGG + chr1_3:70514571-70514590 Msa0137860:intron 10.0%
!!! TATGCAACTTTATATAATTT+TGG + chr1_3:70506700-70506719 Msa0137860:CDS 15.0%
!!! TTAATCTGTTCATTTTTAAT+AGG + chr1_3:70507758-70507777 Msa0137860:intron 15.0%
!! AACATGATCATAATAAAATT+CGG + chr1_3:70507782-70507801 Msa0137860:intron 15.0%
!!! GTTTTATTTTAAGGTAAATT+TGG - chr1_3:70509086-70509105 None:intergenic 15.0%
!!! AACTTTAGAAATTCATTTAT+GGG - chr1_3:70509162-70509181 None:intergenic 15.0%
!!! AAACTTTAGAAATTCATTTA+TGG - chr1_3:70509163-70509182 None:intergenic 15.0%
!!! ATTTTTAGACTAAGATATAT+GGG - chr1_3:70509895-70509914 None:intergenic 15.0%
!!! AATTTTTAGACTAAGATATA+TGG - chr1_3:70509896-70509915 None:intergenic 15.0%
!! GAAATCAAAGATATATAATT+TGG + chr1_3:70510177-70510196 Msa0137860:intron 15.0%
!! TCTTTGAATAAAAGATAATT+TGG + chr1_3:70510216-70510235 Msa0137860:intron 15.0%
!! TTCATATTTATACTTAATTG+TGG - chr1_3:70512879-70512898 None:intergenic 15.0%
!!! TCATATTTACACTTTTTTAA+GGG - chr1_3:70512907-70512926 None:intergenic 15.0%
!!! TTCATATTTACACTTTTTTA+AGG - chr1_3:70512908-70512927 None:intergenic 15.0%
!!! TTTTCTATATCTATCTAAAA+AGG + chr1_3:70512950-70512969 Msa0137860:intron 15.0%
!! TTTCTATATCTATCTAAAAA+GGG + chr1_3:70512951-70512970 Msa0137860:intron 15.0%
!! AAACAAAATAGTTTAAATGA+AGG - chr1_3:70513018-70513037 None:intergenic 15.0%
!!! GATTTAAATTTTTATTGTAG+TGG - chr1_3:70513098-70513117 None:intergenic 15.0%
!! TATGATTCTAATATCTTAAA+AGG - chr1_3:70513472-70513491 None:intergenic 15.0%
!! ATGAAAATGAATAGAATAAA+TGG - chr1_3:70513610-70513629 None:intergenic 15.0%
!! TTAATATATCATAAAGATCA+TGG + chr1_3:70513652-70513671 Msa0137860:intron 15.0%
!! AATATACAAAAATATTATGG+CGG + chr1_3:70514574-70514593 Msa0137860:intron 15.0%
!! AATTTCTTGTATATTTCACT+TGG + chr1_3:70505941-70505960 Msa0137860:intron 20.0%
!!! GTAATAATTGGATTTTGTTT+TGG + chr1_3:70506622-70506641 Msa0137860:CDS 20.0%
!!! TTTTTTTTTAAATCAGTGTC+CGG - chr1_3:70507478-70507497 None:intergenic 20.0%
!! ATCTAAATAAGTCATAACTT+CGG - chr1_3:70507663-70507682 None:intergenic 20.0%
!!! GAATCTGTTCATTTTTTTTT+TGG + chr1_3:70507692-70507711 Msa0137860:intron 20.0%
!!! TTTTTTTTTTGGTACAAAAG+AGG + chr1_3:70507703-70507722 Msa0137860:intron 20.0%
!!! TTTTTTTTTGGTACAAAAGA+GGG + chr1_3:70507704-70507723 Msa0137860:intron 20.0%
!!! TTTTAACTTATTGACACATA+AGG + chr1_3:70507834-70507853 Msa0137860:intron 20.0%
!!! CTCATGAGTTTTTTTTTTTT+AGG + chr1_3:70508190-70508209 Msa0137860:intron 20.0%
!!! ATGAGTTTTTTTTTTTTAGG+TGG + chr1_3:70508193-70508212 Msa0137860:intron 20.0%
!!! CATTTCATTTTTTTTCAAAG+TGG + chr1_3:70508729-70508748 Msa0137860:intron 20.0%
!! CAATAAATTTACTTCATTGT+TGG + chr1_3:70508982-70509001 Msa0137860:intron 20.0%
!! GAATATATCATAAGTTATGT+GGG - chr1_3:70509054-70509073 None:intergenic 20.0%
!! TGAATATATCATAAGTTATG+TGG - chr1_3:70509055-70509074 None:intergenic 20.0%
!!! TTTTCTGAAACAAAGTTTTT+TGG + chr1_3:70509202-70509221 Msa0137860:intron 20.0%
!! CATTATTGAGACAATTTATA+TGG - chr1_3:70509233-70509252 None:intergenic 20.0%
!!! TTTTTAGACTAAGATATATG+GGG - chr1_3:70509894-70509913 None:intergenic 20.0%
!!! ACGTAAATATGAATTTTTTG+TGG - chr1_3:70509982-70510001 None:intergenic 20.0%
!!! TTATATATCTTTGATTTCTG+AGG - chr1_3:70510175-70510194 None:intergenic 20.0%
!! TTCCAAATACATCTAAAAAT+AGG - chr1_3:70510325-70510344 None:intergenic 20.0%
!!! ATTTTGTCAAAAAGAATCAT+GGG + chr1_3:70510510-70510529 Msa0137860:intron 20.0%
!!! TTTTTCTTTGTTGTAATTGT+CGG + chr1_3:70510660-70510679 Msa0137860:intron 20.0%
!!! CAAAATCTTTGAAAAAACTA+AGG - chr1_3:70511228-70511247 None:intergenic 20.0%
!!! CTTAGTTTTTTCAAAGATTT+TGG + chr1_3:70511226-70511245 Msa0137860:CDS 20.0%
!! TATTTATTATGATGACTCAA+AGG + chr1_3:70511561-70511580 Msa0137860:intron 20.0%
!!! GTAAGTATTTGGAATTATTT+AGG + chr1_3:70512204-70512223 Msa0137860:intron 20.0%
!!! TATGCAACTTTGTATAATTT+TGG + chr1_3:70512453-70512472 Msa0137860:intron 20.0%
!! GGATAAAATTGAAAATGAAA+AGG - chr1_3:70512997-70513016 None:intergenic 20.0%
!! TCCACGATAAATAATATTAT+GGG + chr1_3:70513700-70513719 Msa0137860:intron 20.0%
!! GTGTGTATGTATATATATAA+AGG + chr1_3:70514312-70514331 Msa0137860:intron 20.0%
!!! CAAAATCTTTGAAAAAACTA+AGG - chr1_3:70511228-70511247 None:intergenic 20.0%
!!! CTTAGTTTTTTCAAAGATTT+TGG + chr1_3:70511226-70511245 Msa0137860:CDS 20.0%
!!! TTTTTGGTTACTTTATGATT+TGG + chr1_3:70514894-70514913 Msa0137860:intron 20.0%
!!! TTACTTTATGATTTGGTTAT+CGG + chr1_3:70514901-70514920 Msa0137860:intron 20.0%
!! TATTTATTATGATGACACAA+AGG + chr1_3:70515123-70515142 Msa0137860:intron 20.0%
!!! GTAATAATTGGATTTTGTTT+TGG + chr1_3:70506622-70506641 Msa0137860:CDS 20.0%
!!! TATGCAACTTTGTATAATTT+TGG + chr1_3:70512453-70512472 Msa0137860:intron 20.0%
!! CAAAGTCTTTGAAAAAACTA+AGG - chr1_3:70505475-70505494 None:intergenic 25.0%
!!! CTTAGTTTTTTCAAAGACTT+TGG + chr1_3:70505473-70505492 Msa0137860:intron 25.0%
! ATGTGTCTTTACATTTGTAT+AGG + chr1_3:70505644-70505663 Msa0137860:intron 25.0%
! TATTTACTATGATGACACAA+AGG + chr1_3:70505808-70505827 Msa0137860:intron 25.0%
!!! AAGGCTTTGATTTTGTTTAT+AGG + chr1_3:70505827-70505846 Msa0137860:intron 25.0%
!!! CTTTGATTTTGTTTATAGGT+TGG + chr1_3:70505831-70505850 Msa0137860:intron 25.0%
! TATGATCATAATTCAGAAGA+AGG + chr1_3:70505985-70506004 Msa0137860:intron 25.0%
!! ACCATTTTGGATCTTTTTTT+GGG - chr1_3:70506234-70506253 None:intergenic 25.0%
! AAAAAAAGATCCAAAATGGT+GGG + chr1_3:70506234-70506253 Msa0137860:CDS 25.0%
! AGATATGTTGATACTATTTG+TGG + chr1_3:70506321-70506340 Msa0137860:CDS 25.0%
! GATATAATGGCAAAAAGTAA+TGG - chr1_3:70506658-70506677 None:intergenic 25.0%
!! CCATTATATCAGAACTTTTT+GGG + chr1_3:70506668-70506687 Msa0137860:CDS 25.0%
! TGACATATACAAGAGATATA+GGG + chr1_3:70506963-70506982 Msa0137860:CDS 25.0%
! ATCCATGTTAAGTAATGTAT+TGG + chr1_3:70507581-70507600 Msa0137860:intron 25.0%
!!! AAGCTTCTTAGTTTTCTTTT+GGG - chr1_3:70507737-70507756 None:intergenic 25.0%
! CAATATACATGGTCATTAAT+GGG - chr1_3:70507956-70507975 None:intergenic 25.0%
! TCAATATACATGGTCATTAA+TGG - chr1_3:70507957-70507976 None:intergenic 25.0%
!! TTCTTTTGTGTCAATATACA+TGG - chr1_3:70507967-70507986 None:intergenic 25.0%
!! TTTCTGCAGAAATACAATTT+TGG - chr1_3:70508056-70508075 None:intergenic 25.0%
! ATATAGACATACTTCACTTT+AGG - chr1_3:70508095-70508114 None:intergenic 25.0%
!!! GAACTTTTTCTTTAACAACA+AGG + chr1_3:70508287-70508306 Msa0137860:intron 25.0%
! GCAATATTTAAAGAGAACAA+AGG - chr1_3:70508563-70508582 None:intergenic 25.0%
!!! TTTTTTTCAAAGTGGTTCTT+AGG + chr1_3:70508737-70508756 Msa0137860:intron 25.0%
!!! TTTTTTCAAAGTGGTTCTTA+GGG + chr1_3:70508738-70508757 Msa0137860:intron 25.0%
! CAATGAAGTAAATTTATTGC+AGG - chr1_3:70508981-70509000 None:intergenic 25.0%
!!! GATCATCTCGTTTTATTTTA+AGG - chr1_3:70509095-70509114 None:intergenic 25.0%
! GATGATCACTTGATAAAATT+CGG + chr1_3:70509108-70509127 Msa0137860:intron 25.0%
!! CTTTGTTTCAGAAAATTCAA+AGG - chr1_3:70509197-70509216 None:intergenic 25.0%
!! GTAAAGATTGTGTTTCTAAA+TGG - chr1_3:70509259-70509278 None:intergenic 25.0%
!! TTTCTTTGATAGACTCTTTT+AGG - chr1_3:70509333-70509352 None:intergenic 25.0%
! GAAAGTCTCTTTATATTCAA+TGG + chr1_3:70509360-70509379 Msa0137860:intron 25.0%
! GAAAGTCTCTTTATATTCAA+TGG + chr1_3:70509360-70509379 Msa0137860:intron 25.0%
!! AAAATCCAAATTCTAAAAGG+TGG - chr1_3:70509702-70509721 None:intergenic 25.0%
! TGGAAAATCCAAATTCTAAA+AGG - chr1_3:70509705-70509724 None:intergenic 25.0%
!! TTTATTTCTCTATGAACATG+AGG - chr1_3:70509761-70509780 None:intergenic 25.0%
! TTAGAATAAAATCCATCTGT+TGG + chr1_3:70509914-70509933 Msa0137860:intron 25.0%
! GAATAAAAGATAATTTGGCT+AGG + chr1_3:70510221-70510240 Msa0137860:intron 25.0%
!!! GTCCTATTTTTAGATGTATT+TGG + chr1_3:70510320-70510339 Msa0137860:intron 25.0%
! TTTGGAAGTTAATCTTAAAG+TGG + chr1_3:70510338-70510357 Msa0137860:intron 25.0%
!! GATTTTGTCAAAAAGAATCA+TGG + chr1_3:70510509-70510528 Msa0137860:intron 25.0%
! AAAACAATGTTTCAAGACAT+TGG + chr1_3:70510579-70510598 Msa0137860:intron 25.0%
!! TTACTCTTGTACATTTTTCT+TGG + chr1_3:70510706-70510725 Msa0137860:intron 25.0%
!! TACTCTTGTACATTTTTCTT+GGG + chr1_3:70510707-70510726 Msa0137860:intron 25.0%
! ATTATTCTCAATTGAGGATT+AGG + chr1_3:70510730-70510749 Msa0137860:intron 25.0%
! ATTATAACCAACTAGATTGA+TGG + chr1_3:70510840-70510859 Msa0137860:intron 25.0%
! AAGTTCCTTAAAACCAATAA+TGG - chr1_3:70510935-70510954 None:intergenic 25.0%
! GTGATATTGTATAAATGAGA+TGG - chr1_3:70510961-70510980 None:intergenic 25.0%
!! AATCTTTGAAAAAACTAAGG+AGG - chr1_3:70511225-70511244 None:intergenic 25.0%
!!! TCTTGCAGTTTTTTTTGTTA+TGG - chr1_3:70511362-70511381 None:intergenic 25.0%
! TTATTGAAGAGAACAAGATT+TGG + chr1_3:70511839-70511858 Msa0137860:CDS 25.0%
!! ACCATTTTGGATCTTTTTTT+GGG - chr1_3:70506234-70506253 None:intergenic 25.0%
! AAAAAAAGATCCAAAATGGT+GGG + chr1_3:70506234-70506253 Msa0137860:CDS 25.0%
! TTGTGTCTTTAGTAAGTATT+TGG + chr1_3:70512193-70512212 Msa0137860:intron 25.0%
!!! AAAATGTTCTGAAACAAATC+CGG - chr1_3:70512241-70512260 None:intergenic 25.0%
! GATATAATGGCAAAAAGTAA+TGG - chr1_3:70506658-70506677 None:intergenic 25.0%
!! TCCAAAAAGTTCTGATATAA+TGG - chr1_3:70512424-70512443 None:intergenic 25.0%
! TGACATATACAAGAGATATA+GGG + chr1_3:70506963-70506982 Msa0137860:CDS 25.0%
! CTACGAAATCTCATTAAAAT+AGG + chr1_3:70513065-70513084 Msa0137860:intron 25.0%
! CAAAAATAAGTCAATATTCC+CGG + chr1_3:70513309-70513328 Msa0137860:intron 25.0%
!! TAATGCCTTAAAATTTTGGA+TGG - chr1_3:70513362-70513381 None:intergenic 25.0%
!!! ATCCAAAATTTTAAGGCATT+AGG + chr1_3:70513361-70513380 Msa0137860:intron 25.0%
!! TACCTAATGCCTTAAAATTT+TGG - chr1_3:70513366-70513385 None:intergenic 25.0%
! GAGGATGATAATATCTTAAA+AGG - chr1_3:70513562-70513581 None:intergenic 25.0%
! CTCCACGATAAATAATATTA+TGG + chr1_3:70513699-70513718 Msa0137860:intron 25.0%
! CCACGATAAATAATATTATG+GGG + chr1_3:70513701-70513720 Msa0137860:intron 25.0%
! GAGAATAAAAACATGAACTT+TGG - chr1_3:70513819-70513838 None:intergenic 25.0%
!!! ACTTACCACCATATTTTTTT+GGG - chr1_3:70513862-70513881 None:intergenic 25.0%
!! AATCTTTGAAAAAACTAAGG+AGG - chr1_3:70511225-70511244 None:intergenic 25.0%
!!! TTTTGGTCTTGCTATTTTTT+TGG - chr1_3:70514930-70514949 None:intergenic 25.0%
! ATGTGTCTTTACATTTGTAT+AGG + chr1_3:70505644-70505663 Msa0137860:intron 25.0%
!!! AAGGCTTTGATTTTGTTTAT+TGG + chr1_3:70505827-70505846 Msa0137860:intron 25.0%
!!! CTTTGATTTTGTTTATTGGT+TGG + chr1_3:70515146-70515165 Msa0137860:intron 25.0%
! AGATATGTTGATACTATTTG+TGG + chr1_3:70506321-70506340 Msa0137860:CDS 25.0%
! GATATAATGGCAAAAAGTAA+TGG - chr1_3:70506658-70506677 None:intergenic 25.0%
!! CCATTATATCAGAACTTTTT+GGG + chr1_3:70506668-70506687 Msa0137860:CDS 25.0%
!!! AAGTGTTGTTTTTATGTCTG+GGG - chr1_3:70505426-70505445 None:intergenic 30.0%
!!! CAAGTGTTGTTTTTATGTCT+GGG - chr1_3:70505427-70505446 None:intergenic 30.0%
! AGTCTTTGAAAAAACTAAGG+AGG - chr1_3:70505472-70505491 None:intergenic 30.0%
TCTTTGGTTACTTCATGATT+TGG + chr1_3:70505579-70505598 Msa0137860:CDS 30.0%
!!! TTGTGGTCTTGCTATTTTTT+TGG - chr1_3:70505615-70505634 None:intergenic 30.0%
TACTTGTGTTAAGAATTTCC+CGG + chr1_3:70505706-70505725 Msa0137860:intron 30.0%
AACAGGTTTCATATATCGAA+TGG - chr1_3:70505891-70505910 None:intergenic 30.0%
TTCGACAAGTTAATGAACTT+AGG + chr1_3:70505909-70505928 Msa0137860:intron 30.0%
TCGACAAGTTAATGAACTTA+GGG + chr1_3:70505910-70505929 Msa0137860:intron 30.0%
GTTCTCTTCAATGAAAACAA+CGG - chr1_3:70506080-70506099 None:intergenic 30.0%
TCATTGAAGAGAACAAGATT+TGG + chr1_3:70506086-70506105 Msa0137860:CDS 30.0%
TCCCAAAAAAAGATCCAAAA+TGG + chr1_3:70506230-70506249 Msa0137860:CDS 30.0%
! CACCATTTTGGATCTTTTTT+TGG - chr1_3:70506235-70506254 None:intergenic 30.0%
CAAAAAAAGATCCAAAATGG+TGG + chr1_3:70506233-70506252 Msa0137860:CDS 30.0%
! TTAACGGCAATTGATAATCT+TGG + chr1_3:70506370-70506389 Msa0137860:CDS 30.0%
! ATTGATAATCTTGGTCAGAT+AGG + chr1_3:70506379-70506398 Msa0137860:CDS 30.0%
!! AAAGTGCTTATGCTTTTCTT+TGG - chr1_3:70506421-70506440 None:intergenic 30.0%
TTGTGTCTTTAGTAAGCATT+TGG + chr1_3:70506440-70506459 Msa0137860:CDS 30.0%
! GTAAGCATTTGGAATTATCT+AGG + chr1_3:70506451-70506470 Msa0137860:CDS 30.0%
AGAGTTAAAGTAAGCATAAG+AGG - chr1_3:70506535-70506554 None:intergenic 30.0%
TACGTAGCTTCAGTAATAAT+TGG + chr1_3:70506610-70506629 Msa0137860:CDS 30.0%
! GCCATTATATCAGAACTTTT+TGG + chr1_3:70506667-70506686 Msa0137860:CDS 30.0%
! CCCAAAAAGTTCTGATATAA+TGG - chr1_3:70506671-70506690 None:intergenic 30.0%
TTGGAAAGCAAAGAATAGAA+GGG + chr1_3:70506815-70506834 Msa0137860:CDS 30.0%
!!! ATTACAGCTGCAACATTTTT+TGG + chr1_3:70506889-70506908 Msa0137860:CDS 30.0%
!!! TGCTGTTGTTTCACTTATTT+TGG + chr1_3:70506912-70506931 Msa0137860:CDS 30.0%
!!! TGTTGTTTCACTTATTTTGG+TGG + chr1_3:70506915-70506934 Msa0137860:CDS 30.0%
GTGACATATACAAGAGATAT+AGG + chr1_3:70506962-70506981 Msa0137860:CDS 30.0%
CAACTTAGAATTAGGACAAA+TGG + chr1_3:70507067-70507086 Msa0137860:intron 30.0%
AGAATTAGGACAAATGGTTA+AGG + chr1_3:70507073-70507092 Msa0137860:intron 30.0%
TGTGCTAACAATTATTCTGT+TGG + chr1_3:70507362-70507381 Msa0137860:intron 30.0%
!! AAATTGGTTCGTTGGATTAA+CGG + chr1_3:70507444-70507463 Msa0137860:intron 30.0%
CACCAATACATTACTTAACA+TGG - chr1_3:70507586-70507605 None:intergenic 30.0%
TAACTTCGGAGTTGAAATAT+TGG - chr1_3:70507649-70507668 None:intergenic 30.0%
!! GAAGCTTCTTAGTTTTCTTT+TGG - chr1_3:70507738-70507757 None:intergenic 30.0%
AAAATTCGGAATCAACCAAA+AGG + chr1_3:70507796-70507815 Msa0137860:intron 30.0%
AAATTCGGAATCAACCAAAA+GGG + chr1_3:70507797-70507816 Msa0137860:intron 30.0%
!! TGTTTGATTTTTGTCCCTTT+TGG - chr1_3:70507814-70507833 None:intergenic 30.0%
AATGCGTAACTATAAGATTG+TGG - chr1_3:70507904-70507923 None:intergenic 30.0%
TGGGTTTAATTAGCTCATAT+GGG - chr1_3:70507937-70507956 None:intergenic 30.0%
ATGGGTTTAATTAGCTCATA+TGG - chr1_3:70507938-70507957 None:intergenic 30.0%
ATTGACACAAAAGAATGACA+TGG + chr1_3:70507972-70507991 Msa0137860:intron 30.0%
TCACTTTAGGTAAGGTTTAA+GGG - chr1_3:70508082-70508101 None:intergenic 30.0%
TTCACTTTAGGTAAGGTTTA+AGG - chr1_3:70508083-70508102 None:intergenic 30.0%
! TTTTGTGACAGTAAATCAAC+AGG - chr1_3:70508369-70508388 None:intergenic 30.0%
AATTGCGAAACTTTGTTACA+GGG - chr1_3:70508445-70508464 None:intergenic 30.0%
! TATAGTGTCTCTGATTTTGT+TGG - chr1_3:70508493-70508512 None:intergenic 30.0%
! TTTCTTATGCATCGACAATT+GGG - chr1_3:70508702-70508721 None:intergenic 30.0%
! ATTTCTTATGCATCGACAAT+TGG - chr1_3:70508703-70508722 None:intergenic 30.0%
ATGTCTTCGTCATATAAAAC+CGG + chr1_3:70509013-70509032 Msa0137860:intron 30.0%
TGAACTTCGATTATATCTGA+TGG - chr1_3:70509284-70509303 None:intergenic 30.0%
AAAGAGTCTATCAAAGAAAC+CGG + chr1_3:70509334-70509353 Msa0137860:intron 30.0%
ATATAAAGAGACTTTCTCTC+CGG - chr1_3:70509356-70509375 None:intergenic 30.0%
GGTGTGAAACTCAATATTTA+AGG - chr1_3:70509459-70509478 None:intergenic 30.0%
ATATAAAGAGACTTTCTCTC+CGG - chr1_3:70509356-70509375 None:intergenic 30.0%
GGTGTGAAACTCAATATTTA+AGG - chr1_3:70509459-70509478 None:intergenic 30.0%
!!! TTGATCCACCTTTTAGAATT+TGG + chr1_3:70509694-70509713 Msa0137860:intron 30.0%
ACACAAGCAAGTAAATAGAA+AGG + chr1_3:70509938-70509957 Msa0137860:intron 30.0%
! ATGTTTCAAGACATTGGTTA+TGG + chr1_3:70510585-70510604 Msa0137860:intron 30.0%
GTTATGGTCTAAATCATTTG+TGG + chr1_3:70510601-70510620 Msa0137860:intron 30.0%
ACACATGAAATCACTCAATT+GGG - chr1_3:70510632-70510651 None:intergenic 30.0%
TACACATGAAATCACTCAAT+TGG - chr1_3:70510633-70510652 None:intergenic 30.0%
!!! TTGTTGTAATTGTCGGTTTT+TGG + chr1_3:70510667-70510686 Msa0137860:intron 30.0%
! GATTAGGTGATTTGTATCTT+AGG + chr1_3:70510746-70510765 Msa0137860:intron 30.0%
TAAAACTATTCAAGCACAAG+AGG - chr1_3:70510793-70510812 None:intergenic 30.0%
TGCATATGAAGAAAACGATA+TGG - chr1_3:70510882-70510901 None:intergenic 30.0%
!! ACAAATAAGAGCACCATTAT+TGG + chr1_3:70510919-70510938 Msa0137860:intron 30.0%
ATCCAAGTAAATATGGCAAT+TGG + chr1_3:70511028-70511047 Msa0137860:intron 30.0%
!! AAAGATTTTGGTAGCAATGT+TGG + chr1_3:70511238-70511257 Msa0137860:CDS 30.0%
! GGTGCTATACTTAATTTCTT+TGG + chr1_3:70511316-70511335 Msa0137860:intron 30.0%
TCTTTGGTTACTTCATGATT+TGG + chr1_3:70505579-70505598 Msa0137860:CDS 30.0%
ATGTGTCTTTACATTTGCAT+AGG + chr1_3:70511397-70511416 Msa0137860:intron 30.0%
! GGAATTCTAAAAGGATATCT+TGG + chr1_3:70511502-70511521 Msa0137860:intron 30.0%
!! AAGGCTTTGATTTTGCTTAT+AGG + chr1_3:70511580-70511599 Msa0137860:intron 30.0%
!! CTTTGATTTTGCTTATAGGT+TGG + chr1_3:70511584-70511603 Msa0137860:intron 30.0%
CAATAAAAACAACAGCAAGT+GGG - chr1_3:70511825-70511844 None:intergenic 30.0%
TCAATAAAAACAACAGCAAG+TGG - chr1_3:70511826-70511845 None:intergenic 30.0%
TCCCAAAAAAAGATCCAAAA+TGG + chr1_3:70506230-70506249 Msa0137860:CDS 30.0%
! CACCATTTTGGATCTTTTTT+TGG - chr1_3:70506235-70506254 None:intergenic 30.0%
CAAAAAAAGATCCAAAATGG+TGG + chr1_3:70506233-70506252 Msa0137860:CDS 30.0%
AGACATGTTGATACTATTTG+TGG + chr1_3:70512074-70512093 Msa0137860:CDS 30.0%
!! AAAGTGCTTATGCTTTTCTT+TGG - chr1_3:70506421-70506440 None:intergenic 30.0%
!! GTGATTATCGGATTTTGTTT+TGG + chr1_3:70512375-70512394 Msa0137860:CDS 30.0%
! GCCATTATATCAGAACTTTT+TGG + chr1_3:70506667-70506686 Msa0137860:CDS 30.0%
TTAAGCACATATAAGCCAAT+TGG - chr1_3:70512492-70512511 None:intergenic 30.0%
CAAAGAAGCTAAGAAACAAT+TGG + chr1_3:70512539-70512558 Msa0137860:CDS 30.0%
! TTGGAAAGCATAGAATAGAA+GGG + chr1_3:70512568-70512587 Msa0137860:CDS 30.0%
!! TGCTGTTGTTAACCTTATTT+TGG + chr1_3:70512665-70512684 Msa0137860:CDS 30.0%
!!! TGTTGTTAACCTTATTTTGG+TGG + chr1_3:70512668-70512687 Msa0137860:CDS 30.0%
! AGGACAAGAAAGTTTTACAA+AGG + chr1_3:70512693-70512712 Msa0137860:CDS 30.0%
GTGACATATACAAGAGATAT+AGG + chr1_3:70506962-70506981 Msa0137860:CDS 30.0%
! TAAAATTTTGGATGGAGATG+TGG - chr1_3:70513354-70513373 None:intergenic 30.0%
! CATCTCCATCCAAAATTTTA+AGG + chr1_3:70513354-70513373 Msa0137860:intron 30.0%
GCTATAAATGTGCAAAATGT+TGG - chr1_3:70513412-70513431 None:intergenic 30.0%
TAGAATCATAATATCCACCA+TGG + chr1_3:70513482-70513501 Msa0137860:intron 30.0%
AATATCATGTTGAGAATCCA+TGG - chr1_3:70513502-70513521 None:intergenic 30.0%
TAGAATCATAATATCCACCA+TGG + chr1_3:70513482-70513501 Msa0137860:intron 30.0%
ACAACAAAGATAGAATGAAG+AGG - chr1_3:70513581-70513600 None:intergenic 30.0%
CCCCATAATATTATTTATCG+TGG - chr1_3:70513704-70513723 None:intergenic 30.0%
TAGTAAACCTTTCACTAGAA+AGG - chr1_3:70513745-70513764 None:intergenic 30.0%
! TGACTATTTCTTTGTTTCAC+AGG + chr1_3:70513786-70513805 Msa0137860:intron 30.0%
TTCATGCTCCCAAAAAAATA+TGG + chr1_3:70513851-70513870 Msa0137860:intron 30.0%
!!! GACTTACCACCATATTTTTT+TGG - chr1_3:70513863-70513882 None:intergenic 30.0%
! GTGGTAAGTCTCTTTAATTT+AGG + chr1_3:70513873-70513892 Msa0137860:intron 30.0%
! TCTCTTTAATTTAGGTGTCA+AGG + chr1_3:70513881-70513900 Msa0137860:intron 30.0%
CTAATTTCTACTGTAAAGTG+AGG - chr1_3:70513996-70514015 None:intergenic 30.0%
! CTTTTTGCAACCTTTTGTAA+AGG + chr1_3:70514128-70514147 Msa0137860:intron 30.0%
TTTAGTCAACAAGATTGTCA+TGG - chr1_3:70514280-70514299 None:intergenic 30.0%
CAATTAAATAGAGAGAGAGA+GGG - chr1_3:70514474-70514493 None:intergenic 30.0%
TCAATTAAATAGAGAGAGAG+AGG - chr1_3:70514475-70514494 None:intergenic 30.0%
TACAAAAATATTATGGCGGT+TGG + chr1_3:70514578-70514597 Msa0137860:intron 30.0%
!!! AAGTGTTGTTTTTATGTCAC+CGG - chr1_3:70514741-70514760 None:intergenic 30.0%
!!! GGTGCTATACTAAACTTTTT+TGG + chr1_3:70514878-70514897 Msa0137860:intron 30.0%
AAATAGCAAGACCAAAAGTT+TGG + chr1_3:70514933-70514952 Msa0137860:intron 30.0%
AACAGGTTTCATATATCGAA+TGG - chr1_3:70505891-70505910 None:intergenic 30.0%
AAGAATAGTAGTTTCACACA+GGG + chr1_3:70515316-70515335 Msa0137860:CDS 30.0%
GTTCTCTTCAATGAAAACAA+CGG - chr1_3:70506080-70506099 None:intergenic 30.0%
TCATTGAAGAGAACAAGATT+TGG + chr1_3:70506086-70506105 Msa0137860:CDS 30.0%
AAAAAAAGATCCAAAGTGGT+GGG + chr1_3:70515534-70515553 Msa0137860:CDS 30.0%
TATTGTATAATCATCACCTC+TGG - chr1_3:70512034-70512053 None:intergenic 30.0%
! TTGACAGCAATTGATAATCT+TGG + chr1_3:70515670-70515689 Msa0137860:CDS 30.0%
! ATTGATAATCTTGGTCAGAT+AGG + chr1_3:70506379-70506398 Msa0137860:CDS 30.0%
!! AAAGTGCTTATGCTTTTCTT+TGG - chr1_3:70506421-70506440 None:intergenic 30.0%
TTGTGTCTTTAGTAAGCATT+TGG + chr1_3:70506440-70506459 Msa0137860:CDS 30.0%
! GTAAGCATTTGGAATTATCT+AGG + chr1_3:70506451-70506470 Msa0137860:CDS 30.0%
AGAGTTAAAGTAAGCATAAG+AGG - chr1_3:70506535-70506554 None:intergenic 30.0%
TACGTAGCTTCAGTAATAAT+TGG + chr1_3:70506610-70506629 Msa0137860:CDS 30.0%
! GCCATTATATCAGAACTTTT+TGG + chr1_3:70506667-70506686 Msa0137860:CDS 30.0%
! CCCAAAAAGTTCTGATATAA+TGG - chr1_3:70506671-70506690 None:intergenic 30.0%
CAAAGAAGCTAAGAAACAAT+TGG + chr1_3:70512539-70512558 Msa0137860:CDS 30.0%
! TTGGAAAGCATAGAATAGAA+GGG + chr1_3:70512568-70512587 Msa0137860:CDS 30.0%
!!! TGCTGTTGTTTCACTTATTT+TGG + chr1_3:70506912-70506931 Msa0137860:CDS 30.0%
!!! TGTTGTTTCACTTATTTTGG+TGG + chr1_3:70506915-70506934 Msa0137860:CDS 30.0%
! AGGACAAGAAAGTTTTACAA+AGG + chr1_3:70512693-70512712 Msa0137860:CDS 30.0%
AACACCAATGGAATTACCTA+CGG - chr1_3:70505282-70505301 None:intergenic 35.0%
! TTTTGCCTCCTTTCTAATCA+TGG + chr1_3:70505364-70505383 Msa0137860:CDS 35.0%
!!! CCAAGTGTTGTTTTTATGTC+TGG - chr1_3:70505428-70505447 None:intergenic 35.0%
CCAGACATAAAAACAACACT+TGG + chr1_3:70505425-70505444 Msa0137860:CDS 35.0%
!! GGTGCTATTCTCAATTTCTT+TGG + chr1_3:70505563-70505582 Msa0137860:CDS 35.0%
AAATAGCAAGACCACAAGTT+TGG + chr1_3:70505618-70505637 Msa0137860:intron 35.0%
GGAATTCTTAAAGGCTATGT+TGG + chr1_3:70505749-70505768 Msa0137860:intron 35.0%
AATGGTTCGAAGAAAAGCAA+AGG - chr1_3:70505873-70505892 None:intergenic 35.0%
!! AGTTCATTAACTTGTCGAAC+AGG - chr1_3:70505908-70505927 None:intergenic 35.0%
!! TATATTTCACTTGGTCTTGC+TGG + chr1_3:70505950-70505969 Msa0137860:intron 35.0%
! AGTTTTTCACAGAGTGAGTA+TGG + chr1_3:70506010-70506029 Msa0137860:intron 35.0%
! GCAGAGTAAAAAACTTGCTT+TGG + chr1_3:70506108-70506127 Msa0137860:CDS 35.0%
GTATAATCATTACCTCTTGC+TGG - chr1_3:70506277-70506296 None:intergenic 35.0%
CTATTTGTGGCATGTATTTG+TGG + chr1_3:70506334-70506353 Msa0137860:CDS 35.0%
!!! GATTTTGTTTTGGTGCTCAA+TGG + chr1_3:70506632-70506651 Msa0137860:CDS 35.0%
TTAAGCACATATAACCCAAG+TGG - chr1_3:70506739-70506758 None:intergenic 35.0%
CAAAGAAGCAAAGAAGCAAT+TGG + chr1_3:70506786-70506805 Msa0137860:CDS 35.0%
CTTGGAAAGCAAAGAATAGA+AGG + chr1_3:70506814-70506833 Msa0137860:CDS 35.0%
!!! TTTCACTTATTTTGGTGGCT+AGG + chr1_3:70506920-70506939 Msa0137860:CDS 35.0%
! AGGACCAGAAAGTTTTACAA+AGG + chr1_3:70506940-70506959 Msa0137860:CDS 35.0%
GTCACCTTTGTAAAACTTTC+TGG - chr1_3:70506947-70506966 None:intergenic 35.0%
ATATAGGGAAGAAGCTGAAA+TGG + chr1_3:70506978-70506997 Msa0137860:CDS 35.0%
ACAGAAGAAGATGACAAAGT+TGG + chr1_3:70507024-70507043 Msa0137860:intron 35.0%
TGTTGCGACAACTTAGAATT+AGG + chr1_3:70507059-70507078 Msa0137860:intron 35.0%
AGTTGTGCATCTACTTCAAT+CGG + chr1_3:70507399-70507418 Msa0137860:intron 35.0%
!! AATTGGTTCGTTGGATTAAC+GGG + chr1_3:70507445-70507464 Msa0137860:intron 35.0%
ATCAACGTGCATGTAAGTAA+AGG - chr1_3:70507525-70507544 None:intergenic 35.0%
TTTACTTACATGCACGTTGA+TGG + chr1_3:70507524-70507543 Msa0137860:intron 35.0%
TGGATTCGTTCAAACATGTT+TGG - chr1_3:70507566-70507585 None:intergenic 35.0%
ATATGATTTCGATTCCACAG+AGG - chr1_3:70507626-70507645 None:intergenic 35.0%
!! TTAGTTTTCTTTTGGGCCTT+TGG - chr1_3:70507730-70507749 None:intergenic 35.0%
ATAAGATTGTGGTATAGTCG+AGG - chr1_3:70507893-70507912 None:intergenic 35.0%
GACATACTTCACTTTAGGTA+AGG - chr1_3:70508090-70508109 None:intergenic 35.0%
TTTAAGTGGATCTGCAACAA+TGG + chr1_3:70508225-70508244 Msa0137860:intron 35.0%
CAATTGCGAAACTTTGTTAC+AGG - chr1_3:70508446-70508465 None:intergenic 35.0%
TTAGATCATCTTGAGGTCAT+TGG - chr1_3:70508517-70508536 None:intergenic 35.0%
GTAATCCATGATTAGAGCAT+CGG - chr1_3:70508606-70508625 None:intergenic 35.0%
TAGATATAGTGTACGGTACT+GGG - chr1_3:70508648-70508667 None:intergenic 35.0%
ATGCGTCTAGATATAGTGTA+CGG - chr1_3:70508655-70508674 None:intergenic 35.0%
ATGCAAGACAATAAACGATG+TGG - chr1_3:70508806-70508825 None:intergenic 35.0%
TGTCTTCGTCATATAAAACC+GGG + chr1_3:70509014-70509033 Msa0137860:intron 35.0%
!!! TTTTAGGACTACAATGGCAT+TGG - chr1_3:70509317-70509336 None:intergenic 35.0%
!!! AGACTCTTTTAGGACTACAA+TGG - chr1_3:70509323-70509342 None:intergenic 35.0%
ATATTGAGTTTCACACCTTG+TGG + chr1_3:70509462-70509481 Msa0137860:intron 35.0%
! GATTTTATCCTATTGCCACA+AGG - chr1_3:70509480-70509499 None:intergenic 35.0%
AACGCCATTATCAAAGAAAC+CGG + chr1_3:70509503-70509522 Msa0137860:intron 35.0%
ATATTGAGTTTCACACCTTG+TGG + chr1_3:70509462-70509481 Msa0137860:intron 35.0%
! GATTTTATCCTATTGCCACA+AGG - chr1_3:70509480-70509499 None:intergenic 35.0%
ACTAAGATATATGGGGACAA+TGG - chr1_3:70509887-70509906 None:intergenic 35.0%
GAGAGAAACTGAATTCTAGA+TGG - chr1_3:70510132-70510151 None:intergenic 35.0%
TAGAATTCAGTTTCTCTCAC+AGG + chr1_3:70510134-70510153 Msa0137860:intron 35.0%
!! AGGCGAGGTGTTTTAAATTT+TGG + chr1_3:70510241-70510260 Msa0137860:intron 35.0%
AAACAAAAGCCACACAATTG+TGG - chr1_3:70510409-70510428 None:intergenic 35.0%
!! TGGCTTTTGTTTCTCATCAA+AGG + chr1_3:70510417-70510436 Msa0137860:intron 35.0%
!! TTTCTCATCAAAGGTGTCAA+TGG + chr1_3:70510426-70510445 Msa0137860:intron 35.0%
TAGCGTGCATTTGACAAATT+TGG + chr1_3:70510470-70510489 Msa0137860:intron 35.0%
TCAAAAAGAATCATGGGTAG+CGG + chr1_3:70510516-70510535 Msa0137860:intron 35.0%
CTTGGGATTATTCTCAATTG+AGG + chr1_3:70510724-70510743 Msa0137860:intron 35.0%
ATAACCAACTAGATTGATGG+AGG + chr1_3:70510843-70510862 Msa0137860:intron 35.0%
TAGATTGATGGAGGAAACAT+AGG + chr1_3:70510852-70510871 Msa0137860:intron 35.0%
!!! GAGCACCATTATTGGTTTTA+AGG + chr1_3:70510927-70510946 Msa0137860:intron 35.0%
GCTTGCAATCCAAGTAAATA+TGG + chr1_3:70511021-70511040 Msa0137860:intron 35.0%
CACCAATTGCCATATTTACT+TGG - chr1_3:70511033-70511052 None:intergenic 35.0%
! AAGTGTTTCTTTTATGTCGC+TGG - chr1_3:70511179-70511198 None:intergenic 35.0%
AGCGACATAAAAGAAACACT+TGG + chr1_3:70511178-70511197 Msa0137860:CDS 35.0%
AACACAAGTAACAAGTGAAC+CGG - chr1_3:70505696-70505715 None:intergenic 35.0%
!!! GCTGTTTTGGGAATTCTAAA+AGG + chr1_3:70511493-70511512 Msa0137860:intron 35.0%
!! AAAGGATATCTTGGTCTTAG+TGG + chr1_3:70511511-70511530 Msa0137860:intron 35.0%
!! TCGCTTTTCTTAGAACCATT+CGG + chr1_3:70511626-70511645 Msa0137860:intron 35.0%
AACAGGTTTCATATACCGAA+TGG - chr1_3:70511644-70511663 None:intergenic 35.0%
AAGAGTAGTAGTTTCACACA+GGG + chr1_3:70511754-70511773 Msa0137860:CDS 35.0%
! GAAGAGTAAAAAGCTTGCTT+TGG + chr1_3:70511861-70511880 Msa0137860:CDS 35.0%
! AACATATCTTCCCACCATTT+TGG - chr1_3:70512000-70512019 None:intergenic 35.0%
CTATTTGTGGCATGTATTTG+TGG + chr1_3:70506334-70506353 Msa0137860:CDS 35.0%
!! TTGACAGCAGTTGATAATCT+TGG + chr1_3:70512123-70512142 Msa0137860:CDS 35.0%
!! GTTGATAATCTTGGTCAGAT+AGG + chr1_3:70512132-70512151 Msa0137860:CDS 35.0%
!! TATTTAGGACGTGTTTTCTC+CGG + chr1_3:70512219-70512238 Msa0137860:intron 35.0%
! AGAGTCAAAGAAAGCATAAG+AGG - chr1_3:70512288-70512307 None:intergenic 35.0%
TATGCAGCTTCAGTGATTAT+CGG + chr1_3:70512363-70512382 Msa0137860:CDS 35.0%
!!! GATTTTGTTTTGGTGCTCAA+TGG + chr1_3:70506632-70506651 Msa0137860:CDS 35.0%
! GGAAGTATAACAAGTCCAAT+TGG + chr1_3:70512474-70512493 Msa0137860:intron 35.0%
!! AAGAAACAATTGGAAGCACT+TGG + chr1_3:70512549-70512568 Msa0137860:CDS 35.0%
! CTTGGAAAGCATAGAATAGA+AGG + chr1_3:70512567-70512586 Msa0137860:CDS 35.0%
!!! TTAACCTTATTTTGGTGGCT+AGG + chr1_3:70512673-70512692 Msa0137860:CDS 35.0%
ATATAGGGAAGAAGCTGAAA+TGG + chr1_3:70506978-70506997 Msa0137860:CDS 35.0%
ACAGAAGAAGATGACAAAGT+TGG + chr1_3:70507024-70507043 Msa0137860:intron 35.0%
CAACTTAGAAATAGGGCAAA+TGG + chr1_3:70512810-70512829 Msa0137860:intron 35.0%
AGAAATAGGGCAAATGGTTA+AGG + chr1_3:70512816-70512835 Msa0137860:intron 35.0%
TGATCTATGACATGGGATAT+CGG - chr1_3:70512851-70512870 None:intergenic 35.0%
GGATCTATGATCTATGACAT+GGG - chr1_3:70512858-70512877 None:intergenic 35.0%
TGGATCTATGATCTATGACA+TGG - chr1_3:70512859-70512878 None:intergenic 35.0%
!!! TATTGGTTTTCAAGTGTGAG+TGG - chr1_3:70513160-70513179 None:intergenic 35.0%
TTATACTTGATCCAAGCACT+AGG + chr1_3:70513210-70513229 Msa0137860:intron 35.0%
TCATTCATTCAGTGTATGAG+TGG - chr1_3:70513448-70513467 None:intergenic 35.0%
! CAATAAGCCTTTCTAGTGAA+AGG + chr1_3:70513735-70513754 Msa0137860:intron 35.0%
ATGCTCCCAAAAAAATATGG+TGG + chr1_3:70513854-70513873 Msa0137860:intron 35.0%
CTCTACTATAAGGTCAAGAA+AGG + chr1_3:70513931-70513950 Msa0137860:intron 35.0%
! ACCTTTTGTAAAGGTGATGT+TGG + chr1_3:70514137-70514156 Msa0137860:intron 35.0%
TCCAACATCACCTTTACAAA+AGG - chr1_3:70514141-70514160 None:intergenic 35.0%
! TTTTGTAAAGGTGATGTTGG+AGG + chr1_3:70514140-70514159 Msa0137860:intron 35.0%
TATTAACTCATCTGCTGATG+AGG - chr1_3:70514170-70514189 None:intergenic 35.0%
GGTGACATAAAAACAACACT+TGG + chr1_3:70514740-70514759 Msa0137860:CDS 35.0%
TAAGGAGGTTTAGTGTACTT+TGG - chr1_3:70514772-70514791 None:intergenic 35.0%
!! AAAGATTTTGGTAGCAACGT+TGG + chr1_3:70514800-70514819 Msa0137860:CDS 35.0%
ATTGTTAAAACTACCCAAGG+TGG - chr1_3:70514857-70514876 None:intergenic 35.0%
CCTATTGTTAAAACTACCCA+AGG - chr1_3:70514860-70514879 None:intergenic 35.0%
!!! CCTTGGGTAGTTTTAACAAT+AGG + chr1_3:70514857-70514876 Msa0137860:intron 35.0%
! AGACACATTTGCCAAACTTT+TGG - chr1_3:70514947-70514966 None:intergenic 35.0%
! TTCTCAGTCTTTTGCAAACA+CGG + chr1_3:70505673-70505692 Msa0137860:intron 35.0%
GGAATTCTTAAAGGCTATGT+TGG + chr1_3:70505749-70505768 Msa0137860:intron 35.0%
AAAGCAAAAGAAATAGCAGC+AGG - chr1_3:70515175-70515194 None:intergenic 35.0%
TCGACAAGTTAATGAGCTTA+AGG + chr1_3:70515225-70515244 Msa0137860:intron 35.0%
GTGTGAAACTACTATTCTTC+TGG - chr1_3:70515315-70515334 None:intergenic 35.0%
GAAGAATAGTAGTTTCACAC+AGG + chr1_3:70515315-70515334 Msa0137860:intron 35.0%
! GCAGAGTAAAAAACTAGCTT+TGG + chr1_3:70515423-70515442 Msa0137860:CDS 35.0%
CTCCAAAAAAAGATCCAAAG+TGG + chr1_3:70515530-70515549 Msa0137860:CDS 35.0%
!!! CACCACTTTGGATCTTTTTT+TGG - chr1_3:70515535-70515554 None:intergenic 35.0%
CAAAAAAAGATCCAAAGTGG+TGG + chr1_3:70515533-70515552 Msa0137860:CDS 35.0%
CTATTTGTGGCATGTATTTG+TGG + chr1_3:70506334-70506353 Msa0137860:CDS 35.0%
!!! GATTTTGTTTTGGTGCTCAA+TGG + chr1_3:70506632-70506651 Msa0137860:CDS 35.0%
TTAAGCACATATAACCCAAG+TGG - chr1_3:70506739-70506758 None:intergenic 35.0%
!! AAGAAACAATTGGAAGCACT+TGG + chr1_3:70512549-70512568 Msa0137860:CDS 35.0%
! CTTGGAAAGCATAGAATAGA+AGG + chr1_3:70512567-70512586 Msa0137860:CDS 35.0%
TGCAGCGGTAATAATAATGA+AGG - chr1_3:70516181-70516200 None:intergenic 35.0%
!!! ATTACCGCTGCAACATTTTT+TGG + chr1_3:70516189-70516208 Msa0137860:CDS 35.0%
!!! TTTCACTTATTTTGGTGGCT+AGG + chr1_3:70506920-70506939 Msa0137860:CDS 35.0%
ACAAAGGTGACATATACAAG+AGG + chr1_3:70506956-70506975 Msa0137860:CDS 35.0%
! GGTAATTCCATTGGTGTTCA+TGG + chr1_3:70505284-70505303 Msa0137860:CDS 40.0%
! TTCCATTGGTGTTCATGGTT+TGG + chr1_3:70505289-70505308 Msa0137860:CDS 40.0%
! TCCATTGGTGTTCATGGTTT+GGG + chr1_3:70505290-70505309 Msa0137860:CDS 40.0%
TAAGGAGGTTTAGTGTGCTT+TGG - chr1_3:70505457-70505476 None:intergenic 40.0%
! AAAGACTTTGGTAGCAACGT+TGG + chr1_3:70505485-70505504 Msa0137860:intron 40.0%
! GTTCGTTGATTAGTCCTGAA+AGG - chr1_3:70505514-70505533 None:intergenic 40.0%
ATTGTCAAAACTACCCATGG+TGG - chr1_3:70505542-70505561 None:intergenic 40.0%
CCTATTGTCAAAACTACCCA+TGG - chr1_3:70505545-70505564 None:intergenic 40.0%
!!! CCATGGGTAGTTTTGACAAT+AGG + chr1_3:70505542-70505561 Msa0137860:CDS 40.0%
AGACACATTTGCCAAACTTG+TGG - chr1_3:70505632-70505651 None:intergenic 40.0%
! TCTCAGTCTTTTGCAAACAC+TGG + chr1_3:70505674-70505693 Msa0137860:intron 40.0%
!!! GCGGTTTTGGGAATTCTTAA+AGG + chr1_3:70505740-70505759 Msa0137860:intron 40.0%
!! AAAGGCTATGTTGGTCTTAG+TGG + chr1_3:70505758-70505777 Msa0137860:intron 40.0%
AAAGCAAAGGAAATAGCAGC+AGG - chr1_3:70505860-70505879 None:intergenic 40.0%
TCAATGAAAACAACGGCAAG+TGG - chr1_3:70506073-70506092 None:intergenic 40.0%
! GTTACTATTTGCACTGGTGA+AGG - chr1_3:70506139-70506158 None:intergenic 40.0%
CCTTCTGTTACTATTTGCAC+TGG - chr1_3:70506145-70506164 None:intergenic 40.0%
CCAGTGCAAATAGTAACAGA+AGG + chr1_3:70506142-70506161 Msa0137860:CDS 40.0%
TGTTGAACTGAGGTTGTTGT+TGG - chr1_3:70506188-70506207 None:intergenic 40.0%
! AACACATCTTCCCACCATTT+TGG - chr1_3:70506247-70506266 None:intergenic 40.0%
TAATCATTACCTCTTGCTGG+TGG - chr1_3:70506274-70506293 None:intergenic 40.0%
!! TGGTGTTGGTGGAACTTTAA+CGG + chr1_3:70506354-70506373 Msa0137860:CDS 40.0%
!! TATCTAGGACGTGTTTTCTC+AGG + chr1_3:70506466-70506485 Msa0137860:CDS 40.0%
AAAGTAAGCATAAGAGGACG+AGG - chr1_3:70506529-70506548 None:intergenic 40.0%
AACTCTCTTTGTCTCATGTG+TGG + chr1_3:70506549-70506568 Msa0137860:CDS 40.0%
ACTCTCTTTGTCTCATGTGT+GGG + chr1_3:70506550-70506569 Msa0137860:CDS 40.0%
GCACATCAAATGCTATCAGA+AGG - chr1_3:70506579-70506598 None:intergenic 40.0%
ATAGCATTTGATGTGCCTGA+GGG + chr1_3:70506583-70506602 Msa0137860:CDS 40.0%
!! AAGAAGCAATTGGAAGCACT+TGG + chr1_3:70506796-70506815 Msa0137860:CDS 40.0%
AAAGCAAAGAATAGAAGGGC+AGG + chr1_3:70506819-70506838 Msa0137860:CDS 40.0%
GTACACAATCATGCTAACAG+GGG - chr1_3:70507290-70507309 None:intergenic 40.0%
CGTACACAATCATGCTAACA+GGG - chr1_3:70507291-70507310 None:intergenic 40.0%
ACGTACACAATCATGCTAAC+AGG - chr1_3:70507292-70507311 None:intergenic 40.0%
GTTGAAATGAGCATACTTCG+AGG - chr1_3:70507321-70507340 None:intergenic 40.0%
GTATGCTCATTTCAACGTCT+CGG + chr1_3:70507325-70507344 Msa0137860:intron 40.0%
AGTAGATGCACAACTCTGTA+TGG - chr1_3:70507394-70507413 None:intergenic 40.0%
GTTGTGCATCTACTTCAATC+GGG + chr1_3:70507400-70507419 Msa0137860:intron 40.0%
CTGGTAAAGGATGGTGAAAT+TGG + chr1_3:70507428-70507447 Msa0137860:intron 40.0%
AATGACATGGATGTGTAGCA+TGG + chr1_3:70507985-70508004 Msa0137860:intron 40.0%
TCATGAGCATACTGCTTGTA+TGG - chr1_3:70508177-70508196 None:intergenic 40.0%
CTAACAACAGAAAATCGACG+AGG - chr1_3:70508336-70508355 None:intergenic 40.0%
!!! CGTCGATTTTCTGTTGTTAG+TGG + chr1_3:70508336-70508355 Msa0137860:intron 40.0%
TCAGAGGTTAGATCATCTTG+AGG - chr1_3:70508524-70508543 None:intergenic 40.0%
CTAGATATAGTGTACGGTAC+TGG - chr1_3:70508649-70508668 None:intergenic 40.0%
! TGGGAGCAAGTATATTTTCC+CGG - chr1_3:70509035-70509054 None:intergenic 40.0%
TCAAGCAAGCATTTCGACAA+TGG - chr1_3:70509138-70509157 None:intergenic 40.0%
AGGTCAAGAGAACCAAAAAG+CGG - chr1_3:70509439-70509458 None:intergenic 40.0%
CTCTCCGGTTTCTTTGATAA+TGG - chr1_3:70509510-70509529 None:intergenic 40.0%
AGGTCAAGAGAACCAAAAAG+CGG - chr1_3:70509439-70509458 None:intergenic 40.0%
ATCAATGCCATGAAGGACAA+TGG - chr1_3:70509679-70509698 None:intergenic 40.0%
!! AATTGATGATGACGCGATCA+TGG - chr1_3:70509725-70509744 None:intergenic 40.0%
AAAGATAATTTGGCTAGGCG+AGG + chr1_3:70510226-70510245 Msa0137860:intron 40.0%
!! CATCAAAGGTGTCAATGGAA+AGG + chr1_3:70510431-70510450 Msa0137860:intron 40.0%
TGGAAAGGCTTCAAGTAGTT+TGG + chr1_3:70510446-70510465 Msa0137860:intron 40.0%
GATAGGGGAAACTACATTTG+TGG + chr1_3:70510547-70510566 Msa0137860:intron 40.0%
GTTTCCTCCATCAATCTAGT+TGG - chr1_3:70510850-70510869 None:intergenic 40.0%
TTGATGGAGGAAACATAGGT+TGG + chr1_3:70510856-70510875 Msa0137860:intron 40.0%
! GCAATAGCTAGCACTTTTGT+TGG - chr1_3:70510995-70511014 None:intergenic 40.0%
! TGGCAATTGGTGTTCATGAT+TGG + chr1_3:70511041-70511060 Msa0137860:intron 40.0%
! GGCAATTGGTGTTCATGATT+GGG + chr1_3:70511042-70511061 Msa0137860:intron 40.0%
! GCAATTGGTGTTCATGATTG+GGG + chr1_3:70511043-70511062 Msa0137860:intron 40.0%
AAAAATGACAAACCACCGTC+CGG - chr1_3:70511101-70511120 None:intergenic 40.0%
TTTCTAATCATGTCAGCTGC+CGG + chr1_3:70511127-70511146 Msa0137860:CDS 40.0%
! TTTCGTTGATTAGTCCTGCA+AGG - chr1_3:70511267-70511286 None:intergenic 40.0%
ATTGCTAAAACTACCCAAGG+TGG - chr1_3:70511295-70511314 None:intergenic 40.0%
CCTATTGCTAAAACTACCCA+AGG - chr1_3:70511298-70511317 None:intergenic 40.0%
!!! CCTTGGGTAGTTTTAGCAAT+AGG + chr1_3:70511295-70511314 Msa0137860:CDS 40.0%
AAACTGCAAGACCACATGTT+TGG + chr1_3:70511371-70511390 Msa0137860:intron 40.0%
AGACACATTTGCCAAACATG+TGG - chr1_3:70511385-70511404 None:intergenic 40.0%
! TCTCAGTCTTTTGCAAACAC+CGG + chr1_3:70505674-70505693 Msa0137860:intron 40.0%
AAAGCGAATGAAATAGCAGC+AGG - chr1_3:70511613-70511632 None:intergenic 40.0%
TCGACAAGTCAATGAGCTTA+AGG + chr1_3:70511663-70511682 Msa0137860:intron 40.0%
GAAGAGTAGTAGTTTCACAC+AGG + chr1_3:70511753-70511772 Msa0137860:CDS 40.0%
CCTTCTGTTACTATTTGCAC+TGG - chr1_3:70506145-70506164 None:intergenic 40.0%
CCAGTGCAAATAGTAACAGA+AGG + chr1_3:70506142-70506161 Msa0137860:CDS 40.0%
TGTTGAACTGAGGTTGTTGT+TGG - chr1_3:70506188-70506207 None:intergenic 40.0%
GGAAGATATGTTCAATCCAC+CGG + chr1_3:70512008-70512027 Msa0137860:CDS 40.0%
GTATAATCATCACCTCTTGC+CGG - chr1_3:70512030-70512049 None:intergenic 40.0%
GTGGCATGTATTTGTGGTAT+TGG + chr1_3:70512093-70512112 Msa0137860:CDS 40.0%
! GCATGTATTTGTGGTATTGG+TGG + chr1_3:70512096-70512115 Msa0137860:CDS 40.0%
! AAAGAAAGCATAAGAGGACG+AGG - chr1_3:70512282-70512301 None:intergenic 40.0%
!! GGACACCTTTTGATAGCATT+TGG + chr1_3:70512324-70512343 Msa0137860:CDS 40.0%
GCACACCAAATGCTATCAAA+AGG - chr1_3:70512332-70512351 None:intergenic 40.0%
!! ATAGCATTTGGTGTGCCAAA+GGG + chr1_3:70512336-70512355 Msa0137860:CDS 40.0%
GTGCTTAATGTGAAGATCAC+TGG + chr1_3:70512504-70512523 Msa0137860:CDS 40.0%
AAAGCATAGAATAGAAGGGC+AGG + chr1_3:70512572-70512591 Msa0137860:CDS 40.0%
ATTGCAGCTGCAACTTTCTT+TGG + chr1_3:70512642-70512661 Msa0137860:intron 40.0%
TTGTCCTAGCCACCAAAATA+AGG - chr1_3:70512680-70512699 None:intergenic 40.0%
AAGATGACAAAGTTGGCATG+CGG + chr1_3:70512784-70512803 Msa0137860:intron 40.0%
TGCGGTGACAACTTAGAAAT+AGG + chr1_3:70512802-70512821 Msa0137860:intron 40.0%
GCGGTGACAACTTAGAAATA+GGG + chr1_3:70512803-70512822 Msa0137860:intron 40.0%
! AAAAAGGGCAGACACGATTT+TGG + chr1_3:70512966-70512985 Msa0137860:intron 40.0%
! AAAAGGGCAGACACGATTTT+GGG + chr1_3:70512967-70512986 Msa0137860:intron 40.0%
! GTGAGTGGTTAGTCATTCAT+AGG - chr1_3:70513145-70513164 None:intergenic 40.0%
ACACTTGAGGGGAAGATTAT+TGG - chr1_3:70513177-70513196 None:intergenic 40.0%
TGGTGGAAACTTACACTTGA+GGG - chr1_3:70513189-70513208 None:intergenic 40.0%
CTTGGATCAAGTATAAGTGG+TGG - chr1_3:70513206-70513225 None:intergenic 40.0%
GTGCTTGGATCAAGTATAAG+TGG - chr1_3:70513209-70513228 None:intergenic 40.0%
AAGATTGAGATCCTAGTGCT+TGG - chr1_3:70513224-70513243 None:intergenic 40.0%
ATTAGAACCCAAGTTCAGCT+TGG - chr1_3:70513254-70513273 None:intergenic 40.0%
! TGGGTTCTAATACCACTTGT+TGG + chr1_3:70513263-70513282 Msa0137860:intron 40.0%
! GGGTTCTAATACCACTTGTT+GGG + chr1_3:70513264-70513283 Msa0137860:intron 40.0%
! GGTTCTAATACCACTTGTTG+GGG + chr1_3:70513265-70513284 Msa0137860:intron 40.0%
! TACCACTTGTTGGGGAAATA+AGG + chr1_3:70513273-70513292 Msa0137860:intron 40.0%
! ACCACTTGTTGGGGAAATAA+GGG + chr1_3:70513274-70513293 Msa0137860:intron 40.0%
ATATTCCCGGAGCATAATAG+AGG + chr1_3:70513322-70513341 Msa0137860:intron 40.0%
TATTCCCGGAGCATAATAGA+GGG + chr1_3:70513323-70513342 Msa0137860:intron 40.0%
ATCATGTTGAGAATCCATGG+TGG - chr1_3:70513499-70513518 None:intergenic 40.0%
ATGCATTAGAGAATCCATGG+TGG - chr1_3:70513538-70513557 None:intergenic 40.0%
GGTATGCATTAGAGAATCCA+TGG - chr1_3:70513541-70513560 None:intergenic 40.0%
ATAGTAGAGAGCAAGAGAGT+CGG - chr1_3:70513920-70513939 None:intergenic 40.0%
CTCTCTTGCTCTCTACTATA+AGG + chr1_3:70513921-70513940 Msa0137860:intron 40.0%
CTTGTTGAGAAGAAGCAACA+TGG - chr1_3:70513971-70513990 None:intergenic 40.0%
!! TTTACTTTTCTCCGAGAGAG+AGG + chr1_3:70514026-70514045 Msa0137860:intron 40.0%
GCTCATATGATTGCTCATTG+TGG + chr1_3:70514060-70514079 Msa0137860:intron 40.0%
CAAAAGGTTGCAAAAAGAGC+AGG - chr1_3:70514125-70514144 None:intergenic 40.0%
TTAAATAGAGAGAGAGAGGG+AGG - chr1_3:70514471-70514490 None:intergenic 40.0%
! GGTAATTCCATTGGTGTTCA+TGG + chr1_3:70505284-70505303 Msa0137860:CDS 40.0%
! TCCATTGGTGTTCATGGTTT+AGG + chr1_3:70505290-70505309 Msa0137860:CDS 40.0%
TCCTAAACCATGAACACCAA+TGG - chr1_3:70514609-70514628 None:intergenic 40.0%
TACATGTTCGGTCTATACTC+CGG + chr1_3:70505404-70505423 Msa0137860:CDS 40.0%
! TCTCAGTCTTTTGCAAACAC+GGG + chr1_3:70505674-70505693 Msa0137860:intron 40.0%
AAGAATTTCCCTGAATCTCG+TGG + chr1_3:70515031-70515050 Msa0137860:intron 40.0%
!!! GCGGTTTTGGGAATTCTTAA+AGG + chr1_3:70505740-70505759 Msa0137860:intron 40.0%
!! AAAGGCTATGTTGGTCTTAG+TGG + chr1_3:70505758-70505777 Msa0137860:intron 40.0%
!! AGCTCATTAACTTGTCGAAC+AGG - chr1_3:70515223-70515242 None:intergenic 40.0%
TCAATGAAAACAACGGCAAG+TGG - chr1_3:70506073-70506092 None:intergenic 40.0%
! GTTACTATTTGCACTGGTGA+AGG - chr1_3:70506139-70506158 None:intergenic 40.0%
CCTTCTGTTACTATTTGCAC+TGG - chr1_3:70506145-70506164 None:intergenic 40.0%
CCAGTGCAAATAGTAACAGA+AGG + chr1_3:70506142-70506161 Msa0137860:CDS 40.0%
!! TATCTAGGACGTGTTTTCTC+AGG + chr1_3:70506466-70506485 Msa0137860:CDS 40.0%
AAAGTAAGCATAAGAGGACG+AGG - chr1_3:70506529-70506548 None:intergenic 40.0%
AACTCTCTTTGTCTCATGTG+TGG + chr1_3:70506549-70506568 Msa0137860:CDS 40.0%
ACTCTCTTTGTCTCATGTGT+GGG + chr1_3:70506550-70506569 Msa0137860:CDS 40.0%
GCACATCAAATGCTATCAGA+AGG - chr1_3:70506579-70506598 None:intergenic 40.0%
ATAGCATTTGATGTGCCAGA+GGG + chr1_3:70515883-70515902 Msa0137860:CDS 40.0%
GTGCTTAATGTGAAGATCAC+TGG + chr1_3:70512504-70512523 Msa0137860:CDS 40.0%
AGCACCAAAAAATGTTGCAG+CGG - chr1_3:70506896-70506915 None:intergenic 40.0%
GTACAGAGAAGAAGCTGAAA+TGG + chr1_3:70516278-70516297 Msa0137860:CDS 40.0%
AAAGAACGTGGAAAAGACAG+AGG + chr1_3:70516308-70516327 Msa0137860:CDS 40.0%
ACAGAGGAAGATGACAAAGT+TGG + chr1_3:70516324-70516343 Msa0137860:CDS 40.0%
TCCCAAACCATGAACACCAA+TGG - chr1_3:70505294-70505313 None:intergenic 45.0%
AAAAATGACGAACCACCGTC+CGG - chr1_3:70505348-70505367 None:intergenic 45.0%
GTATAGACCGAACATGTAGG+TGG - chr1_3:70505402-70505421 None:intergenic 45.0%
GGAGTATAGACCGAACATGT+AGG - chr1_3:70505405-70505424 None:intergenic 45.0%
TCAACGAACTCTATCCACCA+TGG + chr1_3:70505525-70505544 Msa0137860:CDS 45.0%
CAACGAACTCTATCCACCAT+GGG + chr1_3:70505526-70505545 Msa0137860:CDS 45.0%
AAGAATTTCCCGGAATCTCG+TGG + chr1_3:70505716-70505735 Msa0137860:intron 45.0%
! TGGTCTTGCTGGATTCTTGT+TGG + chr1_3:70505961-70505980 Msa0137860:intron 45.0%
! GTATGGTTTAAGTGCTGCTG+TGG + chr1_3:70506027-70506046 Msa0137860:CDS 45.0%
GACTGAAACTGAAACAGCAG+AGG - chr1_3:70506212-70506231 None:intergenic 45.0%
GTGGCATGTATTTGTGGTGT+TGG + chr1_3:70506340-70506359 Msa0137860:CDS 45.0%
! GCATGTATTTGTGGTGTTGG+TGG + chr1_3:70506343-70506362 Msa0137860:CDS 45.0%
GATAGCATTTGATGTGCCTG+AGG + chr1_3:70506582-70506601 Msa0137860:CDS 45.0%
GAAGTGTAGCAAGTCCACTT+GGG + chr1_3:70506722-70506741 Msa0137860:CDS 45.0%
GTGCTTAATGTGAAGATCGC+TGG + chr1_3:70506751-70506770 Msa0137860:intron 45.0%
GGGCAGGAATTGAATTGTGT+TGG + chr1_3:70506835-70506854 Msa0137860:CDS 45.0%
TAGGGAAGAAGCTGAAATGG+TGG + chr1_3:70506981-70507000 Msa0137860:CDS 45.0%
! AATGGTGGAGGTAAAGAACG+AGG + chr1_3:70506996-70507015 Msa0137860:intron 45.0%
! ATGGTGGAGGTAAAGAACGA+GGG + chr1_3:70506997-70507016 Msa0137860:intron 45.0%
CTACTTCAATCGGGATGATC+TGG + chr1_3:70507409-70507428 Msa0137860:intron 45.0%
CAATCGGGATGATCTGGTAA+AGG + chr1_3:70507415-70507434 Msa0137860:intron 45.0%
!! GGATGGTGAAATTGGTTCGT+TGG + chr1_3:70507436-70507455 Msa0137860:intron 45.0%
!! ACATGCACGTTGATGGTTTG+AGG + chr1_3:70507531-70507550 Msa0137860:intron 45.0%
TCAGTAAACCAAGACCTCTG+TGG + chr1_3:70507609-70507628 Msa0137860:intron 45.0%
TTTCGATTCCACAGAGGTCT+TGG - chr1_3:70507620-70507639 None:intergenic 45.0%
TTGGTACAAAAGAGGGCCAA+AGG + chr1_3:70507711-70507730 Msa0137860:intron 45.0%
TTGTGGTATAGTCGAGGTGA+TGG - chr1_3:70507887-70507906 None:intergenic 45.0%
! GGTGGCAACTCTCTTTTAAG+TGG + chr1_3:70508211-70508230 Msa0137860:intron 45.0%
TGTTACAGGGCTGGACATAA+TGG - chr1_3:70508432-70508451 None:intergenic 45.0%
ACTACATGCTCGCATATCAG+AGG - chr1_3:70508540-70508559 None:intergenic 45.0%
GTTTGCCGATGCTCTAATCA+TGG + chr1_3:70508598-70508617 Msa0137860:intron 45.0%
AACTTGTCTCCCTTATCTGC+AGG + chr1_3:70508776-70508795 Msa0137860:intron 45.0%
ACTTGTCTCCCTTATCTGCA+GGG + chr1_3:70508777-70508796 Msa0137860:intron 45.0%
AAAGCTCGTGTTGTCGCAAA+AGG - chr1_3:70509403-70509422 None:intergenic 45.0%
AAGAGAACCAAAAAGCGGTG+TGG - chr1_3:70509434-70509453 None:intergenic 45.0%
GTTTCACACCTTGTGGCAAT+AGG + chr1_3:70509469-70509488 Msa0137860:intron 45.0%
AAAGCTCGTGTTGTCGCAAA+AGG - chr1_3:70509403-70509422 None:intergenic 45.0%
AAGAGAACCAAAAAGCGGTG+TGG - chr1_3:70509434-70509453 None:intergenic 45.0%
GTTTCACACCTTGTGGCAAT+AGG + chr1_3:70509469-70509488 Msa0137860:intron 45.0%
AAGGTGGATCAATGCCATGA+AGG - chr1_3:70509686-70509705 None:intergenic 45.0%
!! GCATCGAAATCTGGCTCTAT+TGG - chr1_3:70509851-70509870 None:intergenic 45.0%
ATAGAGCCAGATTTCGATGC+CGG + chr1_3:70509851-70509870 Msa0137860:intron 45.0%
CTTGCTTGTGTACCAACAGA+TGG - chr1_3:70509929-70509948 None:intergenic 45.0%
!! ATCATGGGTAGCGGATATTG+TGG + chr1_3:70510525-70510544 Msa0137860:intron 45.0%
!! GGTAGCGGATATTGTGGATA+GGG + chr1_3:70510531-70510550 Msa0137860:intron 45.0%
!! GTAGCGGATATTGTGGATAG+GGG + chr1_3:70510532-70510551 Msa0137860:intron 45.0%
AGGGGAAACTACATTTGTGG+TGG + chr1_3:70510550-70510569 Msa0137860:intron 45.0%
GGCAGCTGACATGATTAGAA+AGG - chr1_3:70511128-70511147 None:intergenic 45.0%
GTATAGACCGAACATGTAGG+TGG - chr1_3:70505402-70505421 None:intergenic 45.0%
GGAGTATAGACCGAACATGT+AGG - chr1_3:70505405-70505424 None:intergenic 45.0%
TAAGGAGGTCTAGTGTGCTT+TGG - chr1_3:70511210-70511229 None:intergenic 45.0%
TCAACGAAATCTCTCCACCT+TGG + chr1_3:70511278-70511297 Msa0137860:CDS 45.0%
CAACGAAATCTCTCCACCTT+GGG + chr1_3:70511279-70511298 Msa0137860:CDS 45.0%
AAGAATTTCCCCGAATCTCG+CGG + chr1_3:70511469-70511488 Msa0137860:intron 45.0%
!! AGCTCATTGACTTGTCGAAC+AGG - chr1_3:70511661-70511680 None:intergenic 45.0%
TACATCTCACTTGCTCTTGC+TGG + chr1_3:70511703-70511722 Msa0137860:intron 45.0%
!! TGCTCTTGCTGGTTTCTTGT+TGG + chr1_3:70511714-70511733 Msa0137860:intron 45.0%
AGTTTCACACAGGGTGAGTT+TGG + chr1_3:70511763-70511782 Msa0137860:CDS 45.0%
! GTTTGGTTTAAGTGCTGCTG+TGG + chr1_3:70511780-70511799 Msa0137860:CDS 45.0%
GACTGAAACTGAAACAGCAG+AGG - chr1_3:70506212-70506231 None:intergenic 45.0%
ACTCTCTTTGTCTCGTGTGT+GGG + chr1_3:70512303-70512322 Msa0137860:CDS 45.0%
!! GATAGCATTTGGTGTGCCAA+AGG + chr1_3:70512335-70512354 Msa0137860:CDS 45.0%
GGGCAGGAATTGAATTGTGT+TGG + chr1_3:70506835-70506854 Msa0137860:CDS 45.0%
TAGGGAAGAAGCTGAAATGG+TGG + chr1_3:70506981-70507000 Msa0137860:CDS 45.0%
! AATGGTGGAGGTAAAGAACG+AGG + chr1_3:70506996-70507015 Msa0137860:intron 45.0%
! ATGGTGGAGGTAAAGAACGA+GGG + chr1_3:70506997-70507016 Msa0137860:intron 45.0%
GGTGGAAACTTACACTTGAG+GGG - chr1_3:70513188-70513207 None:intergenic 45.0%
! GTGGTGGAAACTTACACTTG+AGG - chr1_3:70513190-70513209 None:intergenic 45.0%
! CCACTTGTTGGGGAAATAAG+GGG + chr1_3:70513275-70513294 Msa0137860:intron 45.0%
TGTCTCCCTCTATTATGCTC+CGG - chr1_3:70513331-70513350 None:intergenic 45.0%
AAGAGAGTCGGTCTCAAAAG+TGG - chr1_3:70513908-70513927 None:intergenic 45.0%
! GTTGGTGCTTACTGCTTACT+TGG - chr1_3:70514554-70514573 None:intergenic 45.0%
!! ATGGCGGTTGGTAATTCCAT+TGG + chr1_3:70514590-70514609 Msa0137860:intron 45.0%
CTCACTGTCCAATTCATCAC+CGG + chr1_3:70514641-70514660 Msa0137860:CDS 45.0%
TTTCGCCTCCTTCCTAATCA+TGG + chr1_3:70514679-70514698 Msa0137860:CDS 45.0%
GTATAGACCGAACATGTAGG+TGG - chr1_3:70505402-70505421 None:intergenic 45.0%
GGAGTATAGACCGAACATGT+AGG - chr1_3:70505405-70505424 None:intergenic 45.0%
TCAACGAACTCTATCCACCT+TGG + chr1_3:70514840-70514859 Msa0137860:CDS 45.0%
CAACGAACTCTATCCACCTT+GGG + chr1_3:70514841-70514860 Msa0137860:CDS 45.0%
TGGTCTAGCTGGATTCTTGT+TGG + chr1_3:70515276-70515295 Msa0137860:intron 45.0%
AGTTTCACACAGGGTGAGTT+TGG + chr1_3:70511763-70511782 Msa0137860:CDS 45.0%
! GTTTGGTTTAAGTGCTGCTG+TGG + chr1_3:70511780-70511799 Msa0137860:CDS 45.0%
AACACATCTTCCCACCACTT+TGG - chr1_3:70515547-70515566 None:intergenic 45.0%
GTATAATCATCACCTCTGGC+TGG - chr1_3:70515577-70515596 None:intergenic 45.0%
GTGGCATGTATTTGTGGTGT+TGG + chr1_3:70506340-70506359 Msa0137860:CDS 45.0%
! GCATGTATTTGTGGTGTTGG+TGG + chr1_3:70506343-70506362 Msa0137860:CDS 45.0%
GATAGCATTTGATGTGCCAG+AGG + chr1_3:70515882-70515901 Msa0137860:CDS 45.0%
GAAGTGTAGCAAGTCCACTT+GGG + chr1_3:70506722-70506741 Msa0137860:CDS 45.0%
GGGCGTGAATTGAATTGTGT+TGG + chr1_3:70516135-70516154 Msa0137860:CDS 45.0%
CAGAGAAGAAGCTGAAATGG+TGG + chr1_3:70516281-70516300 Msa0137860:CDS 45.0%
AGAAGAAGCTGAAATGGTGG+AGG + chr1_3:70516284-70516303 Msa0137860:CDS 45.0%
! AATGGTGGAGGTAAAGAACG+TGG + chr1_3:70506996-70507015 Msa0137860:intron 45.0%
CTCACCGTCCAATTCATCAC+CGG + chr1_3:70505326-70505345 Msa0137860:CDS 50.0%
GGCTGCCATGATTAGAAAGG+AGG - chr1_3:70505372-70505391 None:intergenic 50.0%
TTTCTAATCATGGCAGCCGC+CGG + chr1_3:70505374-70505393 Msa0137860:CDS 50.0%
! AGCAACGTTGGTGTCCTTTC+AGG + chr1_3:70505497-70505516 Msa0137860:CDS 50.0%
CAGCAGAGGTTGTTGAACTG+AGG - chr1_3:70506198-70506217 None:intergenic 50.0%
GTGTTCAATCCACCAGCAAG+AGG + chr1_3:70506262-70506281 Msa0137860:intron 50.0%
! GGAAGTGTAGCAAGTCCACT+TGG + chr1_3:70506721-70506740 Msa0137860:CDS 50.0%
GGAAGAAGCTGAAATGGTGG+AGG + chr1_3:70506984-70507003 Msa0137860:CDS 50.0%
CGGGATGATCTGGTAAAGGA+TGG + chr1_3:70507419-70507438 Msa0137860:intron 50.0%
! TGGATTAACGGGTGCTTAGC+CGG + chr1_3:70507456-70507475 Msa0137860:intron 50.0%
!! AGGGCTGGACATAATGGATG+TGG - chr1_3:70508426-70508445 None:intergenic 50.0%
GCGAAACTTTGTTACAGGGC+TGG - chr1_3:70508441-70508460 None:intergenic 50.0%
! AGTGTACGGTACTGGGATGT+TGG - chr1_3:70508641-70508660 None:intergenic 50.0%
CTTGTCTCCCTTATCTGCAG+GGG + chr1_3:70508778-70508797 Msa0137860:intron 50.0%
TGTGGTACCCCTGCAGATAA+GGG - chr1_3:70508788-70508807 None:intergenic 50.0%
ATGTGGTACCCCTGCAGATA+AGG - chr1_3:70508789-70508808 None:intergenic 50.0%
!! TACCTCTCCACACCGCTTTT+TGG + chr1_3:70509424-70509443 Msa0137860:intron 50.0%
AACCAAAAAGCGGTGTGGAG+AGG - chr1_3:70509429-70509448 None:intergenic 50.0%
!! TACCTCTCCACACCGCTTTT+TGG + chr1_3:70509424-70509443 Msa0137860:intron 50.0%
AACCAAAAAGCGGTGTGGAG+AGG - chr1_3:70509429-70509448 None:intergenic 50.0%
TCGAACGCCATTGTCCTTCA+TGG + chr1_3:70509669-70509688 Msa0137860:intron 50.0%
TAGAGCCAGATTTCGATGCC+GGG + chr1_3:70509852-70509871 Msa0137860:intron 50.0%
! ATTTCCCCGGCATCGAAATC+TGG - chr1_3:70509860-70509879 None:intergenic 50.0%
GGACAATGGCATCATTTCCC+CGG - chr1_3:70509873-70509892 None:intergenic 50.0%
GAGCATGCTCCACAATTGTG+TGG + chr1_3:70510397-70510416 Msa0137860:intron 50.0%
!! GGGTAGCGGATATTGTGGAT+AGG + chr1_3:70510530-70510549 Msa0137860:intron 50.0%
! AGCAATGTTGGTGTCCTTGC+AGG + chr1_3:70511250-70511269 Msa0137860:CDS 50.0%
AAAACAGCTCCGCGAGATTC+GGG - chr1_3:70511481-70511500 None:intergenic 50.0%
CAAAACAGCTCCGCGAGATT+CGG - chr1_3:70511482-70511501 None:intergenic 50.0%
!! GAATCTCGCGGAGCTGTTTT+GGG + chr1_3:70511481-70511500 Msa0137860:intron 50.0%
CAGCAGAGGTTGTTGAACTG+AGG - chr1_3:70506198-70506217 None:intergenic 50.0%
ATGTTCAATCCACCGGCAAG+AGG + chr1_3:70512015-70512034 Msa0137860:CDS 50.0%
TAATCATCACCTCTTGCCGG+TGG - chr1_3:70512027-70512046 None:intergenic 50.0%
GACTCTCTTTGTCTCGTGTG+TGG + chr1_3:70512302-70512321 Msa0137860:CDS 50.0%
GAAGCTGCATAGAGACCCTT+TGG - chr1_3:70512354-70512373 None:intergenic 50.0%
GGAAGAAGCTGAAATGGTGG+AGG + chr1_3:70506984-70507003 Msa0137860:CDS 50.0%
GAACCCAAGTTCAGCTTGGT+GGG - chr1_3:70513250-70513269 None:intergenic 50.0%
AGAACCCAAGTTCAGCTTGG+TGG - chr1_3:70513251-70513270 None:intergenic 50.0%
! CCCCTTATTTCCCCAACAAG+TGG - chr1_3:70513278-70513297 None:intergenic 50.0%
GTCTCCCTCTATTATGCTCC+GGG - chr1_3:70513330-70513349 None:intergenic 50.0%
!! CCAACGATTAGCCTCTCTCT+CGG - chr1_3:70514040-70514059 None:intergenic 50.0%
CGAGAGAGAGGCTAATCGTT+GGG + chr1_3:70514038-70514057 Msa0137860:intron 50.0%
CTGTCCAATTCATCACCGGA+CGG + chr1_3:70514645-70514664 Msa0137860:CDS 50.0%
GAAAATGACGAACCACCGTC+CGG - chr1_3:70514663-70514682 None:intergenic 50.0%
! GTTCGTTGACTAGTCCTGCA+AGG - chr1_3:70514829-70514848 None:intergenic 50.0%
TAATCATCACCTCTGGCTGG+TGG - chr1_3:70515574-70515593 None:intergenic 50.0%
! GGAAGTGTAGCAAGTCCACT+TGG + chr1_3:70506721-70506740 Msa0137860:CDS 50.0%
AGTTGGTCAACAGCAGCATG+TGG + chr1_3:70507041-70507060 Msa0137860:intron 50.0%
GCGGCCGTAGGTAATTCCAT+TGG + chr1_3:70505275-70505294 Msa0137860:CDS 55.0%
CCGTCCGGTGATGAATTGGA+CGG - chr1_3:70505333-70505352 None:intergenic 55.0%
CCGTCCAATTCATCACCGGA+CGG + chr1_3:70505330-70505349 Msa0137860:CDS 55.0%
TCCAATTCATCACCGGACGG+TGG + chr1_3:70505333-70505352 Msa0137860:CDS 55.0%
ACCACCGTCCGGTGATGAAT+TGG - chr1_3:70505337-70505356 None:intergenic 55.0%
GGCGGCTGCCATGATTAGAA+AGG - chr1_3:70505375-70505394 None:intergenic 55.0%
ACCGAACATGTAGGTGGCTC+CGG - chr1_3:70505396-70505415 None:intergenic 55.0%
AAAACCGCGCCACGAGATTC+CGG - chr1_3:70505728-70505747 None:intergenic 55.0%
! GAATCTCGTGGCGCGGTTTT+GGG + chr1_3:70505728-70505747 Msa0137860:intron 55.0%
GAAGCTACGTAGAGACCCTC+AGG - chr1_3:70506601-70506620 None:intergenic 55.0%
! ACGGTACTGGGATGTTGGAC+AGG - chr1_3:70508636-70508655 None:intergenic 55.0%
AGAGCCAGATTTCGATGCCG+GGG + chr1_3:70509853-70509872 Msa0137860:intron 55.0%
ACCGAACATGTAGGTGGCTC+CGG - chr1_3:70505396-70505415 None:intergenic 55.0%
AAACAGCTCCGCGAGATTCG+GGG - chr1_3:70511480-70511499 None:intergenic 55.0%
! CGAATCTCGCGGAGCTGTTT+TGG + chr1_3:70511480-70511499 Msa0137860:intron 55.0%
TGCTCCCACCAAGCTGAACT+TGG + chr1_3:70513243-70513262 Msa0137860:intron 55.0%
GCTCCCACCAAGCTGAACTT+GGG + chr1_3:70513244-70513263 Msa0137860:intron 55.0%
CCGAGAGAGAGGCTAATCGT+TGG + chr1_3:70514037-70514056 Msa0137860:intron 55.0%
TCCAATTCATCACCGGACGG+TGG + chr1_3:70505333-70505352 Msa0137860:CDS 55.0%
ACCACCGTCCGGTGATGAAT+TGG - chr1_3:70505337-70505356 None:intergenic 55.0%
GGCTGCCATGATTAGGAAGG+AGG - chr1_3:70514687-70514706 None:intergenic 55.0%
TTCCTAATCATGGCAGCCGC+CGG + chr1_3:70514689-70514708 Msa0137860:CDS 55.0%
ACCGAACATGTAGGTGGCTC+CGG - chr1_3:70505396-70505415 None:intergenic 55.0%
! AGCAACGTTGGTGTCCTTGC+AGG + chr1_3:70514812-70514831 Msa0137860:CDS 55.0%
TTTCCCTGAATCTCGTGGCG+CGG + chr1_3:70515036-70515055 Msa0137860:intron 55.0%
AAACCGCGCCACGAGATTCA+GGG - chr1_3:70515042-70515061 None:intergenic 55.0%
AAAACCGCGCCACGAGATTC+AGG - chr1_3:70505728-70505747 None:intergenic 55.0%
! TGAATCTCGTGGCGCGGTTT+TGG + chr1_3:70515042-70515061 Msa0137860:intron 55.0%
! GAATCTCGTGGCGCGGTTTT+GGG + chr1_3:70505728-70505747 Msa0137860:intron 55.0%
GTGTTCAATCCACCAGCCAG+AGG + chr1_3:70515562-70515581 Msa0137860:CDS 55.0%
GAAGCTACGTAGAGACCCTC+TGG - chr1_3:70506601-70506620 None:intergenic 55.0%
GAACATGTAGGTGGCTCCGG+CGG - chr1_3:70505393-70505412 None:intergenic 60.0%
GCCGGAGCCACCTACATGTT+CGG + chr1_3:70505392-70505411 Msa0137860:CDS 60.0%
TTTCCCGGAATCTCGTGGCG+CGG + chr1_3:70505721-70505740 Msa0137860:intron 60.0%
AAACCGCGCCACGAGATTCC+GGG - chr1_3:70505727-70505746 None:intergenic 60.0%
! GGAATCTCGTGGCGCGGTTT+TGG + chr1_3:70505727-70505746 Msa0137860:intron 60.0%
CTCACCGTCCAAGCCATCAC+CGG + chr1_3:70511079-70511098 Msa0137860:CDS 60.0%
GACAAACCACCGTCCGGTGA+TGG - chr1_3:70511095-70511114 None:intergenic 60.0%
GCCGGAGCCACCTACATGTT+CGG + chr1_3:70505392-70505411 Msa0137860:CDS 60.0%
GGCGGCTGCCATGATTAGGA+AGG - chr1_3:70514690-70514709 None:intergenic 60.0%
GAACATGTAGGTGGCTCCGG+CGG - chr1_3:70505393-70505412 None:intergenic 60.0%
GCCGGAGCCACCTACATGTT+CGG + chr1_3:70505392-70505411 Msa0137860:CDS 60.0%
! CCGTCCGGTGATGGCTTGGA+CGG - chr1_3:70511086-70511105 None:intergenic 65.0%
CCGTCCAAGCCATCACCGGA+CGG + chr1_3:70511083-70511102 Msa0137860:CDS 65.0%
TCCAAGCCATCACCGGACGG+TGG + chr1_3:70511086-70511105 Msa0137860:CDS 65.0%
! ACCACCGTCCGGTGATGGCT+TGG - chr1_3:70511090-70511109 None:intergenic 65.0%
CTCCGGCGGCTGCCATGATT+AGG - chr1_3:70505379-70505398 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 70505272 70516374 70505272 ID=Msa0137860;Name=Msa0137860
chr1_3 mRNA 70505272 70516374 70505272 ID=Msa0137860-mRNA-1;Parent=Msa0137860;Name=Msa0137860-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|0.14|0.13|15|0|1225
chr1_3 exon 70505272 70505476 70505272 ID=Msa0137860-mRNA-1:exon:24482;Parent=Msa0137860-mRNA-1
chr1_3 exon 70505489 70505607 70505489 ID=Msa0137860-mRNA-1:exon:24483;Parent=Msa0137860-mRNA-1
chr1_3 exon 70506001 70506006 70506001 ID=Msa0137860-mRNA-1:exon:24484;Parent=Msa0137860-mRNA-1
chr1_3 exon 70506022 70506263 70506022 ID=Msa0137860-mRNA-1:exon:24485;Parent=Msa0137860-mRNA-1
chr1_3 exon 70506318 70506515 70506318 ID=Msa0137860-mRNA-1:exon:24486;Parent=Msa0137860-mRNA-1
chr1_3 exon 70506522 70506759 70506522 ID=Msa0137860-mRNA-1:exon:24487;Parent=Msa0137860-mRNA-1
chr1_3 exon 70506766 70507005 70506766 ID=Msa0137860-mRNA-1:exon:24488;Parent=Msa0137860-mRNA-1
chr1_3 exon 70511076 70511316 70511076 ID=Msa0137860-mRNA-1:exon:24489;Parent=Msa0137860-mRNA-1
chr1_3 exon 70511752 70511916 70511752 ID=Msa0137860-mRNA-1:exon:24490;Parent=Msa0137860-mRNA-1
chr1_3 exon 70511983 70512207 70511983 ID=Msa0137860-mRNA-1:exon:24491;Parent=Msa0137860-mRNA-1
chr1_3 exon 70512226 70512463 70512226 ID=Msa0137860-mRNA-1:exon:24492;Parent=Msa0137860-mRNA-1
chr1_3 exon 70512479 70512609 70512479 ID=Msa0137860-mRNA-1:exon:24493;Parent=Msa0137860-mRNA-1
chr1_3 exon 70512649 70512794 70512649 ID=Msa0137860-mRNA-1:exon:24494;Parent=Msa0137860-mRNA-1
chr1_3 exon 70514638 70514862 70514638 ID=Msa0137860-mRNA-1:exon:24495;Parent=Msa0137860-mRNA-1
chr1_3 exon 70515316 70516374 70515316 ID=Msa0137860-mRNA-1:exon:24496;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70505272 70505476 70505272 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70505489 70505607 70505489 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70506001 70506006 70506001 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70506022 70506263 70506022 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70506318 70506515 70506318 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70506522 70506759 70506522 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70506766 70507005 70506766 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70511076 70511316 70511076 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70511752 70511916 70511752 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70511983 70512207 70511983 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70512226 70512463 70512226 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70512479 70512609 70512479 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70512649 70512794 70512649 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70514638 70514862 70514638 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
chr1_3 CDS 70515316 70516374 70515316 ID=Msa0137860-mRNA-1:cds;Parent=Msa0137860-mRNA-1
Gene Sequence

>Msa0137860

ATGGCGGCCGTAGGTAATTCCATTGGTGTTCATGGTTTGGGAGACATGAAGAGTCTCACCGTCCAATTCATCACCGGACGGTGGTTCGTCATTTTTGCCTCCTTTCTAATCATGGCAGCCGCCGGAGCCACCTACATGTTCGGTCTATACTCCCCAGACATAAAAACAACACTTGGCTATGACCAAAGCACACTAAACCTCCTTAACTTTGGTAGCAACGTTGGTGTCCTTTCAGGACTAATCAACGAACTCTATCCACCATGGGTAGTTTTGACAATAGGTGCTATTCTCAATTTCTTTGGTTACTTCATGATTTGGTTATCAAAGAAGAGTGAGTATGGTTTAAGTGCTGCTGTGGTTATTTTCTTGCTTTTTCTTCCACTTGCCGTTGTTTTCATTGAAGAGAACAAGATTTGGCAGAGTAAAAAACTTGCTTTGGTTGATCCTTCACCAGTGCAAATAGTAACAGAAGGTAAAACTGAAACTGAAAAAGCCAACAACAACCTCAGTTCAACAACCTCTGCTGTTTCAGTTTCAGTCCCAAAAAAAGATCCAAAATGGTGGGAAGATGTCATAGATATGTTGATACTATTTGTGGCATGTATTTGTGGTGTTGGTGGAACTTTAACGGCAATTGATAATCTTGGTCAGATAGGAACATCACTTAGATATCCAAAGAAAAGCATAAGCACTTTTGTGTCTTTAGTAAGCATTTGGAATTATCTAGGACGTGTTTTCTCAGGATTTGTTTCTGAGCATTTTCTAACGAAATTTCCTCGTCCTCTTATGCTTACTTTAACTCTCTTTGTCTCATGTGTGGGACACCTTCTGATAGCATTTGATGTGCCTGAGGGTCTCTACGTAGCTTCAGTAATAATTGGATTTTGTTTTGGTGCTCAATGGCCATTACTTTTTGCCATTATATCAGAACTTTTTGGGCTAAAATATTATGCAACTTTATATAATTTTGGAAGTGTAGCAAGTCCACTTGGGTTATATGTGCTTAATATCGCTGGTCATTTGTATGACAAAGAAGCAAAGAAGCAATTGGAAGCACTTGGAAAGCAAAGAATAGAAGGGCAGGAATTGAATTGTGTTGGTGTTGATTGTTACAAGTTATCTTTCATTATTATTACAGCTGCAACATTTTTTGGTGCTGTTGTTTCACTTATTTTGGTGGCTAGGACCAGAAAGTTTTACAAAGGTGACATATACAAGAGATATAGGGAAGAAGCTGAAATGGTGGAGAGTCTCACCGTCCAAGCCATCACCGGACGGTGGTTTGTCATTTTTGCTTCCTTTCTAATCATGTCAGCTGCCGGAGCCACCTACATGTTCGGTCTATACTCCAGCGACATAAAAGAAACACTTGGCTATGACCAAAGCACACTAGACCTCCTTAGTTTTTTCAAAGATTTTGGTAGCAATGTTGGTGTCCTTGCAGGACTAATCAACGAAATCTCTCCACCTTGGGTAGTTTTAGCAATAGAGAAGAGTAGTAGTTTCACACAGGGTGAGTTTGGTTTAAGTGCTGCTGTGGTGATTTTCTTGCTTTTTCTCCCACTTGCTGTTGTTTTTATTGAAGAGAACAAGATTTGGAAGAGTAAAAAGCTTGCTTTGGTTGACTCTTCACCAGTGCAAATAGTAACAGAAGTCCCAAAAAAAGATCCAAAATGGTGGGAAGATATGTTCAATCCACCGGCAAGAGGTGATGATTATACAATACTTCAAGCACTTTTCAGCATAGACATGTTGATACTATTTGTGGCATGTATTTGTGGTATTGGTGGATCATTGACAGCAGTTGATAATCTTGGTCAGATAGGAACATCACTTAGATATCCAAAGAAAAGCATAAGCACTTTTGTGTCTTTAGTAAGACGTGTTTTCTCCGGATTTGTTTCAGAACATTTTCTAACAAAGTACAGATTTCCTCGTCCTCTTATGCTTTCTTTGACTCTCTTTGTCTCGTGTGTGGGACACCTTTTGATAGCATTTGGTGTGCCAAAGGGTCTCTATGCAGCTTCAGTGATTATCGGATTTTGTTTTGGTGCTCAATGGCCATTACTTTTTGCCATTATATCAGAACTTTTTGGACTTAAATATTATGCAACTTTTATAACAAGTCCAATTGGCTTATATGTGCTTAATGTGAAGATCACTGGTCATTTGTATGACAAAGAAGCTAAGAAACAATTGGAAGCACTTGGAAAGCATAGAATAGAAGGGCAGGAATTGAATTGTGTTGCTGCAACTTTCTTTGGTGCTGTTGTTAACCTTATTTTGGTGGCTAGGACAAGAAAGTTTTACAAAGGTGACATATACAAGAGATATAGGGAAGAAGCTGAAATGGTGGAGGTAAAGAACGAGGGAAAAACAGAAGAAGATGACAAAAGTCTCACTGTCCAATTCATCACCGGACGGTGGTTCGTCATTTTCGCCTCCTTCCTAATCATGGCAGCCGCCGGAGCCACCTACATGTTCGGTCTATACTCCGGTGACATAAAAACAACACTTGGTTATGACCAAAGTACACTAAACCTCCTTAGTTTTTTCAAAGATTTTGGTAGCAACGTTGGTGTCCTTGCAGGACTAGTCAACGAACTCTATCCACCTTGGAAGAATAGTAGTTTCACACAGGGTGAGTTTGGTTTAAGTGCTGCTGTGGTTATTTTCTTGCTTTTTCTTCCACTTGCCGTTGTTTTCATTGAAGAGAACAAGATTTGGCAGAGTAAAAAACTAGCTTTGGTTGATCCTTCACCAGTGCAAATAGTAACAGAAGGTGAAACTGTAACTGAAACAGAAAAAGTCAACTCTGCTGTTTCAGTTTCAGCTCCAAAAAAAGATCCAAAGTGGTGGGAAGATGTGTTCAATCCACCAGCCAGAGGTGATGATTATACAATACTTCAAGCACTTTTCAGCATAGATATGTTGATACTATTTGTGGCATGTATTTGTGGTGTTGGTGGAACTTTGACAGCAATTGATAATCTTGGTCAGATAGGAACATCACTTAGATATCCAAAGAAAAGCATAAGCACTTTTGTGTCTTTAGTAAGCATTTGGAATTATCTAGGACGTGTTTTCTCAGGATTTGTTTCTGAACATTTTCTAACGAAGTACAGATTTCCTCGTCCTCTTATGCTTACTTTAACTCTCTTTGTCTCATGTGTGGGACACCTTCTGATAGCATTTGATGTGCCAGAGGGTCTCTACGTAGCTTCAGTAATAATTGGATTTTGTTTTGGTGCTCAATGGCCATTACTTTTTGCCATTATATCAGAACTTTTTGGGCTAAAATATTATGCAACTTTGTATAATTTTGGAAGTGTAGCAAGTCCACTTGGGTTATATGTGCTTAATGTGAAGATCACTGGTCATTTGTATGACAAAGAAGCTAAGAAACAATTGGAAGCACTTGGAAAGCATAGAATAGAAGGGCGTGAATTGAATTGTGTTGGTGTTGATTGTTTCAAGTTATCCTTCATTATTATTACCGCTGCAACATTTTTTGGTGCTGTTGTTTCACTTATTTTGGTGGCTAGGACAAGAAAGTTTTACAAAGGTGACATATACAAGAGGTACAGAGAAGAAGCTGAAATGGTGGAGGTAAAGAACGTGGAAAAGACAGAGGAAGATGACAAAGTTGGTCAACAGCAGCATGTGGTGACAACTTAG
Protein sequence

>Msa0137860

MAAVGNSIGVHGLGDMKSLTVQFITGRWFVIFASFLIMAAAGATYMFGLYSPDIKTTLGYDQSTLNLLNFGSNVGVLSGLINELYPPWVVLTIGAILNFFGYFMIWLSKKSEYGLSAAVVIFLLFLPLAVVFIEENKIWQSKKLALVDPSPVQIVTEGKTETEKANNNLSSTTSAVSVSVPKKDPKWWEDVIDMLILFVACICGVGGTLTAIDNLGQIGTSLRYPKKSISTFVSLVSIWNYLGRVFSGFVSEHFLTKFPRPLMLTLTLFVSCVGHLLIAFDVPEGLYVASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNFGSVASPLGLYVLNIAGHLYDKEAKKQLEALGKQRIEGQELNCVGVDCYKLSFIIITAATFFGAVVSLILVARTRKFYKGDIYKRYREEAEMVESLTVQAITGRWFVIFASFLIMSAAGATYMFGLYSSDIKETLGYDQSTLDLLSFFKDFGSNVGVLAGLINEISPPWVVLAIEKSSSFTQGEFGLSAAVVIFLLFLPLAVVFIEENKIWKSKKLALVDSSPVQIVTEVPKKDPKWWEDMFNPPARGDDYTILQALFSIDMLILFVACICGIGGSLTAVDNLGQIGTSLRYPKKSISTFVSLVRRVFSGFVSEHFLTKYRFPRPLMLSLTLFVSCVGHLLIAFGVPKGLYAASVIIGFCFGAQWPLLFAIISELFGLKYYATFITSPIGLYVLNVKITGHLYDKEAKKQLEALGKHRIEGQELNCVAATFFGAVVNLILVARTRKFYKGDIYKRYREEAEMVEVKNEGKTEEDDKSLTVQFITGRWFVIFASFLIMAAAGATYMFGLYSGDIKTTLGYDQSTLNLLSFFKDFGSNVGVLAGLVNELYPPWKNSSFTQGEFGLSAAVVIFLLFLPLAVVFIEENKIWQSKKLALVDPSPVQIVTEGETVTETEKVNSAVSVSAPKKDPKWWEDVFNPPARGDDYTILQALFSIDMLILFVACICGVGGTLTAIDNLGQIGTSLRYPKKSISTFVSLVSIWNYLGRVFSGFVSEHFLTKYRFPRPLMLTLTLFVSCVGHLLIAFDVPEGLYVASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNFGSVASPLGLYVLNVKITGHLYDKEAKKQLEALGKHRIEGRELNCVGVDCFKLSFIIITAATFFGAVVSLILVARTRKFYKGDIYKRYREEAEMVEVKNVEKTEEDDKVGQQQHVVTT*