Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075340 | XP_003625285.1 | 97.872 | 188 | 3 | 1 | 1 | 188 | 1 | 187 | 2.91e-133 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075340 | sp|Q9FG36|TRL31_ARATH | 61.728 | 162 | 56 | 3 | 31 | 188 | 51 | 210 | 2.36e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075340 | G7KVF9 | 97.872 | 188 | 3 | 1 | 1 | 188 | 1 | 187 | 1.39e-133 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006050 | Msa1075340 | 0.800286 | 1.547877e-48 | -8.615850e-47 |
| Msa0076720 | Msa1075340 | 0.808108 | 3.640949e-50 | -8.615850e-47 |
| Msa0688110 | Msa1075340 | 0.803006 | 4.282694e-49 | -8.615850e-47 |
| Msa0124660 | Msa1075340 | 0.827179 | 1.804408e-54 | -8.615850e-47 |
| Msa0182640 | Msa1075340 | 0.800161 | 1.641218e-48 | -8.615850e-47 |
| Msa0382590 | Msa1075340 | 0.805296 | 1.429469e-49 | -8.615850e-47 |
| Msa0432720 | Msa1075340 | 0.838221 | 3.270171e-57 | -8.615850e-47 |
| Msa1075340 | Msa1162730 | 0.890922 | 6.356967e-74 | -8.615850e-47 |
| Msa1075340 | Msa1293050 | 0.800529 | 1.380820e-48 | -8.615850e-47 |
| Msa1075340 | Msa1354090 | 0.818426 | 1.972352e-52 | -8.615850e-47 |
| Msa1075340 | Msa1434660 | 0.815006 | 1.153076e-51 | -8.615850e-47 |
| Msa1075340 | Msa1440220 | 0.811195 | 7.904809e-51 | -8.615850e-47 |
| Msa0242290 | Msa1075340 | 0.809604 | 1.743492e-50 | -8.615850e-47 |
| Msa0525270 | Msa1075340 | 0.845568 | 3.745323e-59 | -8.615850e-47 |
| Msa0525280 | Msa1075340 | 0.839183 | 1.845131e-57 | -8.615850e-47 |
| Msa0944690 | Msa1075340 | 0.824818 | 6.568720e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075340 | MtrunA17_Chr7g0258871 | 97.872 | 188 | 3 | 1 | 1 | 188 | 1 | 187 | 2.67e-137 | 380 |
| Msa1075340 | MtrunA17_Chr1g0171001 | 50.450 | 111 | 52 | 1 | 76 | 186 | 79 | 186 | 2.48e-34 | 120 |
| Msa1075340 | MtrunA17_Chr3g0125821 | 26.115 | 157 | 97 | 4 | 21 | 170 | 15 | 159 | 6.08e-13 | 63.9 |
| Msa1075340 | MtrunA17_Chr8g0360031 | 28.283 | 99 | 66 | 2 | 72 | 170 | 69 | 162 | 4.62e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075340 | AT5G06690.1 | 61.728 | 162 | 56 | 3 | 31 | 188 | 51 | 210 | 2.40e-69 | 210 |
| Msa1075340 | AT5G04260.1 | 57.025 | 121 | 52 | 0 | 66 | 186 | 68 | 188 | 2.90e-46 | 150 |
| Msa1075340 | AT5G06690.2 | 55.645 | 124 | 49 | 3 | 31 | 150 | 51 | 172 | 4.52e-43 | 143 |
| Msa1075340 | AT5G06690.4 | 55.645 | 124 | 49 | 3 | 31 | 150 | 51 | 172 | 5.64e-43 | 143 |
| Msa1075340 | AT5G06690.3 | 47.059 | 102 | 48 | 3 | 31 | 128 | 51 | 150 | 1.03e-26 | 99.8 |
| Msa1075340 | AT3G15360.1 | 30.303 | 99 | 64 | 2 | 72 | 170 | 84 | 177 | 1.34e-12 | 63.9 |
| Msa1075340 | AT1G19730.1 | 33.708 | 89 | 54 | 2 | 84 | 172 | 20 | 103 | 2.57e-11 | 58.5 |
Find 41 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATCCACATAATAAAATT+TGG | 0.205819 | 7_2:+73511923 | None:intergenic |
| GCTTCAAATAGATGCATTTC+CGG | 0.251648 | 7_2:+73512184 | None:intergenic |
| CTATAATAGACATAACCTTT+TGG | 0.308619 | 7_2:+73513909 | None:intergenic |
| CCAGAAAATGCCAACAATTC+AGG | 0.318570 | 7_2:-73511768 | Msa1075340:intron |
| AAAATGAAATGATTAATTCT+AGG | 0.326630 | 7_2:+73513983 | None:intergenic |
| CAAAAGGTTATGTCTATTAT+AGG | 0.327245 | 7_2:-73513908 | Msa1075340:exon |
| CAATGACTAGCCAGCCCTTA+TGG | 0.332185 | 7_2:+73511601 | None:intergenic |
| TTGTGTCGTAAGAGTTGTTT+TGG | 0.332377 | 7_2:-73513797 | Msa1075340:CDS |
| AGTAATAAAAGAAATAAATT+AGG | 0.332695 | 7_2:+73511538 | None:intergenic |
| ATGATTAATTCTAGGTGTTT+TGG | 0.336722 | 7_2:+73513991 | None:intergenic |
| ATGATGATGATGGCTAATTA+AGG | 0.360350 | 7_2:+73513956 | None:intergenic |
| AAGACCAAGTTCAATAGAAA+TGG | 0.379592 | 7_2:-73513693 | Msa1075340:CDS |
| TGTTTGCAGCTTTGGAAAGA+TGG | 0.388102 | 7_2:-73511651 | Msa1075340:intron |
| GCATGTAATAAGAAAATAGT+AGG | 0.390034 | 7_2:+73514093 | None:intergenic |
| CTCAGTGCTTTGCAAGTGGC+AGG | 0.393125 | 7_2:-73513829 | Msa1075340:CDS |
| CATCTATTTGAAGCCAAAGT+TGG | 0.425150 | 7_2:-73512175 | Msa1075340:CDS |
| GAAGTGATTGGAGGCCATAA+GGG | 0.439766 | 7_2:-73511615 | Msa1075340:CDS |
| GCTTCCATTTCTATTGAACT+TGG | 0.444492 | 7_2:+73513689 | None:intergenic |
| GCTATAATGATTAACAATGT+AGG | 0.446247 | 7_2:+73511407 | None:intergenic |
| AGAAGTGATTGGAGGCCATA+AGG | 0.448140 | 7_2:-73511616 | Msa1075340:CDS |
| AAATACCAGTCAATAATGAT+AGG | 0.456728 | 7_2:+73513608 | None:intergenic |
| GAGATGAAAGAAGAAGTGAT+TGG | 0.459326 | 7_2:-73511627 | Msa1075340:CDS |
| TGAGGACGCACCTGAATTGT+TGG | 0.470980 | 7_2:+73511758 | None:intergenic |
| ATAGGATGGCTGCTTGGTGC+CGG | 0.493739 | 7_2:-73512203 | Msa1075340:intron |
| TGAAGTTGGATGTTAAGAAA+AGG | 0.494064 | 7_2:+73514025 | None:intergenic |
| TCACAAGATAATGATGATGA+TGG | 0.497596 | 7_2:+73513946 | None:intergenic |
| TGATTGGAGGCCATAAGGGC+TGG | 0.518680 | 7_2:-73511611 | Msa1075340:CDS |
| GTTAAGAAAAGGAAAGAGAA+TGG | 0.525306 | 7_2:+73514036 | None:intergenic |
| TCAAATATAGGATGGCTGCT+TGG | 0.529801 | 7_2:-73512209 | Msa1075340:intron |
| TCAGTGCTTTGCAAGTGGCA+GGG | 0.535743 | 7_2:-73513828 | Msa1075340:CDS |
| ATTCCTCAGTGCTTTGCAAG+TGG | 0.552145 | 7_2:-73513833 | Msa1075340:CDS |
| CTGAGCCTATCATTATTGAC+TGG | 0.566128 | 7_2:-73513613 | Msa1075340:intron |
| ATCATATATATAAAACAAAG+AGG | 0.581491 | 7_2:-73511443 | Msa1075340:three_prime_UTR |
| TGGTGGACAAGGCATGAAGT+TGG | 0.584521 | 7_2:+73514011 | None:intergenic |
| ATGAAAGAAGAAGTGATTGG+AGG | 0.597943 | 7_2:-73511624 | Msa1075340:CDS |
| TAGAAGGAAGAATTTACGTG+TGG | 0.602557 | 7_2:-73513741 | Msa1075340:CDS |
| CCACGCTTGACTAATGTCTG+AGG | 0.613310 | 7_2:+73511891 | None:intergenic |
| CCTCAGACATTAGTCAAGCG+TGG | 0.642739 | 7_2:-73511891 | Msa1075340:CDS |
| ATTTACGTGTGGAAGCTATG+TGG | 0.678095 | 7_2:-73513730 | Msa1075340:CDS |
| CTGCCACTTGCAAAGCACTG+AGG | 0.688803 | 7_2:+73513830 | None:intergenic |
| GAATACACTGTTCATCTCTG+TGG | 0.691310 | 7_2:+73513852 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGCAATTTTAATAAAAT+TGG | - | chr7_2:73513067-73513086 | Msa1075340:intron | 10.0% |
| !! | ATAAATTATTACAAATGAAA+AGG | + | chr7_2:73513142-73513161 | None:intergenic | 10.0% |
| !!! | TATACCTATATATAAAATTT+TGG | + | chr7_2:73513205-73513224 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTTCTTTTATTG+TGG | + | chr7_2:73513780-73513799 | None:intergenic | 10.0% |
| !! | AGTAATAAAAGAAATAAATT+AGG | + | chr7_2:73513953-73513972 | None:intergenic | 10.0% |
| !! | AAAATGAAATGATTAATTCT+AGG | + | chr7_2:73511508-73511527 | None:intergenic | 15.0% |
| !! | AACCATACAAAAAAATTTAA+AGG | + | chr7_2:73512031-73512050 | None:intergenic | 15.0% |
| !!! | TAAATTTTTTTGTATGGTTA+CGG | - | chr7_2:73512032-73512051 | Msa1075340:intron | 15.0% |
| !!! | ATCATTTTTCAATTTCAAAA+TGG | - | chr7_2:73512246-73512265 | Msa1075340:intron | 15.0% |
| !! | AAACAAAGTTAAAGTAAATA+TGG | + | chr7_2:73512280-73512299 | None:intergenic | 15.0% |
| !!! | TTGTTTAACTTTAAAATATG+AGG | - | chr7_2:73512294-73512313 | Msa1075340:intron | 15.0% |
| !! | TAAGTTCTTATTAAAATATG+AGG | - | chr7_2:73512375-73512394 | Msa1075340:intron | 15.0% |
| !! | TTACTTATTGTAACATAATA+AGG | + | chr7_2:73512716-73512735 | None:intergenic | 15.0% |
| !!! | ATTGGTTAATTATTTTCTTA+TGG | + | chr7_2:73513488-73513507 | None:intergenic | 15.0% |
| !! | ATAAGAAAATAATTAACCAA+TGG | - | chr7_2:73513487-73513506 | Msa1075340:intron | 15.0% |
| !! | TAAGAAAATAATTAACCAAT+GGG | - | chr7_2:73513488-73513507 | Msa1075340:intron | 15.0% |
| !! | TATATAGATTAATTTAGTTG+AGG | + | chr7_2:73513751-73513770 | None:intergenic | 15.0% |
| !!! | CTTTTTTAACATACATTTTT+TGG | + | chr7_2:73513994-73514013 | None:intergenic | 15.0% |
| !! | ATCATATATATAAAACAAAG+AGG | - | chr7_2:73514045-73514064 | Msa1075340:five_prime_UTR | 15.0% |
| !! | AAAAACAAAAGAAGATTAGA+AGG | - | chr7_2:73511731-73511750 | Msa1075340:intron | 20.0% |
| !!! | TTATGAAAGATAATTTGTCA+AGG | + | chr7_2:73511945-73511964 | None:intergenic | 20.0% |
| !! | ACAAAAAAATTTAAAGGCTA+AGG | + | chr7_2:73512025-73512044 | None:intergenic | 20.0% |
| !!! | AGCCTTTAAATTTTTTTGTA+TGG | - | chr7_2:73512026-73512045 | Msa1075340:intron | 20.0% |
| !! | TTAAAACCATTAACATTTGT+AGG | + | chr7_2:73513031-73513050 | None:intergenic | 20.0% |
| !!! | CTTCTAATTTTATTCTTACA+TGG | + | chr7_2:73513169-73513188 | None:intergenic | 20.0% |
| !!! | CACACCAAAATTTTATATAT+AGG | - | chr7_2:73513198-73513217 | Msa1075340:intron | 20.0% |
| !!! | AACTTTGTTTTCTCAAATAT+AGG | - | chr7_2:73513267-73513286 | Msa1075340:intron | 20.0% |
| !!! | ATGATTTTGTTTTGAAAGAA+TGG | + | chr7_2:73513434-73513453 | None:intergenic | 20.0% |
| !!! | AATTATTTTCTTATGGTTGA+AGG | + | chr7_2:73513481-73513500 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTGGTGTTAAGA+CGG | + | chr7_2:73511427-73511446 | None:intergenic | 25.0% |
| !! | ATGATTAATTCTAGGTGTTT+TGG | + | chr7_2:73511500-73511519 | None:intergenic | 25.0% |
| !! | CTATAATAGACATAACCTTT+TGG | + | chr7_2:73511582-73511601 | None:intergenic | 25.0% |
| ! | CAAAAGGTTATGTCTATTAT+AGG | - | chr7_2:73511580-73511599 | Msa1075340:CDS | 25.0% |
| ! | AAATACCAGTCAATAATGAT+AGG | + | chr7_2:73511883-73511902 | None:intergenic | 25.0% |
| ! | AGAAGAATGATATTTCAAAG+AGG | - | chr7_2:73512065-73512084 | Msa1075340:intron | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | chr7_2:73512146-73512165 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr7_2:73512145-73512164 | Msa1075340:intron | 25.0% |
| !!! | CTTTAAAATATGAGGTATTG+CGG | - | chr7_2:73512302-73512321 | Msa1075340:intron | 25.0% |
| !!! | TTTAAAATATGAGGTATTGC+GGG | - | chr7_2:73512303-73512322 | Msa1075340:intron | 25.0% |
| ! | AAGGATAAGATAGAAGAAAA+AGG | + | chr7_2:73512336-73512355 | None:intergenic | 25.0% |
| !! | TTTTTCTTCTATCTTATCCT+TGG | - | chr7_2:73512335-73512354 | Msa1075340:intron | 25.0% |
| ! | TATCTTATCCTTGGATAAAT+TGG | - | chr7_2:73512344-73512363 | Msa1075340:intron | 25.0% |
| !! | TTCATTTTGTTAGATTGTGA+GGG | + | chr7_2:73512518-73512537 | None:intergenic | 25.0% |
| ! | ATATTATACTGTCAACAAGA+TGG | + | chr7_2:73512682-73512701 | None:intergenic | 25.0% |
| ! | AATAAGTAAGTTAGCAGTTA+GGG | - | chr7_2:73512727-73512746 | Msa1075340:intron | 25.0% |
| ! | TTCTTGACAAAAAAGAAATG+TGG | + | chr7_2:73512808-73512827 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTCAAGAATTTCA+AGG | - | chr7_2:73512813-73512832 | Msa1075340:intron | 25.0% |
| ! | TATATGCCTACAAATGTTAA+TGG | - | chr7_2:73513022-73513041 | Msa1075340:intron | 25.0% |
| !!! | GTTTTAAAAGCAAGAAATTG+TGG | - | chr7_2:73513044-73513063 | Msa1075340:intron | 25.0% |
| ! | AAAATCTATGCATAGTTCAT+TGG | + | chr7_2:73513101-73513120 | None:intergenic | 25.0% |
| !! | TTGTTTTCTCAAATATAGGA+TGG | - | chr7_2:73513271-73513290 | Msa1075340:intron | 25.0% |
| ! | GACATCCACATAATAAAATT+TGG | + | chr7_2:73513568-73513587 | None:intergenic | 25.0% |
| !!! | ACATACATTTTTTGGCATTT+TGG | + | chr7_2:73513986-73514005 | None:intergenic | 25.0% |
| ! | GCTATAATGATTAACAATGT+AGG | + | chr7_2:73514084-73514103 | None:intergenic | 25.0% |
| !! | GAATGGTGATGAATTTTCTT+TGG | + | chr7_2:73511438-73511457 | None:intergenic | 30.0% |
| GTTAAGAAAAGGAAAGAGAA+TGG | + | chr7_2:73511455-73511474 | None:intergenic | 30.0% | |
| TGAAGTTGGATGTTAAGAAA+AGG | + | chr7_2:73511466-73511485 | None:intergenic | 30.0% | |
| !! | ATTAATTCTAGGTGTTTTGG+TGG | + | chr7_2:73511497-73511516 | None:intergenic | 30.0% |
| !! | ATGATGATGATGGCTAATTA+AGG | + | chr7_2:73511535-73511554 | None:intergenic | 30.0% |
| ! | TCACAAGATAATGATGATGA+TGG | + | chr7_2:73511545-73511564 | None:intergenic | 30.0% |
| ! | ATTTTGTCTTACAGTCCAAA+AGG | - | chr7_2:73511564-73511583 | Msa1075340:exon | 30.0% |
| !!! | GTTGTTTTGGGAACATAATA+AGG | - | chr7_2:73511704-73511723 | Msa1075340:intron | 30.0% |
| AAGACCAAGTTCAATAGAAA+TGG | - | chr7_2:73511795-73511814 | Msa1075340:intron | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr7_2:73512120-73512139 | None:intergenic | 30.0% | |
| ! | TCAATTTCAAAATGGCTTTG+AGG | - | chr7_2:73512254-73512273 | Msa1075340:intron | 30.0% |
| !! | TTAAAATATGAGGTATTGCG+GGG | - | chr7_2:73512304-73512323 | Msa1075340:intron | 30.0% |
| GATCTAATCCAATTTATCCA+AGG | + | chr7_2:73512355-73512374 | None:intergenic | 30.0% | |
| TATTAAAATATGAGGTGCAG+TGG | - | chr7_2:73512383-73512402 | Msa1075340:intron | 30.0% | |
| ATTAAAATATGAGGTGCAGT+GGG | - | chr7_2:73512384-73512403 | Msa1075340:intron | 30.0% | |
| ! | GACTGTAGTTAGATATTTTG+AGG | - | chr7_2:73512420-73512439 | Msa1075340:intron | 30.0% |
| !!! | TTGAGGATATTTTTTTGCGT+TGG | - | chr7_2:73512437-73512456 | Msa1075340:intron | 30.0% |
| !!! | TGAGGATATTTTTTTGCGTT+GGG | - | chr7_2:73512438-73512457 | Msa1075340:intron | 30.0% |
| ! | GTTCATTTTGTTAGATTGTG+AGG | + | chr7_2:73512519-73512538 | None:intergenic | 30.0% |
| CAATAAGTAAGTTAGCAGTT+AGG | - | chr7_2:73512726-73512745 | Msa1075340:intron | 30.0% | |
| AGAAATGTGGATAGATGTAT+TGG | + | chr7_2:73512795-73512814 | None:intergenic | 30.0% | |
| AGAATTTCAAGGTGAATAAG+TGG | - | chr7_2:73512824-73512843 | Msa1075340:intron | 30.0% | |
| GAATTTCAAGGTGAATAAGT+GGG | - | chr7_2:73512825-73512844 | Msa1075340:intron | 30.0% | |
| AATTTCAAGGTGAATAAGTG+GGG | - | chr7_2:73512826-73512845 | Msa1075340:intron | 30.0% | |
| CAATAAGCGTAATAGAAATG+TGG | + | chr7_2:73512934-73512953 | None:intergenic | 30.0% | |
| ! | TATGCATAGTTCATTGGTTA+AGG | + | chr7_2:73513095-73513114 | None:intergenic | 30.0% |
| TTGCATAATTGAATTCCCAT+TGG | + | chr7_2:73513506-73513525 | None:intergenic | 30.0% | |
| ! | CAGAGCCAAATTTTATTATG+TGG | - | chr7_2:73513560-73513579 | Msa1075340:intron | 30.0% |
| ! | AGTAGATGCTTGATATTTTC+TGG | - | chr7_2:73513633-73513652 | Msa1075340:CDS | 30.0% |
| ! | TTGTGTCGTAAGAGTTGTTT+TGG | - | chr7_2:73511691-73511710 | Msa1075340:intron | 35.0% |
| !! | TGTGTCGTAAGAGTTGTTTT+GGG | - | chr7_2:73511692-73511711 | Msa1075340:intron | 35.0% |
| TAGAAGGAAGAATTTACGTG+TGG | - | chr7_2:73511747-73511766 | Msa1075340:intron | 35.0% | |
| !! | CTTGGTCTTTTTGACAAATC+TGG | + | chr7_2:73511784-73511803 | None:intergenic | 35.0% |
| GCTTCCATTTCTATTGAACT+TGG | + | chr7_2:73511802-73511821 | None:intergenic | 35.0% | |
| TTAAAATATGAGGTGCAGTG+GGG | - | chr7_2:73512385-73512404 | Msa1075340:intron | 35.0% | |
| !!! | TTTTTTTGCGTTGGGCTTTT+AGG | - | chr7_2:73512446-73512465 | Msa1075340:intron | 35.0% |
| TCTAACAAAATGAACTCCGA+TGG | - | chr7_2:73512524-73512543 | Msa1075340:intron | 35.0% | |
| ACATGCATTGTTATATGCAG+GGG | + | chr7_2:73512873-73512892 | None:intergenic | 35.0% | |
| GACATGCATTGTTATATGCA+GGG | + | chr7_2:73512874-73512893 | None:intergenic | 35.0% | |
| AGACATGCATTGTTATATGC+AGG | + | chr7_2:73512875-73512894 | None:intergenic | 35.0% | |
| ! | ATGTGTGATACCAATTTTGC+AGG | - | chr7_2:73513226-73513245 | Msa1075340:intron | 35.0% |
| GCTTCAAATAGATGCATTTC+CGG | + | chr7_2:73513307-73513326 | None:intergenic | 35.0% | |
| ! | CATCTATTTGAAGCCAAAGT+TGG | - | chr7_2:73513313-73513332 | Msa1075340:intron | 35.0% |
| ! | GCAGCTAATTTTTCCAACTT+TGG | + | chr7_2:73513329-73513348 | None:intergenic | 35.0% |
| !! | ACACTAGTGACTAGTTTACT+TGG | + | chr7_2:73513363-73513382 | None:intergenic | 35.0% |
| ! | CTGAATTGTTGGCATTTTCT+GGG | + | chr7_2:73513722-73513741 | None:intergenic | 35.0% |
| GAGATGAAAGAAGAAGTGAT+TGG | - | chr7_2:73513861-73513880 | Msa1075340:CDS | 35.0% | |
| ATGAAAGAAGAAGTGATTGG+AGG | - | chr7_2:73513864-73513883 | Msa1075340:CDS | 35.0% | |
| GAATACACTGTTCATCTCTG+TGG | + | chr7_2:73511639-73511658 | None:intergenic | 40.0% | |
| ATTTACGTGTGGAAGCTATG+TGG | - | chr7_2:73511758-73511777 | Msa1075340:intron | 40.0% | |
| CTGAGCCTATCATTATTGAC+TGG | - | chr7_2:73511875-73511894 | Msa1075340:intron | 40.0% | |
| AGGCTAAGGATGACATACTT+TGG | + | chr7_2:73512011-73512030 | None:intergenic | 40.0% | |
| ! | TTGTTAGATTGTGAGGGTGT+GGG | + | chr7_2:73512512-73512531 | None:intergenic | 40.0% |
| TTTGTTAGATTGTGAGGGTG+TGG | + | chr7_2:73512513-73512532 | None:intergenic | 40.0% | |
| AACAAAATGAACTCCGATGG+AGG | - | chr7_2:73512527-73512546 | Msa1075340:intron | 40.0% | |
| ACAAAATGAACTCCGATGGA+GGG | - | chr7_2:73512528-73512547 | Msa1075340:intron | 40.0% | |
| TTTACACAAGTTCCCTCCAT+CGG | + | chr7_2:73512543-73512562 | None:intergenic | 40.0% | |
| TGCCAACTGAGTTATACTCA+CGG | - | chr7_2:73512896-73512915 | Msa1075340:intron | 40.0% | |
| ! | TGTGATACCAATTTTGCAGG+TGG | - | chr7_2:73513229-73513248 | Msa1075340:intron | 40.0% |
| AACAAGTCCACCTGCAAAAT+TGG | + | chr7_2:73513239-73513258 | None:intergenic | 40.0% | |
| TCAAATATAGGATGGCTGCT+TGG | - | chr7_2:73513279-73513298 | Msa1075340:intron | 40.0% | |
| ! | CCTGAATTGTTGGCATTTTC+TGG | + | chr7_2:73513723-73513742 | None:intergenic | 40.0% |
| CCAGAAAATGCCAACAATTC+AGG | - | chr7_2:73513720-73513739 | Msa1075340:CDS | 40.0% | |
| GCTTGAATTGTTTGCAGCTT+TGG | - | chr7_2:73513829-73513848 | Msa1075340:CDS | 40.0% | |
| !! | TGTTTGCAGCTTTGGAAAGA+TGG | - | chr7_2:73513837-73513856 | Msa1075340:CDS | 40.0% |
| !! | TTTGGCATTTTGGAGAGAGA+GGG | + | chr7_2:73513976-73513995 | None:intergenic | 40.0% |
| !! | TTTTGGCATTTTGGAGAGAG+AGG | + | chr7_2:73513977-73513996 | None:intergenic | 40.0% |
| !!! | TCTAGGTGTTTTGGTGGACA+AGG | + | chr7_2:73511491-73511510 | None:intergenic | 45.0% |
| ATTCCTCAGTGCTTTGCAAG+TGG | - | chr7_2:73511655-73511674 | Msa1075340:intron | 45.0% | |
| GTAAGTTAGCAGTTAGGGTG+AGG | - | chr7_2:73512732-73512751 | Msa1075340:intron | 45.0% | |
| GCCAACTGAGTTATACTCAC+GGG | - | chr7_2:73512897-73512916 | Msa1075340:intron | 45.0% | |
| CCAACTGAGTTATACTCACG+GGG | - | chr7_2:73512898-73512917 | Msa1075340:intron | 45.0% | |
| AGAAGTGATTGGAGGCCATA+AGG | - | chr7_2:73513872-73513891 | Msa1075340:CDS | 45.0% | |
| GAAGTGATTGGAGGCCATAA+GGG | - | chr7_2:73513873-73513892 | Msa1075340:CDS | 45.0% | |
| ! | TGGTGGACAAGGCATGAAGT+TGG | + | chr7_2:73511480-73511499 | None:intergenic | 50.0% |
| TCAGTGCTTTGCAAGTGGCA+GGG | - | chr7_2:73511660-73511679 | Msa1075340:intron | 50.0% | |
| ATTGTTATATGCAGGGGCCG+GGG | + | chr7_2:73512867-73512886 | None:intergenic | 50.0% | |
| CATTGTTATATGCAGGGGCC+GGG | + | chr7_2:73512868-73512887 | None:intergenic | 50.0% | |
| GCATTGTTATATGCAGGGGC+CGG | + | chr7_2:73512869-73512888 | None:intergenic | 50.0% | |
| CCCCGTGAGTATAACTCAGT+TGG | + | chr7_2:73512901-73512920 | None:intergenic | 50.0% | |
| CCACGCTTGACTAATGTCTG+AGG | + | chr7_2:73513600-73513619 | None:intergenic | 50.0% | |
| CCTCAGACATTAGTCAAGCG+TGG | - | chr7_2:73513597-73513616 | Msa1075340:intron | 50.0% | |
| TGAGGACGCACCTGAATTGT+TGG | + | chr7_2:73513733-73513752 | None:intergenic | 50.0% | |
| ! | CAATGACTAGCCAGCCCTTA+TGG | + | chr7_2:73513890-73513909 | None:intergenic | 50.0% |
| !! | CTGCCACTTGCAAAGCACTG+AGG | + | chr7_2:73511661-73511680 | None:intergenic | 55.0% |
| CTCAGTGCTTTGCAAGTGGC+AGG | - | chr7_2:73511659-73511678 | Msa1075340:intron | 55.0% | |
| ! | GTGAATAAGTGGGGTGTCCG+AGG | - | chr7_2:73512835-73512854 | Msa1075340:intron | 55.0% |
| !! | ATAGGATGGCTGCTTGGTGC+CGG | - | chr7_2:73513285-73513304 | Msa1075340:intron | 55.0% |
| TGATTGGAGGCCATAAGGGC+TGG | - | chr7_2:73513877-73513896 | Msa1075340:CDS | 55.0% | |
| GGTGTCCGAGGTTCGAACCC+CGG | - | chr7_2:73512847-73512866 | Msa1075340:intron | 65.0% | |
| AGGGGCCGGGGTTCGAACCT+CGG | + | chr7_2:73512855-73512874 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 73511398 | 73514112 | 73511398 | ID=Msa1075340;Name=Msa1075340 |
| chr7_2 | mRNA | 73511398 | 73514112 | 73511398 | ID=Msa1075340-mRNA-1;Parent=Msa1075340;Name=Msa1075340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=191|1|1|1|1|1|5|168|188 |
| chr7_2 | exon | 73511398 | 73511664 | 73511398 | ID=Msa1075340-mRNA-1:exon:17129;Parent=Msa1075340-mRNA-1 |
| chr7_2 | exon | 73511769 | 73511786 | 73511769 | ID=Msa1075340-mRNA-1:exon:17128;Parent=Msa1075340-mRNA-1 |
| chr7_2 | exon | 73511881 | 73511947 | 73511881 | ID=Msa1075340-mRNA-1:exon:17127;Parent=Msa1075340-mRNA-1 |
| chr7_2 | exon | 73512147 | 73512221 | 73512147 | ID=Msa1075340-mRNA-1:exon:17126;Parent=Msa1075340-mRNA-1 |
| chr7_2 | exon | 73513614 | 73514112 | 73513614 | ID=Msa1075340-mRNA-1:exon:17125;Parent=Msa1075340-mRNA-1 |
| chr7_2 | five_prime_UTR | 73513922 | 73514112 | 73513922 | ID=Msa1075340-mRNA-1:five_prime_utr;Parent=Msa1075340-mRNA-1 |
| chr7_2 | CDS | 73513614 | 73513921 | 73513614 | ID=Msa1075340-mRNA-1:cds;Parent=Msa1075340-mRNA-1 |
| chr7_2 | CDS | 73512147 | 73512221 | 73512147 | ID=Msa1075340-mRNA-1:cds;Parent=Msa1075340-mRNA-1 |
| chr7_2 | CDS | 73511881 | 73511947 | 73511881 | ID=Msa1075340-mRNA-1:cds;Parent=Msa1075340-mRNA-1 |
| chr7_2 | CDS | 73511769 | 73511786 | 73511769 | ID=Msa1075340-mRNA-1:cds;Parent=Msa1075340-mRNA-1 |
| chr7_2 | CDS | 73511566 | 73511664 | 73511566 | ID=Msa1075340-mRNA-1:cds;Parent=Msa1075340-mRNA-1 |
| chr7_2 | three_prime_UTR | 73511398 | 73511565 | 73511398 | ID=Msa1075340-mRNA-1:three_prime_utr;Parent=Msa1075340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
