AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0535040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535040 MtrunA17_Chr4g0008851 98.378 370 6 0 1 370 1 370 0.0 752
Msa0535040 MtrunA17_Chr7g0274991 75.741 371 87 2 1 370 1 369 0.0 587
Msa0535040 MtrunA17_Chr7g0275011 69.945 366 103 2 9 369 6 369 0.0 525
Msa0535040 MtrunA17_Chr7g0275001 68.802 359 108 3 13 370 7 362 0.0 515
Msa0535040 MtrunA17_Chr1g0189931 70.326 337 98 1 31 367 31 365 0.0 512
Msa0535040 MtrunA17_Chr6g0457921 67.867 361 111 3 13 370 8 366 2.06e-180 504
Msa0535040 MtrunA17_Chr7g0275021 65.854 369 115 3 11 370 4 370 8.53e-179 501
Msa0535040 MtrunA17_Chr1g0189901 65.110 364 118 3 12 368 4 365 4.93e-176 494
Msa0535040 MtrunA17_Chr1g0182811 61.773 361 134 3 10 368 11 369 2.76e-166 469
Msa0535040 MtrunA17_Chr7g0215961 62.500 360 118 3 13 370 12 356 3.88e-164 463
Msa0535040 MtrunA17_Chr1g0189891 62.740 365 122 5 9 369 5 359 3.95e-161 456
Msa0535040 MtrunA17_Chr5g0434621 38.889 342 201 7 10 349 3 338 1.71e-78 245
Msa0535040 MtrunA17_Chr4g0068441 37.571 354 213 6 13 363 17 365 6.21e-74 234
Msa0535040 MtrunA17_Chr8g0374101 36.512 367 219 9 8 363 10 373 1.07e-73 233
Msa0535040 MtrunA17_Chr3g0131321 37.092 337 197 6 32 360 34 363 4.49e-70 224
Msa0535040 MtrunA17_Chr4g0017431 32.687 361 237 4 7 366 8 363 3.53e-69 221
Msa0535040 MtrunA17_Chr2g0294311 35.657 373 219 8 7 364 5 371 3.65e-69 221
Msa0535040 MtrunA17_Chr8g0380041 36.134 357 219 7 14 366 12 363 5.04e-69 221
Msa0535040 MtrunA17_Chr2g0294301 36.283 339 209 5 29 364 32 366 7.91e-69 220
Msa0535040 MtrunA17_Chr3g0077571 35.028 354 223 6 10 363 8 354 1.79e-68 219
Msa0535040 MtrunA17_Chr5g0438641 34.294 347 218 7 1 343 1 341 1.89e-68 219
Msa0535040 MtrunA17_Chr3g0086641 37.464 347 203 8 6 343 5 346 5.58e-68 218
Msa0535040 MtrunA17_Chr3g0105401 37.135 342 205 8 6 343 3 338 1.52e-67 216
Msa0535040 MtrunA17_Chr5g0438621 35.503 338 201 7 15 340 4 336 7.74e-67 215
Msa0535040 MtrunA17_Chr3g0092131 36.593 317 195 5 34 348 25 337 5.01e-66 213
Msa0535040 MtrunA17_Chr2g0285061 37.353 340 198 8 10 343 11 341 5.09e-66 213
Msa0535040 MtrunA17_Chr3g0120861 35.802 324 200 6 25 345 31 349 7.00e-66 213
Msa0535040 MtrunA17_Chr5g0444401 35.380 342 205 6 32 365 28 361 4.84e-65 211
Msa0535040 MtrunA17_Chr4g0060811 37.224 317 193 5 34 348 29 341 4.27e-64 208
Msa0535040 MtrunA17_Chr5g0438631 36.709 316 191 6 32 343 28 338 7.41e-64 207
Msa0535040 MtrunA17_Chr1g0156921 34.375 352 210 7 7 344 8 352 4.93e-63 205
Msa0535040 MtrunA17_Chr3g0099151 34.795 365 218 8 13 366 67 422 1.91e-62 206
Msa0535040 MtrunA17_Chr3g0099161 34.435 363 221 9 13 366 72 426 5.38e-62 204
Msa0535040 MtrunA17_Chr5g0396511 33.934 333 215 4 34 364 48 377 1.03e-61 202
Msa0535040 MtrunA17_Chr5g0432101 34.161 322 201 7 32 348 33 348 2.54e-61 201
Msa0535040 MtrunA17_Chr1g0156931 34.675 323 203 6 28 348 37 353 3.10e-61 201
Msa0535040 MtrunA17_Chr8g0371491 34.286 350 207 8 15 346 8 352 1.30e-60 199
Msa0535040 MtrunA17_Chr3g0077581 33.875 369 222 10 14 366 8 370 7.47e-59 194
Msa0535040 MtrunA17_Chr5g0405831 35.127 316 196 7 32 343 43 353 8.33e-59 194
Msa0535040 MtrunA17_Chr3g0099231 32.787 366 230 8 7 364 2 359 8.61e-59 195
Msa0535040 MtrunA17_Chr2g0301641 33.243 367 219 9 18 369 25 380 1.10e-58 195
Msa0535040 MtrunA17_Chr2g0330781 34.472 322 200 7 32 348 31 346 3.01e-58 192
Msa0535040 MtrunA17_Chr1g0156901 35.736 333 196 7 32 358 50 370 4.26e-58 192
Msa0535040 MtrunA17_Chr1g0156891 35.328 351 214 8 13 355 20 365 5.58e-58 192
Msa0535040 MtrunA17_Chr8g0371481 33.742 326 207 7 32 353 41 361 2.44e-57 191
Msa0535040 MtrunA17_Chr3g0085881 35.224 335 199 9 32 364 33 351 3.58e-57 190
Msa0535040 MtrunA17_Chr8g0341001 33.144 353 224 9 1 348 2 347 4.62e-57 189
Msa0535040 MtrunA17_Chr2g0320671 33.903 351 222 7 1 348 1 344 4.13e-56 187
Msa0535040 MtrunA17_Chr4g0046151 31.268 355 224 7 13 350 15 366 4.44e-56 187
Msa0535040 MtrunA17_Chr5g0405821 35.331 317 195 8 32 343 43 354 4.81e-56 187
Msa0535040 MtrunA17_Chr8g0371471 32.923 325 210 6 32 353 41 360 6.93e-56 187
Msa0535040 MtrunA17_Chr1g0189911 55.405 148 63 2 221 367 2 147 7.11e-56 180
Msa0535040 MtrunA17_Chr3g0142941 33.438 320 196 6 32 344 47 356 9.36e-56 186
Msa0535040 MtrunA17_Chr1g0156911 34.286 315 200 5 32 344 37 346 1.26e-55 186
Msa0535040 MtrunA17_Chr4g0027521 33.951 324 201 7 32 348 27 344 2.38e-53 180
Msa0535040 MtrunA17_Chr3g0142921 32.424 330 212 7 32 358 36 357 8.33e-53 179
Msa0535040 MtrunA17_Chr2g0283191 31.487 343 222 6 7 339 13 352 4.21e-52 177
Msa0535040 MtrunA17_Chr2g0284921 32.070 343 214 7 29 369 31 356 1.03e-50 173
Msa0535040 MtrunA17_Chr8g0349321 33.043 345 207 8 29 364 34 363 1.11e-50 173
Msa0535040 MtrunA17_Chr2g0284951 32.153 339 212 8 32 367 33 356 1.31e-50 173
Msa0535040 MtrunA17_Chr8g0380031 30.435 368 237 9 1 366 56 406 9.26e-50 172
Msa0535040 MtrunA17_Chr1g0157001 33.043 345 200 8 37 363 41 372 1.86e-49 170
Msa0535040 MtrunA17_Chr8g0370951 31.421 366 229 11 13 364 9 366 3.58e-49 169
Msa0535040 MtrunA17_Chr8g0349341 31.793 368 218 11 13 364 13 363 1.32e-47 165
Msa0535040 MtrunA17_Chr2g0285001 30.376 372 223 9 13 367 10 362 4.51e-47 164
Msa0535040 MtrunA17_Chr2g0284991 31.267 371 231 9 7 369 1 355 1.58e-46 162
Msa0535040 MtrunA17_Chr7g0228261 72.043 93 26 0 277 369 3 95 6.62e-46 152
Msa0535040 MtrunA17_Chr8g0370981 30.000 390 206 8 30 365 42 418 9.21e-46 162
Msa0535040 MtrunA17_Chr5g0437421 29.268 328 219 5 32 351 32 354 6.78e-45 158
Msa0535040 MtrunA17_Chr8g0344941 28.650 363 228 10 8 351 9 359 1.79e-44 157
Msa0535040 MtrunA17_Chr1g0189921 63.333 120 38 1 13 126 6 125 4.96e-44 149
Msa0535040 MtrunA17_Chr2g0284941 30.925 346 187 9 34 367 35 340 1.44e-41 149
Msa0535040 MtrunA17_Chr8g0349301 33.448 290 173 8 29 314 34 307 6.44e-41 146
Msa0535040 MtrunA17_Chr8g0344931 28.533 368 237 10 7 366 12 361 1.14e-40 147
Msa0535040 MtrunA17_Chr8g0370961 31.381 239 150 5 129 363 14 242 4.71e-39 139
Msa0535040 MtrunA17_Chr5g0420811 29.032 341 218 11 13 346 11 334 2.55e-38 140
Msa0535040 MtrunA17_Chr3g0085231 26.113 337 226 9 32 364 31 348 1.53e-35 133
Msa0535040 MtrunA17_Chr8g0349331 28.406 345 193 8 29 364 32 331 2.29e-35 132
Msa0535040 MtrunA17_Chr8g0381581 27.926 376 221 15 9 350 15 374 1.57e-32 125
Msa0535040 MtrunA17_Chr1g0160031 28.158 380 227 16 1 351 7 369 8.12e-31 120
Msa0535040 MtrunA17_Chr1g0160011 27.989 368 216 14 13 350 21 369 1.47e-30 120
Msa0535040 MtrunA17_Chr7g0254461 26.722 363 213 14 24 351 35 379 2.60e-30 119
Msa0535040 MtrunA17_Chr7g0271551 28.614 339 207 13 34 357 38 356 3.40e-29 116
Msa0535040 MtrunA17_Chr7g0229591 38.462 169 102 2 14 181 12 179 8.37e-28 108
Msa0535040 MtrunA17_Chr2g0283481 30.499 341 203 13 32 350 47 375 1.54e-27 112
Msa0535040 MtrunA17_Chr1g0159991 29.040 396 222 16 1 359 4 377 3.95e-27 110
Msa0535040 MtrunA17_Chr7g0275291 28.385 384 221 18 1 351 1 363 5.23e-27 110
Msa0535040 MtrunA17_Chr4g0027571 28.125 224 155 4 135 356 3 222 2.67e-26 105
Msa0535040 MtrunA17_Chr2g0283511 29.086 361 222 14 13 350 12 361 8.95e-26 107
Msa0535040 MtrunA17_Chr1g0160101 27.708 397 225 17 5 361 12 386 1.48e-25 106
Msa0535040 MtrunA17_Chr2g0283501 29.825 342 205 13 32 350 31 360 1.87e-25 105
Msa0535040 MtrunA17_Chr6g0455661 26.941 219 155 3 130 346 238 453 6.70e-25 105
Msa0535040 MtrunA17_Chr6g0455661 50.000 94 44 2 30 123 29 119 1.42e-17 84.0
Msa0535040 MtrunA17_Chr1g0159971 27.179 390 219 16 3 350 12 378 6.93e-25 104
Msa0535040 MtrunA17_Chr1g0159981 26.289 388 233 16 6 359 19 387 7.24e-25 104
Msa0535040 MtrunA17_Chr7g0273101 26.836 354 213 11 27 350 24 361 1.01e-24 103
Msa0535040 MtrunA17_Chr6g0459921 26.484 219 156 3 130 346 127 342 1.17e-24 103
Msa0535040 MtrunA17_Chr2g0301581 28.000 375 216 14 1 350 1 346 8.37e-24 100
Msa0535040 MtrunA17_Chr7g0226941 27.762 353 203 15 32 351 33 366 2.97e-23 99.8
Msa0535040 MtrunA17_Chr2g0301541 27.733 375 217 14 1 350 1 346 1.01e-22 97.8
Msa0535040 MtrunA17_Chr8g0352901 27.273 374 229 13 7 351 1 360 1.28e-22 97.8
Msa0535040 MtrunA17_Chr3g0104821 25.770 357 230 13 17 350 29 373 2.73e-22 97.1
Msa0535040 MtrunA17_Chr2g0283531 29.915 351 192 17 32 350 31 359 1.18e-21 95.1
Msa0535040 MtrunA17_Chr6g0469511 46.491 114 59 2 32 144 30 142 1.34e-21 89.7
Msa0535040 MtrunA17_Chr7g0226911 22.835 381 236 13 9 351 12 372 1.74e-21 94.7
Msa0535040 MtrunA17_Chr6g0450721 27.193 342 210 12 32 357 33 351 1.88e-21 94.4
Msa0535040 MtrunA17_Chr6g0450731 26.016 369 230 13 5 351 2 349 4.02e-21 93.6
Msa0535040 MtrunA17_Chr8g0347751 25.000 368 229 14 16 351 18 370 4.17e-21 93.6
Msa0535040 MtrunA17_Chr1g0191461 25.956 366 225 13 13 349 13 361 5.16e-21 93.2
Msa0535040 MtrunA17_Chr6g0450701 27.487 382 225 16 5 351 2 366 6.96e-21 92.8
Msa0535040 MtrunA17_Chr7g0266061 25.000 328 207 12 33 347 43 344 5.41e-20 90.1
Msa0535040 MtrunA17_Chr1g0178931 25.000 320 202 13 30 337 35 328 8.86e-20 89.4
Msa0535040 MtrunA17_Chr4g0027561 43.103 116 65 1 14 128 12 127 1.08e-19 84.7
Msa0535040 MtrunA17_Chr6g0450711 27.089 347 207 14 32 351 122 449 2.71e-19 89.0
Msa0535040 MtrunA17_Chr4g0057991 25.723 346 222 13 31 357 38 367 3.71e-19 87.8
Msa0535040 MtrunA17_Chr7g0226931 23.367 398 236 14 3 351 9 386 4.43e-19 87.8
Msa0535040 MtrunA17_Chr8g0370971 39.456 147 78 4 1 136 1 147 1.03e-18 82.4
Msa0535040 MtrunA17_Chr3g0112821 26.471 340 221 13 31 354 29 355 1.51e-18 85.9
Msa0535040 MtrunA17_Chr5g0440501 23.868 243 171 6 132 364 11 249 2.60e-18 83.6
Msa0535040 MtrunA17_Chr2g0317271 25.895 363 225 13 12 350 2 344 3.30e-18 85.1
Msa0535040 MtrunA17_Chr1g0178941 25.153 326 202 13 30 337 38 339 4.60e-18 84.7
Msa0535040 MtrunA17_Chr1g0198351 25.352 355 209 16 7 337 11 333 1.21e-17 83.2
Msa0535040 MtrunA17_Chr0c01g0489581 26.462 359 216 14 18 350 8 344 1.45e-17 83.2
Msa0535040 MtrunA17_Chr2g0317261 25.620 363 226 13 12 350 2 344 1.82e-17 82.8
Msa0535040 MtrunA17_Chr0c01g0489571 26.462 359 216 14 18 350 8 344 2.05e-17 82.8
Msa0535040 MtrunA17_Chr7g0229581 29.139 151 103 3 208 356 7 155 5.68e-17 77.8
Msa0535040 MtrunA17_Chr2g0301551 26.441 295 170 11 78 350 33 302 1.89e-14 73.6
Msa0535040 MtrunA17_Chr8g0339251 25.758 330 202 11 7 318 1 305 3.83e-14 72.8
Msa0535040 MtrunA17_Chr2g0301571 26.441 295 170 11 78 350 33 302 4.56e-14 72.4
Msa0535040 MtrunA17_Chr2g0301591 26.349 315 178 11 1 293 1 283 2.22e-12 67.0
Msa0535040 MtrunA17_Chr2g0321991 38.393 112 61 2 14 117 8 119 4.43e-12 62.8
Msa0535040 MtrunA17_Chr4g0018571 30.137 146 98 3 205 348 27 170 6.35e-12 63.9
Msa0535040 MtrunA17_Chr2g0284931 25.541 231 136 5 123 353 11 205 5.09e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535040 AT5G33370.1 70.225 356 104 1 15 370 13 366 0.0 537
Msa0535040 AT3G04290.1 72.807 342 91 1 27 368 24 363 0.0 525
Msa0535040 AT5G18430.1 67.507 357 109 4 12 366 11 362 4.33e-172 484
Msa0535040 AT4G28780.1 63.859 368 120 4 12 369 2 366 2.94e-167 472
Msa0535040 AT5G33370.2 70.357 280 81 1 15 294 13 290 1.86e-144 412
Msa0535040 AT2G23540.1 37.427 342 205 7 32 366 48 387 1.37e-77 244
Msa0535040 AT3G50400.1 39.481 347 199 10 22 360 25 368 1.86e-76 241
Msa0535040 AT2G42990.1 37.249 349 210 7 11 356 8 350 3.42e-74 234
Msa0535040 AT4G18970.1 39.823 339 193 7 30 363 26 358 9.08e-74 233
Msa0535040 AT4G18970.2 39.823 339 193 7 30 363 26 358 4.81e-73 233
Msa0535040 AT5G15720.1 37.101 345 209 5 26 366 24 364 5.90e-73 231
Msa0535040 AT5G37690.1 39.617 313 183 5 34 345 29 336 6.76e-73 231
Msa0535040 AT5G45670.1 35.616 365 226 7 6 366 3 362 1.58e-72 230
Msa0535040 AT1G29660.1 35.946 370 227 8 1 366 1 364 1.37e-70 225
Msa0535040 AT1G71250.1 34.734 357 222 5 15 363 17 370 3.18e-70 224
Msa0535040 AT5G08460.1 36.716 335 208 4 32 363 49 382 9.06e-70 224
Msa0535040 AT1G29670.1 35.734 361 219 6 14 366 8 363 1.36e-69 223
Msa0535040 AT1G29670.2 36.034 358 216 6 14 363 76 428 7.21e-69 223
Msa0535040 AT1G71691.2 38.279 337 200 7 32 367 55 384 2.87e-68 220
Msa0535040 AT4G26790.1 35.938 320 197 6 32 348 29 343 1.09e-67 217
Msa0535040 AT4G26790.2 35.938 320 197 6 32 348 29 343 1.09e-67 217
Msa0535040 AT5G37690.2 38.339 313 179 6 34 345 29 328 1.79e-67 217
Msa0535040 AT1G75880.1 36.250 320 197 5 32 348 52 367 6.70e-67 216
Msa0535040 AT1G75880.2 36.250 320 196 6 32 348 52 366 4.78e-66 214
Msa0535040 AT1G33811.1 36.467 351 211 9 20 363 22 367 3.69e-65 211
Msa0535040 AT2G30310.1 35.783 313 191 7 32 339 34 341 2.30e-64 209
Msa0535040 AT2G30220.1 36.278 317 192 7 32 343 33 344 2.98e-64 209
Msa0535040 AT2G04570.1 35.604 323 200 6 32 351 28 345 3.27e-64 208
Msa0535040 AT1G75890.2 35.913 323 194 8 32 348 47 362 4.13e-64 209
Msa0535040 AT1G75890.3 35.913 323 194 8 32 348 76 391 8.13e-64 209
Msa0535040 AT1G74460.1 36.308 325 200 6 34 356 25 344 1.36e-63 207
Msa0535040 AT1G58430.1 36.452 310 189 6 32 337 35 340 2.54e-63 206
Msa0535040 AT5G42170.1 35.000 320 197 6 32 348 50 361 4.95e-62 203
Msa0535040 AT2G31540.1 36.278 317 192 7 32 343 35 346 7.54e-62 202
Msa0535040 AT1G06990.1 34.295 312 196 6 32 339 37 343 1.11e-61 202
Msa0535040 AT5G03820.2 36.769 359 207 8 1 348 28 377 1.91e-61 202
Msa0535040 AT5G03820.1 36.261 353 199 8 13 348 6 349 3.56e-61 201
Msa0535040 AT5G41890.1 32.065 368 225 9 14 363 12 372 3.84e-61 201
Msa0535040 AT1G75890.1 34.627 335 195 9 32 348 47 375 5.00e-61 201
Msa0535040 AT2G24560.1 35.144 313 189 7 32 337 34 339 1.12e-60 199
Msa0535040 AT5G03810.1 36.827 353 204 8 6 348 2 345 2.52e-60 198
Msa0535040 AT1G75900.1 32.945 343 219 7 6 344 17 352 2.94e-60 198
Msa0535040 AT1G20120.1 33.851 322 201 7 32 348 78 392 7.90e-60 198
Msa0535040 AT4G10950.2 34.030 335 216 4 32 364 71 402 2.33e-59 197
Msa0535040 AT3G16370.1 36.909 317 191 7 32 344 30 341 2.78e-59 196
Msa0535040 AT5G45950.1 33.033 333 211 7 25 353 29 353 6.45e-59 195
Msa0535040 AT1G59406.1 35.202 321 195 6 32 348 30 341 7.58e-59 194
Msa0535040 AT1G59030.1 35.202 321 195 6 32 348 30 341 7.58e-59 194
Msa0535040 AT1G58725.1 35.202 321 195 6 32 348 30 341 7.58e-59 194
Msa0535040 AT1G20130.2 33.033 333 200 8 32 348 184 509 8.96e-58 196
Msa0535040 AT1G20130.1 33.033 333 200 8 32 348 204 529 1.67e-57 196
Msa0535040 AT5G22810.1 36.615 325 191 9 32 348 34 351 2.34e-57 191
Msa0535040 AT5G45960.1 32.907 313 202 4 32 339 47 356 3.04e-57 191
Msa0535040 AT1G20132.1 35.238 315 196 6 32 343 61 370 4.14e-57 191
Msa0535040 AT4G10950.1 34.226 336 210 6 32 364 71 398 1.44e-56 190
Msa0535040 AT3G53100.1 36.760 321 193 7 32 348 29 343 3.63e-56 187
Msa0535040 AT5G63170.1 34.911 338 199 9 5 339 2 321 4.42e-55 184
Msa0535040 AT1G58520.3 34.579 321 190 7 32 348 30 334 8.45e-55 184
Msa0535040 AT1G58525.1 34.579 321 190 7 32 348 30 334 8.45e-55 184
Msa0535040 AT5G55050.1 33.431 341 214 7 33 365 40 375 6.38e-54 182
Msa0535040 AT2G19060.1 32.857 350 207 11 12 350 4 336 1.08e-53 181
Msa0535040 AT5G15720.3 34.296 277 176 4 94 366 59 333 3.80e-53 179
Msa0535040 AT2G19010.1 33.048 351 211 10 17 363 15 345 3.95e-53 179
Msa0535040 AT5G40990.1 31.481 378 231 11 9 367 6 374 4.31e-53 180
Msa0535040 AT3G43570.1 33.229 319 175 6 32 348 30 312 5.80e-53 178
Msa0535040 AT2G19010.2 33.048 351 211 10 17 363 45 375 1.21e-52 179
Msa0535040 AT4G16230.1 44.105 229 114 5 13 231 5 229 2.61e-52 174
Msa0535040 AT1G73610.1 34.688 320 188 8 32 348 35 336 5.87e-52 176
Msa0535040 AT2G40250.1 31.875 320 204 5 32 343 36 349 8.61e-52 176
Msa0535040 AT5G15720.2 37.545 277 165 5 26 298 24 296 3.15e-51 173
Msa0535040 AT1G20135.1 31.343 335 207 9 17 344 9 327 6.98e-51 173
Msa0535040 AT2G19050.1 33.036 336 199 8 33 363 32 346 1.18e-50 173
Msa0535040 AT1G71691.1 34.843 287 180 6 82 367 3 283 4.26e-50 169
Msa0535040 AT3G14820.1 30.571 350 225 9 14 356 12 350 1.97e-49 170
Msa0535040 AT4G30140.1 33.634 333 201 8 33 364 34 347 3.42e-49 169
Msa0535040 AT2G24560.2 33.803 284 174 7 32 308 34 310 3.82e-48 166
Msa0535040 AT1G53940.2 31.429 350 214 12 32 367 39 376 1.09e-47 166
Msa0535040 AT1G23500.1 31.707 328 202 8 27 350 30 339 2.18e-46 162
Msa0535040 AT3G14225.1 30.484 351 218 10 32 366 37 377 5.47e-46 161
Msa0535040 AT1G71120.1 33.235 340 204 13 32 363 31 355 5.86e-46 161
Msa0535040 AT3G14225.2 30.659 349 216 10 32 366 37 373 8.45e-46 161
Msa0535040 AT1G71691.3 39.015 264 153 7 32 294 55 311 1.66e-45 159
Msa0535040 AT1G75920.2 29.683 347 214 8 15 348 6 335 1.25e-44 157
Msa0535040 AT1G75910.1 30.938 320 206 6 32 348 28 335 1.52e-44 157
Msa0535040 AT1G75930.1 32.492 317 194 8 32 343 29 330 1.56e-44 157
Msa0535040 AT1G53990.1 29.521 376 224 13 13 366 8 364 4.44e-43 154
Msa0535040 AT3G43550.1 33.456 272 169 5 26 294 24 286 2.18e-42 149
Msa0535040 AT1G75920.1 28.453 362 214 9 15 348 1 345 9.19e-41 147
Msa0535040 AT2G19050.2 34.568 243 151 3 33 275 32 266 9.37e-40 142
Msa0535040 AT2G03980.2 30.818 318 202 8 32 342 43 349 6.65e-38 140
Msa0535040 AT2G03980.3 30.818 318 202 8 32 342 43 349 6.65e-38 140
Msa0535040 AT2G03980.1 30.818 318 202 8 32 342 43 349 6.65e-38 140
Msa0535040 AT2G03980.4 30.818 318 202 8 32 342 43 349 6.65e-38 140
Msa0535040 AT1G53920.1 27.949 390 245 12 1 366 7 384 1.19e-36 137
Msa0535040 AT1G75920.3 28.655 342 193 8 15 348 6 304 7.24e-36 133
Msa0535040 AT2G31550.1 32.701 211 135 4 139 346 2 208 7.90e-36 130
Msa0535040 AT1G75920.4 27.852 298 191 7 58 348 27 307 5.73e-34 128
Msa0535040 AT1G56670.1 28.142 366 215 12 12 349 12 357 1.08e-31 123
Msa0535040 AT1G54030.1 29.619 341 209 14 30 366 50 363 9.53e-31 121
Msa0535040 AT1G09390.1 29.086 361 214 12 14 349 11 354 3.07e-29 116
Msa0535040 AT1G53940.1 30.797 276 167 12 32 297 39 300 6.48e-29 114
Msa0535040 AT5G45910.1 29.815 379 215 18 5 350 4 364 3.76e-27 110
Msa0535040 AT3G62280.1 28.363 342 205 13 36 359 40 359 4.54e-27 110
Msa0535040 AT5G14450.1 27.273 374 224 14 9 350 16 373 1.28e-26 109
Msa0535040 AT4G01130.1 26.790 377 221 15 13 354 15 371 6.58e-25 104
Msa0535040 AT1G54790.3 26.984 378 225 14 5 350 6 364 1.19e-24 103
Msa0535040 AT3G26430.1 28.895 353 199 15 32 350 31 365 1.72e-24 103
Msa0535040 AT3G14220.1 25.069 363 243 12 13 365 9 352 9.64e-24 101
Msa0535040 AT3G09930.2 28.060 335 200 14 25 343 32 341 1.24e-23 100
Msa0535040 AT3G09930.1 28.060 335 200 14 25 343 32 341 1.24e-23 100
Msa0535040 AT3G27950.1 27.457 346 206 10 32 351 32 358 1.48e-23 100
Msa0535040 AT3G05180.1 27.794 349 206 13 32 350 36 368 2.68e-23 100
Msa0535040 AT4G16233.1 36.000 125 77 2 240 363 5 127 3.95e-23 94.0
Msa0535040 AT1G54790.1 27.557 352 199 15 34 350 33 363 5.99e-23 99.4
Msa0535040 AT1G31550.2 29.275 386 222 19 12 366 14 379 2.19e-22 97.8
Msa0535040 AT1G67830.1 26.944 360 215 15 25 352 23 366 3.34e-22 97.1
Msa0535040 AT2G04020.1 32.673 202 123 4 32 229 43 235 9.18e-22 94.0
Msa0535040 AT2G04020.2 32.558 215 129 5 32 239 43 248 9.34e-22 95.1
Msa0535040 AT1G54000.1 25.613 367 231 14 15 363 12 354 1.03e-21 95.9
Msa0535040 AT1G54010.1 26.016 369 229 15 15 364 12 355 3.67e-21 94.4
Msa0535040 AT1G28670.1 28.883 367 222 15 12 350 10 365 4.28e-21 94.0
Msa0535040 AT1G56670.2 27.451 306 179 11 12 294 12 297 9.68e-21 91.7
Msa0535040 AT1G28570.1 28.371 356 219 18 31 363 33 375 1.18e-20 92.8
Msa0535040 AT5G03610.1 25.776 322 205 12 34 343 45 344 1.67e-20 92.0
Msa0535040 AT4G16220.1 47.321 112 56 2 13 123 11 120 2.07e-20 89.7
Msa0535040 AT1G28660.1 29.730 370 214 16 12 350 10 364 5.87e-20 90.9
Msa0535040 AT1G54020.2 25.000 348 235 11 21 364 22 347 7.08e-20 90.5
Msa0535040 AT1G28650.1 28.415 366 220 16 14 350 14 366 1.93e-19 89.4
Msa0535040 AT3G14210.1 26.801 347 215 12 32 364 36 357 2.06e-19 89.4
Msa0535040 AT1G28640.1 28.686 373 216 19 12 351 10 365 2.19e-19 89.0
Msa0535040 AT1G54030.2 28.629 248 152 9 30 274 50 275 3.99e-19 87.4
Msa0535040 AT3G48460.1 25.872 344 210 14 34 351 40 364 1.03e-18 87.0
Msa0535040 AT4G01130.3 26.599 297 171 11 93 354 1 285 1.10e-18 85.9
Msa0535040 AT1G54790.2 25.661 378 199 16 34 350 33 389 6.79e-18 85.1
Msa0535040 AT1G28590.1 25.956 366 239 15 7 350 10 365 4.09e-16 79.7
Msa0535040 AT4G01130.2 26.645 304 181 13 13 294 15 298 9.06e-16 77.8
Msa0535040 AT3G62280.2 28.195 266 158 10 36 286 40 287 1.60e-15 76.6
Msa0535040 AT2G36325.1 25.278 360 215 14 9 343 16 346 1.89e-12 68.2

Find 96 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGGATCTTTATGCATTT+TGG 0.100711 4_1:-10847830 Msa0535040:CDS
CATTCCCACCTAAAGTTATT+AGG 0.124247 4_1:+10851071 None:intergenic
CTTCTAACTTGTGCCCTAAT+AGG 0.217615 4_1:-10847848 Msa0535040:CDS
ATTGTATTCTTGAACGTTTA+AGG 0.219399 4_1:-10847597 Msa0535040:three_prime_UTR
AATGCATAAAGATCCCTATT+AGG 0.244612 4_1:+10847834 None:intergenic
AATTCATCATCATTATTATT+AGG 0.246629 4_1:+10847689 None:intergenic
AATCAACTCAATGCTGAAAT+TGG 0.265479 4_1:-10849542 Msa0535040:CDS
ATAAGTGTACTAAGATTATA+TGG 0.279256 4_1:+10847729 None:intergenic
TTTATCAACGATTAGTCTAT+TGG 0.279659 4_1:+10847782 None:intergenic
CACTTATTGCTATGGATTCT+AGG 0.292361 4_1:-10847713 Msa0535040:CDS
ACTGTTTAAAGTATGCTAAT+TGG 0.292401 4_1:+10851161 None:intergenic
CATACAGAATCTATATGAAT+TGG 0.299167 4_1:-10849708 Msa0535040:intron
CGTGCTGATTCATATCCTTA+TGG 0.309899 4_1:-10852501 Msa0535040:CDS
GATGGTGAAAGGTTGCTTAA+TGG 0.313083 4_1:-10852227 Msa0535040:CDS
TCTCAAACTCATAGAGCTTC+TGG 0.319164 4_1:-10852471 Msa0535040:CDS
TCAAGCTCTGGACTCAAATA+TGG 0.322479 4_1:+10852248 None:intergenic
CAATAAACTGCAAAGATCAT+AGG 0.328879 4_1:+10847616 None:intergenic
ATTCCCACCTAAAGTTATTA+GGG 0.330551 4_1:+10851072 None:intergenic
CAAAGGGTTAGTGCACTAAT+TGG 0.330824 4_1:-10851133 Msa0535040:CDS
TGAGTATCGCAAAATTCTTA+TGG 0.332687 4_1:-10850963 Msa0535040:intron
ATTGGGAGCAAGAAGAGTTT+TGG 0.351874 4_1:-10849690 Msa0535040:CDS
GCATTAACCCTAATAACTTT+AGG 0.353703 4_1:-10851079 Msa0535040:CDS
TTCTAACTTGTGCCCTAATA+GGG 0.362728 4_1:-10847847 Msa0535040:CDS
TCACCACTCACTAGCAAGTT+GGG 0.365485 4_1:-10852702 None:intergenic
TTGAAGGAATAATATTCATT+TGG 0.368127 4_1:+10852646 None:intergenic
CTGTTTAAAGTATGCTAATT+GGG 0.373885 4_1:+10851162 None:intergenic
ATGCATAAAGATCCCTATTA+GGG 0.388461 4_1:+10847835 None:intergenic
GCATAGATGAAGACATGATT+AGG 0.388507 4_1:+10849515 None:intergenic
TTAGTGCACTAACCCTTTGC+TGG 0.395839 4_1:+10851137 None:intergenic
TCTAATGCTTCATTCCTATA+GGG 0.402387 4_1:-10847652 Msa0535040:three_prime_UTR
AGGTTGTGTGCCAGCAGAAT+TGG 0.403582 4_1:-10849648 Msa0535040:CDS
AAATGAGCACTCAACTAATA+AGG 0.407140 4_1:+10852418 None:intergenic
ATGCTAATTGGGCAGTAATT+CGG 0.407503 4_1:+10851173 None:intergenic
TTGGCTATGCAAGGAAGAAA+TGG 0.409678 4_1:-10849629 Msa0535040:CDS
AAATGCCTTTGCTATGCATT+TGG 0.417717 4_1:-10849492 Msa0535040:CDS
ATCTAATGCTTCATTCCTAT+AGG 0.432403 4_1:-10847653 Msa0535040:three_prime_UTR
ATGAGGAAGACAACATAATC+AGG 0.437834 4_1:+10850989 None:intergenic
AGTCTATTGGCTCTTTCTGA+TGG 0.442836 4_1:+10847795 None:intergenic
GCTCTTTCTGATGGATGAAA+GGG 0.446836 4_1:+10847804 None:intergenic
TCTTAGTACACTTATTGCTA+TGG 0.450346 4_1:-10847721 Msa0535040:CDS
ATTATATGGGTGCATGTAAT+CGG 0.455255 4_1:+10847743 None:intergenic
TATTTGAGTCCAGAGCTTGA+TGG 0.458469 4_1:-10852245 Msa0535040:CDS
CTCACCACTCACTAGCAAGT+TGG 0.459599 4_1:-10852703 None:intergenic
GGACTCAAATATGGTAATGT+AGG 0.461253 4_1:+10852257 None:intergenic
GGCTCTTTCTGATGGATGAA+AGG 0.468116 4_1:+10847803 None:intergenic
GTCAGGCATGTTGAGGCCAT+TGG 0.468967 4_1:+10852440 None:intergenic
ATCGTTGATAAATTTATGAC+TGG 0.473147 4_1:-10847771 Msa0535040:CDS
AAGAGCATATTCACGAGATC+TGG 0.473248 4_1:+10851012 None:intergenic
GGTTACAACCACGACCCTAT+AGG 0.485545 4_1:+10847638 None:intergenic
ATACAGAATCTATATGAATT+GGG 0.488950 4_1:-10849707 Msa0535040:intron
CATAGTCCAACTCCATTGTA+TGG 0.492410 4_1:+10847879 None:intergenic
CCTTGCATAGCCAATTCTGC+TGG 0.494918 4_1:+10849638 None:intergenic
GCTTCTGGTCGTTTCTCCAA+TGG 0.503907 4_1:-10852456 Msa0535040:CDS
GTTTGAGAATCAATTCCATA+AGG 0.506762 4_1:+10852486 None:intergenic
AACACACAAAGAAATATTGA+AGG 0.510102 4_1:+10852630 None:intergenic
AATAAACTGCAAAGATCATA+GGG 0.521338 4_1:+10847617 None:intergenic
TTAACCCTAATAACTTTAGG+TGG 0.521401 4_1:-10851076 Msa0535040:CDS
CAACTCAATGCTGAAATTGG+TGG 0.521897 4_1:-10849539 Msa0535040:CDS
CTTTAAACAGTACCAGCAAA+GGG 0.526031 4_1:-10851149 Msa0535040:CDS
TTAATCAATTGAACAAGTTG+AGG 0.526832 4_1:+10849563 None:intergenic
TTAGGGCACAAGTTAGAAGC+TGG 0.527870 4_1:+10847852 None:intergenic
GTTAGAGACATTAATTCCAA+TGG 0.529094 4_1:-10852679 Msa0535040:exon
AACCTTTCACCATCAAGCTC+TGG 0.531953 4_1:+10852236 None:intergenic
AGCACTCAACTAATAAGGTC+AGG 0.533862 4_1:+10852423 None:intergenic
TTCACGAGATCTGGCTGAGT+AGG 0.549249 4_1:+10851021 None:intergenic
GCTTCATTCCTATAGGGTCG+TGG 0.549624 4_1:-10847646 Msa0535040:three_prime_UTR
CAAGGACCATACAATGGAGT+TGG 0.550513 4_1:-10847885 Msa0535040:CDS
CAGCACGAGCAGTAGTGGCT+AGG 0.552042 4_1:+10852517 None:intergenic
GTTTCTAATCCACAAGCATA+CGG 0.553825 4_1:-10849464 Msa0535040:intron
GTGACAGGAACGGGACCACT+AGG 0.554470 4_1:-10849668 Msa0535040:CDS
AAACATGCATGTTGTGGTCA+AGG 0.555677 4_1:-10847903 Msa0535040:CDS
GTGTTGATCACCTTGAGCAT+TGG 0.558772 4_1:-10852612 Msa0535040:CDS
TCACGAGATCTGGCTGAGTA+GGG 0.559568 4_1:+10851022 None:intergenic
TGAATCAGCACGAGCAGTAG+TGG 0.564727 4_1:+10852512 None:intergenic
TTGTTGAACACCAATGCTCA+AGG 0.567686 4_1:+10852602 None:intergenic
GGAAATATACCGTATGCTTG+TGG 0.571755 4_1:+10849455 None:intergenic
ACTTTAAACAGTACCAGCAA+AGG 0.571949 4_1:-10851150 Msa0535040:CDS
TGTGTTTGGTGATTCTCTTG+TGG 0.575556 4_1:-10852559 Msa0535040:CDS
AAGTTATTAGGGTTAATGCT+TGG 0.575775 4_1:+10851083 None:intergenic
TAAGTGTACTAAGATTATAT+GGG 0.583474 4_1:+10847730 None:intergenic
AAGTTAGTAGCTGTTTGAAG+AGG 0.588986 4_1:+10849593 None:intergenic
CTCTTTCTGATGGATGAAAG+GGG 0.589840 4_1:+10847805 None:intergenic
GGTGATTCTCTTGTGGACAA+TGG 0.593184 4_1:-10852552 Msa0535040:CDS
CCAGCAGAATTGGCTATGCA+AGG 0.594783 4_1:-10849638 Msa0535040:CDS
TAACCCTAATAACTTTAGGT+GGG 0.599439 4_1:-10851075 Msa0535040:CDS
ATTGGAATTCTCAATGACAC+TGG 0.602237 4_1:-10852182 Msa0535040:CDS
GTCCAGAGCTTGATGGTGAA+AGG 0.614928 4_1:-10852238 Msa0535040:CDS
GAAATCCAAATGCATAGCAA+AGG 0.615273 4_1:+10849487 None:intergenic
TAATAAGGTCAGGCATGTTG+AGG 0.615842 4_1:+10852433 None:intergenic
TGCACTAATTGGAGAAAGTG+AGG 0.617026 4_1:-10851122 Msa0535040:CDS
CACCACTCACTAGCAAGTTG+GGG 0.623635 4_1:-10852701 None:intergenic
CAAGGAAGAAATGGAGAGTG+TGG 0.633620 4_1:-10849620 Msa0535040:CDS
ACATCAAAACATGCATGTTG+TGG 0.666826 4_1:-10847909 Msa0535040:CDS
TGTGGTCAAGGACCATACAA+TGG 0.678040 4_1:-10847891 Msa0535040:CDS
TCTGCTGGCACACAACCTAG+TGG 0.689336 4_1:+10849653 None:intergenic
ATTGAGAATTCCAATCCCAG+CGG 0.771559 4_1:+10852190 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCTTTTTTTTTTTTTTG+AGG - chr4_1:10848707-10848726 Msa0535040:intron 10.0%
!!! TTTCTTTTTTTTTTTTTTGA+GGG - chr4_1:10848708-10848727 Msa0535040:intron 10.0%
!!! CTTTTTTTATATTTAAGATT+AGG + chr4_1:10848791-10848810 None:intergenic 10.0%
!! CAAAAAAAATAAATATTAGT+AGG + chr4_1:10849595-10849614 None:intergenic 10.0%
!!! TTTTTTTTTTTTGAAATGTT+GGG + chr4_1:10850031-10850050 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGAAATGT+TGG + chr4_1:10850032-10850051 None:intergenic 10.0%
!!! ATGAAATTTTTTTTTTTATG+AGG - chr4_1:10850198-10850217 Msa0535040:intron 10.0%
!!! TGAAATTTTTTTTTTTATGA+GGG - chr4_1:10850199-10850218 Msa0535040:intron 10.0%
!! ATAATATAATAATTGATGTA+CGG + chr4_1:10850435-10850454 None:intergenic 10.0%
!!! ACTTAATAACATTTTATTTT+AGG + chr4_1:10851470-10851489 None:intergenic 10.0%
!! AAAAAAAAAAAAAAACTTGT+AGG - chr4_1:10851571-10851590 Msa0535040:intron 10.0%
!! TTGAATATAAATTCATTATA+TGG + chr4_1:10851634-10851653 None:intergenic 10.0%
!! AAATCTATATAATACATATA+TGG + chr4_1:10851784-10851803 None:intergenic 10.0%
!!! TTTCATCTAATGTATTTTTT+AGG - chr4_1:10847876-10847895 Msa0535040:CDS 15.0%
!!! TTCATCTAATGTATTTTTTA+GGG - chr4_1:10847877-10847896 Msa0535040:CDS 15.0%
!!! GATATATTTCAAATTTTTAG+TGG + chr4_1:10848445-10848464 None:intergenic 15.0%
!!! AAGACATGAAAATAAATTTT+TGG - chr4_1:10848469-10848488 Msa0535040:intron 15.0%
!! TCATTACACATATAAATTTA+GGG + chr4_1:10848940-10848959 None:intergenic 15.0%
!! TTCATTACACATATAAATTT+AGG + chr4_1:10848941-10848960 None:intergenic 15.0%
!! TTAGATAATTAGATACAAAT+AGG + chr4_1:10848999-10849018 None:intergenic 15.0%
!! AATGATGAAAATTAAACAAA+GGG + chr4_1:10849303-10849322 None:intergenic 15.0%
!! AAATGATGAAAATTAAACAA+AGG + chr4_1:10849304-10849323 None:intergenic 15.0%
!!! TTCAACTGTTTTTATATATA+TGG + chr4_1:10849505-10849524 None:intergenic 15.0%
!! TATATATAAAAACAGTTGAA+TGG - chr4_1:10849505-10849524 Msa0535040:CDS 15.0%
!!! TTTTATAAGGAAAATACTAT+AGG + chr4_1:10849569-10849588 None:intergenic 15.0%
!!! TATTAGTAGGTTTTTTTATA+AGG + chr4_1:10849582-10849601 None:intergenic 15.0%
!! TTAGCTATATAGTTAATAAA+AGG - chr4_1:10849678-10849697 Msa0535040:CDS 15.0%
!! TAGCTATATAGTTAATAAAA+GGG - chr4_1:10849679-10849698 Msa0535040:CDS 15.0%
!!! AGAAGCTTTTTTATTTTTTT+TGG + chr4_1:10849971-10849990 None:intergenic 15.0%
!!! ATCTATTTTATTTCAATATG+TGG - chr4_1:10850098-10850117 Msa0535040:intron 15.0%
!!! ATGTGGATTTTAATATTAAT+CGG + chr4_1:10850335-10850354 None:intergenic 15.0%
!!! TTTTACTATATGGTTATATT+TGG + chr4_1:10850369-10850388 None:intergenic 15.0%
!!! AATTCAACATTTTTACTATA+TGG + chr4_1:10850379-10850398 None:intergenic 15.0%
!! ATATATTACTACTACATATT+AGG + chr4_1:10852070-10852089 None:intergenic 15.0%
!!! TTTTTGTTTTTTATATATGC+AGG - chr4_1:10852278-10852297 Msa0535040:CDS 15.0%
!! AATTCATCATCATTATTATT+AGG + chr4_1:10852531-10852550 None:intergenic 15.0%
!! ATGATGAATTTAAAAAATCT+AGG - chr4_1:10852541-10852560 Msa0535040:CDS 15.0%
!! TTGAAGGAATAATATTCATT+TGG + chr4_1:10847574-10847593 None:intergenic 20.0%
!! CTATAAATTATGAATGTGAT+AGG - chr4_1:10847918-10847937 Msa0535040:CDS 20.0%
!!! ATTTTTGGATCATACATATA+AGG - chr4_1:10848484-10848503 Msa0535040:intron 20.0%
!! TCGATAAAAGTTTATGTATT+TGG - chr4_1:10848863-10848882 Msa0535040:intron 20.0%
!!! TTTTGTGAACAACTATTATT+TGG - chr4_1:10849170-10849189 Msa0535040:intron 20.0%
!! ATATTAAGAGTAATGTTAAC+CGG + chr4_1:10849860-10849879 None:intergenic 20.0%
!!! TTTTTTATTTTTTTTGGTGG+TGG + chr4_1:10849965-10849984 None:intergenic 20.0%
!!! AGCTTTTTTATTTTTTTTGG+TGG + chr4_1:10849968-10849987 None:intergenic 20.0%
!!! ACATTATCTTTAGAAATGTT+GGG + chr4_1:10850069-10850088 None:intergenic 20.0%
!!! AACATTATCTTTAGAAATGT+TGG + chr4_1:10850070-10850089 None:intergenic 20.0%
!!! TTTTTTTATGAGGGTTAATT+AGG - chr4_1:10850208-10850227 Msa0535040:intron 20.0%
!!! GGAATTAAATGTGTTTTTTT+TGG - chr4_1:10850229-10850248 Msa0535040:intron 20.0%
!! TAGATGAGTTAATTAATGTT+TGG - chr4_1:10850257-10850276 Msa0535040:intron 20.0%
!! ATTCAATGTTATAACACAAT+TGG + chr4_1:10850483-10850502 None:intergenic 20.0%
!! ATACAGAATCTATATGAATT+GGG - chr4_1:10850510-10850529 Msa0535040:intron 20.0%
!! GTATATTTCCAATCTTAATT+TGG - chr4_1:10850775-10850794 Msa0535040:intron 20.0%
!! AAGTTTAACCAAATTAAGAT+TGG + chr4_1:10850786-10850805 None:intergenic 20.0%
!! AAACACAAATATTCATCTAT+TGG - chr4_1:10850843-10850862 Msa0535040:intron 20.0%
!! TATGCTAGATTTAAATTGTT+AGG - chr4_1:10850900-10850919 Msa0535040:intron 20.0%
!!! TAATTAATATGTTTAGCTCT+TGG - chr4_1:10851006-10851025 Msa0535040:CDS 20.0%
!! TTGATCTACTTTACATTTAA+TGG + chr4_1:10851109-10851128 None:intergenic 20.0%
!! AAAGTAGATCAATTATGATT+AGG - chr4_1:10851117-10851136 Msa0535040:CDS 20.0%
!! AAGTAGATCAATTATGATTA+GGG - chr4_1:10851118-10851137 Msa0535040:CDS 20.0%
!! GATTCAAATACTATGAAAAA+AGG + chr4_1:10851212-10851231 None:intergenic 20.0%
!!! TACTCAAACAAAAGTATATA+GGG + chr4_1:10851247-10851266 None:intergenic 20.0%
!!! ATACTCAAACAAAAGTATAT+AGG + chr4_1:10851248-10851267 None:intergenic 20.0%
!! TTTGCAAAATCACAAAATAA+TGG + chr4_1:10851677-10851696 None:intergenic 20.0%
!! TGAATTTGTCGTAATTATAA+TGG - chr4_1:10851725-10851744 Msa0535040:intron 20.0%
!! TACTATATATTGAACCATAT+AGG + chr4_1:10851923-10851942 None:intergenic 20.0%
!! TAAGTGTACTAAGATTATAT+GGG + chr4_1:10852490-10852509 None:intergenic 20.0%
!! ATAAGTGTACTAAGATTATA+TGG + chr4_1:10852491-10852510 None:intergenic 20.0%
!!! ATTTGGTTTTTTTGTTCCAT+TGG + chr4_1:10847557-10847576 None:intergenic 25.0%
! AACACACAAAGAAATATTGA+AGG + chr4_1:10847590-10847609 None:intergenic 25.0%
! AATACATTAGATGAAAGCTA+GGG + chr4_1:10847872-10847891 None:intergenic 25.0%
! AAATACATTAGATGAAAGCT+AGG + chr4_1:10847873-10847892 None:intergenic 25.0%
!!! TAGGGCATGTTTTAATTAAT+TGG - chr4_1:10847895-10847914 Msa0535040:CDS 25.0%
! AATGTGATAGGTGAAAAAAT+TGG - chr4_1:10847930-10847949 Msa0535040:intron 25.0%
! ATGTGATAGGTGAAAAAATT+GGG - chr4_1:10847931-10847950 Msa0535040:intron 25.0%
!! AAAGTAGAATTTTCCTTTCA+CGG - chr4_1:10848114-10848133 Msa0535040:intron 25.0%
! TAGTATAAGATATGGAGTTT+AGG + chr4_1:10848180-10848199 None:intergenic 25.0%
! TGTAGCAATAGTATAAGATA+TGG + chr4_1:10848188-10848207 None:intergenic 25.0%
!! CTGTTTAAAGTATGCTAATT+GGG + chr4_1:10849058-10849077 None:intergenic 25.0%
!! ACTGTTTAAAGTATGCTAAT+TGG + chr4_1:10849059-10849078 None:intergenic 25.0%
!!! ATTGTTACATCACACTTTTT+GGG - chr4_1:10849432-10849451 Msa0535040:intron 25.0%
! GACTTTGACCAAATATATTA+GGG + chr4_1:10849481-10849500 None:intergenic 25.0%
! TGACTTTGACCAAATATATT+AGG + chr4_1:10849482-10849501 None:intergenic 25.0%
! TGAGTAAAGAACCTTTAAAT+TGG - chr4_1:10849617-10849636 Msa0535040:CDS 25.0%
! GAGTAAAGAACCTTTAAATT+GGG - chr4_1:10849618-10849637 Msa0535040:CDS 25.0%
! AATAAAAGGGTTATGTTAAC+CGG - chr4_1:10849692-10849711 Msa0535040:CDS 25.0%
! CAAATATAGTAACATCACAT+TGG + chr4_1:10849811-10849830 None:intergenic 25.0%
! AACAATGCATAATATATGCA+AGG - chr4_1:10849920-10849939 Msa0535040:intron 25.0%
! TACTATATGGTTATATTTGG+TGG + chr4_1:10850366-10850385 None:intergenic 25.0%
! ATAATAATTGATGTACGGAT+TGG + chr4_1:10850430-10850449 None:intergenic 25.0%
! CATACAGAATCTATATGAAT+TGG - chr4_1:10850509-10850528 Msa0535040:intron 25.0%
! TTAATCAATTGAACAAGTTG+AGG + chr4_1:10850657-10850676 None:intergenic 25.0%
! TAGATTTAAATTGTTAGGTC+CGG - chr4_1:10850905-10850924 Msa0535040:intron 25.0%
! ATTAGATTATCCTAAGATCT+TGG - chr4_1:10851044-10851063 Msa0535040:CDS 25.0%
! TTAGATTATCCTAAGATCTT+GGG - chr4_1:10851045-10851064 Msa0535040:CDS 25.0%
! AGTAGATCAATTATGATTAG+GGG - chr4_1:10851119-10851138 Msa0535040:CDS 25.0%
! TGAGTTAGTATCAAATTGAT+CGG + chr4_1:10851166-10851185 None:intergenic 25.0%
! GTTCAAGTGTCATAATTTAA+AGG - chr4_1:10851415-10851434 Msa0535040:intron 25.0%
!! TATATTTTCTTGAACGAGTT+GGG + chr4_1:10851605-10851624 None:intergenic 25.0%
! AACATAATCCATTTGAATAG+TGG + chr4_1:10851991-10852010 None:intergenic 25.0%
! TATGTTGCAATCATGTTAAA+TGG - chr4_1:10852005-10852024 Msa0535040:intron 25.0%
! TTACTACTACATATTAGGAA+TGG + chr4_1:10852065-10852084 None:intergenic 25.0%
!!! AAATGTTTTTTCAATGAGCA+TGG + chr4_1:10852118-10852137 None:intergenic 25.0%
! ACCTAAACATCTAAGAAAAT+AGG - chr4_1:10852147-10852166 Msa0535040:intron 25.0%
!! ACCTATTTTCTTAGATGTTT+AGG + chr4_1:10852151-10852170 None:intergenic 25.0%
!!! TTTTTTCCACAAACTTTTGT+TGG - chr4_1:10852174-10852193 Msa0535040:CDS 25.0%
!!! TTTATCAACGATTAGTCTAT+TGG + chr4_1:10852438-10852457 None:intergenic 25.0%
!! ATCGTTGATAAATTTATGAC+TGG - chr4_1:10852446-10852465 Msa0535040:CDS 25.0%
! AATAAACTGCAAAGATCATA+GGG + chr4_1:10852603-10852622 None:intergenic 25.0%
! ATTGTATTCTTGAACGTTTA+AGG - chr4_1:10852620-10852639 Msa0535040:CDS 25.0%
!!! AAATGAGTTTTGTTGTTAAG+TGG - chr4_1:10852669-10852688 Msa0535040:exon 25.0%
GTTAGAGACATTAATTCCAA+TGG - chr4_1:10847538-10847557 Msa0535040:three_prime_UTR 30.0%
GTTTGAGAATCAATTCCATA+AGG + chr4_1:10847734-10847753 None:intergenic 30.0%
AAATGAGCACTCAACTAATA+AGG + chr4_1:10847802-10847821 None:intergenic 30.0%
TAGATCCTCTCATTTATTAG+AGG + chr4_1:10848565-10848584 None:intergenic 30.0%
AAGTTATTAGGGTTAATGCT+TGG + chr4_1:10849137-10849156 None:intergenic 30.0%
GCATTAACCCTAATAACTTT+AGG - chr4_1:10849138-10849157 Msa0535040:intron 30.0%
TTAACCCTAATAACTTTAGG+TGG - chr4_1:10849141-10849160 Msa0535040:intron 30.0%
TAACCCTAATAACTTTAGGT+GGG - chr4_1:10849142-10849161 Msa0535040:intron 30.0%
ATTCCCACCTAAAGTTATTA+GGG + chr4_1:10849148-10849167 None:intergenic 30.0%
! TGAGTATCGCAAAATTCTTA+TGG - chr4_1:10849254-10849273 Msa0535040:intron 30.0%
! TAAACAAAGGGAAGTACATA+AGG + chr4_1:10849291-10849310 None:intergenic 30.0%
! CATTGTTACATCACACTTTT+TGG - chr4_1:10849431-10849450 Msa0535040:intron 30.0%
!!! CACTTTTTGGGTCATAATAT+AGG - chr4_1:10849444-10849463 Msa0535040:intron 30.0%
TGTATCAAAGCCCAATTTAA+AGG + chr4_1:10849631-10849650 None:intergenic 30.0%
ATGTAACGGTAAGATTCAAT+TGG - chr4_1:10850285-10850304 Msa0535040:intron 30.0%
! TATATGGTTATATTTGGTGG+TGG + chr4_1:10850363-10850382 None:intergenic 30.0%
!! TACGGATTGGAAAAAATAGA+GGG + chr4_1:10850417-10850436 None:intergenic 30.0%
ACACAATTGGTATGAATTGT+TGG + chr4_1:10850470-10850489 None:intergenic 30.0%
AATCAACTCAATGCTGAAAT+TGG - chr4_1:10850675-10850694 Msa0535040:intron 30.0%
!! TTAATATGTTTAGCTCTTGG+TGG - chr4_1:10851009-10851028 Msa0535040:CDS 30.0%
TTTGACTAAGTGTAGCTATT+AGG - chr4_1:10851081-10851100 Msa0535040:CDS 30.0%
!! AAAGTATATAGGGTTAGTCT+AGG + chr4_1:10851237-10851256 None:intergenic 30.0%
! GTCACAATGAGTTGAATTTA+TGG + chr4_1:10851293-10851312 None:intergenic 30.0%
ACTCATTGTGACACAAATTA+TGG - chr4_1:10851301-10851320 Msa0535040:intron 30.0%
GACACAAATTATGGATTTCT+TGG - chr4_1:10851310-10851329 Msa0535040:intron 30.0%
!! GTGTAATGTAAGTGTTGAAT+AGG - chr4_1:10851375-10851394 Msa0535040:intron 30.0%
! CTATATTTTCTTGAACGAGT+TGG + chr4_1:10851606-10851625 None:intergenic 30.0%
ACACCATTAGAAAAGTAAGA+TGG - chr4_1:10851848-10851867 Msa0535040:intron 30.0%
AATAATAGTCAAGATTCCAC+TGG - chr4_1:10852091-10852110 Msa0535040:intron 30.0%
ATGCATAAAGATCCCTATTA+GGG + chr4_1:10852385-10852404 None:intergenic 30.0%
AATGCATAAAGATCCCTATT+AGG + chr4_1:10852386-10852405 None:intergenic 30.0%
! ATAGGGATCTTTATGCATTT+TGG - chr4_1:10852387-10852406 Msa0535040:intron 30.0%
! TAGGGATCTTTATGCATTTT+GGG - chr4_1:10852388-10852407 Msa0535040:intron 30.0%
ATTATATGGGTGCATGTAAT+CGG + chr4_1:10852477-10852496 None:intergenic 30.0%
TCTTAGTACACTTATTGCTA+TGG - chr4_1:10852496-10852515 Msa0535040:CDS 30.0%
ATCTAATGCTTCATTCCTAT+AGG - chr4_1:10852564-10852583 Msa0535040:CDS 30.0%
TCTAATGCTTCATTCCTATA+GGG - chr4_1:10852565-10852584 Msa0535040:CDS 30.0%
CAATAAACTGCAAAGATCAT+AGG + chr4_1:10852604-10852623 None:intergenic 30.0%
!!! GCAAGAGCATTTTTTGTGTT+TGG - chr4_1:10847644-10847663 Msa0535040:three_prime_UTR 35.0%
! GGACTCAAATATGGTAATGT+AGG + chr4_1:10847963-10847982 None:intergenic 35.0%
ATTGGAATTCTCAATGACAC+TGG - chr4_1:10848035-10848054 Msa0535040:intron 35.0%
TGTGACCTCTAATAAATGAG+AGG - chr4_1:10848557-10848576 Msa0535040:intron 35.0%
GCAATTACATTTAGCACACA+TGG + chr4_1:10848601-10848620 None:intergenic 35.0%
!! CTCAAAGTTTTGTACACGTA+CGG + chr4_1:10848655-10848674 None:intergenic 35.0%
AGGGATAACTTATCAAACTG+TGG - chr4_1:10848727-10848746 Msa0535040:intron 35.0%
ATGCTAATTGGGCAGTAATT+CGG + chr4_1:10849047-10849066 None:intergenic 35.0%
ACTTTAAACAGTACCAGCAA+AGG - chr4_1:10849067-10849086 Msa0535040:intron 35.0%
CTTTAAACAGTACCAGCAAA+GGG - chr4_1:10849068-10849087 Msa0535040:intron 35.0%
CATTCCCACCTAAAGTTATT+AGG + chr4_1:10849149-10849168 None:intergenic 35.0%
ATGAGGAAGACAACATAATC+AGG + chr4_1:10849231-10849250 None:intergenic 35.0%
! TTTTGCGATACTCAGAAATG+AGG + chr4_1:10849248-10849267 None:intergenic 35.0%
! AAAGGGAAGTACATAAGGAT+AGG + chr4_1:10849286-10849305 None:intergenic 35.0%
CTCCTAAGCCCTAATATATT+TGG - chr4_1:10849470-10849489 Msa0535040:CDS 35.0%
GACCAAATATATTAGGGCTT+AGG + chr4_1:10849475-10849494 None:intergenic 35.0%
GGTAAGAACACATTCAAAGT+TGG - chr4_1:10849526-10849545 Msa0535040:CDS 35.0%
ACTATATTTGCTTCCGTAAC+CGG - chr4_1:10849821-10849840 Msa0535040:intron 35.0%
TGCATAATATATGCAAGGTC+TGG - chr4_1:10849925-10849944 Msa0535040:intron 35.0%
!!! TTATTTTTTTTGGTGGTGGC+CGG + chr4_1:10849961-10849980 None:intergenic 35.0%
AATGTTTGGCAAGCATGTAA+CGG - chr4_1:10850271-10850290 Msa0535040:intron 35.0%
TGTTGAAAGCAGCACATATT+AGG - chr4_1:10850309-10850328 Msa0535040:intron 35.0%
!! GTACGGATTGGAAAAAATAG+AGG + chr4_1:10850418-10850437 None:intergenic 35.0%
AAGTTAGTAGCTGTTTGAAG+AGG + chr4_1:10850627-10850646 None:intergenic 35.0%
GCATAGATGAAGACATGATT+AGG + chr4_1:10850705-10850724 None:intergenic 35.0%
! AAATGCCTTTGCTATGCATT+TGG - chr4_1:10850725-10850744 Msa0535040:intron 35.0%
GAAATCCAAATGCATAGCAA+AGG + chr4_1:10850733-10850752 None:intergenic 35.0%
GTTTCTAATCCACAAGCATA+CGG - chr4_1:10850753-10850772 Msa0535040:intron 35.0%
! AAAAGTTTGTTCCCTACCTA+GGG - chr4_1:10850968-10850987 Msa0535040:CDS 35.0%
! CTCATTCGATTCAAAGTGTT+TGG - chr4_1:10851182-10851201 Msa0535040:CDS 35.0%
! TTCGATTCAAAGTGTTTGGT+TGG - chr4_1:10851186-10851205 Msa0535040:CDS 35.0%
TGTGAATGTAGCTTAAGACA+TGG - chr4_1:10851344-10851363 Msa0535040:intron 35.0%
TGGTAGTCGTCTACATTAAT+GGG + chr4_1:10851657-10851676 None:intergenic 35.0%
ATGGTAGTCGTCTACATTAA+TGG + chr4_1:10851658-10851677 None:intergenic 35.0%
!!! CTTTTCTAATGGTGTTACAG+TGG + chr4_1:10851843-10851862 None:intergenic 35.0%
!! TGGCCATCTTACTTTTCTAA+TGG + chr4_1:10851854-10851873 None:intergenic 35.0%
ATCCATTTGAATAGTGGTTG+TGG + chr4_1:10851985-10852004 None:intergenic 35.0%
TGCAATCATGTTAAATGGTG+TGG - chr4_1:10852010-10852029 Msa0535040:intron 35.0%
GCAATCATGTTAAATGGTGT+GGG - chr4_1:10852011-10852030 Msa0535040:intron 35.0%
CAATCATGTTAAATGGTGTG+GGG - chr4_1:10852012-10852031 Msa0535040:intron 35.0%
AATCATGTTAAATGGTGTGG+GGG - chr4_1:10852013-10852032 Msa0535040:intron 35.0%
ACTATGCCAACAAAAGTTTG+TGG + chr4_1:10852183-10852202 None:intergenic 35.0%
ACATCAAAACATGCATGTTG+TGG - chr4_1:10852308-10852327 Msa0535040:intron 35.0%
! TTCTAACTTGTGCCCTAATA+GGG - chr4_1:10852370-10852389 Msa0535040:intron 35.0%
CACTTATTGCTATGGATTCT+AGG - chr4_1:10852504-10852523 Msa0535040:CDS 35.0%
TTGTTGAACACCAATGCTCA+AGG + chr4_1:10847618-10847637 None:intergenic 40.0%
! TGTGTTTGGTGATTCTCTTG+TGG - chr4_1:10847658-10847677 Msa0535040:three_prime_UTR 40.0%
!! CGTGCTGATTCATATCCTTA+TGG - chr4_1:10847716-10847735 Msa0535040:CDS 40.0%
TCTCAAACTCATAGAGCTTC+TGG - chr4_1:10847746-10847765 Msa0535040:CDS 40.0%
TAATAAGGTCAGGCATGTTG+AGG + chr4_1:10847787-10847806 None:intergenic 40.0%
AGCACTCAACTAATAAGGTC+AGG + chr4_1:10847797-10847816 None:intergenic 40.0%
!! TCAAGCTCTGGACTCAAATA+TGG + chr4_1:10847972-10847991 None:intergenic 40.0%
TATTTGAGTCCAGAGCTTGA+TGG - chr4_1:10847972-10847991 Msa0535040:intron 40.0%
GATGGTGAAAGGTTGCTTAA+TGG - chr4_1:10847990-10848009 Msa0535040:intron 40.0%
ATTGAGAATTCCAATCCCAG+CGG + chr4_1:10848030-10848049 None:intergenic 40.0%
ATTGCTGTGTTAACCGTGAA+AGG + chr4_1:10848130-10848149 None:intergenic 40.0%
ACTTATCAAACTGTGGCTAG+TGG - chr4_1:10848734-10848753 Msa0535040:intron 40.0%
CTTATCAAACTGTGGCTAGT+GGG - chr4_1:10848735-10848754 Msa0535040:intron 40.0%
! CAAAGGGTTAGTGCACTAAT+TGG - chr4_1:10849084-10849103 Msa0535040:intron 40.0%
TGCACTAATTGGAGAAAGTG+AGG - chr4_1:10849095-10849114 Msa0535040:intron 40.0%
! AAGAGCATATTCACGAGATC+TGG + chr4_1:10849208-10849227 None:intergenic 40.0%
TTTCCTTAACCAATGCTCCA+GGG + chr4_1:10849721-10849740 None:intergenic 40.0%
! AAGGTCTGGAGTTAAAATCC+CGG - chr4_1:10849939-10849958 Msa0535040:intron 40.0%
!!! TATTTTTTTTGGTGGTGGCC+GGG + chr4_1:10849960-10849979 None:intergenic 40.0%
!! ATTTGGTGGTGGACTTTATG+TGG + chr4_1:10850352-10850371 None:intergenic 40.0%
! ATTGGGAGCAAGAAGAGTTT+TGG - chr4_1:10850527-10850546 Msa0535040:intron 40.0%
!! AAGAGTTTTGGTGACAGGAA+CGG - chr4_1:10850539-10850558 Msa0535040:intron 40.0%
TTGGCTATGCAAGGAAGAAA+TGG - chr4_1:10850588-10850607 Msa0535040:intron 40.0%
CAACTCAATGCTGAAATTGG+TGG - chr4_1:10850678-10850697 Msa0535040:intron 40.0%
GGAAATATACCGTATGCTTG+TGG + chr4_1:10850765-10850784 None:intergenic 40.0%
GCTTCTAACTAACATGACCA+GGG + chr4_1:10850931-10850950 None:intergenic 40.0%
TGCTTCTAACTAACATGACC+AGG + chr4_1:10850932-10850951 None:intergenic 40.0%
! CTAGGTAGGGAACAAACTTT+TGG + chr4_1:10850969-10850988 None:intergenic 40.0%
! CAAAAGTTTGTTCCCTACCT+AGG - chr4_1:10850967-10850986 Msa0535040:CDS 40.0%
TAAAGACCAAACCCTAGGTA+GGG + chr4_1:10850982-10851001 None:intergenic 40.0%
ATAAAGACCAAACCCTAGGT+AGG + chr4_1:10850983-10851002 None:intergenic 40.0%
AGACATAAAGACCAAACCCT+AGG + chr4_1:10850987-10851006 None:intergenic 40.0%
ATCCTAAGATCTTGGGATAG+TGG - chr4_1:10851052-10851071 Msa0535040:CDS 40.0%
ATCCACTATCCCAAGATCTT+AGG + chr4_1:10851057-10851076 None:intergenic 40.0%
ATCGAAGATATTGCGTGGTT+AGG + chr4_1:10851545-10851564 None:intergenic 40.0%
GTCAAATCGAAGATATTGCG+TGG + chr4_1:10851550-10851569 None:intergenic 40.0%
TAGAAAAGTAAGATGGCCAC+CGG - chr4_1:10851855-10851874 Msa0535040:intron 40.0%
GTCCACAACCACTATTCAAA+TGG - chr4_1:10851980-10851999 Msa0535040:intron 40.0%
!! TGTGGGGGAAATTGACTTTT+GGG - chr4_1:10852028-10852047 Msa0535040:intron 40.0%
!! AATTGACTTTTGGGGACCAA+AGG - chr4_1:10852037-10852056 Msa0535040:intron 40.0%
!! ATTGACTTTTGGGGACCAAA+GGG - chr4_1:10852038-10852057 Msa0535040:intron 40.0%
CATATTAGGAATGGTCCCTT+TGG + chr4_1:10852056-10852075 None:intergenic 40.0%
AAACATGCATGTTGTGGTCA+AGG - chr4_1:10852314-10852333 Msa0535040:intron 40.0%
CATAGTCCAACTCCATTGTA+TGG + chr4_1:10852341-10852360 None:intergenic 40.0%
! CTTCTAACTTGTGCCCTAAT+AGG - chr4_1:10852369-10852388 Msa0535040:intron 40.0%
! CTCTTTCTGATGGATGAAAG+GGG + chr4_1:10852415-10852434 None:intergenic 40.0%
! GCTCTTTCTGATGGATGAAA+GGG + chr4_1:10852416-10852435 None:intergenic 40.0%
!! AGTCTATTGGCTCTTTCTGA+TGG + chr4_1:10852425-10852444 None:intergenic 40.0%
! GTGTTGATCACCTTGAGCAT+TGG - chr4_1:10847605-10847624 Msa0535040:three_prime_UTR 45.0%
GGTGATTCTCTTGTGGACAA+TGG - chr4_1:10847665-10847684 Msa0535040:three_prime_UTR 45.0%
AACCTTTCACCATCAAGCTC+TGG + chr4_1:10847984-10848003 None:intergenic 45.0%
! GTGCTAATTTTGCTTCCGCT+GGG - chr4_1:10848012-10848031 Msa0535040:intron 45.0%
! AATTTTGCTTCCGCTGGGAT+TGG - chr4_1:10848017-10848036 Msa0535040:intron 45.0%
TTAGTGCACTAACCCTTTGC+TGG + chr4_1:10849083-10849102 None:intergenic 45.0%
TTCCTTAACCAATGCTCCAG+GGG + chr4_1:10849720-10849739 None:intergenic 45.0%
GTTTCCTTAACCAATGCTCC+AGG + chr4_1:10849722-10849741 None:intergenic 45.0%
CCAACTGAGCTAAGCTCAAA+AGG + chr4_1:10849897-10849916 None:intergenic 45.0%
! CCTTTTGAGCTTAGCTCAGT+TGG - chr4_1:10849894-10849913 Msa0535040:intron 45.0%
!! GCAAGAAGAGTTTTGGTGAC+AGG - chr4_1:10850534-10850553 Msa0535040:intron 45.0%
!! AGAGTTTTGGTGACAGGAAC+GGG - chr4_1:10850540-10850559 Msa0535040:intron 45.0%
CAAGGAAGAAATGGAGAGTG+TGG - chr4_1:10850597-10850616 Msa0535040:intron 45.0%
TTTGTTCCCTACCTAGGGTT+TGG - chr4_1:10850973-10850992 Msa0535040:CDS 45.0%
!! ATGTTTAGCTCTTGGTGGCT+AGG - chr4_1:10851014-10851033 Msa0535040:CDS 45.0%
GTGGTTAGGTTTGAGTCAAG+TGG + chr4_1:10851531-10851550 None:intergenic 45.0%
! TGAATAGTGGTTGTGGACTG+TGG + chr4_1:10851978-10851997 None:intergenic 45.0%
!! GTGTGGGGGAAATTGACTTT+TGG - chr4_1:10852027-10852046 Msa0535040:intron 45.0%
!! GTGGGGGAAATTGACTTTTG+GGG - chr4_1:10852029-10852048 Msa0535040:intron 45.0%
TTTCAATGAGCATGGTCCAG+TGG + chr4_1:10852110-10852129 None:intergenic 45.0%
TGTGGTCAAGGACCATACAA+TGG - chr4_1:10852326-10852345 Msa0535040:intron 45.0%
CAAGGACCATACAATGGAGT+TGG - chr4_1:10852332-10852351 Msa0535040:intron 45.0%
TTAGGGCACAAGTTAGAAGC+TGG + chr4_1:10852368-10852387 None:intergenic 45.0%
! GGCTCTTTCTGATGGATGAA+AGG + chr4_1:10852417-10852436 None:intergenic 45.0%
TGAATCAGCACGAGCAGTAG+TGG + chr4_1:10847708-10847727 None:intergenic 50.0%
GCTTCTGGTCGTTTCTCCAA+TGG - chr4_1:10847761-10847780 Msa0535040:CDS 50.0%
!! GTCCAGAGCTTGATGGTGAA+AGG - chr4_1:10847979-10847998 Msa0535040:intron 50.0%
! GGTGCTAATTTTGCTTCCGC+TGG - chr4_1:10848011-10848030 Msa0535040:intron 50.0%
TCACGAGATCTGGCTGAGTA+GGG + chr4_1:10849198-10849217 None:intergenic 50.0%
TTCACGAGATCTGGCTGAGT+AGG + chr4_1:10849199-10849218 None:intergenic 50.0%
AGGTTGTGTGCCAGCAGAAT+TGG - chr4_1:10850569-10850588 Msa0535040:intron 50.0%
CCTTGCATAGCCAATTCTGC+TGG + chr4_1:10850582-10850601 None:intergenic 50.0%
CCAGCAGAATTGGCTATGCA+AGG - chr4_1:10850579-10850598 Msa0535040:intron 50.0%
TAAATTGTTAGGTCCGGCCC+TGG - chr4_1:10850911-10850930 Msa0535040:intron 50.0%
CTAACTAACATGACCAGGGC+CGG + chr4_1:10850927-10850946 None:intergenic 50.0%
!! ATTAGGGGTGCTTGTGCAGA+TGG - chr4_1:10851134-10851153 Msa0535040:CDS 50.0%
!! TTAGGGGTGCTTGTGCAGAT+GGG - chr4_1:10851135-10851154 Msa0535040:CDS 50.0%
TGTGTGTCCGTAGAGCTCAT+GGG - chr4_1:10851891-10851910 Msa0535040:intron 50.0%
GCTTCATTCCTATAGGGTCG+TGG - chr4_1:10852571-10852590 Msa0535040:CDS 50.0%
GGTTACAACCACGACCCTAT+AGG + chr4_1:10852582-10852601 None:intergenic 50.0%
GTCAGGCATGTTGAGGCCAT+TGG + chr4_1:10847780-10847799 None:intergenic 55.0%
GTTATGTTAACCGGTGCCCC+TGG - chr4_1:10849701-10849720 Msa0535040:CDS 55.0%
!! TGCCCCTGGAGCATTGGTTA+AGG - chr4_1:10849715-10849734 Msa0535040:intron 55.0%
AATGTTAACCGGTGCCCCTG+AGG + chr4_1:10849849-10849868 None:intergenic 55.0%
TCTGCTGGCACACAACCTAG+TGG + chr4_1:10850567-10850586 None:intergenic 55.0%
TAAGATGGCCACCGGAGCAA+TGG - chr4_1:10851863-10851882 Msa0535040:intron 55.0%
CACACACAAGGCCATTGCTC+CGG + chr4_1:10851877-10851896 None:intergenic 55.0%
GAGCTCTACGGACACACACA+AGG + chr4_1:10851889-10851908 None:intergenic 55.0%
GTGTGTGTCCGTAGAGCTCA+TGG - chr4_1:10851890-10851909 Msa0535040:intron 55.0%
TGTCCGTAGAGCTCATGGGT+TGG - chr4_1:10851895-10851914 Msa0535040:intron 55.0%
GTCCGTAGAGCTCATGGGTT+GGG - chr4_1:10851896-10851915 Msa0535040:intron 55.0%
! TCCGTAGAGCTCATGGGTTG+GGG - chr4_1:10851897-10851916 Msa0535040:intron 55.0%
!! CTCATGGGTTGGGGCCTATA+TGG - chr4_1:10851906-10851925 Msa0535040:intron 55.0%
CAGCACGAGCAGTAGTGGCT+AGG + chr4_1:10847703-10847722 None:intergenic 60.0%
! AACCAATGCTCCAGGGGCAC+CGG + chr4_1:10849714-10849733 None:intergenic 60.0%
CTTCCGTAACCGGTGCCTCA+GGG - chr4_1:10849831-10849850 Msa0535040:intron 60.0%
TTCCGTAACCGGTGCCTCAG+GGG - chr4_1:10849832-10849851 Msa0535040:intron 60.0%
GTGACAGGAACGGGACCACT+AGG - chr4_1:10850549-10850568 Msa0535040:intron 60.0%
ACACAAGGCCATTGCTCCGG+TGG + chr4_1:10851874-10851893 None:intergenic 60.0%
GCCCCAACCCATGAGCTCTA+CGG + chr4_1:10851901-10851920 None:intergenic 60.0%
AACCGGTGCCCCTGGAGCAT+TGG - chr4_1:10849709-10849728 Msa0535040:intron 65.0%
GCTTCCGTAACCGGTGCCTC+AGG - chr4_1:10849830-10849849 Msa0535040:intron 65.0%
!! TGCCCCTGAGGCACCGGTTA+CGG + chr4_1:10849837-10849856 None:intergenic 65.0%
! AACCGGTGCCTCAGGGGCAC+CGG - chr4_1:10849838-10849857 Msa0535040:intron 70.0%
AACCGGTGCCCCTGAGGCAC+CGG + chr4_1:10849843-10849862 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 10847522 10852717 10847522 ID=Msa0535040;Name=Msa0535040
chr4_1 mRNA 10847522 10852717 10847522 ID=Msa0535040-mRNA-1;Parent=Msa0535040;Name=Msa0535040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=35|1|1|1|1|1|5|185|370
chr4_1 exon 10847522 10847939 10847522 ID=Msa0535040-mRNA-1:exon:3509;Parent=Msa0535040-mRNA-1
chr4_1 exon 10849465 10849723 10849465 ID=Msa0535040-mRNA-1:exon:3508;Parent=Msa0535040-mRNA-1
chr4_1 exon 10850964 10851206 10850964 ID=Msa0535040-mRNA-1:exon:3507;Parent=Msa0535040-mRNA-1
chr4_1 exon 10852172 10852299 10852172 ID=Msa0535040-mRNA-1:exon:3506;Parent=Msa0535040-mRNA-1
chr4_1 exon 10852433 10852717 10852433 ID=Msa0535040-mRNA-1:exon:3505;Parent=Msa0535040-mRNA-1
chr4_1 five_prime_UTR 10852683 10852717 10852683 ID=Msa0535040-mRNA-1:five_prime_utr;Parent=Msa0535040-mRNA-1
chr4_1 CDS 10852433 10852682 10852433 ID=Msa0535040-mRNA-1:cds;Parent=Msa0535040-mRNA-1
chr4_1 CDS 10852172 10852299 10852172 ID=Msa0535040-mRNA-1:cds;Parent=Msa0535040-mRNA-1
chr4_1 CDS 10850964 10851206 10850964 ID=Msa0535040-mRNA-1:cds;Parent=Msa0535040-mRNA-1
chr4_1 CDS 10849465 10849723 10849465 ID=Msa0535040-mRNA-1:cds;Parent=Msa0535040-mRNA-1
chr4_1 CDS 10847707 10847939 10847707 ID=Msa0535040-mRNA-1:cds;Parent=Msa0535040-mRNA-1
chr4_1 three_prime_UTR 10847522 10847706 10847522 ID=Msa0535040-mRNA-1:three_prime_utr;Parent=Msa0535040-mRNA-1
Gene Sequence

>Msa0535040

ATGGAACAAAAAAACCAAATGAATATTATTCCTTCAATATTTCTTTGTGTGTTGATCACCTTGAGCATTGGTGTTCAACAAATTGAAGCAAGAGCATTTTTTGTGTTTGGTGATTCTCTTGTGGACAATGGAAATAATAACTTCCTAGCCACTACTGCTCGTGCTGATTCATATCCTTATGGAATTGATTCTCAAACTCATAGAGCTTCTGGTCGTTTCTCCAATGGCCTCAACATGCCTGACCTTATTAGTGAAAAAATTGGGTCAGAGCCTACATTACCATATTTGAGTCCAGAGCTTGATGGTGAAAGGTTGCTTAATGGTGCTAATTTTGCTTCCGCTGGGATTGGAATTCTCAATGACACTGGAGTTCAGTTTATTAACATAATCCGAATTACTGCCCAATTAGCATACTTTAAACAGTACCAGCAAAGGGTTAGTGCACTAATTGGAGAAAGTGAGGCACAAAAATTAGTGAACCAAGCATTAACCCTAATAACTTTAGGTGGGAATGATTTTGTGAACAACTATTATTTGGTTCCCTACTCAGCCAGATCTCGTGAATATGCTCTTCCTGATTATGTTGTCTTCCTCATTTCTGAGTATCGCAAAATTCTTATGAATCTATATGAATTGGGAGCAAGAAGAGTTTTGGTGACAGGAACGGGACCACTAGGTTGTGTGCCAGCAGAATTGGCTATGCAAGGAAGAAATGGAGAGTGTGGTGTTCCTCTTCAAACAGCTACTAACTTGTTCAATCCTCAACTTGTTCAATTGATTAATCAACTCAATGCTGAAATTGGTGGTCCTAATCATGTCTTCATCTATGCAAATGCCTTTGCTATGCATTTGGATTTCGTTTCTAATCCACAAGCATACGGATTTGAAACATCAAAACATGCATGTTGTGGTCAAGGACCATACAATGGAGTTGGACTATGTACTCCAGCTTCTAACTTGTGCCCTAATAGGGATCTTTATGCATTTTGGGACCCCTTTCATCCATCAGAAAGAGCCAATAGACTAATCGTTGATAAATTTATGACTGGAACTACCGATTACATGCACCCATATAATCTTAGTACACTTATTGCTATGGATTCTAGGACCTAA

Protein sequence

>Msa0535040

MEQKNQMNIIPSIFLCVLITLSIGVQQIEARAFFVFGDSLVDNGNNNFLATTARADSYPYGIDSQTHRASGRFSNGLNMPDLISEKIGSEPTLPYLSPELDGERLLNGANFASAGIGILNDTGVQFINIIRITAQLAYFKQYQQRVSALIGESEAQKLVNQALTLITLGGNDFVNNYYLVPYSARSREYALPDYVVFLISEYRKILMNLYELGARRVLVTGTGPLGCVPAELAMQGRNGECGVPLQTATNLFNPQLVQLINQLNAEIGGPNHVFIYANAFAMHLDFVSNPQAYGFETSKHACCGQGPYNGVGLCTPASNLCPNRDLYAFWDPFHPSERANRLIVDKFMTGTTDYMHPYNLSTLIAMDSRT*