Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076720 | sp|A1A6M1|PTAC5_ARATH | 51.757 | 313 | 134 | 8 | 3 | 309 | 1 | 302 | 3.36e-86 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076720 | G7I2L5 | 88.141 | 312 | 30 | 2 | 1 | 309 | 1 | 308 | 3.50e-169 | 485 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076720 | Msa0124660 | 0.978181 | 2.728041e-145 | -8.615850e-47 |
| Msa0076720 | Msa0432720 | 0.824792 | 6.659935e-54 | -8.615850e-47 |
| Msa0076720 | Msa0525270 | 0.812525 | 4.058575e-51 | -8.615850e-47 |
| Msa0076720 | Msa0525280 | 0.821355 | 4.219801e-53 | -8.615850e-47 |
| Msa0076720 | Msa0704220 | 0.832704 | 8.122665e-56 | -8.615850e-47 |
| Msa0076720 | Msa0769830 | 0.828710 | 7.725943e-55 | -8.615850e-47 |
| Msa0076720 | Msa0809300 | 0.815424 | 9.310639e-52 | -8.615850e-47 |
| Msa0076720 | Msa0848760 | 0.825731 | 3.994086e-54 | -8.615850e-47 |
| Msa0076720 | Msa1075340 | 0.808108 | 3.640949e-50 | -8.615850e-47 |
| Msa0076720 | Msa1119860 | 0.810725 | 9.990711e-51 | -8.615850e-47 |
| Msa0076720 | Msa1162730 | 0.866936 | 1.980145e-65 | -8.615850e-47 |
| Msa0076720 | Msa1354090 | 0.818716 | 1.695495e-52 | -8.615850e-47 |
| Msa0076720 | Msa1434660 | 0.801780 | 7.659622e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076720 | MtrunA17_Chr1g0185881 | 88.141 | 312 | 30 | 2 | 1 | 309 | 1 | 308 | 6.74e-173 | 485 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076720 | AT4G13670.3 | 51.757 | 313 | 134 | 8 | 3 | 309 | 1 | 302 | 6.52e-88 | 268 |
| Msa0076720 | AT4G13670.1 | 51.757 | 313 | 134 | 8 | 3 | 309 | 1 | 302 | 3.41e-87 | 267 |
| Msa0076720 | AT4G13670.2 | 53.731 | 268 | 114 | 6 | 3 | 265 | 1 | 263 | 5.10e-79 | 243 |
| Msa0076720 | AT4G13670.4 | 53.731 | 268 | 114 | 6 | 3 | 265 | 1 | 263 | 5.10e-79 | 243 |
Find 125 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACTTGAGGTTCAATATT+TGG | 0.133095 | 1_2:+52999206 | None:intergenic |
| TCTTCTTGAGAGGCTATATT+TGG | 0.177538 | 1_2:-53000788 | Msa0076720:CDS |
| ATAGGAAGCATTGCTAAAAT+TGG | 0.187653 | 1_2:-53001508 | Msa0076720:intron |
| GATGGGATGCTTCTGTTTCT+TGG | 0.211385 | 1_2:+53000012 | None:intergenic |
| TTTGATATTGTTAGAGGTTC+AGG | 0.254529 | 1_2:-52998779 | Msa0076720:three_prime_UTR |
| TAGAAATTTGATATTGTTAG+AGG | 0.254766 | 1_2:-52998785 | Msa0076720:three_prime_UTR |
| TGCCCTAGACCTTCACAATA+TGG | 0.263996 | 1_2:+52999058 | None:intergenic |
| ATGAAATGCCTTCAATGTTC+TGG | 0.265689 | 1_2:-52999895 | Msa0076720:exon |
| GGTAAGGGAATTGAATTTAT+AGG | 0.268387 | 1_2:+53002107 | None:intergenic |
| TGTCAACCTTTCTTGAGATT+TGG | 0.274047 | 1_2:-52998618 | Msa0076720:three_prime_UTR |
| AGAGGCTATATTTGGATATA+AGG | 0.293358 | 1_2:-53000780 | Msa0076720:CDS |
| GAAAGGTTGACAAATTGATA+TGG | 0.299125 | 1_2:+52998629 | None:intergenic |
| ATTGTTAGAGGTTCAGGTTT+TGG | 0.307392 | 1_2:-52998773 | Msa0076720:three_prime_UTR |
| GGTGTTGAAGGATAAGAATT+TGG | 0.307976 | 1_2:-53001842 | Msa0076720:CDS |
| TGTTAACTGATAAACATAAC+TGG | 0.320361 | 1_2:-52998812 | Msa0076720:three_prime_UTR |
| ACCTTCGTCGAAAGTCTTGA+TGG | 0.348199 | 1_2:+52999952 | None:intergenic |
| TTTGAGAAATGAGAGGGTTT+TGG | 0.351215 | 1_2:+53002143 | None:intergenic |
| CGACGAAGGTTAGAGTTGAT+AGG | 0.357851 | 1_2:-52999939 | Msa0076720:CDS |
| GCATTTGGCCACATTCATTT+CGG | 0.362122 | 1_2:+52998686 | None:intergenic |
| AGTATACTTATAATTGCATT+TGG | 0.362205 | 1_2:+52998671 | None:intergenic |
| TTTGAAAGTAGCCTCACTTT+TGG | 0.362937 | 1_2:-52998551 | Msa0076720:three_prime_UTR |
| GAGTTCTAGGAAGTTGAAAA+TGG | 0.370611 | 1_2:-53000098 | Msa0076720:intron |
| AGAGTTACAGTGACGGTTAT+GGG | 0.371248 | 1_2:+53002189 | None:intergenic |
| TAGAGTTACAGTGACGGTTA+TGG | 0.378603 | 1_2:+53002188 | None:intergenic |
| TTGAATTTGAAGTTTAAGTT+CGG | 0.384376 | 1_2:+53001948 | None:intergenic |
| AGATGAAGTGGAAGAAGAAA+AGG | 0.404194 | 1_2:-53001767 | Msa0076720:CDS |
| GTTAGTGCTTGAGGAGGAAA+AGG | 0.421005 | 1_2:-53001791 | Msa0076720:CDS |
| GTGTTCTTCGCGATCGGGAA+TGG | 0.425539 | 1_2:+53002074 | None:intergenic |
| AGAAGAGGTTCAAAAGTTGC+AGG | 0.426132 | 1_2:-53001653 | Msa0076720:intron |
| TAGGAAGCATTGCTAAAATT+GGG | 0.430808 | 1_2:-53001507 | Msa0076720:CDS |
| TGAAATGCCTTCAATGTTCT+GGG | 0.435833 | 1_2:-52999894 | Msa0076720:three_prime_UTR |
| GTTTCTTCATCGTTTCATAC+AGG | 0.437781 | 1_2:-52998984 | Msa0076720:intron |
| TATTGTTTAACAGTCTTCGT+TGG | 0.443547 | 1_2:-53000842 | Msa0076720:intron |
| CAGCGGTGTTCTTCGCGATC+GGG | 0.449847 | 1_2:+53002069 | None:intergenic |
| GAATGTTGCGGCATTGCTAC+AGG | 0.449896 | 1_2:-53001863 | Msa0076720:CDS |
| TTCCCAAGGAGGAAAACTCT+TGG | 0.450321 | 1_2:+52999990 | None:intergenic |
| GACGAAGGTTAGAGTTGATA+GGG | 0.456347 | 1_2:-52999938 | Msa0076720:CDS |
| GCCCTAGACCTTCACAATAT+GGG | 0.458002 | 1_2:+52999059 | None:intergenic |
| CCAGCGGTGTTCTTCGCGAT+CGG | 0.462132 | 1_2:+53002068 | None:intergenic |
| GAAGCCATCGTTGTTCTTCA+CGG | 0.463148 | 1_2:+53002043 | None:intergenic |
| TACCTTGCCCAGAACATTGA+AGG | 0.467337 | 1_2:+52999887 | None:intergenic |
| ATTGTTTAACAGTCTTCGTT+GGG | 0.467627 | 1_2:-53000841 | Msa0076720:intron |
| GACGTCATGATCCCATCCTC+AGG | 0.480208 | 1_2:+53000814 | None:intergenic |
| TGCCCATATTGTGAAGGTCT+AGG | 0.482624 | 1_2:-52999061 | Msa0076720:three_prime_UTR |
| TCGTTGGGCATCCCTGAGGA+TGG | 0.484266 | 1_2:-53000826 | Msa0076720:CDS |
| CTGAGCGTGCTGTGAAGACT+TGG | 0.485165 | 1_2:-53001434 | Msa0076720:CDS |
| AAAGGTTGACAAATTGATAT+GGG | 0.490286 | 1_2:+52998630 | None:intergenic |
| CAAGGTATCTTGTTGTGTAC+AGG | 0.491562 | 1_2:-52999871 | Msa0076720:intron |
| GAATCGATGGAATCGTGAAC+GGG | 0.492158 | 1_2:-53001992 | Msa0076720:CDS |
| GGAGGAAAAGGAAGATGAAG+TGG | 0.494506 | 1_2:-53001779 | Msa0076720:CDS |
| GGCATTGCTACAGGTGTTGA+AGG | 0.495635 | 1_2:-53001854 | Msa0076720:CDS |
| GGAATCTGTTGAGGTTGTAA+AGG | 0.496533 | 1_2:-53001746 | Msa0076720:CDS |
| GTTTATGGAATGGGTGGGTG+AGG | 0.509439 | 1_2:-52999092 | Msa0076720:three_prime_UTR |
| TCAGAGGAGGTTAGTGCTTG+AGG | 0.509466 | 1_2:-53001800 | Msa0076720:CDS |
| TTTGGTGGGGAAAGAGAGTG+TGG | 0.512214 | 1_2:+53002161 | None:intergenic |
| TGTTGAGAAACCTGCTGCTA+AGG | 0.513290 | 1_2:-53001713 | Msa0076720:CDS |
| AAGAATTTGGTTCTTGAGAG+TGG | 0.516277 | 1_2:-53001829 | Msa0076720:CDS |
| TGAGGTTGTAAAGGAGATTG+TGG | 0.520541 | 1_2:-53001737 | Msa0076720:CDS |
| AATGGAGCAGTGAGCGGTAA+GGG | 0.522076 | 1_2:+53002092 | None:intergenic |
| GCCCATATTGTGAAGGTCTA+GGG | 0.524228 | 1_2:-52999060 | Msa0076720:three_prime_UTR |
| TGTGATGCAGTTTATGGAAT+GGG | 0.528310 | 1_2:-52999101 | Msa0076720:intron |
| TTCCTCCTTGGGAAAATCGG+TGG | 0.533376 | 1_2:-52999981 | Msa0076720:CDS |
| CAAGGAGGAAAACTCTTGGA+TGG | 0.534791 | 1_2:+52999994 | None:intergenic |
| ATTGCAGAATGTGATGGATC+TGG | 0.539845 | 1_2:-52999233 | Msa0076720:intron |
| ATGAGGTTTGAGAAATGAGA+GGG | 0.543349 | 1_2:+53002137 | None:intergenic |
| CGATGCGGTTTCGAATGTTG+CGG | 0.544549 | 1_2:-53001875 | Msa0076720:CDS |
| TTGAGAGTGGTTCTAGTCAG+AGG | 0.547189 | 1_2:-53001816 | Msa0076720:CDS |
| GAATGGAGCAGTGAGCGGTA+AGG | 0.547203 | 1_2:+53002091 | None:intergenic |
| CGTTGGGCATCCCTGAGGAT+GGG | 0.552075 | 1_2:-53000825 | Msa0076720:CDS |
| AAGGGAATTGAATTTATAGG+AGG | 0.553750 | 1_2:+53002110 | None:intergenic |
| TTCTTCTACGTCTTCCGATG+CGG | 0.555273 | 1_2:-53001890 | Msa0076720:CDS |
| TGCCTTCAATGTTCTGGGCA+AGG | 0.563469 | 1_2:-52999889 | Msa0076720:three_prime_UTR |
| TACAGTGACGGTTATGGGAA+CGG | 0.566716 | 1_2:+53002194 | None:intergenic |
| ATATTTGGATATAAGGACTA+CGG | 0.568308 | 1_2:-53000773 | Msa0076720:CDS |
| GATGGCTTCGCGAGGAGCAA+CGG | 0.569267 | 1_2:-53002029 | Msa0076720:CDS |
| ATAACTTGTGATTTGTGTCG+AGG | 0.569352 | 1_2:-52999034 | Msa0076720:three_prime_UTR |
| AGTTGATAGGGGCAAGAACA+AGG | 0.571690 | 1_2:-52999926 | Msa0076720:CDS |
| AACCTCTGAAATTTCTGTCA+CGG | 0.573766 | 1_2:+53000061 | None:intergenic |
| TCTTTGATTGCAGAATGTGA+TGG | 0.581458 | 1_2:-52999239 | Msa0076720:intron |
| CCGATCGCGAAGAACACCGC+TGG | 0.583146 | 1_2:-53002068 | Msa0076720:CDS |
| GGCTTCGCGAGGAGCAACGG+TGG | 0.584221 | 1_2:-53002026 | Msa0076720:CDS |
| CGCAACATTCGAAACCGCAT+CGG | 0.586895 | 1_2:+53001876 | None:intergenic |
| AGAATCGATGGAATCGTGAA+CGG | 0.587227 | 1_2:-53001993 | Msa0076720:CDS |
| TCCTCCTTGGGAAAATCGGT+GGG | 0.588492 | 1_2:-52999980 | Msa0076720:CDS |
| TAACTTGTGATTTGTGTCGA+GGG | 0.588543 | 1_2:-52999033 | Msa0076720:three_prime_UTR |
| TTTGGCCACATTCATTTCGG+AGG | 0.590724 | 1_2:+52998689 | None:intergenic |
| AAGGAGGAAAACTCTTGGAT+GGG | 0.591075 | 1_2:+52999995 | None:intergenic |
| AAGATATAATTCGATGCTCG+AGG | 0.592000 | 1_2:+53001923 | None:intergenic |
| TCGGAAGACGTAGAAGAAGA+AGG | 0.592316 | 1_2:+53001895 | None:intergenic |
| GGATTCGCGAGGAGAATCGA+TGG | 0.592474 | 1_2:-53002005 | Msa0076720:CDS |
| TTACTCGGGTGAGGAGGACA+TGG | 0.594106 | 1_2:-53001481 | Msa0076720:CDS |
| TCGAGGGAAAACGATGGTGT+AGG | 0.597452 | 1_2:-52999017 | Msa0076720:three_prime_UTR |
| AACTACCGGAAAATGAAAGC+AGG | 0.603300 | 1_2:-52998732 | Msa0076720:three_prime_UTR |
| GATGCAGTTTATGGAATGGG+TGG | 0.603655 | 1_2:-52999098 | Msa0076720:intron |
| AATGAGGTTTGAGAAATGAG+AGG | 0.606074 | 1_2:+53002136 | None:intergenic |
| AACAGGTTCTGAAGGAGAAG+AGG | 0.607825 | 1_2:-53001668 | Msa0076720:CDS |
| GAATTCTCTAGCTTCTCAAG+TGG | 0.612169 | 1_2:-53001459 | Msa0076720:CDS |
| AGAAGAAAAGGAATCTGTTG+AGG | 0.612843 | 1_2:-53001755 | Msa0076720:CDS |
| CTGTGATGCAGTTTATGGAA+TGG | 0.616155 | 1_2:-52999102 | Msa0076720:intron |
| TTGGGCATTTGCCAAAAGTG+AGG | 0.619363 | 1_2:+52998540 | None:intergenic |
| ACAAAATGCCCATATTGTGA+AGG | 0.621713 | 1_2:-52999067 | Msa0076720:three_prime_UTR |
| AATTCTCTAGCTTCTCAAGT+GGG | 0.622250 | 1_2:-53001458 | Msa0076720:CDS |
| TACAAGCGAAGTGAAACTAC+CGG | 0.624885 | 1_2:-52998746 | Msa0076720:three_prime_UTR |
| ATGCAGTTTATGGAATGGGT+GGG | 0.631580 | 1_2:-52999097 | Msa0076720:intron |
| TTCCGTGACAGAAATTTCAG+AGG | 0.631894 | 1_2:-53000063 | Msa0076720:CDS |
| AGAGTGGTTCTAGTCAGAGG+AGG | 0.634878 | 1_2:-53001813 | Msa0076720:CDS |
| GTGACGGTTATGGGAACGGT+AGG | 0.637180 | 1_2:+53002198 | None:intergenic |
| CTGCTGCTAAGGTTGAAAAG+AGG | 0.637914 | 1_2:-53001702 | Msa0076720:CDS |
| GTTGTTCTTCACGGAGCCAG+CGG | 0.640610 | 1_2:+53002052 | None:intergenic |
| GTTAACTGATAAACATAACT+GGG | 0.640634 | 1_2:-52998811 | Msa0076720:three_prime_UTR |
| ATCGGGAATGGAGCAGTGAG+CGG | 0.642837 | 1_2:+53002086 | None:intergenic |
| AGATATAATTCGATGCTCGA+GGG | 0.643521 | 1_2:+53001924 | None:intergenic |
| ACCATCAAGACTTTCGACGA+AGG | 0.643727 | 1_2:-52999953 | Msa0076720:CDS |
| GGAGCAACGGTGGATTCGCG+AGG | 0.645147 | 1_2:-53002016 | Msa0076720:CDS |
| TGACGTCTAATCTTCTTGAG+AGG | 0.653400 | 1_2:-53000798 | Msa0076720:CDS |
| ACGTCATGATCCCATCCTCA+GGG | 0.653901 | 1_2:+53000815 | None:intergenic |
| ACGAAGGTTAGAGTTGATAG+GGG | 0.654349 | 1_2:-52999937 | Msa0076720:CDS |
| GAGGAGGTTAGTGCTTGAGG+AGG | 0.654807 | 1_2:-53001797 | Msa0076720:CDS |
| ACTTTCCTCCGAAATGAATG+TGG | 0.654859 | 1_2:-52998694 | Msa0076720:three_prime_UTR |
| GATAGGGGCAAGAACAAGGA+CGG | 0.659961 | 1_2:-52999922 | Msa0076720:CDS |
| AGAACAACGATGGCTTCGCG+AGG | 0.677962 | 1_2:-53002037 | Msa0076720:CDS |
| GGCTCCGTGAAGAACAACGA+TGG | 0.678007 | 1_2:-53002047 | Msa0076720:CDS |
| GGAGTTTAGAGTTACAGTGA+CGG | 0.682062 | 1_2:+53002182 | None:intergenic |
| GTCTTCGTTGGGCATCCCTG+AGG | 0.685757 | 1_2:-53000830 | Msa0076720:CDS |
| TTTGTGTCGAGGGAAAACGA+TGG | 0.877433 | 1_2:-52999023 | Msa0076720:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCATACATAATATATTT+AGG | + | chr1_2:53001460-53001479 | None:intergenic | 10.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr1_2:52999632-52999651 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr1_2:52999735-52999754 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr1_2:52999759-52999778 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr1_2:52999758-52999777 | Msa0076720:intron | 15.0% |
| !!! | ATTTTTTTTTTCATATGTTG+AGG | + | chr1_2:53000454-53000473 | None:intergenic | 15.0% |
| !!! | TTGAATTTGAAGTTTAAGTT+CGG | + | chr1_2:52998823-52998842 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr1_2:52999672-52999691 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr1_2:52999749-52999768 | Msa0076720:intron | 20.0% |
| !!! | TAAAACATTAGCAGATTTTT+TGG | + | chr1_2:53000042-53000061 | None:intergenic | 20.0% |
| !! | TTATATAACAAACATACCTT+CGG | + | chr1_2:53000065-53000084 | None:intergenic | 20.0% |
| !! | GATAAAGAATCAAATACAAA+TGG | + | chr1_2:53000645-53000664 | None:intergenic | 20.0% |
| !! | ATTATGTATGATATCAACTT+TGG | - | chr1_2:53001466-53001485 | Msa0076720:CDS | 20.0% |
| !! | TAGAAATTTGATATTGTTAG+AGG | - | chr1_2:53001983-53002002 | Msa0076720:CDS | 20.0% |
| !! | AGTATACTTATAATTGCATT+TGG | + | chr1_2:53002100-53002119 | None:intergenic | 20.0% |
| ! | AATTTATAGGAGGAAAAATG+AGG | + | chr1_2:52998651-52998670 | None:intergenic | 25.0% |
| ! | GAAGAGAATAATAACTGTAT+TGG | - | chr1_2:52999397-52999416 | Msa0076720:intron | 25.0% |
| !!! | AGTATATGCTATGCTATTTT+TGG | - | chr1_2:52999868-52999887 | Msa0076720:intron | 25.0% |
| !! | TTTAACTGTCATGATTTTGA+TGG | - | chr1_2:52999895-52999914 | Msa0076720:exon | 25.0% |
| !!! | TTAACTGTCATGATTTTGAT+GGG | - | chr1_2:52999896-52999915 | Msa0076720:exon | 25.0% |
| ! | ATATTTGGATATAAGGACTA+CGG | - | chr1_2:52999995-53000014 | Msa0076720:CDS | 25.0% |
| ! | TAAGAGTAACCACAAAAATA+TGG | + | chr1_2:53000125-53000144 | None:intergenic | 25.0% |
| ! | CTTTACATTGAATACATGTT+TGG | - | chr1_2:53000201-53000220 | Msa0076720:intron | 25.0% |
| ! | TCATTATTTGACAGTTATCA+AGG | - | chr1_2:53000529-53000548 | Msa0076720:intron | 25.0% |
| !! | TCCTAAAAGTTTAAGCTTTT+AGG | - | chr1_2:53000560-53000579 | Msa0076720:intron | 25.0% |
| !! | ACCTAAAAGCTTAAACTTTT+AGG | + | chr1_2:53000564-53000583 | None:intergenic | 25.0% |
| ! | TCAACTAAAAGTGAAAACAA+CGG | + | chr1_2:53000936-53000955 | None:intergenic | 25.0% |
| ! | CATAAATAATGACCATTACA+TGG | - | chr1_2:53001404-53001423 | Msa0076720:intron | 25.0% |
| ! | AAATATTGAACCTCAAGTAA+GGG | - | chr1_2:53001564-53001583 | Msa0076720:intron | 25.0% |
| ! | TGTTAACTGATAAACATAAC+TGG | - | chr1_2:53001956-53001975 | Msa0076720:CDS | 25.0% |
| ! | GTTAACTGATAAACATAACT+GGG | - | chr1_2:53001957-53001976 | Msa0076720:CDS | 25.0% |
| ! | AATTGATATGGGAAAAAGAA+TGG | + | chr1_2:53002130-53002149 | None:intergenic | 25.0% |
| ! | AAAGGTTGACAAATTGATAT+GGG | + | chr1_2:53002141-53002160 | None:intergenic | 25.0% |
| AAGGGAATTGAATTTATAGG+AGG | + | chr1_2:52998661-52998680 | None:intergenic | 30.0% | |
| GGTAAGGGAATTGAATTTAT+AGG | + | chr1_2:52998664-52998683 | None:intergenic | 30.0% | |
| GTGATGAATTGTGTTACAAT+AGG | - | chr1_2:52999242-52999261 | Msa0076720:intron | 30.0% | |
| !! | ATAGGAAGCATTGCTAAAAT+TGG | - | chr1_2:52999260-52999279 | Msa0076720:intron | 30.0% |
| !! | TAGGAAGCATTGCTAAAATT+GGG | - | chr1_2:52999261-52999280 | Msa0076720:intron | 30.0% |
| ! | GCTAAAATTGGGATTTTACT+CGG | - | chr1_2:52999272-52999291 | Msa0076720:intron | 30.0% |
| ! | CTAAAATTGGGATTTTACTC+GGG | - | chr1_2:52999273-52999292 | Msa0076720:intron | 30.0% |
| !! | TATTTTTGTTACTGCGTGTT+TGG | - | chr1_2:52999423-52999442 | Msa0076720:intron | 30.0% |
| ATTAGAGCTTCACAAAATGA+CGG | + | chr1_2:52999482-52999501 | None:intergenic | 30.0% | |
| ! | TGTAGCTTTTCTCAAAATCA+CGG | - | chr1_2:52999503-52999522 | Msa0076720:intron | 30.0% |
| !! | ATTTGGATTGATGATGACAT+TGG | + | chr1_2:52999547-52999566 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr1_2:52999840-52999859 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr1_2:52999841-52999860 | Msa0076720:intron | 30.0% |
| TATTGTTTAACAGTCTTCGT+TGG | - | chr1_2:52999926-52999945 | Msa0076720:CDS | 30.0% | |
| ATTGTTTAACAGTCTTCGTT+GGG | - | chr1_2:52999927-52999946 | Msa0076720:CDS | 30.0% | |
| AGAGGCTATATTTGGATATA+AGG | - | chr1_2:52999988-53000007 | Msa0076720:CDS | 30.0% | |
| !! | AACATGCAACCATATTTTTG+TGG | - | chr1_2:53000113-53000132 | Msa0076720:intron | 30.0% |
| TGTTATTAGTATCTACACGT+TGG | - | chr1_2:53000304-53000323 | Msa0076720:intron | 30.0% | |
| TTCATATCTTGTCTCTTCAT+TGG | + | chr1_2:53000622-53000641 | None:intergenic | 30.0% | |
| TCTTTATCAATCTGAGTTCT+AGG | - | chr1_2:53000657-53000676 | Msa0076720:intron | 30.0% | |
| AACTAAAAGTGAAAACAACG+GGG | + | chr1_2:53000934-53000953 | None:intergenic | 30.0% | |
| CAACTAAAAGTGAAAACAAC+GGG | + | chr1_2:53000935-53000954 | None:intergenic | 30.0% | |
| ! | AAGAATTGATTTCCTTACTG+GGG | + | chr1_2:53000968-53000987 | None:intergenic | 30.0% |
| ! | CAAGAATTGATTTCCTTACT+GGG | + | chr1_2:53000969-53000988 | None:intergenic | 30.0% |
| ! | TCAAGAATTGATTTCCTTAC+TGG | + | chr1_2:53000970-53000989 | None:intergenic | 30.0% |
| AACAAAACAACCTAGAGAAA+AGG | + | chr1_2:53001021-53001040 | None:intergenic | 30.0% | |
| TCAAATAACTCGGATGAATT+GGG | + | chr1_2:53001135-53001154 | None:intergenic | 30.0% | |
| TTCAAATAACTCGGATGAAT+TGG | + | chr1_2:53001136-53001155 | None:intergenic | 30.0% | |
| GAAAATCAACTGTGTGATAA+TGG | - | chr1_2:53001236-53001255 | Msa0076720:intron | 30.0% | |
| AGTTCAGTTTGATGTGATAA+TGG | - | chr1_2:53001263-53001282 | Msa0076720:intron | 30.0% | |
| TAATGGCTATTGTGTGAATT+TGG | - | chr1_2:53001280-53001299 | Msa0076720:intron | 30.0% | |
| AATGGCTATTGTGTGAATTT+GGG | - | chr1_2:53001281-53001300 | Msa0076720:intron | 30.0% | |
| ATAGTAGTATTCATAACAGC+AGG | - | chr1_2:53001317-53001336 | Msa0076720:intron | 30.0% | |
| TTTATGAAGACCTAAATGTG+AGG | + | chr1_2:53001390-53001409 | None:intergenic | 30.0% | |
| ACATTCTGCAATCAAAGAAA+CGG | + | chr1_2:53001527-53001546 | None:intergenic | 30.0% | |
| CTTACTTGAGGTTCAATATT+TGG | + | chr1_2:53001565-53001584 | None:intergenic | 30.0% | |
| CAAATATTGAACCTCAAGTA+AGG | - | chr1_2:53001563-53001582 | Msa0076720:intron | 30.0% | |
| TTTGATATTGTTAGAGGTTC+AGG | - | chr1_2:53001989-53002008 | Msa0076720:CDS | 30.0% | |
| GAAAGGTTGACAAATTGATA+TGG | + | chr1_2:53002142-53002161 | None:intergenic | 30.0% | |
| ! | TCTTTTCCAAATCTCAAGAA+AGG | + | chr1_2:53002159-53002178 | None:intergenic | 30.0% |
| ! | TTTGAGAAATGAGAGGGTTT+TGG | + | chr1_2:52998628-52998647 | None:intergenic | 35.0% |
| ATGAGGTTTGAGAAATGAGA+GGG | + | chr1_2:52998634-52998653 | None:intergenic | 35.0% | |
| AATGAGGTTTGAGAAATGAG+AGG | + | chr1_2:52998635-52998654 | None:intergenic | 35.0% | |
| AGATATAATTCGATGCTCGA+GGG | + | chr1_2:52998847-52998866 | None:intergenic | 35.0% | |
| AAGATATAATTCGATGCTCG+AGG | + | chr1_2:52998848-52998867 | None:intergenic | 35.0% | |
| ! | GGTGTTGAAGGATAAGAATT+TGG | - | chr1_2:52998926-52998945 | Msa0076720:intron | 35.0% |
| !! | AAGAATTTGGTTCTTGAGAG+TGG | - | chr1_2:52998939-52998958 | Msa0076720:intron | 35.0% |
| AGATGAAGTGGAAGAAGAAA+AGG | - | chr1_2:52999001-52999020 | Msa0076720:three_prime_UTR | 35.0% | |
| AGAAGAAAAGGAATCTGTTG+AGG | - | chr1_2:52999013-52999032 | Msa0076720:three_prime_UTR | 35.0% | |
| ! | AATTCTCTAGCTTCTCAAGT+GGG | - | chr1_2:52999310-52999329 | Msa0076720:intron | 35.0% |
| TGATTTCAGCAAATTCATGG+TGG | - | chr1_2:52999454-52999473 | Msa0076720:intron | 35.0% | |
| CATCAATCCAAATTCCAACT+TGG | - | chr1_2:52999554-52999573 | Msa0076720:intron | 35.0% | |
| ! | AATAGCACCAAGTTGGAATT+TGG | + | chr1_2:52999564-52999583 | None:intergenic | 35.0% |
| ACACTATAATAGCACCAAGT+TGG | + | chr1_2:52999571-52999590 | None:intergenic | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr1_2:52999606-52999625 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr1_2:52999706-52999725 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr1_2:52999710-52999729 | None:intergenic | 35.0% |
| TCTTCTTGAGAGGCTATATT+TGG | - | chr1_2:52999980-52999999 | Msa0076720:CDS | 35.0% | |
| ! | ATCTGCTAATGTTTTACCGA+AGG | - | chr1_2:53000046-53000065 | Msa0076720:CDS | 35.0% |
| !! | GTACTTTTTGCTCTTGAGTA+CGG | - | chr1_2:53000088-53000107 | Msa0076720:CDS | 35.0% |
| TCTTGATGGAAATCTGAACA+AGG | - | chr1_2:53000408-53000427 | Msa0076720:intron | 35.0% | |
| !! | GCTTAAACTTTTAGGAGAGT+GGG | + | chr1_2:53000556-53000575 | None:intergenic | 35.0% |
| !! | AGCTTAAACTTTTAGGAGAG+TGG | + | chr1_2:53000557-53000576 | None:intergenic | 35.0% |
| !! | GAGTTCTAGGAAGTTGAAAA+TGG | - | chr1_2:53000670-53000689 | Msa0076720:intron | 35.0% |
| !! | AACCTCTGAAATTTCTGTCA+CGG | + | chr1_2:53000710-53000729 | None:intergenic | 35.0% |
| ATGAAATGCCTTCAATGTTC+TGG | - | chr1_2:53000873-53000892 | Msa0076720:intron | 35.0% | |
| TGAAATGCCTTCAATGTTCT+GGG | - | chr1_2:53000874-53000893 | Msa0076720:intron | 35.0% | |
| TGAATATATAAGCCCCAGTA+AGG | - | chr1_2:53000953-53000972 | Msa0076720:intron | 35.0% | |
| !! | TGAGAGTATACCTTTTCTCT+AGG | - | chr1_2:53001008-53001027 | Msa0076720:intron | 35.0% |
| ACAATGTCATCTTGTTGACA+AGG | - | chr1_2:53001098-53001117 | Msa0076720:intron | 35.0% | |
| ! | CTCGAGGTATTCAAATAACT+CGG | + | chr1_2:53001145-53001164 | None:intergenic | 35.0% |
| !!! | TTCACATGGTTTTTTTCTCG+AGG | + | chr1_2:53001161-53001180 | None:intergenic | 35.0% |
| GTTAGTCAATCCACTCAAAT+TGG | - | chr1_2:53001182-53001201 | Msa0076720:intron | 35.0% | |
| TCTAGTTAAGCCAATTTGAG+TGG | + | chr1_2:53001195-53001214 | None:intergenic | 35.0% | |
| GCTCAGCATCTTTATTATAC+TGG | - | chr1_2:53001431-53001450 | Msa0076720:CDS | 35.0% | |
| GACTTGAGACTTGAGATATA+TGG | + | chr1_2:53001499-53001518 | None:intergenic | 35.0% | |
| TCTTTGATTGCAGAATGTGA+TGG | - | chr1_2:53001529-53001548 | Msa0076720:intron | 35.0% | |
| TGTGATGCAGTTTATGGAAT+GGG | - | chr1_2:53001667-53001686 | Msa0076720:CDS | 35.0% | |
| ACAAAATGCCCATATTGTGA+AGG | - | chr1_2:53001701-53001720 | Msa0076720:CDS | 35.0% | |
| ! | ATAACTTGTGATTTGTGTCG+AGG | - | chr1_2:53001734-53001753 | Msa0076720:CDS | 35.0% |
| ! | TAACTTGTGATTTGTGTCGA+GGG | - | chr1_2:53001735-53001754 | Msa0076720:CDS | 35.0% |
| GTTTCTTCATCGTTTCATAC+AGG | - | chr1_2:53001784-53001803 | Msa0076720:CDS | 35.0% | |
| !! | ATTGTTAGAGGTTCAGGTTT+TGG | - | chr1_2:53001995-53002014 | Msa0076720:CDS | 35.0% |
| ! | TTCAACCTGCTTTCATTTTC+CGG | + | chr1_2:53002044-53002063 | None:intergenic | 35.0% |
| TGTCAACCTTTCTTGAGATT+TGG | - | chr1_2:53002150-53002169 | Msa0076720:CDS | 35.0% | |
| AGAGTTACAGTGACGGTTAT+GGG | + | chr1_2:52998582-52998601 | None:intergenic | 40.0% | |
| TAGAGTTACAGTGACGGTTA+TGG | + | chr1_2:52998583-52998602 | None:intergenic | 40.0% | |
| ! | GGAGTTTAGAGTTACAGTGA+CGG | + | chr1_2:52998589-52998608 | None:intergenic | 40.0% |
| !! | AGAAATGAGAGGGTTTTGGT+GGG | + | chr1_2:52998624-52998643 | None:intergenic | 40.0% |
| AGAATCGATGGAATCGTGAA+CGG | - | chr1_2:52998775-52998794 | Msa0076720:three_prime_UTR | 40.0% | |
| GGAATCTGTTGAGGTTGTAA+AGG | - | chr1_2:52999022-52999041 | Msa0076720:three_prime_UTR | 40.0% | |
| TGAGGTTGTAAAGGAGATTG+TGG | - | chr1_2:52999031-52999050 | Msa0076720:three_prime_UTR | 40.0% | |
| AGAAGAGGTTCAAAAGTTGC+AGG | - | chr1_2:52999115-52999134 | Msa0076720:intron | 40.0% | |
| ! | GAATTCTCTAGCTTCTCAAG+TGG | - | chr1_2:52999309-52999328 | Msa0076720:intron | 40.0% |
| TTGTTACTGCGTGTTTGGAT+TGG | - | chr1_2:52999428-52999447 | Msa0076720:intron | 40.0% | |
| CGGTGATTTCAGCAAATTCA+TGG | - | chr1_2:52999451-52999470 | Msa0076720:intron | 40.0% | |
| TGATGACATTGGCAGAATCA+CGG | + | chr1_2:52999536-52999555 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1_2:52999845-52999864 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr1_2:52999707-52999726 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1_2:52999845-52999864 | Msa0076720:intron | 40.0% |
| TGACGTCTAATCTTCTTGAG+AGG | - | chr1_2:52999970-52999989 | Msa0076720:CDS | 40.0% | |
| ! | GTGTTGTTGCTACATAGCAT+GGG | + | chr1_2:53000182-53000201 | None:intergenic | 40.0% |
| ! | AGTGTTGTTGCTACATAGCA+TGG | + | chr1_2:53000183-53000202 | None:intergenic | 40.0% |
| ATGAAACACTGACAGAGACA+TGG | + | chr1_2:53000345-53000364 | None:intergenic | 40.0% | |
| TGATAGATGCCATGTCTCTA+AGG | - | chr1_2:53000368-53000387 | Msa0076720:intron | 40.0% | |
| GATAGATGCCATGTCTCTAA+GGG | - | chr1_2:53000369-53000388 | Msa0076720:intron | 40.0% | |
| !! | CTAAGGGATTGGTCAATGAT+TGG | - | chr1_2:53000385-53000404 | Msa0076720:intron | 40.0% |
| !! | TGGTCAATGATTGGTCTTGA+TGG | - | chr1_2:53000394-53000413 | Msa0076720:intron | 40.0% |
| CTACAAAATCTACTACTCCC+AGG | + | chr1_2:53000592-53000611 | None:intergenic | 40.0% | |
| TTCCGTGACAGAAATTTCAG+AGG | - | chr1_2:53000705-53000724 | Msa0076720:intron | 40.0% | |
| AAGGAGGAAAACTCTTGGAT+GGG | + | chr1_2:53000776-53000795 | None:intergenic | 40.0% | |
| ! | ATCCAAGAGTTTTCCTCCTT+GGG | - | chr1_2:53000776-53000795 | Msa0076720:CDS | 40.0% |
| ! | GTTTTCCTCCTTGGGAAAAT+CGG | - | chr1_2:53000784-53000803 | Msa0076720:CDS | 40.0% |
| !! | GACGAAGGTTAGAGTTGATA+GGG | - | chr1_2:53000830-53000849 | Msa0076720:CDS | 40.0% |
| !! | ACGAAGGTTAGAGTTGATAG+GGG | - | chr1_2:53000831-53000850 | Msa0076720:CDS | 40.0% |
| ! | CAAGGTATCTTGTTGTGTAC+AGG | - | chr1_2:53000897-53000916 | Msa0076720:intron | 40.0% |
| GTCAACAAGATGACATTGTG+AGG | + | chr1_2:53001097-53001116 | None:intergenic | 40.0% | |
| AACTCGGATGAATTGGGATT+AGG | + | chr1_2:53001129-53001148 | None:intergenic | 40.0% | |
| TGGATTGACTAACGTTCACA+TGG | + | chr1_2:53001175-53001194 | None:intergenic | 40.0% | |
| AGTATTCATAACAGCAGGCA+TGG | - | chr1_2:53001322-53001341 | Msa0076720:intron | 40.0% | |
| GGTGGTTTATCCTCACATTT+AGG | - | chr1_2:53001377-53001396 | Msa0076720:intron | 40.0% | |
| !! | ATTGCAGAATGTGATGGATC+TGG | - | chr1_2:53001535-53001554 | Msa0076720:intron | 40.0% |
| GAGATCTGTGATGCAGTTTA+TGG | - | chr1_2:53001661-53001680 | Msa0076720:CDS | 40.0% | |
| CTGTGATGCAGTTTATGGAA+TGG | - | chr1_2:53001666-53001685 | Msa0076720:CDS | 40.0% | |
| ATGCAGTTTATGGAATGGGT+GGG | - | chr1_2:53001671-53001690 | Msa0076720:CDS | 40.0% | |
| TACAAGCGAAGTGAAACTAC+CGG | - | chr1_2:53002022-53002041 | Msa0076720:CDS | 40.0% | |
| AACTACCGGAAAATGAAAGC+AGG | - | chr1_2:53002036-53002055 | Msa0076720:CDS | 40.0% | |
| ACTTTCCTCCGAAATGAATG+TGG | - | chr1_2:53002074-53002093 | Msa0076720:CDS | 40.0% | |
| GCATTTGGCCACATTCATTT+CGG | + | chr1_2:53002085-53002104 | None:intergenic | 40.0% | |
| TACAGTGACGGTTATGGGAA+CGG | + | chr1_2:52998577-52998596 | None:intergenic | 45.0% | |
| !! | GAAATGAGAGGGTTTTGGTG+GGG | + | chr1_2:52998623-52998642 | None:intergenic | 45.0% |
| !! | GAGAAATGAGAGGGTTTTGG+TGG | + | chr1_2:52998625-52998644 | None:intergenic | 45.0% |
| GAAGCCATCGTTGTTCTTCA+CGG | + | chr1_2:52998728-52998747 | None:intergenic | 45.0% | |
| GAATCGATGGAATCGTGAAC+GGG | - | chr1_2:52998776-52998795 | Msa0076720:three_prime_UTR | 45.0% | |
| TCGGAAGACGTAGAAGAAGA+AGG | + | chr1_2:52998876-52998895 | None:intergenic | 45.0% | |
| TTCTTCTACGTCTTCCGATG+CGG | - | chr1_2:52998878-52998897 | Msa0076720:three_prime_UTR | 45.0% | |
| !! | TTGAGAGTGGTTCTAGTCAG+AGG | - | chr1_2:52998952-52998971 | Msa0076720:intron | 45.0% |
| GTTAGTGCTTGAGGAGGAAA+AGG | - | chr1_2:52998977-52998996 | Msa0076720:intron | 45.0% | |
| GGAGGAAAAGGAAGATGAAG+TGG | - | chr1_2:52998989-52999008 | Msa0076720:three_prime_UTR | 45.0% | |
| TGTTGAGAAACCTGCTGCTA+AGG | - | chr1_2:52999055-52999074 | Msa0076720:three_prime_UTR | 45.0% | |
| ! | CTCTTTTCAACCTTAGCAGC+AGG | + | chr1_2:52999068-52999087 | None:intergenic | 45.0% |
| CTGCTGCTAAGGTTGAAAAG+AGG | - | chr1_2:52999066-52999085 | Msa0076720:three_prime_UTR | 45.0% | |
| ! | AAGAGGACTGTTTTGCGAAC+AGG | - | chr1_2:52999083-52999102 | Msa0076720:three_prime_UTR | 45.0% |
| !! | GTTTTGCGAACAGGTTCTGA+AGG | - | chr1_2:52999092-52999111 | Msa0076720:three_prime_UTR | 45.0% |
| !! | AACAGGTTCTGAAGGAGAAG+AGG | - | chr1_2:52999100-52999119 | Msa0076720:intron | 45.0% |
| ! | ATTGGGATTTTACTCGGGTG+AGG | - | chr1_2:52999278-52999297 | Msa0076720:intron | 45.0% |
| ! | TTACTGCGTGTTTGGATTGG+CGG | - | chr1_2:52999431-52999450 | Msa0076720:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1_2:52999844-52999863 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1_2:52999844-52999863 | Msa0076720:intron | 45.0% |
| TTCAATGTGACCACATGTGC+TGG | + | chr1_2:53000264-53000283 | None:intergenic | 45.0% | |
| TCTACACGTTGGTATCGTGT+CGG | - | chr1_2:53000315-53000334 | Msa0076720:intron | 45.0% | |
| ! | ATGCCATGTCTCTAAGGGAT+TGG | - | chr1_2:53000374-53000393 | Msa0076720:intron | 45.0% |
| TGACCAATCCCTTAGAGACA+TGG | + | chr1_2:53000380-53000399 | None:intergenic | 45.0% | |
| !! | TAAGCTTTTAGGTGCAAGCC+TGG | - | chr1_2:53000571-53000590 | Msa0076720:intron | 45.0% |
| !! | AAGCTTTTAGGTGCAAGCCT+GGG | - | chr1_2:53000572-53000591 | Msa0076720:intron | 45.0% |
| AGAGGTTCAGCAAAAAGTCG+TGG | - | chr1_2:53000723-53000742 | Msa0076720:CDS | 45.0% | |
| GAGGTTCAGCAAAAAGTCGT+GGG | - | chr1_2:53000724-53000743 | Msa0076720:CDS | 45.0% | |
| ! | GATGGGATGCTTCTGTTTCT+TGG | + | chr1_2:53000759-53000778 | None:intergenic | 45.0% |
| CAAGGAGGAAAACTCTTGGA+TGG | + | chr1_2:53000777-53000796 | None:intergenic | 45.0% | |
| ! | CATCCAAGAGTTTTCCTCCT+TGG | - | chr1_2:53000775-53000794 | Msa0076720:CDS | 45.0% |
| TTCCCAAGGAGGAAAACTCT+TGG | + | chr1_2:53000781-53000800 | None:intergenic | 45.0% | |
| ACCATCAAGACTTTCGACGA+AGG | - | chr1_2:53000815-53000834 | Msa0076720:CDS | 45.0% | |
| ACCTTCGTCGAAAGTCTTGA+TGG | + | chr1_2:53000819-53000838 | None:intergenic | 45.0% | |
| ! | CGACGAAGGTTAGAGTTGAT+AGG | - | chr1_2:53000829-53000848 | Msa0076720:CDS | 45.0% |
| !! | AGTTGATAGGGGCAAGAACA+AGG | - | chr1_2:53000842-53000861 | Msa0076720:intron | 45.0% |
| TACCTTGCCCAGAACATTGA+AGG | + | chr1_2:53000884-53000903 | None:intergenic | 45.0% | |
| !! | GGTTGTTTTGTTCCTCCAAC+TGG | - | chr1_2:53001029-53001048 | Msa0076720:intron | 45.0% |
| !! | TGTTTTGTTCCTCCAACTGG+AGG | - | chr1_2:53001032-53001051 | Msa0076720:intron | 45.0% |
| AGAGTATGAGAACCTCCAGT+TGG | + | chr1_2:53001047-53001066 | None:intergenic | 45.0% | |
| GGATGAATTGGGATTAGGAG+AGG | + | chr1_2:53001124-53001143 | None:intergenic | 45.0% | |
| GCAGCTTCATTGGAGTCATT+GGG | + | chr1_2:53001348-53001367 | None:intergenic | 45.0% | |
| TGCTGAGCTCTTCCATGTAA+TGG | + | chr1_2:53001419-53001438 | None:intergenic | 45.0% | |
| GCACAACTATCCCTTACTTG+AGG | + | chr1_2:53001577-53001596 | None:intergenic | 45.0% | |
| GATGCAGTTTATGGAATGGG+TGG | - | chr1_2:53001670-53001689 | Msa0076720:CDS | 45.0% | |
| TGCCCATATTGTGAAGGTCT+AGG | - | chr1_2:53001707-53001726 | Msa0076720:CDS | 45.0% | |
| GCCCATATTGTGAAGGTCTA+GGG | - | chr1_2:53001708-53001727 | Msa0076720:CDS | 45.0% | |
| GCCCTAGACCTTCACAATAT+GGG | + | chr1_2:53001712-53001731 | None:intergenic | 45.0% | |
| TGCCCTAGACCTTCACAATA+TGG | + | chr1_2:53001713-53001732 | None:intergenic | 45.0% | |
| TTTGTGTCGAGGGAAAACGA+TGG | - | chr1_2:53001745-53001764 | Msa0076720:CDS | 45.0% | |
| TTTGGCCACATTCATTTCGG+AGG | + | chr1_2:53002082-53002101 | None:intergenic | 45.0% | |
| TTTGGTGGGGAAAGAGAGTG+TGG | + | chr1_2:52998610-52998629 | None:intergenic | 50.0% | |
| AATGGAGCAGTGAGCGGTAA+GGG | + | chr1_2:52998679-52998698 | None:intergenic | 50.0% | |
| CGCAACATTCGAAACCGCAT+CGG | + | chr1_2:52998895-52998914 | None:intergenic | 50.0% | |
| CGATGCGGTTTCGAATGTTG+CGG | - | chr1_2:52998893-52998912 | Msa0076720:intron | 50.0% | |
| GAATGTTGCGGCATTGCTAC+AGG | - | chr1_2:52998905-52998924 | Msa0076720:intron | 50.0% | |
| !! | GGCATTGCTACAGGTGTTGA+AGG | - | chr1_2:52998914-52998933 | Msa0076720:intron | 50.0% |
| !! | AGAGTGGTTCTAGTCAGAGG+AGG | - | chr1_2:52998955-52998974 | Msa0076720:intron | 50.0% |
| TCAGAGGAGGTTAGTGCTTG+AGG | - | chr1_2:52998968-52998987 | Msa0076720:intron | 50.0% | |
| ACGTCATGATCCCATCCTCA+GGG | + | chr1_2:52999956-52999975 | None:intergenic | 50.0% | |
| !! | TGCTGGTGTTGTGTAGGTGA+TGG | + | chr1_2:53000247-53000266 | None:intergenic | 50.0% |
| !! | CACATGTGCTGGTGTTGTGT+AGG | + | chr1_2:53000253-53000272 | None:intergenic | 50.0% |
| CTACACAACACCAGCACATG+TGG | - | chr1_2:53000251-53000270 | Msa0076720:intron | 50.0% | |
| CTACACGTTGGTATCGTGTC+GGG | - | chr1_2:53000316-53000335 | Msa0076720:intron | 50.0% | |
| TTCCTCCTTGGGAAAATCGG+TGG | - | chr1_2:53000787-53000806 | Msa0076720:CDS | 50.0% | |
| TCCTCCTTGGGAAAATCGGT+GGG | - | chr1_2:53000788-53000807 | Msa0076720:CDS | 50.0% | |
| !!! | TCTTCCCACCGATTTTCCCA+AGG | + | chr1_2:53000795-53000814 | None:intergenic | 50.0% |
| GATAGGGGCAAGAACAAGGA+CGG | - | chr1_2:53000846-53000865 | Msa0076720:intron | 50.0% | |
| ! | TGCCTTCAATGTTCTGGGCA+AGG | - | chr1_2:53000879-53000898 | Msa0076720:intron | 50.0% |
| GTATGAGAACCTCCAGTTGG+AGG | + | chr1_2:53001044-53001063 | None:intergenic | 50.0% | |
| CGCAGCTTCATTGGAGTCAT+TGG | + | chr1_2:53001349-53001368 | None:intergenic | 50.0% | |
| CTCAACTCTCGCAGCTTCAT+TGG | + | chr1_2:53001358-53001377 | None:intergenic | 50.0% | |
| CAATGAAGCTGCGAGAGTTG+AGG | - | chr1_2:53001356-53001375 | Msa0076720:intron | 50.0% | |
| GTTTATGGAATGGGTGGGTG+AGG | - | chr1_2:53001676-53001695 | Msa0076720:CDS | 50.0% | |
| TCGAGGGAAAACGATGGTGT+AGG | - | chr1_2:53001751-53001770 | Msa0076720:CDS | 50.0% | |
| GTGACGGTTATGGGAACGGT+AGG | + | chr1_2:52998573-52998592 | None:intergenic | 55.0% | |
| GAATGGAGCAGTGAGCGGTA+AGG | + | chr1_2:52998680-52998699 | None:intergenic | 55.0% | |
| ATCGGGAATGGAGCAGTGAG+CGG | + | chr1_2:52998685-52998704 | None:intergenic | 55.0% | |
| GTGTTCTTCGCGATCGGGAA+TGG | + | chr1_2:52998697-52998716 | None:intergenic | 55.0% | |
| GTTGTTCTTCACGGAGCCAG+CGG | + | chr1_2:52998719-52998738 | None:intergenic | 55.0% | |
| GGCTCCGTGAAGAACAACGA+TGG | - | chr1_2:52998721-52998740 | Msa0076720:three_prime_UTR | 55.0% | |
| AGAACAACGATGGCTTCGCG+AGG | - | chr1_2:52998731-52998750 | Msa0076720:three_prime_UTR | 55.0% | |
| GGATTCGCGAGGAGAATCGA+TGG | - | chr1_2:52998763-52998782 | Msa0076720:three_prime_UTR | 55.0% | |
| GAGGAGGTTAGTGCTTGAGG+AGG | - | chr1_2:52998971-52998990 | Msa0076720:intron | 55.0% | |
| ! | GGGATTTTACTCGGGTGAGG+AGG | - | chr1_2:52999281-52999300 | Msa0076720:intron | 55.0% |
| TTACTCGGGTGAGGAGGACA+TGG | - | chr1_2:52999287-52999306 | Msa0076720:intron | 55.0% | |
| CTGAGCGTGCTGTGAAGACT+TGG | - | chr1_2:52999334-52999353 | Msa0076720:intron | 55.0% | |
| GACGTCATGATCCCATCCTC+AGG | + | chr1_2:52999957-52999976 | None:intergenic | 55.0% | |
| !!! | TCCCACCGATTTTCCCAAGG+AGG | + | chr1_2:53000792-53000811 | None:intergenic | 55.0% |
| TGAAGCTGCGAGAGTTGAGG+TGG | - | chr1_2:53001359-53001378 | Msa0076720:intron | 55.0% | |
| CAGCGGTGTTCTTCGCGATC+GGG | + | chr1_2:52998702-52998721 | None:intergenic | 60.0% | |
| CCAGCGGTGTTCTTCGCGAT+CGG | + | chr1_2:52998703-52998722 | None:intergenic | 60.0% | |
| GATGGCTTCGCGAGGAGCAA+CGG | - | chr1_2:52998739-52998758 | Msa0076720:three_prime_UTR | 60.0% | |
| GTCTTCGTTGGGCATCCCTG+AGG | - | chr1_2:52999938-52999957 | Msa0076720:CDS | 60.0% | |
| TCGTTGGGCATCCCTGAGGA+TGG | - | chr1_2:52999942-52999961 | Msa0076720:CDS | 60.0% | |
| CGTTGGGCATCCCTGAGGAT+GGG | - | chr1_2:52999943-52999962 | Msa0076720:CDS | 60.0% | |
| CCGATCGCGAAGAACACCGC+TGG | - | chr1_2:52998700-52998719 | Msa0076720:three_prime_UTR | 65.0% | |
| ! | GGAGCAACGGTGGATTCGCG+AGG | - | chr1_2:52998752-52998771 | Msa0076720:three_prime_UTR | 65.0% |
| GGCTTCGCGAGGAGCAACGG+TGG | - | chr1_2:52998742-52998761 | Msa0076720:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 52998551 | 53002239 | 52998551 | ID=Msa0076720;Name=Msa0076720 |
| chr1_2 | mRNA | 52998551 | 53002239 | 52998551 | ID=Msa0076720-mRNA-1;Parent=Msa0076720;Name=Msa0076720-mRNA-1;_AED=0.08;_eAED=0.08;_QI=4|1|1|1|0.66|0.57|7|558|334 |
| chr1_2 | exon | 52998551 | 52998899 | 52998551 | ID=Msa0076720-mRNA-1:exon:16405;Parent=Msa0076720-mRNA-1 |
| chr1_2 | exon | 52998985 | 52999113 | 52998985 | ID=Msa0076720-mRNA-1:exon:16404;Parent=Msa0076720-mRNA-1 |
| chr1_2 | exon | 52999211 | 52999248 | 52999211 | ID=Msa0076720-mRNA-1:exon:16403;Parent=Msa0076720-mRNA-1 |
| chr1_2 | exon | 52999872 | 53000111 | 52999872 | ID=Msa0076720-mRNA-1:exon:16402;Parent=Msa0076720-mRNA-1 |
| chr1_2 | exon | 53000723 | 53000851 | 53000723 | ID=Msa0076720-mRNA-1:exon:16401;Parent=Msa0076720-mRNA-1 |
| chr1_2 | exon | 53001431 | 53001526 | 53001431 | ID=Msa0076720-mRNA-1:exon:16400;Parent=Msa0076720-mRNA-1 |
| chr1_2 | exon | 53001654 | 53002239 | 53001654 | ID=Msa0076720-mRNA-1:exon:16399;Parent=Msa0076720-mRNA-1 |
| chr1_2 | five_prime_UTR | 53002236 | 53002239 | 53002236 | ID=Msa0076720-mRNA-1:five_prime_utr;Parent=Msa0076720-mRNA-1 |
| chr1_2 | CDS | 53001654 | 53002235 | 53001654 | ID=Msa0076720-mRNA-1:cds;Parent=Msa0076720-mRNA-1 |
| chr1_2 | CDS | 53001431 | 53001526 | 53001431 | ID=Msa0076720-mRNA-1:cds;Parent=Msa0076720-mRNA-1 |
| chr1_2 | CDS | 53000723 | 53000851 | 53000723 | ID=Msa0076720-mRNA-1:cds;Parent=Msa0076720-mRNA-1 |
| chr1_2 | CDS | 52999914 | 53000111 | 52999914 | ID=Msa0076720-mRNA-1:cds;Parent=Msa0076720-mRNA-1 |
| chr1_2 | three_prime_UTR | 52999872 | 52999913 | 52999872 | ID=Msa0076720-mRNA-1:three_prime_utr;Parent=Msa0076720-mRNA-1 |
| chr1_2 | three_prime_UTR | 52999211 | 52999248 | 52999211 | ID=Msa0076720-mRNA-1:three_prime_utr;Parent=Msa0076720-mRNA-1 |
| chr1_2 | three_prime_UTR | 52998985 | 52999113 | 52998985 | ID=Msa0076720-mRNA-1:three_prime_utr;Parent=Msa0076720-mRNA-1 |
| chr1_2 | three_prime_UTR | 52998551 | 52998899 | 52998551 | ID=Msa0076720-mRNA-1:three_prime_utr;Parent=Msa0076720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
