AlfalfaGEDB | Msa0848760

M. sativa cultivar zhongmu-4 / Msa0848760

KEGG: K01265
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564
PFAM: PF00557.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0848760	XP_003614457.2	96.460	226	4	1	223	448	135	356	1.11e-158	462
Msa0848760	XP_003614457.2	97.222	144	4	0	1	144	1	144	3.08e-89	286

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0848760	sp\|Q9FV52\|MAP1B_ARATH	82.805	221	38	0	228	448	149	369	1.94e-135	397
Msa0848760	sp\|Q9FV52\|MAP1B_ARATH	56.934	137	56	2	9	144	23	157	3.30e-36	140

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0848760	G7JY96	96.460	226	4	1	223	448	135	356	5.31e-159	462
Msa0848760	G7JY96	97.222	144	4	0	1	144	1	144	1.47e-89	286

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0848760	0.890798	7.113895e-74	-8.615850e-47
Msa0001460	Msa0848760	0.839898	1.202650e-57	-8.615850e-47
Msa0001950	Msa0848760	0.845016	5.281157e-59	-8.615850e-47
Msa0003470	Msa0848760	0.847693	9.841843e-60	-8.615850e-47
Msa0004350	Msa0848760	0.812558	3.990801e-51	-8.615850e-47
Msa0006700	Msa0848760	0.814464	1.520509e-51	-8.615850e-47
Msa0008850	Msa0848760	0.834180	3.479843e-56	-8.615850e-47
Msa0012460	Msa0848760	0.833354	5.597093e-56	-8.615850e-47
Msa0014410	Msa0848760	0.831078	2.046698e-55	-8.615850e-47
Msa0017120	Msa0848760	0.864644	1.048005e-64	-8.615850e-47

Showing 1 to 10 of 861 entries

Previous1 2 3 4 5…87Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0848760	MtrunA17_Chr5g0422531	96.460	226	4	1	223	448	135	356	1.02e-162	462
Msa0848760	MtrunA17_Chr5g0422531	97.222	144	4	0	1	144	1	144	2.83e-93	286
Msa0848760	MtrunA17_Chr5g0402401	70.588	221	65	0	228	448	131	351	1.35e-114	340
Msa0848760	MtrunA17_Chr5g0402401	37.681	138	74	3	19	151	16	146	7.86e-15	75.5
Msa0848760	MtrunA17_Chr4g0011731	54.545	220	99	1	228	446	163	382	1.89e-81	256

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0848760	AT1G13270.1	82.805	221	38	0	228	448	149	369	1.97e-136	397
Msa0848760	AT1G13270.1	56.934	137	56	2	9	144	23	157	3.35e-37	140
Msa0848760	AT3G25740.1	74.779	226	50	3	223	446	121	341	1.47e-118	350
Msa0848760	AT3G25740.1	59.551	89	36	0	59	147	45	133	2.18e-23	101
Msa0848760	AT4G37040.1	67.873	221	71	0	228	448	130	350	9.08e-108	323
Msa0848760	AT4G37040.1	38.849	139	81	3	14	151	10	145	8.11e-17	82.0
Msa0848760	AT2G45240.1	55.000	220	98	1	228	446	164	383	1.22e-81	258
Msa0848760	AT1G13270.2	85.950	121	17	0	231	351	152	272	8.96e-72	228
Msa0848760	AT1G13270.2	56.934	137	56	2	9	144	23	157	1.10e-37	139
Msa0848760	AT2G45240.2	54.140	157	72	0	228	384	164	320	1.49e-55	187

Showing 1 to 10 of 12 entries

Previous1 2Next

Find 117 sgRNAs with CRISPR-Local

Find 701 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGCCTCCATTAAGGCG+TGG	0.649969	5_4:-34588923	Msa0848760:CDS
AAAGTATGGCTACGGTGTAG+TGG	0.575901	5_4:-34582126	Msa0848760:CDS
AACATGCCGATACAGAACAG+TGG	0.742758	5_4:-34587410	Msa0848760:CDS
AAGTGAAGGTCGAAACGAAA+AGG	0.454304	5_4:-34588008	Msa0848760:CDS
AATCATACGTGCTCTTGTAC+CGG	0.530121	5_4:+34587296	None:intergenic
AATGGTATGCTCAAACTGTG+CGG	0.737234	5_4:+34581144	None:intergenic
AATTAACAAACCGGGAAACG+TGG	0.607568	5_4:+34591139	None:intergenic
ACATCTGAGCCTACATAAGG+AGG	0.644417	5_4:+34588857	None:intergenic
ACCATTCTGATAACAAGAAC+TGG	0.435387	5_4:-34581127	Msa0848760:CDS
ACCGAAGAGTGCTTGGAGAA+AGG	0.543493	5_4:-34584942	Msa0848760:CDS

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAACGTCACCTTAAGTTTA+GGG	+	chr5_4:34581117-34581136	None:intergenic	30.0%
TAAAACGTCACCTTAAGTTT+AGG	+	chr5_4:34581118-34581137	None:intergenic	30.0%
TTGTTAAATAGCAGCTATAG+TGG	-	chr5_4:34581271-34581290	Msa0848760:intron	30.0%
TAAATTCTGATACGCTATAG+CGG	+	chr5_4:34581304-34581323	None:intergenic	30.0%
TAATTACAAACGTGATCAAC+AGG	+	chr5_4:34581481-34581500	None:intergenic	30.0%
GTATACCCTACTTGAATTAA+AGG	+	chr5_4:34581566-34581585	None:intergenic	30.0%
ATGTTGTAAATCTCAGATTG+CGG	-	chr5_4:34581619-34581638	Msa0848760:intron	30.0%
AAAATGCTATTGCAGTATAG+TGG	-	chr5_4:34581651-34581670	Msa0848760:CDS	30.0%
AAGAAAAGAAGAACGAAAAG+AGG	-	chr5_4:34582184-34582203	Msa0848760:intron	30.0%
AATGTTTGATTCTCCAATTG+TGG	+	chr5_4:34582210-34582229	None:intergenic	30.0%

Showing 1 to 10 of 701 entries

Previous1 2 3 4 5…71Next

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	34580543	34591276	34580543	ID=Msa0848760;Name=Msa0848760
chr5_4	mRNA	34580543	34591276	34580543	ID=Msa0848760-mRNA-1;Parent=Msa0848760;Name=Msa0848760-mRNA-1;_AED=0.10;_eAED=0.10;_QI=24\|0.69\|0.78\|0.78\|0.92\|0.85\|14\|460\|448
chr5_4	exon	34580543	34580998	34580543	ID=Msa0848760-mRNA-1:exon:11672;Parent=Msa0848760-mRNA-1
chr5_4	exon	34581098	34581247	34581098	ID=Msa0848760-mRNA-1:exon:11671;Parent=Msa0848760-mRNA-1
chr5_4	exon	34581646	34581693	34581646	ID=Msa0848760-mRNA-1:exon:11670;Parent=Msa0848760-mRNA-1
chr5_4	exon	34582063	34582160	34582063	ID=Msa0848760-mRNA-1:exon:11669;Parent=Msa0848760-mRNA-1
chr5_4	exon	34584888	34584967	34584888	ID=Msa0848760-mRNA-1:exon:11668;Parent=Msa0848760-mRNA-1
chr5_4	exon	34585184	34585255	34585184	ID=Msa0848760-mRNA-1:exon:11667;Parent=Msa0848760-mRNA-1
chr5_4	exon	34586071	34586112	34586071	ID=Msa0848760-mRNA-1:exon:11666;Parent=Msa0848760-mRNA-1
chr5_4	exon	34586200	34586361	34586200	ID=Msa0848760-mRNA-1:exon:11665;Parent=Msa0848760-mRNA-1
chr5_4	exon	34587290	34587446	34587290	ID=Msa0848760-mRNA-1:exon:11664;Parent=Msa0848760-mRNA-1
chr5_4	exon	34587704	34587732	34587704	ID=Msa0848760-mRNA-1:exon:11663;Parent=Msa0848760-mRNA-1
chr5_4	exon	34587952	34588041	34587952	ID=Msa0848760-mRNA-1:exon:11662;Parent=Msa0848760-mRNA-1
chr5_4	exon	34588742	34588979	34588742	ID=Msa0848760-mRNA-1:exon:11661;Parent=Msa0848760-mRNA-1
chr5_4	exon	34590952	34591033	34590952	ID=Msa0848760-mRNA-1:exon:11660;Parent=Msa0848760-mRNA-1
chr5_4	exon	34591150	34591276	34591150	ID=Msa0848760-mRNA-1:exon:11659;Parent=Msa0848760-mRNA-1
chr5_4	five_prime_UTR	34591253	34591276	34591253	ID=Msa0848760-mRNA-1:five_prime_utr;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34591150	34591252	34591150	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34590952	34591033	34590952	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34588742	34588979	34588742	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34587952	34588041	34587952	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34587704	34587732	34587704	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34587290	34587446	34587290	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34586200	34586361	34586200	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34586071	34586112	34586071	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34585184	34585255	34585184	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34584888	34584967	34584888	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34582063	34582160	34582063	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34581646	34581693	34581646	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	CDS	34581102	34581247	34581102	ID=Msa0848760-mRNA-1:cds;Parent=Msa0848760-mRNA-1
chr5_4	three_prime_UTR	34581098	34581101	34581098	ID=Msa0848760-mRNA-1:three_prime_utr;Parent=Msa0848760-mRNA-1
chr5_4	three_prime_UTR	34580543	34580998	34580543	ID=Msa0848760-mRNA-1:three_prime_utr;Parent=Msa0848760-mRNA-1

Gene Sequence

>Msa0848760

ATGGCGCTCACTGCTTCACTCGGACACTCCGCATTTCTGAAACTCTCTACATCCTTTTATGGCGACACATCACCTTCTTCTTCAATTTCTACCACGTTTCCCGGAAACCAATCATTTTCAAGAAAACAATTTGTGGTTTTTGCTCGGAAGATGTCAGGATTGGAGGAGGCCAGAAGAATCAAGAGAGAACGTGAACTTCAGGTTGTGAAGAAGGATAGAAAAGGGCCTCCATTAAGGCGTGGAAAAGTATCGCCACGTCTACCTGTCCCTGATGATATACTAAAGCCTCCTTATGTAGGCTCAGATGTACTTCCAGAAATGGGAACTGAATATCAAATTCATGATTCTGAAGGTATAGCTAAAATGAGGGCTGCAGGTGAGCTTGCAGCACGTGTCTTGAACTTCGCAGGAACTTTGGTTAGGCAGCAAGTTCTAAGTGAAGGTCGAAACGAAAAGGGATTTGTTGCATTGGTTGCACAACACGTTACTCTACTCACTGTTGGAGATTTGCTGCAAGTTTACCCAAATTTATCTGAGGCTACCCCAGGGAGTGCAAAACATGCCGATACAGAACAGTGGCTAGCCACCTCTTCATGCATCGATGCTGCACAAAATGGAGTTGTAGCCGCGTTTGCACCTACAAATCGCGTCGTATTTACTGATTGGTTTACCGGTACAAGAGCACGTATGATTTTAGGGCCTTCTGTAACAACTAATGAAATTGATAAAGCAGTGCACCAGATGATAATTGATGCTGGTGCTTATCCCTCACCCCTTGGTTATGGTGGATTTCCGAAAAGTGTATGCACATCAGTTAATGAGTGCATGTGCCATGGGATACCTGATTCACGGCAGTTACAGAATGGTGATATTATCAACATTGATGTGACAGTCTACCTGAATGGATATCATGGAGACACGTCAAAGACTTTTTTTTGTGGGGATGTCAGTGATGCAATGAAAAACCTTGTTAAGGTAACCGAAGAGTGCTTGGAGAAAGGAATAGCCGTTTGCAAAGATGGTACCCCTTTTAAGAAAATTGGAAAAAGAATCAGTGAGCATGCCGAAAAGTATGGCTACGGTGTAGTGGAGCGTTTTGTTGGGCATGGTGTTGGAACAGTGTTTCACTGTGAGCCATATATTTACCATCATCGCAATGACGAAGGAGGTTGCATGGTTGAAGGTCAAACATTTACAATTGAGCCTATTCTTTCAATGGGAAGCACTGATTGCATTACATGGCCAGATAACTGGACAACAGTTACAACTGATGGCAGTCCAGCCGCACAGTTTGAGCATACCATTCTGATAACAAGAACTGGAGCTGAAATTTTGACTACATGTTGA

Protein sequence

>Msa0848760

MALTASLGHSAFLKLSTSFYGDTSPSSSISTTFPGNQSFSRKQFVVFARKMSGLEEARRIKRERELQVVKKDRKGPPLRRGKVSPRLPVPDDILKPPYVGSDVLPEMGTEYQIHDSEGIAKMRAAGELAARVLNFAGTLVRQQVLSEGRNEKGFVALVAQHVTLLTVGDLLQVYPNLSEATPGSAKHADTEQWLATSSCIDAAQNGVVAAFAPTNRVVFTDWFTGTRARMILGPSVTTNEIDKAVHQMIIDAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQNGDIINIDVTVYLNGYHGDTSKTFFCGDVSDAMKNLVKVTEECLEKGIAVCKDGTPFKKIGKRISEHAEKYGYGVVERFVGHGVGTVFHCEPYIYHHRNDEGGCMVEGQTFTIEPILSMGSTDCITWPDNWTTVTTDGSPAAQFEHTILITRTGAEILTTC*