AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076010 MtrunA17_Chr1g0170651 89.785 558 33 1 1 558 14 547 0.0 994
Msa0076010 MtrunA17_Chr5g0399801 39.609 563 258 11 28 557 576 1089 3.03e-113 362
Msa0076010 MtrunA17_Chr4g0003501 38.779 557 261 11 32 557 448 955 1.24e-108 347
Msa0076010 MtrunA17_Chr4g0003511 38.819 559 260 11 32 557 543 1052 1.75e-107 345
Msa0076010 MtrunA17_Chr8g0354821 31.327 565 298 10 34 554 167 685 1.15e-72 245
Msa0076010 MtrunA17_Chr3g0080761 33.398 518 254 15 85 556 191 663 3.06e-72 243
Msa0076010 MtrunA17_Chr7g0255181 32.117 548 297 16 34 554 203 702 4.52e-72 244
Msa0076010 MtrunA17_Chr6g0476121 31.760 551 286 15 56 557 134 643 1.50e-70 238
Msa0076010 MtrunA17_Chr6g0476111 31.579 551 287 15 56 557 185 694 7.25e-70 238
Msa0076010 MtrunA17_Chr7g0252211 31.444 547 276 15 65 557 256 757 1.08e-68 236
Msa0076010 MtrunA17_Chr7g0232811 30.169 590 250 15 18 557 62 539 4.31e-65 221
Msa0076010 MtrunA17_Chr7g0232981 30.756 582 247 17 9 557 58 516 8.16e-64 217
Msa0076010 MtrunA17_Chr1g0163051 32.075 530 276 15 44 531 157 644 1.52e-63 220
Msa0076010 MtrunA17_Chr8g0368911 31.000 500 270 14 67 531 289 748 2.50e-63 221
Msa0076010 MtrunA17_Chr8g0368901 32.049 493 262 12 73 531 302 755 8.77e-62 217
Msa0076010 MtrunA17_Chr8g0369301 31.809 503 268 14 64 531 273 735 2.14e-61 216
Msa0076010 MtrunA17_Chr6g0467381 31.762 488 234 15 88 531 130 562 1.15e-56 199
Msa0076010 MtrunA17_Chr6g0467421 31.557 488 235 15 88 531 130 562 1.71e-56 199
Msa0076010 MtrunA17_Chr6g0467531 32.091 483 239 15 88 531 130 562 2.20e-56 198
Msa0076010 MtrunA17_Chr6g0467401 31.677 483 241 15 88 531 130 562 6.35e-55 194
Msa0076010 MtrunA17_Chr1g0163041 31.485 505 262 18 66 531 104 563 2.37e-53 190
Msa0076010 MtrunA17_Chr7g0232841 29.076 595 236 21 18 557 65 528 3.82e-52 186
Msa0076010 MtrunA17_Chr6g0467411 29.193 483 232 16 88 531 69 480 1.55e-46 170
Msa0076010 MtrunA17_Chr3g0094881 28.243 478 262 13 88 531 191 621 1.19e-44 167
Msa0076010 MtrunA17_Chr2g0306961 28.931 477 212 16 88 531 79 461 1.07e-40 153
Msa0076010 MtrunA17_Chr5g0403241 31.778 343 178 10 268 557 1168 1507 1.91e-34 139
Msa0076010 MtrunA17_Chr8g0373821 32.313 294 154 9 299 552 245 533 8.59e-33 132
Msa0076010 MtrunA17_Chr4g0075321 37.811 201 104 6 373 557 869 1064 2.39e-30 126
Msa0076010 MtrunA17_Chr1g0183321 29.299 314 157 10 304 552 428 741 3.48e-26 113
Msa0076010 MtrunA17_Chr1g0190311 29.693 293 140 10 304 531 325 616 6.33e-25 109
Msa0076010 MtrunA17_Chr7g0232751 43.478 92 47 1 471 557 28 119 4.02e-20 86.3
Msa0076010 MtrunA17_Chr7g0262001 25.750 400 191 15 244 552 313 697 4.48e-20 94.4
Msa0076010 MtrunA17_Chr1g0201311 36.000 175 84 7 392 553 61 220 4.67e-19 90.1
Msa0076010 MtrunA17_Chr1g0201621 35.429 175 85 7 392 553 61 220 2.43e-18 88.2
Msa0076010 MtrunA17_Chr6g0460921 29.075 227 123 8 347 556 214 419 2.00e-17 84.7
Msa0076010 MtrunA17_Chr7g0232861 33.690 187 100 7 18 200 61 227 2.45e-16 79.0
Msa0076010 MtrunA17_Chr3g0125251 33.333 168 96 4 396 556 1306 1464 5.18e-16 82.0
Msa0076010 MtrunA17_Chr2g0305371 30.342 234 124 10 328 554 268 469 1.62e-15 79.3
Msa0076010 MtrunA17_Chr7g0232761 32.821 195 106 8 33 225 94 265 1.33e-14 74.3
Msa0076010 MtrunA17_Chr7g0232871 46.667 75 37 2 396 469 4 76 2.97e-14 69.3
Msa0076010 MtrunA17_Chr1g0149611 35.862 145 79 5 416 552 365 503 3.62e-14 75.1
Msa0076010 MtrunA17_Chr6g0477001 29.480 173 100 5 389 552 87 246 5.65e-14 73.6
Msa0076010 MtrunA17_Chr1g0149581 33.793 145 82 5 416 552 1523 1661 4.49e-12 69.3
Msa0076010 MtrunA17_Chr2g0297191 30.405 148 87 4 415 556 1033 1170 6.24e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076010 AT2G35160.5 40.449 534 262 15 34 557 271 758 6.62e-113 353
Msa0076010 AT2G35160.2 40.449 534 262 15 34 557 307 794 2.98e-112 352
Msa0076010 AT2G35160.3 40.449 534 262 15 34 557 307 794 2.98e-112 352
Msa0076010 AT2G35160.1 40.449 534 262 15 34 557 307 794 2.98e-112 352
Msa0076010 AT2G35160.4 40.449 534 262 15 34 557 307 794 2.98e-112 352
Msa0076010 AT2G22740.2 35.025 611 292 15 3 557 229 790 1.11e-94 306
Msa0076010 AT2G22740.1 35.025 611 292 15 3 557 229 790 1.11e-94 306
Msa0076010 AT1G73100.1 32.685 514 257 14 85 556 202 668 3.78e-70 238
Msa0076010 AT5G04940.2 33.008 512 256 14 85 556 205 669 3.18e-68 233
Msa0076010 AT5G04940.1 33.008 512 256 14 85 556 205 669 3.18e-68 233
Msa0076010 AT2G33290.1 31.569 548 295 15 34 547 149 650 5.84e-64 221
Msa0076010 AT2G33290.3 31.569 548 295 15 34 547 149 650 5.84e-64 221
Msa0076010 AT2G33290.4 31.569 548 295 15 34 547 149 650 5.84e-64 221
Msa0076010 AT2G33290.2 31.569 548 295 15 34 547 149 650 5.84e-64 221
Msa0076010 AT5G13960.2 31.214 519 268 16 88 557 12 490 4.05e-61 210
Msa0076010 AT5G13960.1 30.823 571 296 19 36 557 104 624 1.85e-60 211
Msa0076010 AT4G13460.1 30.241 539 288 15 34 531 145 636 8.07e-59 207
Msa0076010 AT4G13460.2 30.241 539 288 15 34 531 145 636 8.07e-59 207
Msa0076010 AT1G17770.1 30.174 517 271 17 85 556 221 692 1.30e-55 199
Msa0076010 AT2G24740.1 30.059 509 261 16 85 556 304 754 3.39e-51 187
Msa0076010 AT2G23740.3 33.439 314 163 10 280 554 1073 1379 4.93e-35 141
Msa0076010 AT2G23740.6 33.439 314 163 10 280 554 1073 1379 4.93e-35 141
Msa0076010 AT2G23740.2 33.439 314 163 10 280 554 1073 1379 4.93e-35 141
Msa0076010 AT2G23740.1 33.439 314 163 10 280 554 1066 1372 5.10e-35 141
Msa0076010 AT5G47150.1 38.889 216 121 4 34 247 118 324 5.38e-30 120
Msa0076010 AT5G47160.1 35.417 240 135 4 10 243 182 407 6.22e-27 113
Msa0076010 AT5G47160.3 35.417 240 135 4 10 243 182 407 6.22e-27 113
Msa0076010 AT5G47160.2 35.417 240 135 4 10 243 182 407 6.22e-27 113
Msa0076010 AT3G04380.3 26.744 430 213 19 201 552 36 441 9.47e-24 105
Msa0076010 AT3G04380.1 26.744 430 213 19 201 552 52 457 1.29e-23 104
Msa0076010 AT3G04380.4 26.744 430 213 19 201 552 52 457 1.53e-23 104
Msa0076010 AT3G04380.2 28.529 333 169 13 287 552 100 430 6.41e-23 102
Msa0076010 AT3G04380.5 28.529 333 169 13 287 552 84 414 6.42e-23 102
Msa0076010 AT3G04380.6 28.529 333 169 13 287 552 100 430 6.99e-23 102
Msa0076010 AT2G23740.4 32.530 249 123 9 280 490 1073 1314 9.75e-23 103
Msa0076010 AT2G23740.5 32.530 249 123 9 280 490 1073 1314 9.75e-23 103
Msa0076010 AT3G03750.2 33.696 184 100 4 392 556 169 349 7.55e-21 94.7
Msa0076010 AT5G43990.3 34.973 183 104 7 384 552 520 701 1.42e-20 96.3
Msa0076010 AT5G43990.11 34.973 183 104 7 384 552 520 701 1.42e-20 96.3
Msa0076010 AT5G43990.1 34.973 183 104 7 384 552 520 701 1.42e-20 96.3
Msa0076010 AT5G43990.4 34.973 183 104 7 384 552 520 701 1.42e-20 96.3
Msa0076010 AT5G43990.15 34.973 183 104 7 384 552 523 704 1.44e-20 96.3
Msa0076010 AT5G43990.10 34.973 183 104 7 384 552 523 704 1.44e-20 96.3
Msa0076010 AT5G43990.16 34.973 183 104 7 384 552 500 681 1.44e-20 96.3
Msa0076010 AT5G43990.5 34.973 183 104 7 384 552 500 681 1.44e-20 96.3
Msa0076010 AT5G43990.17 34.973 183 104 7 384 552 500 681 1.44e-20 96.3
Msa0076010 AT5G43990.14 34.973 183 104 7 384 552 500 681 1.44e-20 96.3
Msa0076010 AT5G43990.8 34.973 183 104 7 384 552 451 632 1.62e-20 95.9
Msa0076010 AT5G43990.12 34.973 183 104 7 384 552 451 632 1.62e-20 95.9
Msa0076010 AT5G43990.6 34.973 183 104 7 384 552 451 632 1.62e-20 95.9
Msa0076010 AT5G43990.13 34.973 183 104 7 384 552 451 632 1.62e-20 95.9
Msa0076010 AT5G43990.9 34.973 183 104 7 384 552 543 724 1.71e-20 96.3
Msa0076010 AT5G43990.2 34.973 183 104 7 384 552 543 724 1.71e-20 96.3
Msa0076010 AT5G43990.7 34.973 183 104 7 384 552 431 612 2.03e-20 95.5
Msa0076010 AT1G04050.2 32.447 188 109 6 384 555 536 721 1.01e-18 90.5
Msa0076010 AT1G04050.1 32.447 188 109 6 384 555 536 721 1.01e-18 90.5
Msa0076010 AT1G04050.3 32.447 188 109 6 384 555 432 617 1.32e-18 90.1
Msa0076010 AT1G77300.1 30.952 168 100 4 396 556 1008 1166 1.68e-15 80.9
Msa0076010 AT1G77300.2 30.952 168 100 4 396 556 1008 1166 1.83e-15 80.5
Msa0076010 AT3G03750.1 33.728 169 104 4 392 556 169 333 2.48e-15 77.8
Msa0076010 AT4G30860.1 28.631 241 130 8 321 556 261 464 1.41e-13 73.6
Msa0076010 AT1G76710.2 31.395 172 98 7 392 554 66 226 2.53e-13 72.8
Msa0076010 AT1G76710.1 31.395 172 98 7 392 554 66 226 2.53e-13 72.8
Msa0076010 AT1G76710.3 31.395 172 98 7 392 554 66 226 2.59e-13 72.8
Msa0076010 AT1G76710.4 31.395 172 98 7 392 554 66 226 2.73e-13 72.8
Msa0076010 AT3G59960.3 30.539 167 94 4 399 556 96 249 5.62e-11 64.3
Msa0076010 AT3G59960.2 30.539 167 94 4 399 556 96 249 5.62e-11 64.3
Msa0076010 AT3G59960.4 30.539 167 94 4 399 556 96 249 5.62e-11 64.3
Msa0076010 AT5G42400.7 30.201 149 86 5 415 556 1250 1387 6.81e-11 65.9
Msa0076010 AT5G42400.2 30.201 149 86 5 415 556 1250 1387 6.81e-11 65.9
Msa0076010 AT5G42400.8 30.201 149 86 5 415 556 1250 1387 6.81e-11 65.9
Msa0076010 AT5G42400.5 30.201 149 86 5 415 556 1250 1387 6.81e-11 65.9
Msa0076010 AT5G42400.4 30.201 149 86 5 415 556 1250 1387 6.81e-11 65.9
Msa0076010 AT5G42400.1 30.201 149 86 5 415 556 1250 1387 6.81e-11 65.9
Msa0076010 AT5G42400.3 30.201 149 86 5 415 556 1250 1387 6.81e-11 65.9
Msa0076010 AT5G42400.6 30.201 149 86 5 415 556 1250 1387 6.81e-11 65.9

Find 129 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATGTGGTATCGATTATT+TGG 0.102559 1_2:-51774298 Msa0076010:CDS
ACGACACCGTCCCTTATATT+AGG 0.200133 1_2:+51774171 None:intergenic
TACATGCCCTATTCTCTTTC+CGG 0.210201 1_2:+51774392 None:intergenic
ATGCAAAGTTCAAAATCTTT+TGG 0.219974 1_2:-51774648 Msa0076010:CDS
TAAAATTGAAAGCAAAATTA+AGG 0.224504 1_2:-51774467 Msa0076010:CDS
CTTCAGAATTGTGTCTCTTC+TGG 0.280628 1_2:+51773869 None:intergenic
GGTATCTCCACATAGCTTAT+AGG 0.280802 1_2:+51773688 None:intergenic
TCCTGTTAGGGTTATATTGC+AGG 0.288637 1_2:-51774085 Msa0076010:CDS
AGTATTGAACGATTCGTCTT+AGG 0.302769 1_2:+51773631 None:intergenic
GTTTGTGCTTAAGAAAATTC+AGG 0.305686 1_2:-51773935 Msa0076010:CDS
GTTCGGCCCTATATTGAAAT+TGG 0.307938 1_2:+51774349 None:intergenic
GTATCGATTATTTGGGTAAA+GGG 0.327727 1_2:-51774290 Msa0076010:CDS
TGTTCGAATCAATGATATTT+CGG 0.328396 1_2:-51773746 Msa0076010:CDS
ACTAGGTAACCGAAGGGTTT+AGG 0.329178 1_2:+51773667 None:intergenic
TGTTTCCCCTCGAGATGTTA+TGG 0.333335 1_2:-51773899 Msa0076010:CDS
CGTGCCTCATGATCAGAAAT+TGG 0.343971 1_2:-51774151 Msa0076010:CDS
ACTCGAGTAAGAGGACAATT+TGG 0.352436 1_2:-51773973 Msa0076010:CDS
TGGTGACCAATTTCAATATA+GGG 0.354159 1_2:-51774355 Msa0076010:CDS
CGACACCGTCCCTTATATTA+GGG 0.366069 1_2:+51774172 None:intergenic
CGCGCGGAAATCTTGCTTTG+TGG 0.366478 1_2:-51774128 Msa0076010:CDS
ATATAAAGGATGATTTCATT+TGG 0.370033 1_2:+51773500 None:intergenic
ATGGTGGTAACCCTAATATA+AGG 0.370183 1_2:-51774182 Msa0076010:CDS
ATAGGTGTCACCACCCGAAT+AGG 0.370547 1_2:+51773706 None:intergenic
TATAAAGGATGATTTCATTT+GGG 0.376053 1_2:+51773501 None:intergenic
ACCTGCAATATAACCCTAAC+AGG 0.380684 1_2:+51774084 None:intergenic
GGGTAAAGGGGAGGGTTCTT+TGG 0.380696 1_2:-51774277 Msa0076010:CDS
TCTGGTTGTTTGCTTTATGA+AGG 0.381509 1_2:-51774207 Msa0076010:CDS
AATTTGCTACTGTGGTTCAT+TGG 0.383046 1_2:-51772931 Msa0076010:CDS
TGAATGCGGGGAGTCCTGTT+AGG 0.386175 1_2:-51774098 Msa0076010:CDS
GCAAAGAAAAGTTCCCTATT+CGG 0.386328 1_2:-51773720 Msa0076010:CDS
TCTTATTCATACATATATGA+TGG 0.403540 1_2:-51774018 Msa0076010:CDS
TTGGTGACCAATTTCAATAT+AGG 0.405625 1_2:-51774356 Msa0076010:CDS
CAAAGAAAAGTTCCCTATTC+GGG 0.406699 1_2:-51773719 Msa0076010:CDS
GTTTCCCCTCGAGATGTTAT+GGG 0.409974 1_2:-51773898 Msa0076010:CDS
GCGAATGTTATGAAGTCTTC+TGG 0.411419 1_2:-51774225 Msa0076010:CDS
AAAATTGAAAGCAAAATTAA+GGG 0.414139 1_2:-51774466 Msa0076010:CDS
GATGAGTATACAATTAATAT+AGG 0.418381 1_2:-51773265 Msa0076010:intron
AGGGCCACACTCATATATAA+AGG 0.421860 1_2:+51773486 None:intergenic
CTTCATAAACCTTGTAGCTT+CGG 0.427305 1_2:+51774437 None:intergenic
AAGACGAATCGTTCAATACT+AGG 0.428100 1_2:-51773628 Msa0076010:CDS
TCATGTGGTATCGATTATTT+GGG 0.431263 1_2:-51774297 Msa0076010:CDS
ACATCTTTCACAACTAGGTT+AGG 0.431941 1_2:+51773080 None:intergenic
CAAAATGTTGTTTGCTACAA+AGG 0.440548 1_2:-51773024 Msa0076010:CDS
GAGCTCACACACAAAGCTTC+CGG 0.447492 1_2:+51773342 None:intergenic
GAAAACACCGGAAAGAGAAT+AGG 0.449177 1_2:-51774399 Msa0076010:CDS
AGGGCCGAACTTATTGTAAT+CGG 0.452930 1_2:-51774336 Msa0076010:CDS
AAAACACCGGAAAGAGAATA+GGG 0.465297 1_2:-51774398 Msa0076010:CDS
GATTATTTGGGTAAAGGGGA+GGG 0.467741 1_2:-51774285 Msa0076010:CDS
AATCTTCAAAACAAAATTGA+AGG 0.468829 1_2:-51773398 Msa0076010:CDS
AAGAGAATAGGGCATGTAGA+TGG 0.472138 1_2:-51774387 Msa0076010:CDS
ATCAGCCGAGTGAGTCAATC+AGG 0.475838 1_2:-51773439 Msa0076010:CDS
GGTATCGATTATTTGGGTAA+AGG 0.478346 1_2:-51774291 Msa0076010:CDS
GACAATGTGACTCGAGTAAG+AGG 0.478502 1_2:-51773982 Msa0076010:CDS
TTATGAAGGCGAAACGTCAA+TGG 0.484134 1_2:-51774422 Msa0076010:CDS
TAGGTGTCACCACCCGAATA+GGG 0.488457 1_2:+51773707 None:intergenic
TACCACATGAGTGTTGTTGA+TGG 0.494297 1_2:+51774310 None:intergenic
TAAGAAAATTCAGGACCAAC+CGG 0.497017 1_2:-51773926 Msa0076010:CDS
CTTATTCATACATATATGAT+GGG 0.498680 1_2:-51774017 Msa0076010:CDS
ATTGATTCGAACAACATCCT+TGG 0.502629 1_2:+51773756 None:intergenic
CGATTATTTGGGTAAAGGGG+AGG 0.503266 1_2:-51774286 Msa0076010:CDS
AGCTTTGTGTGTGAGCTCAT+TGG 0.503294 1_2:-51773337 Msa0076010:CDS
TTCATTGATGCAACGCGACA+TGG 0.503420 1_2:-51773137 Msa0076010:CDS
ACATAACATCTTTCACAACT+AGG 0.508844 1_2:+51773075 None:intergenic
CAAAACAAAATTGAAGGGGT+GGG 0.513316 1_2:-51773392 Msa0076010:CDS
GGGCTTTAGCCGAAGCTACA+AGG 0.516710 1_2:-51774446 Msa0076010:CDS
ATGGACAAATCTACATTTGA+AGG 0.517049 1_2:-51772902 None:intergenic
ACGAGGAACACAAGCAAGAA+GGG 0.521209 1_2:+51773467 None:intergenic
TTGGGAGAAAGCGTGAAGAA+TGG 0.523029 1_2:-51774629 Msa0076010:CDS
GACGAGGAACACAAGCAAGA+AGG 0.525389 1_2:+51773466 None:intergenic
ACACGCTCTTTCATTCCATC+CGG 0.526296 1_2:-51773361 Msa0076010:CDS
TGGTGGTAACCCTAATATAA+GGG 0.526528 1_2:-51774181 Msa0076010:CDS
AAACATTCTTTGGGAGAACA+TGG 0.531170 1_2:+51773845 None:intergenic
CATGTAGATGGAATTGAAGT+TGG 0.532327 1_2:-51774375 Msa0076010:CDS
TTGAGTAAAATTTGCTACTG+TGG 0.533623 1_2:-51772939 Msa0076010:CDS
GAATGCGGGGAGTCCTGTTA+GGG 0.541817 1_2:-51774097 Msa0076010:CDS
GAGACCGATTACAATAAGTT+CGG 0.543201 1_2:+51774332 None:intergenic
GCAACGCGACATGGAAACAT+TGG 0.543624 1_2:-51773128 Msa0076010:CDS
TCAAAACAAAATTGAAGGGG+TGG 0.543766 1_2:-51773393 Msa0076010:CDS
CGAAGCTACAAGGTTTATGA+AGG 0.543860 1_2:-51774436 Msa0076010:CDS
ATCTTCAAAACAAAATTGAA+GGG 0.544882 1_2:-51773397 Msa0076010:CDS
TATGAAGGCGAAACGTCAAT+GGG 0.552062 1_2:-51774421 Msa0076010:CDS
AAAACAAAATTGAAGGGGTG+GGG 0.557230 1_2:-51773391 Msa0076010:CDS
TAGAGGTCTTGTTCTCTCCA+AGG 0.558562 1_2:-51773773 Msa0076010:CDS
TCTATGAGTTACAACAATGC+TGG 0.561265 1_2:+51774251 None:intergenic
TTTGCATAGCTAAGAATGGC+GGG 0.567635 1_2:-51773558 Msa0076010:CDS
GTGGAGATACCTAAACCCTT+CGG 0.568688 1_2:-51773676 Msa0076010:CDS
GGCGGGACATTAGCCTATGA+TGG 0.570158 1_2:-51773541 Msa0076010:CDS
TTATCTTGTCAGAAGATGAA+AGG 0.571853 1_2:+51774592 None:intergenic
CGCGACATGGAAACATTGGA+AGG 0.575552 1_2:-51773124 Msa0076010:CDS
TGTTTGCTTTATGAAGGTCA+TGG 0.576682 1_2:-51774201 Msa0076010:CDS
TTGGTTTCCATAACATCTCG+AGG 0.577098 1_2:+51773820 None:intergenic
CGAATCAATGATATTTCGGA+GGG 0.577253 1_2:-51773742 Msa0076010:CDS
CAGAAGAGACACAATTCTGA+AGG 0.581158 1_2:-51773868 Msa0076010:CDS
TTGCTGCAAGGTGAACATCA+AGG 0.582980 1_2:-51772964 Msa0076010:CDS
TAACTCAGCTCTCTACCTGC+GGG 0.583390 1_2:+51772996 None:intergenic
CGCGCCAATTTCTGATCATG+AGG 0.587346 1_2:+51774147 None:intergenic
AATCGTTCAATACTAGGTGG+TGG 0.591568 1_2:-51773622 Msa0076010:CDS
TTGTGGAATAGTATGAATGC+GGG 0.595742 1_2:-51774111 Msa0076010:CDS
CATATTGACTAGGTAACCGA+AGG 0.601280 1_2:+51773660 None:intergenic
TCTCGAGGGGAAACACTAGC+CGG 0.615076 1_2:+51773907 None:intergenic
TGTGGTTCATTGGAATGCAA+TGG 0.618637 1_2:-51772921 Msa0076010:CDS
AAAGTTCCCATAACATCTCG+AGG 0.623289 1_2:+51773892 None:intergenic
TGTGTTTGCATAGCTAAGAA+TGG 0.625244 1_2:-51773562 Msa0076010:CDS
TATCGATTATTTGGGTAAAG+GGG 0.626149 1_2:-51774289 Msa0076010:CDS
TCTTCAAAACAAAATTGAAG+GGG 0.626316 1_2:-51773396 Msa0076010:CDS
TCGAATCAATGATATTTCGG+AGG 0.627900 1_2:-51773743 Msa0076010:CDS
GAGGGGAAACACTAGCCGGT+TGG 0.631704 1_2:+51773911 None:intergenic
ATAACTCAGCTCTCTACCTG+CGG 0.634593 1_2:+51772995 None:intergenic
CACTCGGCTGATGCAAGACG+AGG 0.637041 1_2:+51773450 None:intergenic
AAGTTCCCATAACATCTCGA+GGG 0.638178 1_2:+51773893 None:intergenic
TCATCCTTTATATATGAGTG+TGG 0.641509 1_2:-51773490 Msa0076010:CDS
GGTGACACCTATAAGCTATG+TGG 0.646281 1_2:-51773695 Msa0076010:CDS
TAGGATAAGTCATATTGACT+AGG 0.651688 1_2:+51773650 None:intergenic
GCTACAAAGGACATACCCGC+AGG 0.652394 1_2:-51773011 Msa0076010:CDS
GGTAACCCTAATATAAGGGA+CGG 0.664705 1_2:-51774177 Msa0076010:CDS
CTCCATCAACAACACTCATG+TGG 0.665071 1_2:-51774312 Msa0076010:CDS
GAATACCTGATTGACTCACT+CGG 0.670365 1_2:+51773434 None:intergenic
AGTTCCCATAACATCTCGAG+GGG 0.674068 1_2:+51773894 None:intergenic
ATATTGACTAGGTAACCGAA+GGG 0.676746 1_2:+51773661 None:intergenic
TCACACACAAAGCTTCCGGA+TGG 0.681981 1_2:+51773346 None:intergenic
AGAAAAGTTCCCTATTCGGG+TGG 0.682829 1_2:-51773716 Msa0076010:CDS
AAACGTCAATGGGAAAACAC+CGG 0.685237 1_2:-51774411 Msa0076010:CDS
TGTGGAATAGTATGAATGCG+GGG 0.700340 1_2:-51774110 Msa0076010:CDS
CATGATCAGAAATTGGCGCG+CGG 0.700635 1_2:-51774144 Msa0076010:CDS
TTTGTGGAATAGTATGAATG+CGG 0.704358 1_2:-51774112 Msa0076010:CDS
TTGCTTTATGAAGGTCATGG+TGG 0.708605 1_2:-51774198 Msa0076010:CDS
GTTTGCATAGCTAAGAATGG+CGG 0.718623 1_2:-51773559 Msa0076010:CDS
TTATGATTACAATTGCTGCA+AGG 0.726923 1_2:-51772976 Msa0076010:CDS
ACGAATCGTTCAATACTAGG+TGG 0.728138 1_2:-51773625 Msa0076010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAGCATTAACAATTTTT+AGG - chr1_2:51773017-51773036 Msa0076010:CDS 15.0%
!!! TAAAGCATTAACAATTTTTA+GGG - chr1_2:51773018-51773037 Msa0076010:CDS 15.0%
!! TAAAATTGAAAGCAAAATTA+AGG - chr1_2:51773086-51773105 Msa0076010:CDS 15.0%
!! AAAATTGAAAGCAAAATTAA+GGG - chr1_2:51773087-51773106 Msa0076010:CDS 15.0%
!!! ATAAAGCATTAACAATTTTT+AGG - chr1_2:51773017-51773036 Msa0076010:CDS 15.0%
!!! TAAAGCATTAACAATTTTTA+GGG - chr1_2:51773018-51773037 Msa0076010:CDS 15.0%
!! TAAAATTGAAAGCAAAATTA+AGG - chr1_2:51773086-51773105 Msa0076010:CDS 15.0%
!! AAAATTGAAAGCAAAATTAA+GGG - chr1_2:51773087-51773106 Msa0076010:CDS 15.0%
!!! AATTTTGCTTTCAATTTTAC+AGG + chr1_2:51773085-51773104 None:intergenic 20.0%
!! TCTTATTCATACATATATGA+TGG - chr1_2:51773535-51773554 Msa0076010:CDS 20.0%
!! CTTATTCATACATATATGAT+GGG - chr1_2:51773536-51773555 Msa0076010:CDS 20.0%
!! TATAAAGGATGATTTCATTT+GGG + chr1_2:51774055-51774074 None:intergenic 20.0%
!! ATATAAAGGATGATTTCATT+TGG + chr1_2:51774056-51774075 None:intergenic 20.0%
!! AATCTTCAAAACAAAATTGA+AGG - chr1_2:51774155-51774174 Msa0076010:CDS 20.0%
!! ATCTTCAAAACAAAATTGAA+GGG - chr1_2:51774156-51774175 Msa0076010:CDS 20.0%
!! GATGAGTATACAATTAATAT+AGG - chr1_2:51774288-51774307 Msa0076010:CDS 20.0%
!!! AATTTTGCTTTCAATTTTAC+AGG + chr1_2:51773085-51773104 None:intergenic 20.0%
!! TCTTATTCATACATATATGA+TGG - chr1_2:51773535-51773554 Msa0076010:CDS 20.0%
!! CTTATTCATACATATATGAT+GGG - chr1_2:51773536-51773555 Msa0076010:CDS 20.0%
!! TATAAAGGATGATTTCATTT+GGG + chr1_2:51774055-51774074 None:intergenic 20.0%
!! ATATAAAGGATGATTTCATT+TGG + chr1_2:51774056-51774075 None:intergenic 20.0%
!! AATCTTCAAAACAAAATTGA+AGG - chr1_2:51774155-51774174 Msa0076010:CDS 20.0%
!! ATCTTCAAAACAAAATTGAA+GGG - chr1_2:51774156-51774175 Msa0076010:CDS 20.0%
!! GATGAGTATACAATTAATAT+AGG - chr1_2:51774288-51774307 Msa0076010:CDS 20.0%
!! ATGCAAAGTTCAAAATCTTT+TGG - chr1_2:51772905-51772924 Msa0076010:CDS 25.0%
!! TGCAAAGTTCAAAATCTTTT+GGG - chr1_2:51772906-51772925 Msa0076010:CDS 25.0%
! TGTTCGAATCAATGATATTT+CGG - chr1_2:51773807-51773826 Msa0076010:CDS 25.0%
!!! TTGTTTTGAAGATTTCAAGT+TGG + chr1_2:51774149-51774168 None:intergenic 25.0%
! TCTTCAAAACAAAATTGAAG+GGG - chr1_2:51774157-51774176 Msa0076010:CDS 25.0%
!! TGATGTTTTATGCATTTTGT+AGG - chr1_2:51774377-51774396 Msa0076010:CDS 25.0%
!! ATGCAAAGTTCAAAATCTTT+TGG - chr1_2:51772905-51772924 Msa0076010:CDS 25.0%
!! TGCAAAGTTCAAAATCTTTT+GGG - chr1_2:51772906-51772925 Msa0076010:CDS 25.0%
! TGTTCGAATCAATGATATTT+CGG - chr1_2:51773807-51773826 Msa0076010:CDS 25.0%
!!! TTGTTTTGAAGATTTCAAGT+TGG + chr1_2:51774149-51774168 None:intergenic 25.0%
! TCTTCAAAACAAAATTGAAG+GGG - chr1_2:51774157-51774176 Msa0076010:CDS 25.0%
!! TGATGTTTTATGCATTTTGT+AGG - chr1_2:51774377-51774396 Msa0076010:CDS 25.0%
TTATCTTGTCAGAAGATGAA+AGG + chr1_2:51772964-51772983 None:intergenic 30.0%
! TTGCTTTCAATTTTACAGGT+TGG + chr1_2:51773081-51773100 None:intergenic 30.0%
! TTGGTGACCAATTTCAATAT+AGG - chr1_2:51773197-51773216 Msa0076010:intron 30.0%
TGGTGACCAATTTCAATATA+GGG - chr1_2:51773198-51773217 Msa0076010:intron 30.0%
!! TCATGTGGTATCGATTATTT+GGG - chr1_2:51773256-51773275 Msa0076010:intron 30.0%
!! GTATCGATTATTTGGGTAAA+GGG - chr1_2:51773263-51773282 Msa0076010:intron 30.0%
! TATCGATTATTTGGGTAAAG+GGG - chr1_2:51773264-51773283 Msa0076010:intron 30.0%
TTTGTGGAATAGTATGAATG+CGG - chr1_2:51773441-51773460 Msa0076010:CDS 30.0%
! TTCTGAAAAATCTGAAGTGA+TGG - chr1_2:51773492-51773511 Msa0076010:CDS 30.0%
!!! ATATGATGGGTTGTATTTTG+TGG - chr1_2:51773549-51773568 Msa0076010:CDS 30.0%
GTTTGTGCTTAAGAAAATTC+AGG - chr1_2:51773618-51773637 Msa0076010:CDS 30.0%
!!! TTGTCTTTTTCGGAAAGTTT+TGG + chr1_2:51773755-51773774 None:intergenic 30.0%
! CTCTAGACATTTGTCTTTTT+CGG + chr1_2:51773765-51773784 None:intergenic 30.0%
! TAGGATAAGTCATATTGACT+AGG + chr1_2:51773906-51773925 None:intergenic 30.0%
! AAGTTTTCTGTTACCATCAT+AGG + chr1_2:51774028-51774047 None:intergenic 30.0%
TCATCCTTTATATATGAGTG+TGG - chr1_2:51774063-51774082 Msa0076010:CDS 30.0%
CATCTCAACAACAAAAAAGT+TGG - chr1_2:51774249-51774268 Msa0076010:CDS 30.0%
ACATAACATCTTTCACAACT+AGG + chr1_2:51774481-51774500 None:intergenic 30.0%
! TGTAGCAAACAACATTTTGT+GGG + chr1_2:51774528-51774547 None:intergenic 30.0%
! TTGTAGCAAACAACATTTTG+TGG + chr1_2:51774529-51774548 None:intergenic 30.0%
! CAAAATGTTGTTTGCTACAA+AGG - chr1_2:51774529-51774548 Msa0076010:CDS 30.0%
TTATGATTACAATTGCTGCA+AGG - chr1_2:51774577-51774596 Msa0076010:CDS 30.0%
!! TTGAGTAAAATTTGCTACTG+TGG - chr1_2:51774614-51774633 Msa0076010:CDS 30.0%
TTATCTTGTCAGAAGATGAA+AGG + chr1_2:51772964-51772983 None:intergenic 30.0%
! TTGCTTTCAATTTTACAGGT+TGG + chr1_2:51773081-51773100 None:intergenic 30.0%
! TTGGTGACCAATTTCAATAT+AGG - chr1_2:51773197-51773216 Msa0076010:intron 30.0%
TGGTGACCAATTTCAATATA+GGG - chr1_2:51773198-51773217 Msa0076010:intron 30.0%
!! TCATGTGGTATCGATTATTT+GGG - chr1_2:51773256-51773275 Msa0076010:intron 30.0%
!! GTATCGATTATTTGGGTAAA+GGG - chr1_2:51773263-51773282 Msa0076010:intron 30.0%
! TATCGATTATTTGGGTAAAG+GGG - chr1_2:51773264-51773283 Msa0076010:intron 30.0%
TTTGTGGAATAGTATGAATG+CGG - chr1_2:51773441-51773460 Msa0076010:CDS 30.0%
! TTCTGAAAAATCTGAAGTGA+TGG - chr1_2:51773492-51773511 Msa0076010:CDS 30.0%
!!! ATATGATGGGTTGTATTTTG+TGG - chr1_2:51773549-51773568 Msa0076010:CDS 30.0%
GTTTGTGCTTAAGAAAATTC+AGG - chr1_2:51773618-51773637 Msa0076010:CDS 30.0%
!!! TTGTCTTTTTCGGAAAGTTT+TGG + chr1_2:51773755-51773774 None:intergenic 30.0%
! CTCTAGACATTTGTCTTTTT+CGG + chr1_2:51773765-51773784 None:intergenic 30.0%
! TAGGATAAGTCATATTGACT+AGG + chr1_2:51773906-51773925 None:intergenic 30.0%
! AAGTTTTCTGTTACCATCAT+AGG + chr1_2:51774028-51774047 None:intergenic 30.0%
TCATCCTTTATATATGAGTG+TGG - chr1_2:51774063-51774082 Msa0076010:CDS 30.0%
CATCTCAACAACAAAAAAGT+TGG - chr1_2:51774249-51774268 Msa0076010:CDS 30.0%
ACATAACATCTTTCACAACT+AGG + chr1_2:51774481-51774500 None:intergenic 30.0%
! TGTAGCAAACAACATTTTGT+GGG + chr1_2:51774528-51774547 None:intergenic 30.0%
! TTGTAGCAAACAACATTTTG+TGG + chr1_2:51774529-51774548 None:intergenic 30.0%
! CAAAATGTTGTTTGCTACAA+AGG - chr1_2:51774529-51774548 Msa0076010:CDS 30.0%
TTATGATTACAATTGCTGCA+AGG - chr1_2:51774577-51774596 Msa0076010:CDS 30.0%
!! TTGAGTAAAATTTGCTACTG+TGG - chr1_2:51774614-51774633 Msa0076010:CDS 30.0%
!!! GTAGTGACACTGTTTTGAAA+CGG - chr1_2:51772984-51773003 Msa0076010:CDS 35.0%
CTTCATAAACCTTGTAGCTT+CGG + chr1_2:51773119-51773138 None:intergenic 35.0%
AAAACACCGGAAAGAGAATA+GGG - chr1_2:51773155-51773174 Msa0076010:CDS 35.0%
CATGTAGATGGAATTGAAGT+TGG - chr1_2:51773178-51773197 Msa0076010:intron 35.0%
GAGACCGATTACAATAAGTT+CGG + chr1_2:51773224-51773243 None:intergenic 35.0%
!! CTCATGTGGTATCGATTATT+TGG - chr1_2:51773255-51773274 Msa0076010:intron 35.0%
!! GGTATCGATTATTTGGGTAA+AGG - chr1_2:51773262-51773281 Msa0076010:intron 35.0%
TCTATGAGTTACAACAATGC+TGG + chr1_2:51773305-51773324 None:intergenic 35.0%
TCTGGTTGTTTGCTTTATGA+AGG - chr1_2:51773346-51773365 Msa0076010:CDS 35.0%
TGTTTGCTTTATGAAGGTCA+TGG - chr1_2:51773352-51773371 Msa0076010:CDS 35.0%
ATGGTGGTAACCCTAATATA+AGG - chr1_2:51773371-51773390 Msa0076010:CDS 35.0%
TGGTGGTAACCCTAATATAA+GGG - chr1_2:51773372-51773391 Msa0076010:CDS 35.0%
TTGTGGAATAGTATGAATGC+GGG - chr1_2:51773442-51773461 Msa0076010:CDS 35.0%
TAAGAAAATTCAGGACCAAC+CGG - chr1_2:51773627-51773646 Msa0076010:CDS 35.0%
! AAACATTCTTTGGGAGAACA+TGG + chr1_2:51773711-51773730 None:intergenic 35.0%
CTCGAGGAAAAACATTCTTT+GGG + chr1_2:51773720-51773739 None:intergenic 35.0%
TCTCGAGGAAAAACATTCTT+TGG + chr1_2:51773721-51773740 None:intergenic 35.0%
! TGTTTTTCCTCGAGATGTTA+TGG - chr1_2:51773726-51773745 Msa0076010:CDS 35.0%
CGAAAAAGACAAATGTCTAG+AGG - chr1_2:51773763-51773782 Msa0076010:CDS 35.0%
!! ATTGATTCGAACAACATCCT+TGG + chr1_2:51773800-51773819 None:intergenic 35.0%
TCGAATCAATGATATTTCGG+AGG - chr1_2:51773810-51773829 Msa0076010:CDS 35.0%
CGAATCAATGATATTTCGGA+GGG - chr1_2:51773811-51773830 Msa0076010:CDS 35.0%
GCAAAGAAAAGTTCCCTATT+CGG - chr1_2:51773833-51773852 Msa0076010:CDS 35.0%
CAAAGAAAAGTTCCCTATTC+GGG - chr1_2:51773834-51773853 Msa0076010:CDS 35.0%
! ATATTGACTAGGTAACCGAA+GGG + chr1_2:51773895-51773914 None:intergenic 35.0%
! AGTATTGAACGATTCGTCTT+AGG + chr1_2:51773925-51773944 None:intergenic 35.0%
AAGACGAATCGTTCAATACT+AGG - chr1_2:51773925-51773944 Msa0076010:CDS 35.0%
TGTGTTTGCATAGCTAAGAA+TGG - chr1_2:51773991-51774010 Msa0076010:CDS 35.0%
TCAAAACAAAATTGAAGGGG+TGG - chr1_2:51774160-51774179 Msa0076010:CDS 35.0%
CAAAACAAAATTGAAGGGGT+GGG - chr1_2:51774161-51774180 Msa0076010:CDS 35.0%
AAAACAAAATTGAAGGGGTG+GGG - chr1_2:51774162-51774181 Msa0076010:CDS 35.0%
ACATCTTTCACAACTAGGTT+AGG + chr1_2:51774476-51774495 None:intergenic 35.0%
! GTAGCAAACAACATTTTGTG+GGG + chr1_2:51774527-51774546 None:intergenic 35.0%
!! AATTTGCTACTGTGGTTCAT+TGG - chr1_2:51774622-51774641 Msa0076010:CDS 35.0%
!!! GTAGTGACACTGTTTTGAAA+CGG - chr1_2:51772984-51773003 Msa0076010:CDS 35.0%
CTTCATAAACCTTGTAGCTT+CGG + chr1_2:51773119-51773138 None:intergenic 35.0%
AAAACACCGGAAAGAGAATA+GGG - chr1_2:51773155-51773174 Msa0076010:CDS 35.0%
CATGTAGATGGAATTGAAGT+TGG - chr1_2:51773178-51773197 Msa0076010:intron 35.0%
GAGACCGATTACAATAAGTT+CGG + chr1_2:51773224-51773243 None:intergenic 35.0%
!! CTCATGTGGTATCGATTATT+TGG - chr1_2:51773255-51773274 Msa0076010:intron 35.0%
!! GGTATCGATTATTTGGGTAA+AGG - chr1_2:51773262-51773281 Msa0076010:intron 35.0%
TCTATGAGTTACAACAATGC+TGG + chr1_2:51773305-51773324 None:intergenic 35.0%
TCTGGTTGTTTGCTTTATGA+AGG - chr1_2:51773346-51773365 Msa0076010:CDS 35.0%
TGTTTGCTTTATGAAGGTCA+TGG - chr1_2:51773352-51773371 Msa0076010:CDS 35.0%
ATGGTGGTAACCCTAATATA+AGG - chr1_2:51773371-51773390 Msa0076010:CDS 35.0%
TGGTGGTAACCCTAATATAA+GGG - chr1_2:51773372-51773391 Msa0076010:CDS 35.0%
TTGTGGAATAGTATGAATGC+GGG - chr1_2:51773442-51773461 Msa0076010:CDS 35.0%
TAAGAAAATTCAGGACCAAC+CGG - chr1_2:51773627-51773646 Msa0076010:CDS 35.0%
! AAACATTCTTTGGGAGAACA+TGG + chr1_2:51773711-51773730 None:intergenic 35.0%
CTCGAGGAAAAACATTCTTT+GGG + chr1_2:51773720-51773739 None:intergenic 35.0%
TCTCGAGGAAAAACATTCTT+TGG + chr1_2:51773721-51773740 None:intergenic 35.0%
! TGTTTTTCCTCGAGATGTTA+TGG - chr1_2:51773726-51773745 Msa0076010:CDS 35.0%
CGAAAAAGACAAATGTCTAG+AGG - chr1_2:51773763-51773782 Msa0076010:CDS 35.0%
!! ATTGATTCGAACAACATCCT+TGG + chr1_2:51773800-51773819 None:intergenic 35.0%
TCGAATCAATGATATTTCGG+AGG - chr1_2:51773810-51773829 Msa0076010:CDS 35.0%
CGAATCAATGATATTTCGGA+GGG - chr1_2:51773811-51773830 Msa0076010:CDS 35.0%
GCAAAGAAAAGTTCCCTATT+CGG - chr1_2:51773833-51773852 Msa0076010:CDS 35.0%
CAAAGAAAAGTTCCCTATTC+GGG - chr1_2:51773834-51773853 Msa0076010:CDS 35.0%
! ATATTGACTAGGTAACCGAA+GGG + chr1_2:51773895-51773914 None:intergenic 35.0%
! AGTATTGAACGATTCGTCTT+AGG + chr1_2:51773925-51773944 None:intergenic 35.0%
AAGACGAATCGTTCAATACT+AGG - chr1_2:51773925-51773944 Msa0076010:CDS 35.0%
TGTGTTTGCATAGCTAAGAA+TGG - chr1_2:51773991-51774010 Msa0076010:CDS 35.0%
TCAAAACAAAATTGAAGGGG+TGG - chr1_2:51774160-51774179 Msa0076010:CDS 35.0%
CAAAACAAAATTGAAGGGGT+GGG - chr1_2:51774161-51774180 Msa0076010:CDS 35.0%
AAAACAAAATTGAAGGGGTG+GGG - chr1_2:51774162-51774181 Msa0076010:CDS 35.0%
ACATCTTTCACAACTAGGTT+AGG + chr1_2:51774476-51774495 None:intergenic 35.0%
! GTAGCAAACAACATTTTGTG+GGG + chr1_2:51774527-51774546 None:intergenic 35.0%
!! AATTTGCTACTGTGGTTCAT+TGG - chr1_2:51774622-51774641 Msa0076010:CDS 35.0%
!!! CACTGTTTTGAAACGGAGAA+AGG - chr1_2:51772991-51773010 Msa0076010:CDS 40.0%
CGAAGCTACAAGGTTTATGA+AGG - chr1_2:51773117-51773136 Msa0076010:CDS 40.0%
TTATGAAGGCGAAACGTCAA+TGG - chr1_2:51773131-51773150 Msa0076010:CDS 40.0%
TATGAAGGCGAAACGTCAAT+GGG - chr1_2:51773132-51773151 Msa0076010:CDS 40.0%
AAACGTCAATGGGAAAACAC+CGG - chr1_2:51773142-51773161 Msa0076010:CDS 40.0%
GAAAACACCGGAAAGAGAAT+AGG - chr1_2:51773154-51773173 Msa0076010:CDS 40.0%
TACATGCCCTATTCTCTTTC+CGG + chr1_2:51773164-51773183 None:intergenic 40.0%
AAGAGAATAGGGCATGTAGA+TGG - chr1_2:51773166-51773185 Msa0076010:intron 40.0%
GTTCGGCCCTATATTGAAAT+TGG + chr1_2:51773207-51773226 None:intergenic 40.0%
AGGGCCGAACTTATTGTAAT+CGG - chr1_2:51773217-51773236 Msa0076010:intron 40.0%
! TACCACATGAGTGTTGTTGA+TGG + chr1_2:51773246-51773265 None:intergenic 40.0%
GATTATTTGGGTAAAGGGGA+GGG - chr1_2:51773268-51773287 Msa0076010:CDS 40.0%
GCGAATGTTATGAAGTCTTC+TGG - chr1_2:51773328-51773347 Msa0076010:CDS 40.0%
TTGCTTTATGAAGGTCATGG+TGG - chr1_2:51773355-51773374 Msa0076010:CDS 40.0%
GGTAACCCTAATATAAGGGA+CGG - chr1_2:51773376-51773395 Msa0076010:CDS 40.0%
TGTGGAATAGTATGAATGCG+GGG - chr1_2:51773443-51773462 Msa0076010:CDS 40.0%
TCCTGTTAGGGTTATATTGC+AGG - chr1_2:51773468-51773487 Msa0076010:CDS 40.0%
ACCTGCAATATAACCCTAAC+AGG + chr1_2:51773472-51773491 None:intergenic 40.0%
ACTCGAGTAAGAGGACAATT+TGG - chr1_2:51773580-51773599 Msa0076010:CDS 40.0%
AAGTTCCCATAACATCTCGA+GGG + chr1_2:51773663-51773682 None:intergenic 40.0%
AAAGTTCCCATAACATCTCG+AGG + chr1_2:51773664-51773683 None:intergenic 40.0%
CTTCAGAATTGTGTCTCTTC+TGG + chr1_2:51773687-51773706 None:intergenic 40.0%
CAGAAGAGACACAATTCTGA+AGG - chr1_2:51773685-51773704 Msa0076010:CDS 40.0%
TTGGTTTCCATAACATCTCG+AGG + chr1_2:51773736-51773755 None:intergenic 40.0%
GGTATCTCCACATAGCTTAT+AGG + chr1_2:51773868-51773887 None:intergenic 40.0%
! CATATTGACTAGGTAACCGA+AGG + chr1_2:51773896-51773915 None:intergenic 40.0%
ACGAATCGTTCAATACTAGG+TGG - chr1_2:51773928-51773947 Msa0076010:CDS 40.0%
AATCGTTCAATACTAGGTGG+TGG - chr1_2:51773931-51773950 Msa0076010:CDS 40.0%
GTTTGCATAGCTAAGAATGG+CGG - chr1_2:51773994-51774013 Msa0076010:CDS 40.0%
TTTGCATAGCTAAGAATGGC+GGG - chr1_2:51773995-51774014 Msa0076010:CDS 40.0%
AGGGCCACACTCATATATAA+AGG + chr1_2:51774070-51774089 None:intergenic 40.0%
! GAATACCTGATTGACTCACT+CGG + chr1_2:51774122-51774141 None:intergenic 40.0%
! ATGCATTTTGTAGGTGCTTC+TGG - chr1_2:51774386-51774405 Msa0076010:CDS 40.0%
TGTGGTTCATTGGAATGCAA+TGG - chr1_2:51774632-51774651 Msa0076010:CDS 40.0%
!!! CACTGTTTTGAAACGGAGAA+AGG - chr1_2:51772991-51773010 Msa0076010:CDS 40.0%
CGAAGCTACAAGGTTTATGA+AGG - chr1_2:51773117-51773136 Msa0076010:CDS 40.0%
TTATGAAGGCGAAACGTCAA+TGG - chr1_2:51773131-51773150 Msa0076010:CDS 40.0%
TATGAAGGCGAAACGTCAAT+GGG - chr1_2:51773132-51773151 Msa0076010:CDS 40.0%
AAACGTCAATGGGAAAACAC+CGG - chr1_2:51773142-51773161 Msa0076010:CDS 40.0%
GAAAACACCGGAAAGAGAAT+AGG - chr1_2:51773154-51773173 Msa0076010:CDS 40.0%
TACATGCCCTATTCTCTTTC+CGG + chr1_2:51773164-51773183 None:intergenic 40.0%
AAGAGAATAGGGCATGTAGA+TGG - chr1_2:51773166-51773185 Msa0076010:intron 40.0%
GTTCGGCCCTATATTGAAAT+TGG + chr1_2:51773207-51773226 None:intergenic 40.0%
AGGGCCGAACTTATTGTAAT+CGG - chr1_2:51773217-51773236 Msa0076010:intron 40.0%
! TACCACATGAGTGTTGTTGA+TGG + chr1_2:51773246-51773265 None:intergenic 40.0%
GATTATTTGGGTAAAGGGGA+GGG - chr1_2:51773268-51773287 Msa0076010:CDS 40.0%
GCGAATGTTATGAAGTCTTC+TGG - chr1_2:51773328-51773347 Msa0076010:CDS 40.0%
TTGCTTTATGAAGGTCATGG+TGG - chr1_2:51773355-51773374 Msa0076010:CDS 40.0%
GGTAACCCTAATATAAGGGA+CGG - chr1_2:51773376-51773395 Msa0076010:CDS 40.0%
TGTGGAATAGTATGAATGCG+GGG - chr1_2:51773443-51773462 Msa0076010:CDS 40.0%
TCCTGTTAGGGTTATATTGC+AGG - chr1_2:51773468-51773487 Msa0076010:CDS 40.0%
ACCTGCAATATAACCCTAAC+AGG + chr1_2:51773472-51773491 None:intergenic 40.0%
ACTCGAGTAAGAGGACAATT+TGG - chr1_2:51773580-51773599 Msa0076010:CDS 40.0%
AAGTTCCCATAACATCTCGA+GGG + chr1_2:51773663-51773682 None:intergenic 40.0%
AAAGTTCCCATAACATCTCG+AGG + chr1_2:51773664-51773683 None:intergenic 40.0%
CTTCAGAATTGTGTCTCTTC+TGG + chr1_2:51773687-51773706 None:intergenic 40.0%
CAGAAGAGACACAATTCTGA+AGG - chr1_2:51773685-51773704 Msa0076010:CDS 40.0%
TTGGTTTCCATAACATCTCG+AGG + chr1_2:51773736-51773755 None:intergenic 40.0%
GGTATCTCCACATAGCTTAT+AGG + chr1_2:51773868-51773887 None:intergenic 40.0%
! CATATTGACTAGGTAACCGA+AGG + chr1_2:51773896-51773915 None:intergenic 40.0%
ACGAATCGTTCAATACTAGG+TGG - chr1_2:51773928-51773947 Msa0076010:CDS 40.0%
AATCGTTCAATACTAGGTGG+TGG - chr1_2:51773931-51773950 Msa0076010:CDS 40.0%
GTTTGCATAGCTAAGAATGG+CGG - chr1_2:51773994-51774013 Msa0076010:CDS 40.0%
TTTGCATAGCTAAGAATGGC+GGG - chr1_2:51773995-51774014 Msa0076010:CDS 40.0%
AGGGCCACACTCATATATAA+AGG + chr1_2:51774070-51774089 None:intergenic 40.0%
! GAATACCTGATTGACTCACT+CGG + chr1_2:51774122-51774141 None:intergenic 40.0%
! ATGCATTTTGTAGGTGCTTC+TGG - chr1_2:51774386-51774405 Msa0076010:CDS 40.0%
TGTGGTTCATTGGAATGCAA+TGG - chr1_2:51774632-51774651 Msa0076010:CDS 40.0%
! TTGGGAGAAAGCGTGAAGAA+TGG - chr1_2:51772924-51772943 Msa0076010:CDS 45.0%
CTCCATCAACAACACTCATG+TGG - chr1_2:51773241-51773260 Msa0076010:intron 45.0%
CGATTATTTGGGTAAAGGGG+AGG - chr1_2:51773267-51773286 Msa0076010:CDS 45.0%
CGACACCGTCCCTTATATTA+GGG + chr1_2:51773384-51773403 None:intergenic 45.0%
ACGACACCGTCCCTTATATT+AGG + chr1_2:51773385-51773404 None:intergenic 45.0%
CGTGCCTCATGATCAGAAAT+TGG - chr1_2:51773402-51773421 Msa0076010:CDS 45.0%
GACAATGTGACTCGAGTAAG+AGG - chr1_2:51773571-51773590 Msa0076010:CDS 45.0%
TGTTTCCCCTCGAGATGTTA+TGG - chr1_2:51773654-51773673 Msa0076010:CDS 45.0%
GTTTCCCCTCGAGATGTTAT+GGG - chr1_2:51773655-51773674 Msa0076010:CDS 45.0%
AGTTCCCATAACATCTCGAG+GGG + chr1_2:51773662-51773681 None:intergenic 45.0%
!! TAGAGGTCTTGTTCTCTCCA+AGG - chr1_2:51773780-51773799 Msa0076010:CDS 45.0%
AGAAAAGTTCCCTATTCGGG+TGG - chr1_2:51773837-51773856 Msa0076010:CDS 45.0%
GGTGACACCTATAAGCTATG+TGG - chr1_2:51773858-51773877 Msa0076010:CDS 45.0%
GTGGAGATACCTAAACCCTT+CGG - chr1_2:51773877-51773896 Msa0076010:CDS 45.0%
ACTAGGTAACCGAAGGGTTT+AGG + chr1_2:51773889-51773908 None:intergenic 45.0%
ACGAGGAACACAAGCAAGAA+GGG + chr1_2:51774089-51774108 None:intergenic 45.0%
ACACGCTCTTTCATTCCATC+CGG - chr1_2:51774192-51774211 Msa0076010:CDS 45.0%
! AGCTTTGTGTGTGAGCTCAT+TGG - chr1_2:51774216-51774235 Msa0076010:CDS 45.0%
! TTTTGTAGGTGCTTCTGGCA+AGG - chr1_2:51774391-51774410 Msa0076010:CDS 45.0%
TTCATTGATGCAACGCGACA+TGG - chr1_2:51774416-51774435 Msa0076010:CDS 45.0%
ATAACTCAGCTCTCTACCTG+CGG + chr1_2:51774561-51774580 None:intergenic 45.0%
TTGCTGCAAGGTGAACATCA+AGG - chr1_2:51774589-51774608 Msa0076010:CDS 45.0%
! TTGGGAGAAAGCGTGAAGAA+TGG - chr1_2:51772924-51772943 Msa0076010:CDS 45.0%
CTCCATCAACAACACTCATG+TGG - chr1_2:51773241-51773260 Msa0076010:intron 45.0%
CGATTATTTGGGTAAAGGGG+AGG - chr1_2:51773267-51773286 Msa0076010:CDS 45.0%
CGACACCGTCCCTTATATTA+GGG + chr1_2:51773384-51773403 None:intergenic 45.0%
ACGACACCGTCCCTTATATT+AGG + chr1_2:51773385-51773404 None:intergenic 45.0%
CGTGCCTCATGATCAGAAAT+TGG - chr1_2:51773402-51773421 Msa0076010:CDS 45.0%
GACAATGTGACTCGAGTAAG+AGG - chr1_2:51773571-51773590 Msa0076010:CDS 45.0%
TGTTTCCCCTCGAGATGTTA+TGG - chr1_2:51773654-51773673 Msa0076010:CDS 45.0%
GTTTCCCCTCGAGATGTTAT+GGG - chr1_2:51773655-51773674 Msa0076010:CDS 45.0%
AGTTCCCATAACATCTCGAG+GGG + chr1_2:51773662-51773681 None:intergenic 45.0%
!! TAGAGGTCTTGTTCTCTCCA+AGG - chr1_2:51773780-51773799 Msa0076010:CDS 45.0%
AGAAAAGTTCCCTATTCGGG+TGG - chr1_2:51773837-51773856 Msa0076010:CDS 45.0%
GGTGACACCTATAAGCTATG+TGG - chr1_2:51773858-51773877 Msa0076010:CDS 45.0%
GTGGAGATACCTAAACCCTT+CGG - chr1_2:51773877-51773896 Msa0076010:CDS 45.0%
ACTAGGTAACCGAAGGGTTT+AGG + chr1_2:51773889-51773908 None:intergenic 45.0%
ACGAGGAACACAAGCAAGAA+GGG + chr1_2:51774089-51774108 None:intergenic 45.0%
ACACGCTCTTTCATTCCATC+CGG - chr1_2:51774192-51774211 Msa0076010:CDS 45.0%
! AGCTTTGTGTGTGAGCTCAT+TGG - chr1_2:51774216-51774235 Msa0076010:CDS 45.0%
! TTTTGTAGGTGCTTCTGGCA+AGG - chr1_2:51774391-51774410 Msa0076010:CDS 45.0%
TTCATTGATGCAACGCGACA+TGG - chr1_2:51774416-51774435 Msa0076010:CDS 45.0%
ATAACTCAGCTCTCTACCTG+CGG + chr1_2:51774561-51774580 None:intergenic 45.0%
TTGCTGCAAGGTGAACATCA+AGG - chr1_2:51774589-51774608 Msa0076010:CDS 45.0%
CGCGCCAATTTCTGATCATG+AGG + chr1_2:51773409-51773428 None:intergenic 50.0%
CATGATCAGAAATTGGCGCG+CGG - chr1_2:51773409-51773428 Msa0076010:CDS 50.0%
! TAGGTGTCACCACCCGAATA+GGG + chr1_2:51773849-51773868 None:intergenic 50.0%
! ATAGGTGTCACCACCCGAAT+AGG + chr1_2:51773850-51773869 None:intergenic 50.0%
GACGAGGAACACAAGCAAGA+AGG + chr1_2:51774090-51774109 None:intergenic 50.0%
ATCAGCCGAGTGAGTCAATC+AGG - chr1_2:51774114-51774133 Msa0076010:CDS 50.0%
TCACACACAAAGCTTCCGGA+TGG + chr1_2:51774210-51774229 None:intergenic 50.0%
GAGCTCACACACAAAGCTTC+CGG + chr1_2:51774214-51774233 None:intergenic 50.0%
GCAACGCGACATGGAAACAT+TGG - chr1_2:51774425-51774444 Msa0076010:CDS 50.0%
CGCGACATGGAAACATTGGA+AGG - chr1_2:51774429-51774448 Msa0076010:CDS 50.0%
TAACTCAGCTCTCTACCTGC+GGG + chr1_2:51774560-51774579 None:intergenic 50.0%
CGCGCCAATTTCTGATCATG+AGG + chr1_2:51773409-51773428 None:intergenic 50.0%
CATGATCAGAAATTGGCGCG+CGG - chr1_2:51773409-51773428 Msa0076010:CDS 50.0%
! TAGGTGTCACCACCCGAATA+GGG + chr1_2:51773849-51773868 None:intergenic 50.0%
! ATAGGTGTCACCACCCGAAT+AGG + chr1_2:51773850-51773869 None:intergenic 50.0%
GACGAGGAACACAAGCAAGA+AGG + chr1_2:51774090-51774109 None:intergenic 50.0%
ATCAGCCGAGTGAGTCAATC+AGG - chr1_2:51774114-51774133 Msa0076010:CDS 50.0%
TCACACACAAAGCTTCCGGA+TGG + chr1_2:51774210-51774229 None:intergenic 50.0%
GAGCTCACACACAAAGCTTC+CGG + chr1_2:51774214-51774233 None:intergenic 50.0%
GCAACGCGACATGGAAACAT+TGG - chr1_2:51774425-51774444 Msa0076010:CDS 50.0%
CGCGACATGGAAACATTGGA+AGG - chr1_2:51774429-51774448 Msa0076010:CDS 50.0%
TAACTCAGCTCTCTACCTGC+GGG + chr1_2:51774560-51774579 None:intergenic 50.0%
! GGGCTTTAGCCGAAGCTACA+AGG - chr1_2:51773107-51773126 Msa0076010:CDS 55.0%
GGGTAAAGGGGAGGGTTCTT+TGG - chr1_2:51773276-51773295 Msa0076010:CDS 55.0%
CGCGCGGAAATCTTGCTTTG+TGG - chr1_2:51773425-51773444 Msa0076010:CDS 55.0%
TGAATGCGGGGAGTCCTGTT+AGG - chr1_2:51773455-51773474 Msa0076010:CDS 55.0%
GAATGCGGGGAGTCCTGTTA+GGG - chr1_2:51773456-51773475 Msa0076010:CDS 55.0%
TCTCGAGGGGAAACACTAGC+CGG + chr1_2:51773649-51773668 None:intergenic 55.0%
! GGCGGGACATTAGCCTATGA+TGG - chr1_2:51774012-51774031 Msa0076010:CDS 55.0%
GCTACAAAGGACATACCCGC+AGG - chr1_2:51774542-51774561 Msa0076010:CDS 55.0%
! GGGCTTTAGCCGAAGCTACA+AGG - chr1_2:51773107-51773126 Msa0076010:CDS 55.0%
GGGTAAAGGGGAGGGTTCTT+TGG - chr1_2:51773276-51773295 Msa0076010:CDS 55.0%
CGCGCGGAAATCTTGCTTTG+TGG - chr1_2:51773425-51773444 Msa0076010:CDS 55.0%
TGAATGCGGGGAGTCCTGTT+AGG - chr1_2:51773455-51773474 Msa0076010:CDS 55.0%
GAATGCGGGGAGTCCTGTTA+GGG - chr1_2:51773456-51773475 Msa0076010:CDS 55.0%
TCTCGAGGGGAAACACTAGC+CGG + chr1_2:51773649-51773668 None:intergenic 55.0%
! GGCGGGACATTAGCCTATGA+TGG - chr1_2:51774012-51774031 Msa0076010:CDS 55.0%
GCTACAAAGGACATACCCGC+AGG - chr1_2:51774542-51774561 Msa0076010:CDS 55.0%
GAGGGGAAACACTAGCCGGT+TGG + chr1_2:51773645-51773664 None:intergenic 60.0%
CACTCGGCTGATGCAAGACG+AGG + chr1_2:51774106-51774125 None:intergenic 60.0%
GAGGGGAAACACTAGCCGGT+TGG + chr1_2:51773645-51773664 None:intergenic 60.0%
CACTCGGCTGATGCAAGACG+AGG + chr1_2:51774106-51774125 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51772905 51774670 51772905 ID=Msa0076010;Name=Msa0076010
chr1_2 mRNA 51772905 51774670 51772905 ID=Msa0076010-mRNA-1;Parent=Msa0076010;Name=Msa0076010-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|558
chr1_2 exon 51773266 51774670 51773266 ID=Msa0076010-mRNA-1:exon:15933;Parent=Msa0076010-mRNA-1
chr1_2 exon 51772905 51773176 51772905 ID=Msa0076010-mRNA-1:exon:15932;Parent=Msa0076010-mRNA-1
chr1_2 CDS 51773266 51774670 51773266 ID=Msa0076010-mRNA-1:cds;Parent=Msa0076010-mRNA-1
chr1_2 CDS 51772905 51773176 51772905 ID=Msa0076010-mRNA-1:cds;Parent=Msa0076010-mRNA-1
Gene Sequence

>Msa0076010

ATGCAAAGTTCAAAATCTTTTGGGAGAAAGCGTGAAGAATGGTCATATACTGAGAACCTTTCATCTTCTGACAAGATAAGTAGTGACACTGTTTTGAAACGGAGAAAGGTGAATAAAGCATTAACAATTTTTAGGGACTTATCACACAAACTCTATTGTGAATACAAGTCAAACCAACCTGTAAAATTGAAAGCAAAATTAAGGGCTTTAGCCGAAGCTACAAGGTTTATGAAGGCGAAACGTCAATGGGAAAACACCGGAAAGAGAATAGGGCATGTAGATGGAATTGAAGTTGGTGACCAATTTCAATATAGGGCCGAACTTATTGTAATCGGTCTCCATCAACAACACTCATGTGGTATCGATTATTTGGGTAAAGGGGAGGGTTCTTTGGCAACCAGCATTGTTGTAACTCATAGATATGCGAATGTTATGAAGTCTTCTGGTTGTTTGCTTTATGAAGGTCATGGTGGTAACCCTAATATAAGGGACGGTGTCGTGCCTCATGATCAGAAATTGGCGCGCGGAAATCTTGCTTTGTGGAATAGTATGAATGCGGGGAGTCCTGTTAGGGTTATATTGCAGGTTTCTGAAAAATCTGAAGTGATGGAAGAGTTGAGCAACAATGTTTCTTATTCATACATATATGATGGGTTGTATTTTGTGGACAATGTGACTCGAGTAAGAGGACAATTTGGAAAACTTGTTTTCAAGTTTGTGCTTAAGAAAATTCAGGACCAACCGGCTAGTGTTTCCCCTCGAGATGTTATGGGAACTTTCCAGAAGAGACACAATTCTGAAGGCCATGTTCTCCCAAAGAATGTTTTTCCTCGAGATGTTATGGAAACCAAAACTTTCCGAAAAAGACAAATGTCTAGAGGTCTTGTTCTCTCCAAGGATGTTGTTCGAATCAATGATATTTCGGAGGGCAAAGAAAAGTTCCCTATTCGGGTGGTGACACCTATAAGCTATGTGGAGATACCTAAACCCTTCGGTTACCTAGTCAATATGACTTATCCTAAGACGAATCGTTCAATACTAGGTGGTGGATGTAATTGTAAGAATGCATGTGTTGATTGTCTTGAATGTGTTTGCATAGCTAAGAATGGCGGGACATTAGCCTATGATGGTAACAGAAAACTTGTTTCCCAAATGAAATCATCCTTTATATATGAGTGTGGCCCTTCTTGCTTGTGTTCCTCGTCTTGCATCAGCCGAGTGAGTCAATCAGGTATTCAGTTCCAACTTGAAATCTTCAAAACAAAATTGAAGGGGTGGGGTGTTCGAACACGCTCTTTCATTCCATCCGGAAGCTTTGTGTGTGAGCTCATTGGAGAAGTTGTTCATCTCAACAACAAAAAAGTTGGATCAAATCTACATGTTGATGAGTATACAATTAATATAGGTGCTTCTGGCAAGGTCTTCATTGATGCAACGCGACATGGAAACATTGGAAGGTTTATAAATCATAGTTGTTCTCCTAACCTAGTTGTGAAAGATGTTATGTATGATCACAGTGATAAGAGTTTACCCCACAAAATGTTGTTTGCTACAAAGGACATACCCGCAGGTAGAGAGCTGAGTTATGATTACAATTGCTGCAAGGTGAACATCAAGGTTTTGAGTAAAATTTGCTACTGTGGTTCATTGGAATGCAATGGACAAATCTACATTTGA
Protein sequence

>Msa0076010

MQSSKSFGRKREEWSYTENLSSSDKISSDTVLKRRKVNKALTIFRDLSHKLYCEYKSNQPVKLKAKLRALAEATRFMKAKRQWENTGKRIGHVDGIEVGDQFQYRAELIVIGLHQQHSCGIDYLGKGEGSLATSIVVTHRYANVMKSSGCLLYEGHGGNPNIRDGVVPHDQKLARGNLALWNSMNAGSPVRVILQVSEKSEVMEELSNNVSYSYIYDGLYFVDNVTRVRGQFGKLVFKFVLKKIQDQPASVSPRDVMGTFQKRHNSEGHVLPKNVFPRDVMETKTFRKRQMSRGLVLSKDVVRINDISEGKEKFPIRVVTPISYVEIPKPFGYLVNMTYPKTNRSILGGGCNCKNACVDCLECVCIAKNGGTLAYDGNRKLVSQMKSSFIYECGPSCLCSSSCISRVSQSGIQFQLEIFKTKLKGWGVRTRSFIPSGSFVCELIGEVVHLNNKKVGSNLHVDEYTINIGASGKVFIDATRHGNIGRFINHSCSPNLVVKDVMYDHSDKSLPHKMLFATKDIPAGRELSYDYNCCKVNIKVLSKICYCGSLECNGQIYI*