AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0392420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392420 MtrunA17_Chr3g0077571 98.310 355 6 0 1 355 3 357 0.0 713
Msa0392420 MtrunA17_Chr8g0380041 51.648 364 166 7 1 355 1 363 1.26e-128 372
Msa0392420 MtrunA17_Chr3g0086641 51.989 352 164 4 9 355 19 370 1.41e-126 368
Msa0392420 MtrunA17_Chr2g0285061 52.408 353 162 5 9 355 13 365 2.09e-125 364
Msa0392420 MtrunA17_Chr3g0077581 47.863 351 174 6 13 355 21 370 1.93e-111 329
Msa0392420 MtrunA17_Chr4g0017431 45.429 361 187 4 5 355 3 363 5.60e-111 328
Msa0392420 MtrunA17_Chr3g0131321 45.628 366 187 5 1 354 3 368 2.41e-106 317
Msa0392420 MtrunA17_Chr2g0294301 41.274 361 203 6 2 354 8 367 2.31e-90 275
Msa0392420 MtrunA17_Chr5g0434621 43.114 334 184 5 9 338 7 338 1.28e-89 273
Msa0392420 MtrunA17_Chr2g0284991 42.779 367 186 12 3 354 2 359 2.64e-89 273
Msa0392420 MtrunA17_Chr2g0294311 40.390 359 198 6 11 354 15 372 1.82e-87 268
Msa0392420 MtrunA17_Chr8g0380031 41.737 357 190 10 7 355 60 406 8.44e-86 265
Msa0392420 MtrunA17_Chr3g0085881 41.265 332 182 7 26 354 31 352 8.40e-85 260
Msa0392420 MtrunA17_Chr2g0284951 41.274 361 189 9 6 354 5 354 2.33e-83 257
Msa0392420 MtrunA17_Chr4g0068441 40.113 354 203 7 8 354 16 367 5.57e-83 256
Msa0392420 MtrunA17_Chr8g0374101 40.108 369 195 8 10 355 11 376 2.78e-81 252
Msa0392420 MtrunA17_Chr2g0284921 41.716 338 181 9 26 355 32 361 3.33e-81 251
Msa0392420 MtrunA17_Chr2g0285001 40.503 358 194 11 9 354 10 360 1.33e-80 251
Msa0392420 MtrunA17_Chr7g0275011 37.110 353 216 6 9 355 14 366 1.80e-77 242
Msa0392420 MtrunA17_Chr2g0284941 39.889 361 178 10 6 354 5 338 2.42e-77 241
Msa0392420 MtrunA17_Chr5g0444401 37.784 352 206 5 11 352 11 359 1.51e-75 237
Msa0392420 MtrunA17_Chr3g0092131 39.157 332 196 5 8 333 2 333 1.60e-75 237
Msa0392420 MtrunA17_Chr3g0085231 39.093 353 192 10 10 354 12 349 1.74e-75 236
Msa0392420 MtrunA17_Chr7g0275021 36.011 361 220 7 1 355 11 366 2.99e-75 236
Msa0392420 MtrunA17_Chr7g0275001 37.126 334 204 5 28 355 25 358 2.28e-74 234
Msa0392420 MtrunA17_Chr3g0099161 39.943 353 187 8 19 355 83 426 2.81e-74 236
Msa0392420 MtrunA17_Chr1g0182811 37.853 354 208 7 6 352 16 364 5.46e-74 233
Msa0392420 MtrunA17_Chr1g0189901 36.182 351 219 5 7 352 10 360 9.49e-74 233
Msa0392420 MtrunA17_Chr5g0396511 36.667 330 203 4 30 353 48 377 1.18e-73 233
Msa0392420 MtrunA17_Chr4g0060811 39.806 309 181 3 30 333 29 337 1.28e-73 232
Msa0392420 MtrunA17_Chr1g0189931 35.821 335 210 5 23 352 27 361 9.57e-73 230
Msa0392420 MtrunA17_Chr3g0099151 38.395 349 199 8 19 355 78 422 2.28e-71 228
Msa0392420 MtrunA17_Chr7g0274991 35.775 355 223 5 6 355 11 365 5.44e-71 226
Msa0392420 MtrunA17_Chr3g0099231 33.791 364 229 5 1 355 1 361 3.46e-70 224
Msa0392420 MtrunA17_Chr6g0457921 35.393 356 220 6 10 355 7 362 1.05e-69 222
Msa0392420 MtrunA17_Chr4g0008851 35.593 354 221 6 6 352 10 363 2.35e-69 221
Msa0392420 MtrunA17_Chr7g0215961 35.475 358 207 7 8 355 9 352 3.95e-68 218
Msa0392420 MtrunA17_Chr1g0189891 35.714 364 217 8 1 355 1 356 3.17e-66 213
Msa0392420 MtrunA17_Chr1g0156931 37.540 309 182 7 25 326 38 342 1.61e-64 209
Msa0392420 MtrunA17_Chr5g0438621 34.808 339 204 10 6 333 8 340 3.85e-63 205
Msa0392420 MtrunA17_Chr4g0027521 36.152 343 193 10 7 333 8 340 9.77e-63 204
Msa0392420 MtrunA17_Chr3g0105401 34.503 342 212 9 1 333 1 339 4.63e-61 199
Msa0392420 MtrunA17_Chr3g0142921 36.246 309 188 7 27 328 35 341 1.68e-60 198
Msa0392420 MtrunA17_Chr1g0156911 37.013 308 186 6 27 328 36 341 9.30e-60 196
Msa0392420 MtrunA17_Chr2g0301641 36.391 338 196 8 28 352 43 374 2.43e-59 196
Msa0392420 MtrunA17_Chr1g0156921 34.347 329 206 6 9 328 20 347 2.91e-59 195
Msa0392420 MtrunA17_Chr5g0438631 34.328 335 206 9 6 329 4 335 4.57e-58 191
Msa0392420 MtrunA17_Chr3g0142941 35.783 313 185 8 26 328 45 351 5.03e-58 192
Msa0392420 MtrunA17_Chr1g0156901 36.170 329 199 7 9 328 28 354 5.41e-58 192
Msa0392420 MtrunA17_Chr2g0320671 35.650 331 203 8 11 333 12 340 2.32e-57 190
Msa0392420 MtrunA17_Chr5g0420811 32.258 341 208 9 7 337 9 336 1.67e-56 187
Msa0392420 MtrunA17_Chr8g0371491 35.938 320 187 10 24 331 32 345 3.09e-56 187
Msa0392420 MtrunA17_Chr8g0344941 34.018 341 204 8 5 328 11 347 1.23e-55 186
Msa0392420 MtrunA17_Chr1g0156891 35.783 313 188 8 25 328 40 348 1.59e-55 185
Msa0392420 MtrunA17_Chr8g0341001 34.328 335 208 9 9 333 11 343 2.43e-55 184
Msa0392420 MtrunA17_Chr3g0120861 33.754 317 199 8 21 329 31 344 1.31e-54 183
Msa0392420 MtrunA17_Chr5g0405821 34.756 328 195 10 24 338 39 360 3.35e-54 182
Msa0392420 MtrunA17_Chr8g0344931 34.535 333 205 5 28 355 37 361 4.00e-54 182
Msa0392420 MtrunA17_Chr8g0370951 32.884 371 228 9 1 354 1 367 1.30e-52 178
Msa0392420 MtrunA17_Chr2g0330781 34.810 316 196 8 26 333 29 342 1.62e-52 177
Msa0392420 MtrunA17_Chr5g0405831 33.125 320 197 9 24 331 39 353 3.52e-52 177
Msa0392420 MtrunA17_Chr5g0438641 33.531 337 202 10 11 334 16 343 8.89e-52 175
Msa0392420 MtrunA17_Chr2g0283191 31.025 361 215 12 9 344 16 367 1.99e-50 172
Msa0392420 MtrunA17_Chr5g0432101 31.546 317 204 8 28 334 33 346 2.83e-49 169
Msa0392420 MtrunA17_Chr8g0349341 30.601 366 230 7 4 354 8 364 3.13e-48 166
Msa0392420 MtrunA17_Chr8g0371471 31.928 332 210 10 24 344 37 363 4.35e-47 163
Msa0392420 MtrunA17_Chr6g0459921 35.391 243 150 7 118 355 121 361 6.74e-47 162
Msa0392420 MtrunA17_Chr8g0371481 31.515 330 215 8 24 344 37 364 2.81e-46 161
Msa0392420 MtrunA17_Chr8g0370981 29.921 381 213 8 24 353 40 417 4.97e-46 162
Msa0392420 MtrunA17_Chr8g0349321 29.363 361 236 5 4 354 13 364 1.91e-45 159
Msa0392420 MtrunA17_Chr4g0046151 30.000 340 218 10 4 326 10 346 1.42e-44 157
Msa0392420 MtrunA17_Chr6g0455661 33.735 249 155 7 111 355 230 472 2.39e-44 159
Msa0392420 MtrunA17_Chr6g0455661 54.902 102 46 0 16 117 19 120 5.74e-28 114
Msa0392420 MtrunA17_Chr8g0349331 29.745 353 199 6 12 354 19 332 1.70e-42 150
Msa0392420 MtrunA17_Chr5g0437421 30.435 322 206 8 19 326 23 340 3.38e-41 147
Msa0392420 MtrunA17_Chr1g0157001 32.450 302 191 6 33 326 41 337 5.36e-41 147
Msa0392420 MtrunA17_Chr8g0349301 32.384 281 175 5 28 303 37 307 2.07e-39 142
Msa0392420 MtrunA17_Chr8g0370961 32.035 231 151 3 125 353 17 243 1.23e-36 132
Msa0392420 MtrunA17_Chr1g0160101 29.086 361 213 10 3 329 13 364 1.84e-33 127
Msa0392420 MtrunA17_Chr4g0027571 31.132 212 141 4 128 335 3 213 2.82e-31 118
Msa0392420 MtrunA17_Chr6g0450721 27.300 337 211 9 27 346 32 351 1.84e-30 119
Msa0392420 MtrunA17_Chr5g0440501 27.917 240 163 2 125 354 11 250 2.46e-30 116
Msa0392420 MtrunA17_Chr7g0275291 26.027 365 223 10 9 340 13 363 8.85e-30 117
Msa0392420 MtrunA17_Chr7g0226911 24.931 361 229 7 28 355 35 386 1.04e-29 117
Msa0392420 MtrunA17_Chr7g0254461 28.767 365 211 14 14 340 26 379 1.78e-28 114
Msa0392420 MtrunA17_Chr1g0160011 28.333 360 212 12 6 332 16 362 2.10e-28 114
Msa0392420 MtrunA17_Chr6g0450731 27.108 332 210 9 27 340 32 349 2.63e-28 113
Msa0392420 MtrunA17_Chr1g0160031 28.954 373 223 13 1 339 4 368 3.48e-28 113
Msa0392420 MtrunA17_Chr6g0450701 27.147 361 223 11 9 340 17 366 7.42e-28 112
Msa0392420 MtrunA17_Chr8g0347751 26.613 372 234 10 1 340 6 370 1.49e-27 111
Msa0392420 MtrunA17_Chr8g0381581 27.322 366 227 11 6 339 16 374 2.44e-27 111
Msa0392420 MtrunA17_Chr1g0159981 28.084 381 233 13 1 348 15 387 2.56e-27 111
Msa0392420 MtrunA17_Chr3g0104821 27.108 332 210 10 28 334 44 368 2.88e-27 110
Msa0392420 MtrunA17_Chr7g0229591 38.150 173 101 5 26 194 28 198 5.23e-27 106
Msa0392420 MtrunA17_Chr2g0283481 27.368 380 236 14 3 355 19 385 7.41e-27 109
Msa0392420 MtrunA17_Chr8g0352901 27.405 343 211 9 27 340 27 360 1.02e-26 108
Msa0392420 MtrunA17_Chr7g0226931 25.490 357 214 7 28 340 38 386 1.35e-26 109
Msa0392420 MtrunA17_Chr6g0450711 27.035 344 206 9 27 340 121 449 5.32e-26 108
Msa0392420 MtrunA17_Chr1g0159971 27.273 363 223 12 4 332 16 371 7.65e-26 107
Msa0392420 MtrunA17_Chr2g0284931 28.448 232 138 7 128 355 13 220 9.56e-26 103
Msa0392420 MtrunA17_Chr1g0178931 28.228 333 201 13 29 345 38 348 2.82e-25 104
Msa0392420 MtrunA17_Chr2g0283501 28.045 353 227 10 9 339 13 360 1.01e-24 103
Msa0392420 MtrunA17_Chr2g0301581 26.608 342 208 11 10 328 14 335 1.37e-24 102
Msa0392420 MtrunA17_Chr3g0112821 25.893 336 223 10 28 346 30 356 2.04e-24 102
Msa0392420 MtrunA17_Chr1g0159991 27.174 368 224 11 6 339 10 367 2.54e-24 102
Msa0392420 MtrunA17_Chr2g0317261 27.607 326 201 10 28 334 30 339 3.70e-24 101
Msa0392420 MtrunA17_Chr2g0301541 26.608 342 208 11 10 328 14 335 3.94e-24 101
Msa0392420 MtrunA17_Chr3g0093031 26.724 348 210 13 28 346 30 361 5.50e-24 101
Msa0392420 MtrunA17_Chr7g0229581 33.108 148 96 2 201 345 8 155 8.00e-24 96.3
Msa0392420 MtrunA17_Chr2g0317271 27.607 326 201 11 28 334 30 339 1.12e-23 100
Msa0392420 MtrunA17_Chr4g0057991 24.302 358 234 9 10 340 16 363 1.48e-23 100
Msa0392420 MtrunA17_Chr1g0198351 25.926 324 200 10 19 326 34 333 2.21e-23 99.4
Msa0392420 MtrunA17_Chr0c01g0489581 26.912 353 218 13 6 334 3 339 2.23e-23 99.4
Msa0392420 MtrunA17_Chr1g0178941 25.472 318 202 9 28 327 40 340 5.04e-23 98.6
Msa0392420 MtrunA17_Chr0c01g0489571 26.912 353 218 13 6 334 3 339 6.90e-23 98.2
Msa0392420 MtrunA17_Chr7g0226941 26.087 368 230 11 12 347 17 374 1.15e-22 97.8
Msa0392420 MtrunA17_Chr2g0283511 27.221 349 215 13 33 355 36 371 4.13e-22 96.3
Msa0392420 MtrunA17_Chr7g0271551 26.380 326 204 11 28 333 36 345 1.12e-21 94.7
Msa0392420 MtrunA17_Chr6g0469511 46.903 113 55 4 26 134 28 139 1.43e-21 89.4
Msa0392420 MtrunA17_Chr2g0321991 42.342 111 57 3 7 110 9 119 4.58e-21 87.8
Msa0392420 MtrunA17_Chr8g0339251 28.777 278 174 10 27 293 27 291 8.99e-21 91.7
Msa0392420 MtrunA17_Chr7g0273101 26.377 345 217 8 25 340 26 362 2.79e-20 90.9
Msa0392420 MtrunA17_Chr1g0189921 47.664 107 53 2 23 126 26 132 3.87e-20 85.9
Msa0392420 MtrunA17_Chr7g0266061 25.552 317 200 13 26 327 40 335 5.23e-20 89.7
Msa0392420 MtrunA17_Chr4g0027561 46.535 101 50 3 26 122 28 128 1.03e-19 84.7
Msa0392420 MtrunA17_Chr1g0189911 27.465 142 101 1 213 352 2 143 5.05e-19 82.8
Msa0392420 MtrunA17_Chr1g0198381 26.556 241 156 5 29 267 3 224 6.09e-19 86.3
Msa0392420 MtrunA17_Chr3g0096551 25.284 352 212 13 28 340 29 368 5.97e-18 84.3
Msa0392420 MtrunA17_Chr7g0228261 35.955 89 57 0 267 355 4 92 2.27e-17 76.6
Msa0392420 MtrunA17_Chr3g0112691 26.225 347 211 14 28 346 30 359 2.31e-17 82.4
Msa0392420 MtrunA17_Chr2g0308201 45.882 85 40 1 3 81 4 88 2.84e-17 76.3
Msa0392420 MtrunA17_Chr2g0301591 26.460 291 161 10 10 273 14 278 4.08e-17 80.5
Msa0392420 MtrunA17_Chr2g0285041 36.283 113 69 3 86 195 7 119 8.12e-17 76.6
Msa0392420 MtrunA17_Chr1g0191461 24.011 354 225 10 8 329 11 352 1.52e-16 80.1
Msa0392420 MtrunA17_Chr8g0370971 45.000 100 47 2 27 118 37 136 6.04e-15 72.0
Msa0392420 MtrunA17_Chr4g0018571 33.113 151 97 3 189 335 19 169 6.32e-15 72.0
Msa0392420 MtrunA17_Chr2g0283531 26.301 365 234 12 3 339 2 359 9.63e-15 74.7
Msa0392420 MtrunA17_Chr2g0285051 52.000 75 36 0 17 91 25 99 1.70e-14 69.3
Msa0392420 MtrunA17_Chr2g0301551 25.368 272 164 10 78 328 38 291 2.10e-14 73.2
Msa0392420 MtrunA17_Chr2g0301571 25.092 271 164 10 78 327 38 290 1.45e-13 70.9
Msa0392420 MtrunA17_Chr2g0285031 43.243 74 37 2 283 354 7 77 6.69e-13 63.5
Msa0392420 MtrunA17_Chr6g0469521 28.125 128 89 2 194 318 25 152 8.71e-13 65.5
Msa0392420 MtrunA17_Chr3g0104801 42.045 88 49 1 28 113 44 131 1.29e-12 65.9
Msa0392420 MtrunA17_Chr4g0018561 61.538 52 19 1 26 76 28 79 1.78e-12 63.2
Msa0392420 MtrunA17_Chr2g0308221 27.211 147 67 3 236 354 1 135 4.44e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392420 AT1G71691.2 69.789 331 99 1 26 355 53 383 6.00e-176 494
Msa0392420 AT1G71691.1 66.667 279 92 1 78 355 4 282 3.47e-142 404
Msa0392420 AT1G71691.3 70.270 259 76 1 26 283 53 311 2.97e-130 375
Msa0392420 AT1G29670.1 50.556 360 172 6 1 355 5 363 6.25e-125 363
Msa0392420 AT1G29670.2 50.556 360 172 6 1 355 73 431 2.20e-124 365
Msa0392420 AT5G45670.1 51.821 357 159 6 12 355 6 362 2.33e-120 352
Msa0392420 AT1G29660.1 49.030 361 177 6 1 355 5 364 2.80e-119 349
Msa0392420 AT4G18970.1 50.893 336 159 5 26 355 26 361 1.92e-115 339
Msa0392420 AT4G18970.2 50.893 336 159 5 26 355 26 361 3.76e-114 338
Msa0392420 AT1G33811.1 48.824 340 163 6 26 355 32 370 6.27e-114 336
Msa0392420 AT1G71250.1 48.094 341 171 4 21 355 33 373 9.19e-111 328
Msa0392420 AT5G08460.1 47.207 358 177 7 10 355 28 385 1.74e-109 325
Msa0392420 AT5G15720.1 49.112 338 163 5 26 355 28 364 2.93e-109 324
Msa0392420 AT2G19060.1 41.369 336 170 9 15 339 17 336 9.75e-84 258
Msa0392420 AT5G15720.3 45.455 286 148 4 78 355 48 333 6.25e-83 255
Msa0392420 AT2G19010.1 40.057 352 190 9 10 354 10 347 8.14e-83 256
Msa0392420 AT2G19010.2 40.057 352 190 9 10 354 40 377 4.96e-82 254
Msa0392420 AT2G19050.1 37.741 363 192 10 9 355 5 349 4.20e-79 246
Msa0392420 AT4G10950.2 37.237 333 203 4 26 352 69 401 1.22e-78 247
Msa0392420 AT5G37690.1 40.299 335 191 5 11 337 6 339 1.16e-77 243
Msa0392420 AT5G15720.2 48.872 266 127 5 26 283 28 292 4.48e-77 239
Msa0392420 AT2G23540.1 37.027 370 208 8 9 355 20 387 9.96e-77 241
Msa0392420 AT4G10950.1 36.937 333 200 5 26 352 69 397 1.09e-75 239
Msa0392420 AT4G30140.1 42.216 334 174 9 23 352 28 346 1.57e-75 237
Msa0392420 AT5G33370.1 35.362 345 218 4 13 352 15 359 1.16e-74 235
Msa0392420 AT1G74460.1 39.053 338 193 6 11 337 7 342 2.73e-74 234
Msa0392420 AT3G50400.1 36.631 374 210 9 7 355 3 374 5.75e-74 234
Msa0392420 AT5G37690.2 39.466 337 183 7 11 337 6 331 1.05e-72 229
Msa0392420 AT5G41890.1 38.968 349 184 9 30 355 33 375 1.37e-72 230
Msa0392420 AT3G04290.1 36.391 327 203 4 28 349 29 355 1.70e-70 224
Msa0392420 AT4G28780.1 36.637 333 206 4 28 355 31 363 1.87e-70 224
Msa0392420 AT5G18430.1 37.069 348 209 6 9 349 12 356 3.48e-70 224
Msa0392420 AT2G19050.2 41.264 269 142 6 9 267 5 267 2.56e-65 208
Msa0392420 AT5G55050.1 35.920 348 205 9 20 352 29 373 3.37e-63 206
Msa0392420 AT2G04570.1 34.493 345 209 11 6 338 4 343 1.44e-59 196
Msa0392420 AT1G75890.2 35.185 324 198 9 24 338 43 363 1.03e-57 191
Msa0392420 AT3G53100.1 37.609 343 200 9 1 333 1 339 1.17e-57 191
Msa0392420 AT1G75890.3 35.185 324 198 9 24 338 72 392 2.07e-57 191
Msa0392420 AT2G03980.2 34.969 326 195 8 23 338 38 356 9.56e-57 189
Msa0392420 AT2G03980.3 34.969 326 195 8 23 338 38 356 9.56e-57 189
Msa0392420 AT2G03980.1 34.969 326 195 8 23 338 38 356 9.56e-57 189
Msa0392420 AT2G03980.4 34.969 326 195 8 23 338 38 356 9.56e-57 189
Msa0392420 AT1G75880.1 35.625 320 195 8 25 335 49 366 1.45e-56 189
Msa0392420 AT5G22810.1 35.849 318 192 8 26 333 32 347 1.62e-56 188
Msa0392420 AT5G45950.1 33.436 326 210 6 14 336 26 347 4.47e-56 187
Msa0392420 AT2G42990.1 32.676 355 224 9 1 345 1 350 6.36e-56 186
Msa0392420 AT5G63170.1 38.066 331 179 12 6 326 5 319 1.14e-55 185
Msa0392420 AT1G75890.1 33.929 336 199 9 24 338 43 376 1.85e-55 186
Msa0392420 AT5G42170.1 34.347 329 199 9 26 344 48 369 1.98e-55 186
Msa0392420 AT1G75880.2 35.312 320 195 9 25 335 49 365 6.50e-55 184
Msa0392420 AT4G26790.1 33.436 326 194 9 22 333 23 339 8.41e-55 183
Msa0392420 AT4G26790.2 33.436 326 194 9 22 333 23 339 8.41e-55 183
Msa0392420 AT5G03810.1 35.503 338 200 9 8 329 2 337 1.27e-54 183
Msa0392420 AT5G03820.1 35.103 339 201 8 8 329 5 341 1.42e-54 183
Msa0392420 AT5G03820.2 35.103 339 201 8 8 329 33 369 3.65e-54 183
Msa0392420 AT4G16230.1 46.429 224 108 5 9 221 5 227 7.05e-54 178
Msa0392420 AT1G73610.1 35.922 309 178 9 24 326 31 325 4.90e-53 179
Msa0392420 AT5G33370.2 35.870 276 172 4 13 283 15 290 6.81e-53 178
Msa0392420 AT1G75900.1 30.484 351 222 9 8 342 17 361 6.99e-52 176
Msa0392420 AT3G14225.1 33.333 345 215 6 25 355 34 377 1.29e-51 176
Msa0392420 AT3G14225.2 32.044 362 221 7 11 355 20 373 2.43e-51 175
Msa0392420 AT1G23500.1 35.714 336 186 11 1 326 11 326 2.56e-51 174
Msa0392420 AT1G20120.1 32.609 322 203 9 27 338 77 394 3.75e-51 175
Msa0392420 AT1G20132.1 33.746 323 203 8 24 338 57 376 4.70e-51 174
Msa0392420 AT1G53920.1 31.367 373 227 9 7 355 17 384 9.69e-50 171
Msa0392420 AT1G53940.2 34.104 346 207 8 25 355 36 375 1.35e-49 171
Msa0392420 AT1G59406.1 33.739 329 197 11 11 326 10 330 1.68e-49 169
Msa0392420 AT1G59030.1 33.739 329 197 11 11 326 10 330 1.68e-49 169
Msa0392420 AT1G58725.1 33.739 329 197 11 11 326 10 330 1.68e-49 169
Msa0392420 AT5G40990.1 33.913 345 209 7 25 355 34 373 2.20e-49 170
Msa0392420 AT3G14820.1 33.125 320 198 10 25 335 29 341 3.58e-49 169
Msa0392420 AT2G30310.1 32.317 328 209 9 10 327 16 340 7.93e-49 168
Msa0392420 AT1G71120.1 32.659 346 209 9 20 353 23 356 4.77e-48 166
Msa0392420 AT2G30220.1 33.123 317 199 9 27 333 32 345 1.59e-47 164
Msa0392420 AT3G16370.1 33.750 320 200 9 23 333 25 341 3.05e-47 164
Msa0392420 AT2G31540.1 32.416 327 210 8 18 335 25 349 7.21e-47 163
Msa0392420 AT1G06990.1 32.000 325 206 8 21 333 27 348 7.60e-47 163
Msa0392420 AT5G45960.1 30.745 322 210 8 24 334 43 362 2.31e-46 162
Msa0392420 AT1G58430.1 32.710 321 203 9 18 328 25 342 3.19e-46 161
Msa0392420 AT1G20135.1 31.804 327 202 9 8 326 7 320 9.23e-46 159
Msa0392420 AT1G75920.2 31.861 317 193 9 20 326 21 324 2.71e-45 158
Msa0392420 AT2G40250.1 28.923 325 216 6 26 338 34 355 1.55e-44 157
Msa0392420 AT2G24560.1 30.696 316 208 8 27 333 33 346 3.32e-43 153
Msa0392420 AT1G20130.2 31.132 318 201 8 24 326 180 494 7.08e-43 155
Msa0392420 AT1G20130.1 31.132 318 201 8 24 326 200 514 1.00e-42 155
Msa0392420 AT1G58520.3 31.833 311 187 10 26 326 28 323 4.72e-42 150
Msa0392420 AT1G58525.1 31.833 311 187 10 26 326 28 323 4.72e-42 150
Msa0392420 AT1G75920.1 30.422 332 193 10 20 326 16 334 1.74e-41 149
Msa0392420 AT1G53990.1 30.811 370 220 11 9 355 8 364 3.88e-41 148
Msa0392420 AT3G43570.1 31.024 332 189 11 3 326 2 301 1.91e-40 145
Msa0392420 AT1G75930.1 31.098 328 200 13 11 326 11 324 6.30e-39 142
Msa0392420 AT1G75910.1 29.819 332 211 9 7 326 3 324 1.05e-38 141
Msa0392420 AT2G04020.1 38.158 228 128 6 6 227 21 241 9.28e-38 136
Msa0392420 AT2G04020.2 38.158 228 128 6 6 227 21 241 3.11e-37 136
Msa0392420 AT1G75920.3 28.662 314 176 8 20 326 21 293 2.36e-35 131
Msa0392420 AT3G43550.1 32.302 291 181 9 3 283 2 286 2.52e-35 130
Msa0392420 AT1G53940.1 34.701 268 160 7 25 283 36 297 3.17e-35 130
Msa0392420 AT1G54010.1 28.652 356 227 12 9 352 14 354 1.88e-34 130
Msa0392420 AT1G75920.4 29.831 295 184 9 42 326 15 296 3.14e-34 128
Msa0392420 AT1G54000.1 27.500 360 234 11 6 352 9 354 1.44e-33 128
Msa0392420 AT1G54030.1 27.795 331 215 11 29 355 53 363 1.83e-33 128
Msa0392420 AT1G54020.2 27.859 341 219 12 21 352 24 346 2.78e-33 127
Msa0392420 AT2G27360.1 28.286 350 224 9 13 339 18 363 1.05e-31 123
Msa0392420 AT4G16233.1 44.444 126 69 1 231 355 5 130 1.20e-31 116
Msa0392420 AT1G28570.1 28.448 348 203 13 24 339 30 363 1.21e-31 123
Msa0392420 AT3G14220.1 29.674 337 209 14 27 352 31 350 3.58e-31 121
Msa0392420 AT1G31550.2 27.701 361 222 10 1 333 9 358 5.75e-31 121
Msa0392420 AT1G28640.1 28.756 386 195 17 6 340 9 365 2.26e-30 119
Msa0392420 AT1G31550.1 27.624 362 218 10 1 333 9 355 7.36e-30 118
Msa0392420 AT1G28650.1 27.374 358 224 9 9 339 18 366 9.30e-30 118
Msa0392420 AT1G28660.1 27.548 363 227 9 6 339 9 364 1.34e-29 117
Msa0392420 AT1G28580.1 27.855 359 223 12 9 339 16 366 1.81e-29 117
Msa0392420 AT1G28670.1 28.022 364 225 10 6 339 9 365 3.99e-29 116
Msa0392420 AT1G67830.1 28.235 340 203 12 25 332 27 357 4.52e-28 113
Msa0392420 AT2G24560.2 29.368 269 179 8 27 286 33 299 6.01e-28 111
Msa0392420 AT1G28660.2 27.548 363 226 10 6 339 9 363 6.31e-28 112
Msa0392420 AT1G28600.1 26.016 369 233 11 1 339 1 359 1.95e-27 111
Msa0392420 AT3G48460.1 25.474 369 216 13 12 340 15 364 4.64e-27 110
Msa0392420 AT1G28610.2 26.479 355 219 13 1 327 7 347 3.82e-26 108
Msa0392420 AT2G31550.1 28.641 206 142 3 132 333 2 206 4.74e-26 104
Msa0392420 AT3G14210.1 26.781 351 215 14 22 352 28 356 5.64e-26 107
Msa0392420 AT3G27950.1 26.053 380 243 10 5 355 2 372 6.90e-26 107
Msa0392420 AT4G01130.1 24.457 368 235 9 10 343 13 371 8.95e-26 107
Msa0392420 AT5G03610.1 29.260 311 191 13 29 326 44 338 2.52e-25 105
Msa0392420 AT5G14450.1 26.287 369 227 10 7 339 14 373 5.50e-25 104
Msa0392420 AT1G28590.1 25.967 362 218 14 12 339 20 365 1.50e-24 103
Msa0392420 AT3G26430.1 28.955 335 201 11 25 329 28 355 9.77e-24 101
Msa0392420 AT5G03600.1 26.582 316 195 10 24 326 10 301 1.32e-22 97.1
Msa0392420 AT5G03600.2 26.582 316 195 10 24 326 45 336 1.36e-22 97.8
Msa0392420 AT4G16220.1 49.558 113 52 4 8 116 9 120 1.43e-22 95.5
Msa0392420 AT1G54030.2 27.413 259 166 9 29 283 53 293 3.92e-22 95.5
Msa0392420 AT3G05180.1 26.149 348 214 11 25 340 33 369 1.71e-21 94.7
Msa0392420 AT3G09930.2 26.183 317 194 10 29 326 40 335 3.05e-20 90.9
Msa0392420 AT3G09930.1 26.183 317 194 10 29 326 40 335 3.05e-20 90.9
Msa0392420 AT1G56670.1 25.352 355 224 11 4 333 14 352 1.38e-19 89.4
Msa0392420 AT4G01130.2 25.085 295 191 8 10 283 13 298 2.97e-19 87.8
Msa0392420 AT1G54020.1 24.910 277 185 9 82 352 1 260 6.40e-19 86.3
Msa0392420 AT1G54020.5 24.910 277 185 9 82 352 1 260 6.40e-19 86.3
Msa0392420 AT1G54020.3 24.910 277 185 9 82 352 1 260 6.40e-19 86.3
Msa0392420 AT3G62280.1 24.484 339 219 10 27 341 35 360 1.45e-18 86.3
Msa0392420 AT1G54790.3 24.638 345 219 11 27 340 31 365 2.51e-17 82.8
Msa0392420 AT1G09390.1 24.363 353 216 12 11 333 18 349 2.51e-17 82.8
Msa0392420 AT1G28580.2 25.086 291 187 10 72 339 3 285 9.31e-17 80.5
Msa0392420 AT1G54020.4 24.878 205 147 4 152 352 10 211 5.82e-16 77.0
Msa0392420 AT4G01130.3 21.993 291 190 8 84 343 1 285 4.06e-15 75.5
Msa0392420 AT1G54790.1 22.826 368 239 11 8 340 7 364 5.15e-15 75.9
Msa0392420 AT1G28610.1 33.113 151 89 4 1 142 7 154 6.30e-15 73.9
Msa0392420 AT1G28600.2 27.962 211 134 7 1 199 1 205 2.46e-14 72.0
Msa0392420 AT3G14210.2 25.641 234 151 8 135 352 2 228 3.57e-14 72.0
Msa0392420 AT2G36325.1 25.879 313 193 14 28 323 47 337 8.86e-13 68.9
Msa0392420 AT1G56670.2 24.667 300 190 9 4 283 14 297 1.34e-11 65.1
Msa0392420 AT1G53970.2 48.571 70 32 2 21 88 15 82 3.88e-11 59.7
Msa0392420 AT1G53970.1 48.571 70 32 2 21 88 15 82 3.88e-11 59.7

Find 86 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCCATTGTACTGATTTC+TGG 0.105484 3_2:+5542732 None:intergenic
AACACATAACGGTTTCTATT+AGG 0.156071 3_2:+5540693 None:intergenic
TGACAGTTCCCGCATGTTTC+AGG 0.200489 3_2:-5542187 Msa0392420:CDS
TCCATTGTATGCAGGAATTA+AGG 0.200828 3_2:+5543527 None:intergenic
ATAGAAACCGTTATGTGTTT+TGG 0.234977 3_2:-5540689 Msa0392420:CDS
TGAACATGGCAGGAACATTT+TGG 0.236523 3_2:+5545263 None:intergenic
TGATTTCTGGTGTTATAATT+AGG 0.237352 3_2:+5542745 None:intergenic
AGAAGCAGTTAACATTCTTA+TGG 0.245755 3_2:-5540649 Msa0392420:CDS
AATCAACTTACTGGAAATAT+TGG 0.248422 3_2:-5542853 Msa0392420:CDS
GTTCCTGCCATGTTCATATT+TGG 0.257412 3_2:-5545256 Msa0392420:CDS
TTCTATTAGGGCATGGAGTT+TGG 0.264599 3_2:+5540706 None:intergenic
AAATTTGTGATTGCTGGATT+AGG 0.286484 3_2:-5542363 Msa0392420:CDS
GGTGACTCACTTATTGATAA+TGG 0.288022 3_2:-5545235 Msa0392420:CDS
ACACATAACGGTTTCTATTA+GGG 0.291204 3_2:+5540694 None:intergenic
TCATAGAGGCTTTACAATCT+TGG 0.298958 3_2:-5542393 Msa0392420:intron
GTTGATAGGATAAACAAAAT+TGG 0.302716 3_2:+5540602 None:intergenic
TGGAGTATCTCAAATATTCT+TGG 0.322971 3_2:-5545320 Msa0392420:CDS
AATTTGTGATTGCTGGATTA+GGG 0.341456 3_2:-5542362 Msa0392420:CDS
TAGGCATAAGGTAGTTGTTT+AGG 0.350426 3_2:+5542764 None:intergenic
GCAAGGAAATTTGTGATTGC+TGG 0.351908 3_2:-5542369 Msa0392420:CDS
GAAGCAGTTAACATTCTTAT+GGG 0.360735 3_2:-5540648 Msa0392420:CDS
AACTTGTTGATGGCTAAGTT+TGG 0.363571 3_2:-5545340 Msa0392420:exon
GATTGCTGGATTAGGGCTAT+TGG 0.366814 3_2:-5542355 Msa0392420:CDS
AATACATTGAATCAACTTAC+TGG 0.367293 3_2:-5542862 Msa0392420:CDS
AAATATTGGAGCAGATAATA+TGG 0.380686 3_2:-5542839 Msa0392420:CDS
AATAGAGGGTGTTGTGGCCT+TGG 0.400540 3_2:-5540762 Msa0392420:CDS
CCATATGGTATTGACTTCAA+TGG 0.404544 3_2:-5545169 Msa0392420:CDS
AGAACTTAGAAACTTGTTGA+TGG 0.405568 3_2:-5545350 None:intergenic
TGCATATTCTTTGTTGGAAT+GGG 0.406897 3_2:-5542799 Msa0392420:CDS
AATATTCTTGGTGCTTATCA+TGG 0.407270 3_2:-5545308 Msa0392420:CDS
TCAAGGTGCATATTCTTTGT+TGG 0.407331 3_2:-5542805 Msa0392420:CDS
TTTCTAAGTTGTTCATCAAA+TGG 0.410995 3_2:+5542892 None:intergenic
ATTGCTGGATTAGGGCTATT+GGG 0.411186 3_2:-5542354 Msa0392420:CDS
GTGCATATTCTTTGTTGGAA+TGG 0.415630 3_2:-5542800 Msa0392420:CDS
AACTATGCTTCAGCTGCTGC+TGG 0.416729 3_2:-5543474 Msa0392420:CDS
ACTGTCAATGAATATGAATC+TGG 0.420747 3_2:+5542203 None:intergenic
CCATTGTATGCAGGAATTAA+GGG 0.432472 3_2:+5543528 None:intergenic
TGGTGTTATAATTAGGCATA+AGG 0.444978 3_2:+5542752 None:intergenic
TACACTATTGTTGATGAGAT+AGG 0.446947 3_2:-5545118 Msa0392420:intron
CCGACTGGTCGCTTCTCAAA+TGG 0.461318 3_2:-5545142 Msa0392420:CDS
ACAGGGGATCAAATGCTTCA+TGG 0.465834 3_2:-5543501 Msa0392420:CDS
TTTGACCTCTGTTTCTTCCA+AGG 0.467001 3_2:+5540745 None:intergenic
GACTTCAATGGTGGACCGAC+TGG 0.471274 3_2:-5545157 Msa0392420:CDS
GTGCTTATCATGGTCTTAAG+TGG 0.474885 3_2:-5545298 Msa0392420:CDS
GCAAGTTGCTGAATGTTGAT+AGG 0.475041 3_2:+5540588 None:intergenic
CCATTGAAGTCAATACCATA+TGG 0.485315 3_2:+5545169 None:intergenic
GTCTTAAGTGGTGCAGTCAC+AGG 0.491965 3_2:-5545286 Msa0392420:CDS
GTACTTTGAGACAATATGCT+TGG 0.495491 3_2:+5542324 None:intergenic
AGTTTCTTCCTGTGTCATCA+AGG 0.499279 3_2:+5543448 None:intergenic
CCCTTAATTCCTGCATACAA+TGG 0.500965 3_2:-5543528 Msa0392420:CDS
ATTAATGCAGCTGAACTGCT+TGG 0.518858 3_2:-5543555 Msa0392420:intron
AAAATCTTACAGTGAGTTGG+TGG 0.521224 3_2:+5542677 None:intergenic
TAACATTCTTATGGGAAGGA+TGG 0.522951 3_2:-5540640 Msa0392420:CDS
AGAATGTTAACTGCTTCTGT+TGG 0.524513 3_2:+5540654 None:intergenic
ACAACAGTATGCTGATCTCT+TGG 0.527275 3_2:-5542713 Msa0392420:CDS
CCTGCATACAATGGAGCCAC+AGG 0.527292 3_2:-5543519 Msa0392420:CDS
GGCTTTACAATCTTGGAGCA+AGG 0.555445 3_2:-5542386 Msa0392420:CDS
GGATTTACTGATGTGAATAG+AGG 0.556382 3_2:-5540777 Msa0392420:CDS
CCTGTGGCTCCATTGTATGC+AGG 0.556576 3_2:+5543519 None:intergenic
CAGTTAACATTCTTATGGGA+AGG 0.561855 3_2:-5540644 Msa0392420:CDS
AAGAATTTCCTGAAACATGC+GGG 0.562469 3_2:+5542179 None:intergenic
ATATGGCCACACAACTATCA+AGG 0.568666 3_2:-5542822 Msa0392420:CDS
TAACGGTTTCTATTAGGGCA+TGG 0.577323 3_2:+5540699 None:intergenic
ATGCATCCCAAAACACATAA+CGG 0.580317 3_2:+5540682 None:intergenic
AAAGAATTTCCTGAAACATG+CGG 0.581975 3_2:+5542178 None:intergenic
TCACCAAATATGAACATGGC+AGG 0.584345 3_2:+5545253 None:intergenic
TTAGGGCATGGAGTTTGGAA+TGG 0.586236 3_2:+5540711 None:intergenic
ATGAATATGAATCTGGAACC+AGG 0.592151 3_2:+5542210 None:intergenic
GATTTACTGATGTGAATAGA+GGG 0.596598 3_2:-5540776 Msa0392420:CDS
ACCCTTCAATGAAAATGTGA+AGG 0.599178 3_2:-5542262 Msa0392420:CDS
TATGGTATTGACTTCAATGG+TGG 0.612409 3_2:-5545166 Msa0392420:CDS
CTGCATACAATGGAGCCACA+GGG 0.613356 3_2:-5543518 Msa0392420:CDS
ATTGTTGAGATTGCTCAACA+TGG 0.613583 3_2:+5542239 None:intergenic
GAACTATTAGAGATCAATTG+TGG 0.621512 3_2:-5540485 Msa0392420:three_prime_UTR
AACACCAGAAATCAGTACAA+TGG 0.625168 3_2:-5542736 Msa0392420:CDS
AATCTCAACAATAATCTACC+TGG 0.630593 3_2:-5542228 Msa0392420:CDS
ATGAAGCATTTGATCCCCTG+TGG 0.639449 3_2:+5543503 None:intergenic
GCTGGAATCCTTGATGACAC+AGG 0.646017 3_2:-5543456 Msa0392420:CDS
TGAGTCACCAAATATGAACA+TGG 0.664105 3_2:+5545249 None:intergenic
TAATGGTAACAATAACAACA+TGG 0.669382 3_2:-5545218 Msa0392420:CDS
CCATTTGAGAAGCGACCAGT+CGG 0.684087 3_2:+5545142 None:intergenic
TGTGGCCTTGGAAGAAACAG+AGG 0.691165 3_2:-5540750 Msa0392420:CDS
TGCATACAATGGAGCCACAG+GGG 0.692778 3_2:-5543517 Msa0392420:CDS
ATATTGTCTCAAAGTACGAG+TGG 0.701049 3_2:-5542318 Msa0392420:CDS
TATGCACCTTGATAGTTGTG+TGG 0.718978 3_2:+5542816 None:intergenic
GATGTGAATAGAGGGTGTTG+TGG 0.728907 3_2:-5540768 Msa0392420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAAATAATTTTTTATT+TGG - chr3_2:5542115-5542134 Msa0392420:intron 0.0%
!!! TTTTTTAACTTATTGTTTTT+TGG - chr3_2:5541218-5541237 Msa0392420:intron 10.0%
!!! TTACTTTAAAAAATGTTTTA+AGG - chr3_2:5541697-5541716 Msa0392420:intron 10.0%
!!! AATCTAAAGTAATTTATTTT+TGG + chr3_2:5542783-5542802 None:intergenic 10.0%
!!! ATAACTAAATTAAATTTTTG+AGG + chr3_2:5544280-5544299 None:intergenic 10.0%
!!! TAAAATTGGATTTTTATTAT+TGG - chr3_2:5544619-5544638 Msa0392420:intron 10.0%
!! AACATAAGAGATATAAATAT+TGG - chr3_2:5540887-5540906 Msa0392420:intron 15.0%
!!! TTACTCACTAATTTTTTTTA+AGG - chr3_2:5541821-5541840 Msa0392420:intron 15.0%
!!! TACTCACTAATTTTTTTTAA+GGG - chr3_2:5541822-5541841 Msa0392420:intron 15.0%
!! TATTTGCAAAAGAAAAATAT+TGG - chr3_2:5542435-5542454 Msa0392420:intron 15.0%
!! ATTTGCAAAAGAAAAATATT+GGG - chr3_2:5542436-5542455 Msa0392420:intron 15.0%
!! TATTATATTCATTAATCATC+CGG + chr3_2:5543826-5543845 None:intergenic 15.0%
!!! TAATAAAAATCCAATTTTAC+CGG + chr3_2:5544618-5544637 None:intergenic 15.0%
!! ATATTTGAAAACAATTTAGA+TGG - chr3_2:5544724-5544743 Msa0392420:intron 15.0%
!! AAATGGATACAAATAGAAAA+TGG - chr3_2:5540823-5540842 Msa0392420:intron 20.0%
!! TATCACAAACAAATTTGAAA+TGG + chr3_2:5540923-5540942 None:intergenic 20.0%
!! CAACAATTTATATTAAGAGA+AGG + chr3_2:5540970-5540989 None:intergenic 20.0%
!! TAATATAAATTGTTGTCTCA+AGG - chr3_2:5540975-5540994 Msa0392420:intron 20.0%
!!! GATTAAATTAGTGTGTTTTT+TGG - chr3_2:5541037-5541056 Msa0392420:intron 20.0%
!! CTTCAAATTAATTAAGACTT+AGG + chr3_2:5541339-5541358 None:intergenic 20.0%
!!! TTTGTTTTTTTGTTGTTGAT+TGG + chr3_2:5541594-5541613 None:intergenic 20.0%
!!! AAAATGTTTTAAGGTTTTTC+AGG - chr3_2:5541706-5541725 Msa0392420:intron 20.0%
!!! AAAATTGTAAGATTTTCATC+AGG - chr3_2:5541761-5541780 Msa0392420:intron 20.0%
!!! AAATCTTTAAGACCTTTAAA+TGG - chr3_2:5541845-5541864 Msa0392420:intron 20.0%
!! TTTGAATAGTGATTCTAAAT+AGG + chr3_2:5541883-5541902 None:intergenic 20.0%
!!! TTAAGTTTAAAATTGTGCAT+TGG - chr3_2:5541999-5542018 Msa0392420:intron 20.0%
!! ATAACCAATTAATTATTCAG+TGG + chr3_2:5542868-5542887 None:intergenic 20.0%
!! AATTTCGATAATAATTTCGA+TGG - chr3_2:5543779-5543798 Msa0392420:intron 20.0%
!! TTATGTTTAAACGCAAATTA+TGG - chr3_2:5543905-5543924 Msa0392420:intron 20.0%
!! AACAACAAAAAAAGTTGTAT+CGG + chr3_2:5543985-5544004 None:intergenic 20.0%
!!! GTTTTTTAAAACGCAAATTA+TGG - chr3_2:5544002-5544021 Msa0392420:intron 20.0%
!! TTGAACAAATGAAATCATTA+TGG - chr3_2:5544196-5544215 Msa0392420:intron 20.0%
!! TTATAATGATACATTAGTTG+AGG - chr3_2:5544296-5544315 Msa0392420:intron 20.0%
!!! CAACTTTTTTTTTTTTTTGG+TGG + chr3_2:5544398-5544417 None:intergenic 20.0%
!!! CCTCAACTTTTTTTTTTTTT+TGG + chr3_2:5544401-5544420 None:intergenic 20.0%
!! CCAAAAAAAAAAAAAAGTTG+AGG - chr3_2:5544398-5544417 Msa0392420:intron 20.0%
!!! TCTCATTTTGATAATTTTAC+CGG + chr3_2:5544557-5544576 None:intergenic 20.0%
!!! AATAAAAATCCAATTTTACC+GGG + chr3_2:5544617-5544636 None:intergenic 20.0%
!! AAAACAATTTAGATGGTTAA+TGG - chr3_2:5544731-5544750 Msa0392420:intron 20.0%
! TAATGGTAACAATAACAACA+TGG - chr3_2:5540591-5540610 Msa0392420:CDS 25.0%
!! AAAGCTAACTATTTTCCATA+TGG - chr3_2:5540625-5540644 Msa0392420:CDS 25.0%
! AAGACAATTGATGAATAAGA+GGG + chr3_2:5540719-5540738 None:intergenic 25.0%
! TAAGACAATTGATGAATAAG+AGG + chr3_2:5540720-5540739 None:intergenic 25.0%
!! AATGTGATAATGACAAACTA+TGG + chr3_2:5540748-5540767 None:intergenic 25.0%
!! TAAGCAAAAAGAAGCTTTTA+TGG - chr3_2:5541009-5541028 Msa0392420:intron 25.0%
!! AAGCAAAAAGAAGCTTTTAT+GGG - chr3_2:5541010-5541029 Msa0392420:intron 25.0%
! AATTAATTAAGACTTAGGTG+TGG + chr3_2:5541334-5541353 None:intergenic 25.0%
!! ATGACTGTGTTTTATATGTT+TGG - chr3_2:5541433-5541452 Msa0392420:intron 25.0%
!! AAGAGATTTGTCTAATCTTT+TGG + chr3_2:5541472-5541491 None:intergenic 25.0%
! TGAGCATTCTTTATAGTAAA+AGG - chr3_2:5541495-5541514 Msa0392420:intron 25.0%
!! TAGTAAAAGGTGCATTAAAT+AGG - chr3_2:5541508-5541527 Msa0392420:intron 25.0%
! TTAATCTACCTAATTTGACT+AGG + chr3_2:5541566-5541585 None:intergenic 25.0%
! TAGTGAGTAAAAAGAAACTA+GGG + chr3_2:5541811-5541830 None:intergenic 25.0%
! TTAGTGAGTAAAAAGAAACT+AGG + chr3_2:5541812-5541831 None:intergenic 25.0%
! AAAAACCCTAATAGAACATT+CGG - chr3_2:5542547-5542566 Msa0392420:intron 25.0%
!!! GTCAAAATTATTTCTACACT+TGG + chr3_2:5542621-5542640 None:intergenic 25.0%
! TAGATTTGTAAAATTGAGTC+TGG + chr3_2:5542820-5542839 None:intergenic 25.0%
! TTTCTAAGTTGTTCATCAAA+TGG + chr3_2:5542920-5542939 None:intergenic 25.0%
! AATACATTGAATCAACTTAC+TGG - chr3_2:5542947-5542966 Msa0392420:intron 25.0%
! AATCAACTTACTGGAAATAT+TGG - chr3_2:5542956-5542975 Msa0392420:intron 25.0%
! AAATATTGGAGCAGATAATA+TGG - chr3_2:5542970-5542989 Msa0392420:intron 25.0%
!!! TGATTTCTGGTGTTATAATT+AGG + chr3_2:5543067-5543086 None:intergenic 25.0%
! TAAAAAATCTTACAGTGAGT+TGG + chr3_2:5543138-5543157 None:intergenic 25.0%
! TAAATATGTGTTACATACAC+CGG - chr3_2:5543804-5543823 Msa0392420:intron 25.0%
!!! TCATTTTGATTAAAGATGTG+AGG + chr3_2:5544448-5544467 None:intergenic 25.0%
!!! CTCATTTTGATAATTTTACC+GGG + chr3_2:5544556-5544575 None:intergenic 25.0%
!! CTAAAGCAAATTTTATGATG+AGG + chr3_2:5544667-5544686 None:intergenic 25.0%
! CTTTAGATCTTTAAACATGT+TGG - chr3_2:5544681-5544700 Msa0392420:intron 25.0%
! ATGTGGTTAATTATGTTTAG+TGG + chr3_2:5544865-5544884 None:intergenic 25.0%
!! GTTGATAGGATAAACAAAAT+TGG + chr3_2:5545210-5545229 None:intergenic 25.0%
!! TTATCTTTTCATTTAGTGTG+AGG - chr3_2:5545302-5545321 Msa0392420:CDS 25.0%
! TGGAGTATCTCAAATATTCT+TGG - chr3_2:5540489-5540508 Msa0392420:three_prime_UTR 30.0%
!! AATATTCTTGGTGCTTATCA+TGG - chr3_2:5540501-5540520 Msa0392420:three_prime_UTR 30.0%
! TACACTATTGTTGATGAGAT+AGG - chr3_2:5540691-5540710 Msa0392420:CDS 30.0%
ATTAGTACTTCAATCATGCA+TGG + chr3_2:5540771-5540790 None:intergenic 30.0%
! ACCTTTTTGTGCATTTCAAA+TGG - chr3_2:5540806-5540825 Msa0392420:intron 30.0%
! TCCATTTGAAATGCACAAAA+AGG + chr3_2:5540810-5540829 None:intergenic 30.0%
AAATTCAGATTCCAAGCTTA+AGG - chr3_2:5541148-5541167 Msa0392420:intron 30.0%
!!! AAAGTGTCTTTTGAGTTTTG+AGG - chr3_2:5541245-5541264 Msa0392420:intron 30.0%
TAGTTGTTTACCCTATTGAT+TGG + chr3_2:5541311-5541330 None:intergenic 30.0%
! CTGTGTTTTATATGTTTGGT+TGG - chr3_2:5541437-5541456 Msa0392420:intron 30.0%
TGCATTAAATAGGACATTGT+AGG - chr3_2:5541518-5541537 Msa0392420:intron 30.0%
GCATTAAATAGGACATTGTA+GGG - chr3_2:5541519-5541538 Msa0392420:intron 30.0%
TAATTCTGCCTAGTCAAATT+AGG - chr3_2:5541555-5541574 Msa0392420:intron 30.0%
ATGATGCATAATTCATAGCA+GGG + chr3_2:5542202-5542221 None:intergenic 30.0%
TATGATGCATAATTCATAGC+AGG + chr3_2:5542203-5542222 None:intergenic 30.0%
AAATATTGGGAAAAGCGATA+AGG - chr3_2:5542449-5542468 Msa0392420:intron 30.0%
! CTTTACATGACGATTTTGAA+AGG - chr3_2:5542506-5542525 Msa0392420:intron 30.0%
TGGATTCATCAATGTAAAAG+CGG + chr3_2:5542763-5542782 None:intergenic 30.0%
GTCACCACTGAATAATTAAT+TGG - chr3_2:5542861-5542880 Msa0392420:CDS 30.0%
! GTTATCTTTTGAATTTGAGC+AGG - chr3_2:5542883-5542902 Msa0392420:CDS 30.0%
TGCATATTCTTTGTTGGAAT+GGG - chr3_2:5543010-5543029 Msa0392420:intron 30.0%
!! TGGTGTTATAATTAGGCATA+AGG + chr3_2:5543060-5543079 None:intergenic 30.0%
TTTGACAAGAATGTAGTTCT+AGG + chr3_2:5543181-5543200 None:intergenic 30.0%
TCTCAAATTATTAGCAGTGT+TGG - chr3_2:5543305-5543324 Msa0392420:intron 30.0%
! AGGTCAAAGGTTAATTTTCA+AGG - chr3_2:5543365-5543384 Msa0392420:intron 30.0%
! GGTCAAAGGTTAATTTTCAA+GGG - chr3_2:5543366-5543385 Msa0392420:intron 30.0%
! CATGATATGTTTTGTCATAG+AGG - chr3_2:5543402-5543421 Msa0392420:intron 30.0%
AAATTTGTGATTGCTGGATT+AGG - chr3_2:5543446-5543465 Msa0392420:CDS 30.0%
AATTTGTGATTGCTGGATTA+GGG - chr3_2:5543447-5543466 Msa0392420:CDS 30.0%
AATCTCAACAATAATCTACC+TGG - chr3_2:5543581-5543600 Msa0392420:intron 30.0%
ACTGTCAATGAATATGAATC+TGG + chr3_2:5543609-5543628 None:intergenic 30.0%
AAAGAATTTCCTGAAACATG+CGG + chr3_2:5543634-5543653 None:intergenic 30.0%
! CTTTTCAATGCAAGATCATA+TGG - chr3_2:5543650-5543669 Msa0392420:intron 30.0%
TTGTGTGTGTGAGTTTATAA+TGG - chr3_2:5544131-5544150 Msa0392420:intron 30.0%
ACAAATGAAATCATTATGGC+CGG - chr3_2:5544200-5544219 Msa0392420:intron 30.0%
GATCTTTAAACATGTTGGAT+CGG - chr3_2:5544686-5544705 Msa0392420:intron 30.0%
! ACAGTTAAGTTTGTTTGTGT+AGG - chr3_2:5545011-5545030 Msa0392420:intron 30.0%
GATTTACTGATGTGAATAGA+GGG - chr3_2:5545033-5545052 Msa0392420:intron 30.0%
ACACATAACGGTTTCTATTA+GGG + chr3_2:5545118-5545137 None:intergenic 30.0%
AACACATAACGGTTTCTATT+AGG + chr3_2:5545119-5545138 None:intergenic 30.0%
! ATAGAAACCGTTATGTGTTT+TGG - chr3_2:5545120-5545139 Msa0392420:CDS 30.0%
! TAGAAACCGTTATGTGTTTT+GGG - chr3_2:5545121-5545140 Msa0392420:CDS 30.0%
AGAAGCAGTTAACATTCTTA+TGG - chr3_2:5545160-5545179 Msa0392420:CDS 30.0%
GAAGCAGTTAACATTCTTAT+GGG - chr3_2:5545161-5545180 Msa0392420:CDS 30.0%
GAACTATTAGAGATCAATTG+TGG - chr3_2:5545324-5545343 Msa0392420:CDS 30.0%
!! AACTTGTTGATGGCTAAGTT+TGG - chr3_2:5540469-5540488 Msa0392420:three_prime_UTR 35.0%
TGAGTCACCAAATATGAACA+TGG + chr3_2:5540563-5540582 None:intergenic 35.0%
GGTGACTCACTTATTGATAA+TGG - chr3_2:5540574-5540593 Msa0392420:exon 35.0%
CCATTGAAGTCAATACCATA+TGG + chr3_2:5540643-5540662 None:intergenic 35.0%
!! CCATATGGTATTGACTTCAA+TGG - chr3_2:5540640-5540659 Msa0392420:CDS 35.0%
!! TATGGTATTGACTTCAATGG+TGG - chr3_2:5540643-5540662 Msa0392420:CDS 35.0%
AGACAAAAAGTCCTTAAGCT+TGG + chr3_2:5541162-5541181 None:intergenic 35.0%
! AGCTTAAGGACTTTTTGTCT+TGG - chr3_2:5541162-5541181 Msa0392420:intron 35.0%
TTTGTCCTATTCCAACTACA+AGG - chr3_2:5541282-5541301 Msa0392420:intron 35.0%
TACAAGGCTACCAATCAATA+GGG - chr3_2:5541298-5541317 Msa0392420:intron 35.0%
TCGTTGACACTACCATTTAA+AGG + chr3_2:5541860-5541879 None:intergenic 35.0%
TGTCACAAAGATACTCGTTT+GGG - chr3_2:5542151-5542170 Msa0392420:intron 35.0%
! TAATTCATAGCAGGGTACTT+TGG + chr3_2:5542194-5542213 None:intergenic 35.0%
CCATTGTATGCAGGAATTAA+GGG + chr3_2:5542284-5542303 None:intergenic 35.0%
TCCATTGTATGCAGGAATTA+AGG + chr3_2:5542285-5542304 None:intergenic 35.0%
TGCAACCGAATGTTCTATTA+GGG + chr3_2:5542555-5542574 None:intergenic 35.0%
ATGCAACCGAATGTTCTATT+AGG + chr3_2:5542556-5542575 None:intergenic 35.0%
! AATCGATTCTAACTTGAAGC+AGG - chr3_2:5542682-5542701 Msa0392420:intron 35.0%
TTCTAACTTGAAGCAGGAAT+TGG - chr3_2:5542688-5542707 Msa0392420:CDS 35.0%
! TCTTTTGAATTTGAGCAGGT+TGG - chr3_2:5542887-5542906 Msa0392420:CDS 35.0%
! CTTTTGAATTTGAGCAGGTT+GGG - chr3_2:5542888-5542907 Msa0392420:CDS 35.0%
TCAAGGTGCATATTCTTTGT+TGG - chr3_2:5543004-5543023 Msa0392420:intron 35.0%
GTGCATATTCTTTGTTGGAA+TGG - chr3_2:5543009-5543028 Msa0392420:intron 35.0%
TAGGCATAAGGTAGTTGTTT+AGG + chr3_2:5543048-5543067 None:intergenic 35.0%
AACACCAGAAATCAGTACAA+TGG - chr3_2:5543073-5543092 Msa0392420:intron 35.0%
!! TTGTCCATTGTACTGATTTC+TGG + chr3_2:5543080-5543099 None:intergenic 35.0%
! AAAATCTTACAGTGAGTTGG+TGG + chr3_2:5543135-5543154 None:intergenic 35.0%
TTCAGTGTAATCACATGTGT+CGG + chr3_2:5543274-5543293 None:intergenic 35.0%
AACCTTTGACCTATGAAACA+CGG + chr3_2:5543357-5543376 None:intergenic 35.0%
TCATAGAGGCTTTACAATCT+TGG - chr3_2:5543416-5543435 Msa0392420:intron 35.0%
!! GTACTTTGAGACAATATGCT+TGG + chr3_2:5543488-5543507 None:intergenic 35.0%
ATATTGTCTCAAAGTACGAG+TGG - chr3_2:5543491-5543510 Msa0392420:CDS 35.0%
ACCCTTCAATGAAAATGTGA+AGG - chr3_2:5543547-5543566 Msa0392420:CDS 35.0%
! GCCTTCACATTTTCATTGAA+GGG + chr3_2:5543551-5543570 None:intergenic 35.0%
ATTGTTGAGATTGCTCAACA+TGG + chr3_2:5543573-5543592 None:intergenic 35.0%
! ATGAATATGAATCTGGAACC+AGG + chr3_2:5543602-5543621 None:intergenic 35.0%
AAGAATTTCCTGAAACATGC+GGG + chr3_2:5543633-5543652 None:intergenic 35.0%
TGCAACTCATTAAACTTCCA+CGG - chr3_2:5543852-5543871 Msa0392420:intron 35.0%
TTGTAGTTAATTACCTACCG+TGG + chr3_2:5543872-5543891 None:intergenic 35.0%
TATAAACTCACACACACAAG+TGG + chr3_2:5544130-5544149 None:intergenic 35.0%
CAAATGAAATCATTATGGCC+GGG - chr3_2:5544201-5544220 Msa0392420:intron 35.0%
GACAGTGCATAATATATGCA+AGG - chr3_2:5544350-5544369 Msa0392420:intron 35.0%
TGCATAATATATGCAAGGTC+TGG - chr3_2:5544355-5544374 Msa0392420:intron 35.0%
GCATAATATATGCAAGGTCT+GGG - chr3_2:5544356-5544375 Msa0392420:intron 35.0%
CATAATATATGCAAGGTCTG+GGG - chr3_2:5544357-5544376 Msa0392420:intron 35.0%
!!! TTTTTTTTTGGTGGTGTCCA+GGG + chr3_2:5544389-5544408 None:intergenic 35.0%
!!! TTTTTTTTTTGGTGGTGTCC+AGG + chr3_2:5544390-5544409 None:intergenic 35.0%
ATGTTTGAACCTATGTCAGA+GGG + chr3_2:5544483-5544502 None:intergenic 35.0%
AATGTTTGAACCTATGTCAG+AGG + chr3_2:5544484-5544503 None:intergenic 35.0%
ATAGGTTCAAACATTAGACC+CGG - chr3_2:5544489-5544508 Msa0392420:intron 35.0%
ATGTTTGAACCTATGTCAGA+GGG + chr3_2:5544483-5544502 None:intergenic 35.0%
AATGTTTGAACCTATGTCAG+AGG + chr3_2:5544484-5544503 None:intergenic 35.0%
ATAGGTTCAAACATTAGACC+CGG - chr3_2:5544489-5544508 Msa0392420:intron 35.0%
ATGTTTGAACCTATGTCAGA+GGG + chr3_2:5544483-5544502 None:intergenic 35.0%
AATGTTTGAACCTATGTCAG+AGG + chr3_2:5544484-5544503 None:intergenic 35.0%
ATAGGTTCAAACATTAGACC+CGG - chr3_2:5544489-5544508 Msa0392420:intron 35.0%
AACATTAGACCCGGTAAAAT+TGG - chr3_2:5544544-5544563 Msa0392420:intron 35.0%
!! GTTGATGACGTTTAAAACTG+TGG - chr3_2:5544787-5544806 Msa0392420:intron 35.0%
GAAGATTAAGACACATGACT+TGG + chr3_2:5544843-5544862 None:intergenic 35.0%
TGCAGTTCAAATATGCAATG+TGG + chr3_2:5544882-5544901 None:intergenic 35.0%
GGATTTACTGATGTGAATAG+AGG - chr3_2:5545032-5545051 Msa0392420:intron 35.0%
ATGCATCCCAAAACACATAA+CGG + chr3_2:5545130-5545149 None:intergenic 35.0%
AGAATGTTAACTGCTTCTGT+TGG + chr3_2:5545158-5545177 None:intergenic 35.0%
CAGTTAACATTCTTATGGGA+AGG - chr3_2:5545165-5545184 Msa0392420:CDS 35.0%
TAACATTCTTATGGGAAGGA+TGG - chr3_2:5545169-5545188 Msa0392420:CDS 35.0%
! GTGCTTATCATGGTCTTAAG+TGG - chr3_2:5540511-5540530 Msa0392420:three_prime_UTR 40.0%
! TGAACATGGCAGGAACATTT+TGG + chr3_2:5540549-5540568 None:intergenic 40.0%
GTTCCTGCCATGTTCATATT+TGG - chr3_2:5540553-5540572 Msa0392420:three_prime_UTR 40.0%
TCACCAAATATGAACATGGC+AGG + chr3_2:5540559-5540578 None:intergenic 40.0%
!! TTGATTGGTAGCCTTGTAGT+TGG + chr3_2:5541296-5541315 None:intergenic 40.0%
CTACAAGGCTACCAATCAAT+AGG - chr3_2:5541297-5541316 Msa0392420:intron 40.0%
ACATTGTAGGGTCTGTAGTT+TGG - chr3_2:5541531-5541550 Msa0392420:intron 40.0%
CATTGTAGGGTCTGTAGTTT+GGG - chr3_2:5541532-5541551 Msa0392420:intron 40.0%
ATTGGCATACGTGATCAACT+AGG - chr3_2:5542017-5542036 Msa0392420:intron 40.0%
GTGTCACAAAGATACTCGTT+TGG - chr3_2:5542150-5542169 Msa0392420:intron 40.0%
ATTAATGCAGCTGAACTGCT+TGG - chr3_2:5542254-5542273 Msa0392420:CDS 40.0%
CCCTTAATTCCTGCATACAA+TGG - chr3_2:5542281-5542300 Msa0392420:CDS 40.0%
AGTTTCTTCCTGTGTCATCA+AGG + chr3_2:5542364-5542383 None:intergenic 40.0%
ATTGGGAAAAGCGATAAGGT+TGG - chr3_2:5542453-5542472 Msa0392420:intron 40.0%
ACACTTGGCAAGTGACAAAA+TGG + chr3_2:5542606-5542625 None:intergenic 40.0%
CGGATTGAACGATACATTCA+AGG + chr3_2:5542743-5542762 None:intergenic 40.0%
ATATGGCCACACAACTATCA+AGG - chr3_2:5542987-5543006 Msa0392420:intron 40.0%
! TATGCACCTTGATAGTTGTG+TGG + chr3_2:5542996-5543015 None:intergenic 40.0%
ACAACAGTATGCTGATCTCT+TGG - chr3_2:5543096-5543115 Msa0392420:intron 40.0%
GTCAAAGACTGTATGAAGCA+CGG - chr3_2:5543195-5543214 Msa0392420:intron 40.0%
ATGAAACACGGATACGAACA+TGG + chr3_2:5543345-5543364 None:intergenic 40.0%
TGTTCGTATCCGTGTTTCAT+AGG - chr3_2:5543345-5543364 Msa0392420:intron 40.0%
ATCCGTGTTTCATAGGTCAA+AGG - chr3_2:5543352-5543371 Msa0392420:intron 40.0%
GCAAGGAAATTTGTGATTGC+TGG - chr3_2:5543440-5543459 Msa0392420:intron 40.0%
! ATTGCTGGATTAGGGCTATT+GGG - chr3_2:5543455-5543474 Msa0392420:CDS 40.0%
! GGCCTTCACATTTTCATTGA+AGG + chr3_2:5543552-5543571 None:intergenic 40.0%
ACTCATTAAACTTCCACGGT+AGG - chr3_2:5543856-5543875 Msa0392420:intron 40.0%
GGCAAAATGCCGAAATTGTT+AGG - chr3_2:5544068-5544087 Msa0392420:intron 40.0%
AAATGCCGAAATTGTTAGGC+CGG - chr3_2:5544072-5544091 Msa0392420:intron 40.0%
!! GAGTCTTAGCTTGATTTGCT+AGG + chr3_2:5544227-5544246 None:intergenic 40.0%
GCAAATCAAGCTAAGACTCT+AGG - chr3_2:5544228-5544247 Msa0392420:intron 40.0%
TACCAACTGAGTTAAGCTCA+CGG + chr3_2:5544328-5544347 None:intergenic 40.0%
! TGAGCTTAACTCAGTTGGTA+AGG - chr3_2:5544328-5544347 Msa0392420:intron 40.0%
TGTTTGAACCTATGTCAGAG+GGG + chr3_2:5544482-5544501 None:intergenic 40.0%
TGTTTGAACCTATGTCAGAG+GGG + chr3_2:5544482-5544501 None:intergenic 40.0%
TGTTTGAACCTATGTCAGAG+GGG + chr3_2:5544482-5544501 None:intergenic 40.0%
! TTTGACCTCTGTTTCTTCCA+AGG + chr3_2:5545067-5545086 None:intergenic 40.0%
TTCTATTAGGGCATGGAGTT+TGG + chr3_2:5545106-5545125 None:intergenic 40.0%
TAACGGTTTCTATTAGGGCA+TGG + chr3_2:5545113-5545132 None:intergenic 40.0%
! ATGGGAAGGATGGCTTTTAA+TGG - chr3_2:5545179-5545198 Msa0392420:CDS 40.0%
GCAAGTTGCTGAATGTTGAT+AGG + chr3_2:5545224-5545243 None:intergenic 40.0%
!! GGTAGCCTTGTAGTTGGAAT+AGG + chr3_2:5541290-5541309 None:intergenic 45.0%
! ATGAAGCATTTGATCCCCTG+TGG + chr3_2:5542309-5542328 None:intergenic 45.0%
ACAGGGGATCAAATGCTTCA+TGG - chr3_2:5542308-5542327 Msa0392420:CDS 45.0%
GATTAGGCGTGTTTCAGTGT+CGG - chr3_2:5543228-5543247 Msa0392420:intron 45.0%
! GTAATCACATGTGTCGGTGT+CGG + chr3_2:5543268-5543287 None:intergenic 45.0%
GGCTTTACAATCTTGGAGCA+AGG - chr3_2:5543423-5543442 Msa0392420:intron 45.0%
! GATTGCTGGATTAGGGCTAT+TGG - chr3_2:5543454-5543473 Msa0392420:CDS 45.0%
TCCAGAAGTCCTAGCTCAAT+TGG - chr3_2:5544047-5544066 Msa0392420:intron 45.0%
! GGCATTTTGCCAATTGAGCT+AGG + chr3_2:5544059-5544078 None:intergenic 45.0%
AAACTCACACACACAAGTGG+AGG + chr3_2:5544127-5544146 None:intergenic 45.0%
!! TTAGCTTGATTTGCTAGGCC+CGG + chr3_2:5544222-5544241 None:intergenic 45.0%
CAAGCTAAGACTCTAGGCTT+CGG - chr3_2:5544234-5544253 Msa0392420:intron 45.0%
ACCAACTGAGTTAAGCTCAC+GGG + chr3_2:5544327-5544346 None:intergenic 45.0%
GTGAGGTGATTAAAGATGCG+AGG + chr3_2:5544431-5544450 None:intergenic 45.0%
TCTCAAATCCCCTCTGACAT+AGG - chr3_2:5544471-5544490 Msa0392420:intron 45.0%
! AGGGGATTTGAGATTCTACC+GGG + chr3_2:5544510-5544529 None:intergenic 45.0%
! GAGGGGATTTGAGATTCTAC+CGG + chr3_2:5544511-5544530 None:intergenic 45.0%
TCTCAAATCCCCTCTGACAT+AGG - chr3_2:5544471-5544490 Msa0392420:intron 45.0%
TCTCAAATCCCCTCTGACAT+AGG - chr3_2:5544471-5544490 Msa0392420:intron 45.0%
!! GATGTGAATAGAGGGTGTTG+TGG - chr3_2:5545041-5545060 Msa0392420:intron 45.0%
TTAGGGCATGGAGTTTGGAA+TGG + chr3_2:5545101-5545120 None:intergenic 45.0%
!!! AAATATAAGTATATTTTTTT+TGG + chr3_2:5544178-5544197 None:intergenic 5.0%
GTCTTAAGTGGTGCAGTCAC+AGG - chr3_2:5540523-5540542 Msa0392420:three_prime_UTR 50.0%
CCATTTGAGAAGCGACCAGT+CGG + chr3_2:5540670-5540689 None:intergenic 50.0%
CTGCATACAATGGAGCCACA+GGG - chr3_2:5542291-5542310 Msa0392420:CDS 50.0%
TGCATACAATGGAGCCACAG+GGG - chr3_2:5542292-5542311 Msa0392420:CDS 50.0%
AACTATGCTTCAGCTGCTGC+TGG - chr3_2:5542335-5542354 Msa0392420:CDS 50.0%
! GCTGGAATCCTTGATGACAC+AGG - chr3_2:5542353-5542372 Msa0392420:CDS 50.0%
TATGAAGCACGGTCACTCCT+CGG - chr3_2:5543206-5543225 Msa0392420:intron 50.0%
ACTGAAACACGCCTAATCCG+AGG + chr3_2:5543226-5543245 None:intergenic 50.0%
CACGGATACGAACATGGACA+CGG + chr3_2:5543339-5543358 None:intergenic 50.0%
TGACAGTTCCCGCATGTTTC+AGG - chr3_2:5543622-5543641 Msa0392420:intron 50.0%
TCCAGAAGTCCTAGCTCAAC+TGG - chr3_2:5543952-5543971 Msa0392420:intron 50.0%
! GGCATTTTGCCAGTTGAGCT+AGG + chr3_2:5543964-5543983 None:intergenic 50.0%
GCCAATTGAGCTAGGACTTC+TGG + chr3_2:5544051-5544070 None:intergenic 50.0%
GGCATCCGGCCTAACAATTT+CGG + chr3_2:5544080-5544099 None:intergenic 50.0%
! ACACACACAAGTGGAGGTAC+CGG + chr3_2:5544121-5544140 None:intergenic 50.0%
CCAACTGAGTTAAGCTCACG+GGG + chr3_2:5544326-5544345 None:intergenic 50.0%
!! AATAGAGGGTGTTGTGGCCT+TGG - chr3_2:5545047-5545066 Msa0392420:intron 50.0%
! TGTGGCCTTGGAAGAAACAG+AGG - chr3_2:5545059-5545078 Msa0392420:intron 50.0%
!! GACTTCAATGGTGGACCGAC+TGG - chr3_2:5540652-5540671 Msa0392420:CDS 55.0%
! CCGACTGGTCGCTTCTCAAA+TGG - chr3_2:5540667-5540686 Msa0392420:CDS 55.0%
CCTGTGGCTCCATTGTATGC+AGG + chr3_2:5542293-5542312 None:intergenic 55.0%
CCTGCATACAATGGAGCCAC+AGG - chr3_2:5542290-5542309 Msa0392420:CDS 55.0%
GCCAGTTGAGCTAGGACTTC+TGG + chr3_2:5543956-5543975 None:intergenic 55.0%
!! ACACACAAGTGGAGGTACCG+GGG + chr3_2:5544119-5544138 None:intergenic 55.0%
!! CACACACAAGTGGAGGTACC+GGG + chr3_2:5544120-5544139 None:intergenic 55.0%
CCCCGTGAGCTTAACTCAGT+TGG - chr3_2:5544323-5544342 Msa0392420:intron 55.0%
GCACGGTCACTCCTCGGATT+AGG - chr3_2:5543212-5543231 Msa0392420:intron 60.0%
GTTAGGCCGGATGCCATGAC+CGG - chr3_2:5544085-5544104 Msa0392420:intron 60.0%
TTAGGCCGGATGCCATGACC+GGG - chr3_2:5544086-5544105 Msa0392420:intron 60.0%
! AAGGTCTGGGGTTCGAACCC+TGG - chr3_2:5544369-5544388 Msa0392420:intron 60.0%
TAGGCCGGATGCCATGACCG+GGG - chr3_2:5544087-5544106 Msa0392420:intron 65.0%
CGAACCCCGGTCATGGCATC+CGG + chr3_2:5544094-5544113 None:intergenic 65.0%
CATGACCGGGGTTCGAACCC+CGG - chr3_2:5544099-5544118 Msa0392420:intron 65.0%
!! AGGTACCGGGGTTCGAACCC+CGG + chr3_2:5544107-5544126 None:intergenic 65.0%
CGGGGTTCGAACCCCGGTCA+TGG + chr3_2:5544101-5544120 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 5540463 5545368 5540463 ID=Msa0392420;Name=Msa0392420
chr3_2 mRNA 5540463 5545368 5540463 ID=Msa0392420-mRNA-1;Parent=Msa0392420;Name=Msa0392420-mRNA-1;_AED=0.04;_eAED=0.04;_QI=15|1|1|1|1|1|5|115|355
chr3_2 exon 5540463 5540798 5540463 ID=Msa0392420-mRNA-1:exon:1388;Parent=Msa0392420-mRNA-1
chr3_2 exon 5542160 5542409 5542160 ID=Msa0392420-mRNA-1:exon:1387;Parent=Msa0392420-mRNA-1
chr3_2 exon 5542687 5542926 5542687 ID=Msa0392420-mRNA-1:exon:1386;Parent=Msa0392420-mRNA-1
chr3_2 exon 5543446 5543567 5543446 ID=Msa0392420-mRNA-1:exon:1385;Parent=Msa0392420-mRNA-1
chr3_2 exon 5545119 5545368 5545119 ID=Msa0392420-mRNA-1:exon:1384;Parent=Msa0392420-mRNA-1
chr3_2 five_prime_UTR 5545354 5545368 5545354 ID=Msa0392420-mRNA-1:five_prime_utr;Parent=Msa0392420-mRNA-1
chr3_2 CDS 5545119 5545353 5545119 ID=Msa0392420-mRNA-1:cds;Parent=Msa0392420-mRNA-1
chr3_2 CDS 5543446 5543567 5543446 ID=Msa0392420-mRNA-1:cds;Parent=Msa0392420-mRNA-1
chr3_2 CDS 5542687 5542926 5542687 ID=Msa0392420-mRNA-1:cds;Parent=Msa0392420-mRNA-1
chr3_2 CDS 5542160 5542409 5542160 ID=Msa0392420-mRNA-1:cds;Parent=Msa0392420-mRNA-1
chr3_2 CDS 5540578 5540798 5540578 ID=Msa0392420-mRNA-1:cds;Parent=Msa0392420-mRNA-1
chr3_2 three_prime_UTR 5540463 5540577 5540463 ID=Msa0392420-mRNA-1:three_prime_utr;Parent=Msa0392420-mRNA-1
Gene Sequence

>Msa0392420

ATGGCTAAGTTTGGAGTATCTCAAATATTCTTGGTGCTTATCATGGTCTTAAGTGGTGCAGTCACAGGCCAAAATGTTCCTGCCATGTTCATATTTGGTGACTCACTTATTGATAATGGTAACAATAACAACATGGCTTCATTAGCTAAAGCTAACTATTTTCCATATGGTATTGACTTCAATGGTGGACCGACTGGTCGCTTCTCAAATGGTTACACTATTGTTGATGAGATAGCTGAACTGCTTGGACTTCCCTTAATTCCTGCATACAATGGAGCCACAGGGGATCAAATGCTTCATGGAGTAAACTATGCTTCAGCTGCTGCTGGAATCCTTGATGACACAGGAAGAAACTTTGTTGGGCGCATACCATTTGATGAACAACTTAGAAACTTTGAGAATACATTGAATCAACTTACTGGAAATATTGGAGCAGATAATATGGCCACACAACTATCAAGGTGCATATTCTTTGTTGGAATGGGAAGCAATGACTACCTAAACAACTACCTTATGCCTAATTATAACACCAGAAATCAGTACAATGGACAACAGTATGCTGATCTCTTGGTTCAAACATATAACCACCAACTCACTAGGCTTTACAATCTTGGAGCAAGGAAATTTGTGATTGCTGGATTAGGGCTATTGGGATGTACTCCAAGCATATTGTCTCAAAGTACGAGTGGAAGCTGCTCTGAACAAGTGAACATGCTAGTGCAACCCTTCAATGAAAATGTGAAGGCCATGTTGAGCAATCTCAACAATAATCTACCTGGTTCCAGATTCATATTCATTGACAGTTCCCGCATGTTTCAGGAAATTCTTTTCAATGCAAGATCATATGGATTTACTGATGTGAATAGAGGGTGTTGTGGCCTTGGAAGAAACAGAGGTCAAATAACTTGTCTACCATTCCAAACTCCATGCCCTAATAGAAACCGTTATGTGTTTTGGGATGCATTTCATCCAACAGAAGCAGTTAACATTCTTATGGGAAGGATGGCTTTTAATGGCAATACCAATTTTGTTTATCCTATCAACATTCAGCAACTTGCTCAACTATAA
Protein sequence

>Msa0392420

MAKFGVSQIFLVLIMVLSGAVTGQNVPAMFIFGDSLIDNGNNNNMASLAKANYFPYGIDFNGGPTGRFSNGYTIVDEIAELLGLPLIPAYNGATGDQMLHGVNYASAAAGILDDTGRNFVGRIPFDEQLRNFENTLNQLTGNIGADNMATQLSRCIFFVGMGSNDYLNNYLMPNYNTRNQYNGQQYADLLVQTYNHQLTRLYNLGARKFVIAGLGLLGCTPSILSQSTSGSCSEQVNMLVQPFNENVKAMLSNLNNNLPGSRFIFIDSSRMFQEILFNARSYGFTDVNRGCCGLGRNRGQITCLPFQTPCPNRNRYVFWDAFHPTEAVNILMGRMAFNGNTNFVYPINIQQLAQL*