Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124660 | XP_003590698.1 | 89.899 | 396 | 33 | 2 | 1 | 393 | 1 | 392 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124660 | sp|A1A6M1|PTAC5_ARATH | 54.430 | 395 | 162 | 9 | 3 | 390 | 1 | 384 | 8.82e-134 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124660 | G7I2L5 | 89.899 | 396 | 33 | 2 | 1 | 393 | 1 | 392 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043940 | Msa0124660 | 0.803068 | 4.158468e-49 | -8.615850e-47 |
| Msa0076720 | Msa0124660 | 0.978181 | 2.728041e-145 | -8.615850e-47 |
| Msa0124660 | Msa0168640 | -0.805328 | 1.407343e-49 | -8.615850e-47 |
| Msa0124660 | Msa0432720 | 0.845050 | 5.171097e-59 | -8.615850e-47 |
| Msa0124660 | Msa0525270 | 0.827779 | 1.295451e-54 | -8.615850e-47 |
| Msa0124660 | Msa0525280 | 0.838801 | 2.317041e-57 | -8.615850e-47 |
| Msa0124660 | Msa0553220 | -0.801139 | 1.036496e-48 | -8.615850e-47 |
| Msa0124660 | Msa0583740 | 0.814322 | 1.634151e-51 | -8.615850e-47 |
| Msa0124660 | Msa0654990 | -0.800054 | 1.725585e-48 | -8.615850e-47 |
| Msa0124660 | Msa0704220 | 0.837547 | 4.873218e-57 | -8.615850e-47 |
| Msa0124660 | Msa0729550 | 0.806662 | 7.375929e-50 | -8.615850e-47 |
| Msa0124660 | Msa0769830 | 0.833793 | 4.349212e-56 | -8.615850e-47 |
| Msa0124660 | Msa0806720 | 0.800896 | 1.162427e-48 | -8.615850e-47 |
| Msa0124660 | Msa0806760 | 0.803059 | 4.175731e-49 | -8.615850e-47 |
| Msa0124660 | Msa0809300 | 0.826268 | 2.977899e-54 | -8.615850e-47 |
| Msa0124660 | Msa0848760 | 0.829323 | 5.490664e-55 | -8.615850e-47 |
| Msa0124660 | Msa0861040 | -0.805186 | 1.507325e-49 | -8.615850e-47 |
| Msa0124660 | Msa0882700 | 0.807085 | 6.003243e-50 | -8.615850e-47 |
| Msa0124660 | Msa1069960 | 0.805368 | 1.380733e-49 | -8.615850e-47 |
| Msa0124660 | Msa1075340 | 0.827179 | 1.804408e-54 | -8.615850e-47 |
| Msa0124660 | Msa1119860 | 0.819026 | 1.441719e-52 | -8.615850e-47 |
| Msa0124660 | Msa1162730 | 0.889131 | 3.186028e-73 | -8.615850e-47 |
| Msa0124660 | Msa1354090 | 0.843518 | 1.333999e-58 | -8.615850e-47 |
| Msa0124660 | Msa1434660 | 0.817208 | 3.714798e-52 | -8.615850e-47 |
| Msa0124660 | Msa1439120 | 0.802128 | 6.499258e-49 | -8.615850e-47 |
| Msa0124660 | Msa1455660 | 0.804206 | 2.413908e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124660 | MtrunA17_Chr1g0185881 | 89.899 | 396 | 33 | 2 | 1 | 393 | 1 | 392 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124660 | AT4G13670.1 | 54.430 | 395 | 162 | 9 | 3 | 390 | 1 | 384 | 8.97e-135 | 391 |
| Msa0124660 | AT4G13670.3 | 50.992 | 353 | 155 | 9 | 3 | 348 | 1 | 342 | 2.26e-101 | 305 |
| Msa0124660 | AT4G13670.2 | 53.731 | 268 | 114 | 6 | 3 | 265 | 1 | 263 | 1.55e-77 | 241 |
| Msa0124660 | AT4G13670.4 | 53.731 | 268 | 114 | 6 | 3 | 265 | 1 | 263 | 1.55e-77 | 241 |
Find 126 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACTTGAGGTTCAATATT+TGG | 0.133095 | 1_3:+52505214 | None:intergenic |
| TCTTCTTGAGAGGCTATATT+TGG | 0.177538 | 1_3:-52506800 | Msa0124660:CDS |
| ATAGGAAGCATTGCTAAAAT+TGG | 0.187653 | 1_3:-52507246 | Msa0124660:intron |
| GATGGGATGCTTCTGTTTCT+TGG | 0.211385 | 1_3:+52506021 | None:intergenic |
| GGAAATAGAGGTTCAGGTTT+TGG | 0.243219 | 1_3:-52504798 | Msa0124660:three_prime_UTR |
| TGCCCTAGGCCTTCACAATA+TGG | 0.248289 | 1_3:+52505066 | None:intergenic |
| TGTCAAACTTTCTTGAGATT+TGG | 0.251549 | 1_3:-52504643 | Msa0124660:three_prime_UTR |
| ATGAAATGCCTTCAATGTTC+TGG | 0.265689 | 1_3:-52505903 | Msa0124660:CDS |
| GAAAGTTTGACAAATTGATA+TGG | 0.267461 | 1_3:+52504654 | None:intergenic |
| GGTAAGGGAATTGAATTTAT+AGG | 0.268387 | 1_3:+52507845 | None:intergenic |
| AGAGGCTATATTTGGATATA+AGG | 0.293358 | 1_3:-52506792 | Msa0124660:CDS |
| CGTTAACTGATAAACATAAC+TGG | 0.300881 | 1_3:-52504820 | Msa0124660:three_prime_UTR |
| GGTGTTGAAGGATAAGAATT+TGG | 0.307976 | 1_3:-52507580 | Msa0124660:CDS |
| ACCTTCGTCGAAAGTCTTGA+TGG | 0.348199 | 1_3:+52505960 | None:intergenic |
| TTTGAGAAATGAGAGGGTTT+TGG | 0.351215 | 1_3:+52507881 | None:intergenic |
| CGACGAAGGTTAGAGTTGAT+AGG | 0.357851 | 1_3:-52505947 | Msa0124660:CDS |
| GCATTTGGCCACATTCATTT+CGG | 0.362122 | 1_3:+52504711 | None:intergenic |
| AGTATACTTATAATTGCATT+TGG | 0.362205 | 1_3:+52504696 | None:intergenic |
| TTTGAAAGTAGCCTCACTTT+TGG | 0.362937 | 1_3:-52504576 | Msa0124660:three_prime_UTR |
| GAGTTCTAGGAAGTTGAAAA+TGG | 0.370611 | 1_3:-52506107 | Msa0124660:intron |
| AGAGTTACAGTGACGGTTAT+GGG | 0.371248 | 1_3:+52507927 | None:intergenic |
| TAGAGTTACAGTGACGGTTA+TGG | 0.378603 | 1_3:+52507926 | None:intergenic |
| TTGAATTTGAAGTTTAAGTT+CGG | 0.384376 | 1_3:+52507686 | None:intergenic |
| TAACTGGGAAATAGAGGTTC+AGG | 0.388636 | 1_3:-52504804 | Msa0124660:three_prime_UTR |
| AGATGAAGTGGAAGAAGAAA+AGG | 0.404194 | 1_3:-52507505 | Msa0124660:CDS |
| AAAGTTTGACAAATTGATAT+GGG | 0.406667 | 1_3:+52504655 | None:intergenic |
| GAATGTTGCGGCGTTGCTAC+AGG | 0.410320 | 1_3:-52507601 | Msa0124660:CDS |
| GTTAGTGCTTGAGGAGGAAA+AGG | 0.421005 | 1_3:-52507529 | Msa0124660:CDS |
| GTGTTCTTCGCGATCGGGAA+TGG | 0.425539 | 1_3:+52507812 | None:intergenic |
| AGAAGAGGTTCAAAAGTTGC+AGG | 0.426132 | 1_3:-52507391 | Msa0124660:intron |
| TAGGAAGCATTGCTAAAATT+GGG | 0.430808 | 1_3:-52507245 | Msa0124660:CDS |
| TGAAATGCCTTCAATGTTCT+GGG | 0.435833 | 1_3:-52505902 | Msa0124660:CDS |
| GTTTCTTCATCGTTTCATAC+AGG | 0.437781 | 1_3:-52504992 | Msa0124660:intron |
| TATTGTTTAACAGTCTTCGT+TGG | 0.443547 | 1_3:-52506854 | Msa0124660:intron |
| CAGCGGTGTTCTTCGCGATC+GGG | 0.449847 | 1_3:+52507807 | None:intergenic |
| GCCCTAGGCCTTCACAATAT+GGG | 0.455756 | 1_3:+52505067 | None:intergenic |
| GACGAAGGTTAGAGTTGATA+GGG | 0.456347 | 1_3:-52505946 | Msa0124660:CDS |
| CCAGCGGTGTTCTTCGCGAT+CGG | 0.462132 | 1_3:+52507806 | None:intergenic |
| GAAGCCATCGTTGTTCTTCA+CGG | 0.463148 | 1_3:+52507781 | None:intergenic |
| TACCTTGCCCAGAACATTGA+AGG | 0.467337 | 1_3:+52505895 | None:intergenic |
| ATTGTTTAACAGTCTTCGTT+GGG | 0.467627 | 1_3:-52506853 | Msa0124660:intron |
| TCCCCAAGGAGGAAAACTCT+TGG | 0.467714 | 1_3:+52505999 | None:intergenic |
| TAAACATAACTGGGAAATAG+AGG | 0.473226 | 1_3:-52504810 | Msa0124660:three_prime_UTR |
| GACGTCATGATCCCATCCTC+AGG | 0.480208 | 1_3:+52506826 | None:intergenic |
| TCGTTGGGCATCCCTGAGGA+TGG | 0.484266 | 1_3:-52506838 | Msa0124660:CDS |
| CTGAGCGTGCTGTGAAGACT+TGG | 0.485165 | 1_3:-52507172 | Msa0124660:CDS |
| CAAGGTATCTTGTTGTGTAC+AGG | 0.491562 | 1_3:-52505879 | Msa0124660:intron |
| GAATCGATGGAATCGTGAAC+GGG | 0.492158 | 1_3:-52507730 | Msa0124660:CDS |
| GGCGTTGCTACAGGTGTTGA+AGG | 0.493616 | 1_3:-52507592 | Msa0124660:CDS |
| GGAGGAAAAGGAAGATGAAG+TGG | 0.494506 | 1_3:-52507517 | Msa0124660:CDS |
| GGAATCTGTTGAGGTTGTAA+AGG | 0.496533 | 1_3:-52507484 | Msa0124660:CDS |
| TGCCCATATTGTGAAGGCCT+AGG | 0.500318 | 1_3:-52505069 | Msa0124660:CDS |
| GTTTATGGAATGGGTGGGTG+AGG | 0.509439 | 1_3:-52505100 | Msa0124660:CDS |
| TCAGAGGAGGTTAGTGCTTG+AGG | 0.509466 | 1_3:-52507538 | Msa0124660:CDS |
| TTTGGTGGGGAAAGAGAGTG+TGG | 0.512214 | 1_3:+52507899 | None:intergenic |
| TGTTGAGAAACCTGCTGCTA+AGG | 0.513290 | 1_3:-52507451 | Msa0124660:CDS |
| AAGAATTTGGTTCTTGAGAG+TGG | 0.516277 | 1_3:-52507567 | Msa0124660:CDS |
| TCCTCCTTGGGGAAAATCGG+TGG | 0.518446 | 1_3:-52505989 | Msa0124660:CDS |
| TGAGGTTGTAAAGGAGATTG+TGG | 0.520541 | 1_3:-52507475 | Msa0124660:CDS |
| AATGGAGCAGTGAGCGGTAA+GGG | 0.522076 | 1_3:+52507830 | None:intergenic |
| TGTGATGCAGTTTATGGAAT+GGG | 0.528310 | 1_3:-52505109 | Msa0124660:intron |
| CAAGGAGGAAAACTCTTGGA+TGG | 0.534791 | 1_3:+52506003 | None:intergenic |
| ATTGCAGAATGTGATGGATC+TGG | 0.539845 | 1_3:-52505241 | Msa0124660:intron |
| ATGAGGTTTGAGAAATGAGA+GGG | 0.543349 | 1_3:+52507875 | None:intergenic |
| CGATGCGGTTTCGAATGTTG+CGG | 0.545301 | 1_3:-52507613 | Msa0124660:CDS |
| TTGAGAGTGGTTCTAGTCAG+AGG | 0.547189 | 1_3:-52507554 | Msa0124660:CDS |
| GAATGGAGCAGTGAGCGGTA+AGG | 0.547203 | 1_3:+52507829 | None:intergenic |
| CGTTGGGCATCCCTGAGGAT+GGG | 0.552075 | 1_3:-52506837 | Msa0124660:CDS |
| AAGGGAATTGAATTTATAGG+AGG | 0.553750 | 1_3:+52507848 | None:intergenic |
| GCCCATATTGTGAAGGCCTA+GGG | 0.554880 | 1_3:-52505068 | Msa0124660:CDS |
| TTCTTCTACGTCTTCCGATG+CGG | 0.555273 | 1_3:-52507628 | Msa0124660:CDS |
| TGCCTTCAATGTTCTGGGCA+AGG | 0.563469 | 1_3:-52505897 | Msa0124660:CDS |
| TACAGTGACGGTTATGGGAA+CGG | 0.566716 | 1_3:+52507932 | None:intergenic |
| ATATTTGGATATAAGGACTA+CGG | 0.568308 | 1_3:-52506785 | Msa0124660:CDS |
| GATGGCTTCGCGAGGAGCAA+CGG | 0.569267 | 1_3:-52507767 | Msa0124660:CDS |
| ATAACTTGTGATTTGTGTCG+AGG | 0.569352 | 1_3:-52505042 | Msa0124660:CDS |
| AGTTGATAGGGGCAAGAACA+AGG | 0.571690 | 1_3:-52505934 | Msa0124660:CDS |
| AACCTCTGAAATTTCTGTCA+CGG | 0.573766 | 1_3:+52506070 | None:intergenic |
| TCTTTGATTGCAGAATGTGA+TGG | 0.581458 | 1_3:-52505247 | Msa0124660:intron |
| CCGATCGCGAAGAACACCGC+TGG | 0.583146 | 1_3:-52507806 | Msa0124660:CDS |
| CCTCCTTGGGGAAAATCGGT+GGG | 0.583402 | 1_3:-52505988 | Msa0124660:CDS |
| GGCTTCGCGAGGAGCAACGG+TGG | 0.584221 | 1_3:-52507764 | Msa0124660:CDS |
| CGCAACATTCGAAACCGCAT+CGG | 0.587059 | 1_3:+52507614 | None:intergenic |
| AGAATCGATGGAATCGTGAA+CGG | 0.587227 | 1_3:-52507731 | Msa0124660:CDS |
| TAACTTGTGATTTGTGTCGA+GGG | 0.588543 | 1_3:-52505041 | Msa0124660:CDS |
| TTTGGCCACATTCATTTCGG+AGG | 0.590724 | 1_3:+52504714 | None:intergenic |
| AAGGAGGAAAACTCTTGGAT+GGG | 0.591075 | 1_3:+52506004 | None:intergenic |
| AAGATATAATTCGATGCTCG+AGG | 0.592000 | 1_3:+52507661 | None:intergenic |
| TCGGAAGACGTAGAAGAAGA+AGG | 0.592316 | 1_3:+52507633 | None:intergenic |
| GGATTCGCGAGGAGAATCGA+TGG | 0.592474 | 1_3:-52507743 | Msa0124660:CDS |
| TTACTCGGGTGAGGAGGACA+TGG | 0.594106 | 1_3:-52507219 | Msa0124660:CDS |
| TCGAGGGAAAACGATGGTGT+AGG | 0.597452 | 1_3:-52505025 | Msa0124660:exon |
| AACTACCGGAAAATGAAAGC+AGG | 0.603300 | 1_3:-52504757 | Msa0124660:three_prime_UTR |
| GATGCAGTTTATGGAATGGG+TGG | 0.603655 | 1_3:-52505106 | Msa0124660:intron |
| AATGAGGTTTGAGAAATGAG+AGG | 0.606074 | 1_3:+52507874 | None:intergenic |
| AACAGGTTCTGAAGGAGAAG+AGG | 0.607825 | 1_3:-52507406 | Msa0124660:CDS |
| GAATTCTCTAGCTTCTCAAG+TGG | 0.612169 | 1_3:-52507197 | Msa0124660:CDS |
| AGAAGAAAAGGAATCTGTTG+AGG | 0.612843 | 1_3:-52507493 | Msa0124660:CDS |
| CTGTGATGCAGTTTATGGAA+TGG | 0.616155 | 1_3:-52505110 | Msa0124660:intron |
| TTGGGCATTTGCCAAAAGTG+AGG | 0.619363 | 1_3:+52504565 | None:intergenic |
| AATTCTCTAGCTTCTCAAGT+GGG | 0.622250 | 1_3:-52507196 | Msa0124660:CDS |
| TACAAGCGAAGTGAAACTAC+CGG | 0.624885 | 1_3:-52504771 | Msa0124660:three_prime_UTR |
| ACAAAATGCCCATATTGTGA+AGG | 0.630638 | 1_3:-52505075 | Msa0124660:CDS |
| ATGCAGTTTATGGAATGGGT+GGG | 0.631580 | 1_3:-52505105 | Msa0124660:intron |
| TTCCGTGACAGAAATTTCAG+AGG | 0.631894 | 1_3:-52506072 | Msa0124660:CDS |
| AGAGTGGTTCTAGTCAGAGG+AGG | 0.634878 | 1_3:-52507551 | Msa0124660:CDS |
| GTGACGGTTATGGGAACGGT+AGG | 0.637180 | 1_3:+52507936 | None:intergenic |
| CTGCTGCTAAGGTTGAAAAG+AGG | 0.637914 | 1_3:-52507440 | Msa0124660:CDS |
| GTTGTTCTTCACGGAGCCAG+CGG | 0.640610 | 1_3:+52507790 | None:intergenic |
| AATCACAAGTTATATGCCCT+AGG | 0.642779 | 1_3:+52505052 | None:intergenic |
| ATCGGGAATGGAGCAGTGAG+CGG | 0.642837 | 1_3:+52507824 | None:intergenic |
| AGATATAATTCGATGCTCGA+GGG | 0.643521 | 1_3:+52507662 | None:intergenic |
| ACCATCAAGACTTTCGACGA+AGG | 0.643727 | 1_3:-52505961 | Msa0124660:CDS |
| GGAGCAACGGTGGATTCGCG+AGG | 0.645147 | 1_3:-52507754 | Msa0124660:CDS |
| GTTAACTGATAAACATAACT+GGG | 0.651089 | 1_3:-52504819 | Msa0124660:three_prime_UTR |
| TGACGTCTAATCTTCTTGAG+AGG | 0.653400 | 1_3:-52506810 | Msa0124660:CDS |
| ACGTCATGATCCCATCCTCA+GGG | 0.653901 | 1_3:+52506827 | None:intergenic |
| ACGAAGGTTAGAGTTGATAG+GGG | 0.654349 | 1_3:-52505945 | Msa0124660:CDS |
| GAGGAGGTTAGTGCTTGAGG+AGG | 0.654807 | 1_3:-52507535 | Msa0124660:CDS |
| ACTTTCCTCCGAAATGAATG+TGG | 0.654859 | 1_3:-52504719 | Msa0124660:three_prime_UTR |
| GATAGGGGCAAGAACAAGGA+CGG | 0.659961 | 1_3:-52505930 | Msa0124660:CDS |
| AGAACAACGATGGCTTCGCG+AGG | 0.677962 | 1_3:-52507775 | Msa0124660:CDS |
| GGCTCCGTGAAGAACAACGA+TGG | 0.678007 | 1_3:-52507785 | Msa0124660:CDS |
| GGAGTTTAGAGTTACAGTGA+CGG | 0.682062 | 1_3:+52507920 | None:intergenic |
| GTCTTCGTTGGGCATCCCTG+AGG | 0.685757 | 1_3:-52506842 | Msa0124660:CDS |
| TTTGTGTCGAGGGAAAACGA+TGG | 0.877433 | 1_3:-52505031 | Msa0124660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCATACATAATATATTT+AGG | + | chr1_3:52507215-52507234 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTCATATGTTG+AGG | + | chr1_3:52506205-52506224 | None:intergenic | 15.0% |
| !!! | TTGAATTTGAAGTTTAAGTT+CGG | + | chr1_3:52504848-52504867 | None:intergenic | 20.0% |
| !!! | TAAAACATTAGCAGATTTTT+TGG | + | chr1_3:52505793-52505812 | None:intergenic | 20.0% |
| !! | TTATATAACAAACATACCTT+CGG | + | chr1_3:52505816-52505835 | None:intergenic | 20.0% |
| !! | GATAAAGAATCAAATACAAA+TGG | + | chr1_3:52506399-52506418 | None:intergenic | 20.0% |
| !! | ATTATGTATGATATCAACTT+TGG | - | chr1_3:52507221-52507240 | Msa0124660:CDS | 20.0% |
| !! | AGTATACTTATAATTGCATT+TGG | + | chr1_3:52507838-52507857 | None:intergenic | 20.0% |
| !! | AAAGTTTGACAAATTGATAT+GGG | + | chr1_3:52507879-52507898 | None:intergenic | 20.0% |
| ! | AATTTATAGGAGGAAAAATG+AGG | + | chr1_3:52504676-52504695 | None:intergenic | 25.0% |
| ! | GAAGAGAATAATAACTGTAT+TGG | - | chr1_3:52505422-52505441 | Msa0124660:intron | 25.0% |
| !! | TTTAACTGTCATGATTTTGA+TGG | - | chr1_3:52505646-52505665 | Msa0124660:intron | 25.0% |
| !!! | TTAACTGTCATGATTTTGAT+GGG | - | chr1_3:52505647-52505666 | Msa0124660:intron | 25.0% |
| ! | ATATTTGGATATAAGGACTA+CGG | - | chr1_3:52505746-52505765 | Msa0124660:intron | 25.0% |
| ! | TAAGAGTAACCACAAAAATA+TGG | + | chr1_3:52505876-52505895 | None:intergenic | 25.0% |
| ! | CTTTACATTGAATACATGTT+TGG | - | chr1_3:52505952-52505971 | Msa0124660:CDS | 25.0% |
| ! | TCATTATTTGACAGTTATCA+AGG | - | chr1_3:52506283-52506302 | Msa0124660:intron | 25.0% |
| !! | TCCTAAAAGTTTAAGCTTTT+AGG | - | chr1_3:52506314-52506333 | Msa0124660:intron | 25.0% |
| !! | ACCTAAAAGCTTAAACTTTT+AGG | + | chr1_3:52506318-52506337 | None:intergenic | 25.0% |
| ! | TCAACTAAAAGTGAAAACAA+CGG | + | chr1_3:52506691-52506710 | None:intergenic | 25.0% |
| ! | CATAAATAATGACCATTACA+TGG | - | chr1_3:52507159-52507178 | Msa0124660:intron | 25.0% |
| ! | AAATATTGAACCTCAAGTAA+GGG | - | chr1_3:52507319-52507338 | Msa0124660:intron | 25.0% |
| ! | GTTAACTGATAAACATAACT+GGG | - | chr1_3:52507712-52507731 | Msa0124660:CDS | 25.0% |
| ! | AATTGATATGGGAAAAAGAA+TGG | + | chr1_3:52507868-52507887 | None:intergenic | 25.0% |
| ! | GAAAGTTTGACAAATTGATA+TGG | + | chr1_3:52507880-52507899 | None:intergenic | 25.0% |
| AAGGGAATTGAATTTATAGG+AGG | + | chr1_3:52504686-52504705 | None:intergenic | 30.0% | |
| GGTAAGGGAATTGAATTTAT+AGG | + | chr1_3:52504689-52504708 | None:intergenic | 30.0% | |
| GTGATGAATTGTGTTACAAT+AGG | - | chr1_3:52505267-52505286 | Msa0124660:intron | 30.0% | |
| !! | ATAGGAAGCATTGCTAAAAT+TGG | - | chr1_3:52505285-52505304 | Msa0124660:intron | 30.0% |
| !! | TAGGAAGCATTGCTAAAATT+GGG | - | chr1_3:52505286-52505305 | Msa0124660:intron | 30.0% |
| ! | GCTAAAATTGGGATTTTACT+CGG | - | chr1_3:52505297-52505316 | Msa0124660:intron | 30.0% |
| ! | CTAAAATTGGGATTTTACTC+GGG | - | chr1_3:52505298-52505317 | Msa0124660:intron | 30.0% |
| !! | TATTTTTGTTACTGTGCGTT+TGG | - | chr1_3:52505448-52505467 | Msa0124660:intron | 30.0% |
| ATTAGAGCTTCACAAAATGA+CGG | + | chr1_3:52505507-52505526 | None:intergenic | 30.0% | |
| ! | TGTAGCTTTTCTCAAAATCA+CGG | - | chr1_3:52505528-52505547 | Msa0124660:intron | 30.0% |
| !! | ATTTGGATTGATGATGACAT+TGG | + | chr1_3:52505572-52505591 | None:intergenic | 30.0% |
| !!! | CTACTATGCTATGCTATTTT+TGG | - | chr1_3:52505619-52505638 | Msa0124660:intron | 30.0% |
| TATTGTTTAACAGTCTTCGT+TGG | - | chr1_3:52505677-52505696 | Msa0124660:intron | 30.0% | |
| ATTGTTTAACAGTCTTCGTT+GGG | - | chr1_3:52505678-52505697 | Msa0124660:intron | 30.0% | |
| AGAGGCTATATTTGGATATA+AGG | - | chr1_3:52505739-52505758 | Msa0124660:intron | 30.0% | |
| !! | AACATGCAACCATATTTTTG+TGG | - | chr1_3:52505864-52505883 | Msa0124660:intron | 30.0% |
| TGTTATTAGTATCTACACGT+TGG | - | chr1_3:52506055-52506074 | Msa0124660:CDS | 30.0% | |
| TTCATATCTTGTCTCTTCAT+TGG | + | chr1_3:52506376-52506395 | None:intergenic | 30.0% | |
| TCTTTATCAATCTGAGTTCT+AGG | - | chr1_3:52506411-52506430 | Msa0124660:intron | 30.0% | |
| AACTAAAAGTGAAAACAACG+GGG | + | chr1_3:52506689-52506708 | None:intergenic | 30.0% | |
| CAACTAAAAGTGAAAACAAC+GGG | + | chr1_3:52506690-52506709 | None:intergenic | 30.0% | |
| ! | AAGAATTGATTTCCTTACTG+GGG | + | chr1_3:52506723-52506742 | None:intergenic | 30.0% |
| ! | CAAGAATTGATTTCCTTACT+GGG | + | chr1_3:52506724-52506743 | None:intergenic | 30.0% |
| ! | TCAAGAATTGATTTCCTTAC+TGG | + | chr1_3:52506725-52506744 | None:intergenic | 30.0% |
| AACAAAACAACCTAGAGAAA+AGG | + | chr1_3:52506776-52506795 | None:intergenic | 30.0% | |
| TCAAATAACTCGGATGAATT+GGG | + | chr1_3:52506890-52506909 | None:intergenic | 30.0% | |
| TTCAAATAACTCGGATGAAT+TGG | + | chr1_3:52506891-52506910 | None:intergenic | 30.0% | |
| GAAAATCAACTGTGTGATAA+TGG | - | chr1_3:52506991-52507010 | Msa0124660:intron | 30.0% | |
| AGTTCAGTTTGATGTGATAA+TGG | - | chr1_3:52507018-52507037 | Msa0124660:intron | 30.0% | |
| TAATGGCTATTGTGTGAATT+TGG | - | chr1_3:52507035-52507054 | Msa0124660:intron | 30.0% | |
| AATGGCTATTGTGTGAATTT+GGG | - | chr1_3:52507036-52507055 | Msa0124660:intron | 30.0% | |
| ATAGTAGTATTCATAACAGC+AGG | - | chr1_3:52507072-52507091 | Msa0124660:intron | 30.0% | |
| TTTATGAAGACCTAAATGTG+AGG | + | chr1_3:52507145-52507164 | None:intergenic | 30.0% | |
| ACATTCTGCAATCAAAGAAA+CGG | + | chr1_3:52507282-52507301 | None:intergenic | 30.0% | |
| CTTACTTGAGGTTCAATATT+TGG | + | chr1_3:52507320-52507339 | None:intergenic | 30.0% | |
| CAAATATTGAACCTCAAGTA+AGG | - | chr1_3:52507318-52507337 | Msa0124660:intron | 30.0% | |
| CGTTAACTGATAAACATAAC+TGG | - | chr1_3:52507711-52507730 | Msa0124660:CDS | 30.0% | |
| TAAACATAACTGGGAAATAG+AGG | - | chr1_3:52507721-52507740 | Msa0124660:CDS | 30.0% | |
| TGTCAAACTTTCTTGAGATT+TGG | - | chr1_3:52507888-52507907 | Msa0124660:CDS | 30.0% | |
| ! | TTTGAGAAATGAGAGGGTTT+TGG | + | chr1_3:52504653-52504672 | None:intergenic | 35.0% |
| ATGAGGTTTGAGAAATGAGA+GGG | + | chr1_3:52504659-52504678 | None:intergenic | 35.0% | |
| AATGAGGTTTGAGAAATGAG+AGG | + | chr1_3:52504660-52504679 | None:intergenic | 35.0% | |
| AGATATAATTCGATGCTCGA+GGG | + | chr1_3:52504872-52504891 | None:intergenic | 35.0% | |
| AAGATATAATTCGATGCTCG+AGG | + | chr1_3:52504873-52504892 | None:intergenic | 35.0% | |
| ! | GGTGTTGAAGGATAAGAATT+TGG | - | chr1_3:52504951-52504970 | Msa0124660:intron | 35.0% |
| !! | AAGAATTTGGTTCTTGAGAG+TGG | - | chr1_3:52504964-52504983 | Msa0124660:intron | 35.0% |
| AGATGAAGTGGAAGAAGAAA+AGG | - | chr1_3:52505026-52505045 | Msa0124660:CDS | 35.0% | |
| AGAAGAAAAGGAATCTGTTG+AGG | - | chr1_3:52505038-52505057 | Msa0124660:CDS | 35.0% | |
| ! | AATTCTCTAGCTTCTCAAGT+GGG | - | chr1_3:52505335-52505354 | Msa0124660:intron | 35.0% |
| TGATTTCAGCAAATTCATGG+TGG | - | chr1_3:52505479-52505498 | Msa0124660:intron | 35.0% | |
| CATCAATCCAAATTCCAACT+TGG | - | chr1_3:52505579-52505598 | Msa0124660:intron | 35.0% | |
| ! | AATAGCACCAAGTTGGAATT+TGG | + | chr1_3:52505589-52505608 | None:intergenic | 35.0% |
| ACACTATAATAGCACCAAGT+TGG | + | chr1_3:52505596-52505615 | None:intergenic | 35.0% | |
| TCTTCTTGAGAGGCTATATT+TGG | - | chr1_3:52505731-52505750 | Msa0124660:intron | 35.0% | |
| ! | ATCTGCTAATGTTTTACCGA+AGG | - | chr1_3:52505797-52505816 | Msa0124660:intron | 35.0% |
| !! | GTACTTTTTGCTCTTCAGTA+CGG | - | chr1_3:52505839-52505858 | Msa0124660:intron | 35.0% |
| TCTTGATGGAAATCTGAACA+AGG | - | chr1_3:52506159-52506178 | Msa0124660:intron | 35.0% | |
| !! | GCTTAAACTTTTAGGAGAGT+GGG | + | chr1_3:52506310-52506329 | None:intergenic | 35.0% |
| !! | AGCTTAAACTTTTAGGAGAG+TGG | + | chr1_3:52506311-52506330 | None:intergenic | 35.0% |
| !! | GAGTTCTAGGAAGTTGAAAA+TGG | - | chr1_3:52506424-52506443 | Msa0124660:intron | 35.0% |
| !! | AACCTCTGAAATTTCTGTCA+CGG | + | chr1_3:52506464-52506483 | None:intergenic | 35.0% |
| ATGAAATGCCTTCAATGTTC+TGG | - | chr1_3:52506628-52506647 | Msa0124660:intron | 35.0% | |
| TGAAATGCCTTCAATGTTCT+GGG | - | chr1_3:52506629-52506648 | Msa0124660:intron | 35.0% | |
| TGAATATATAAGCCCCAGTA+AGG | - | chr1_3:52506708-52506727 | Msa0124660:intron | 35.0% | |
| !! | TGAGAGTATACCTTTTCTCT+AGG | - | chr1_3:52506763-52506782 | Msa0124660:CDS | 35.0% |
| ACAATGTCATCTTGTTGACA+AGG | - | chr1_3:52506853-52506872 | Msa0124660:intron | 35.0% | |
| ! | CTCGAGGTATTCAAATAACT+CGG | + | chr1_3:52506900-52506919 | None:intergenic | 35.0% |
| !!! | TTCACATGGTTTTTTTCTCG+AGG | + | chr1_3:52506916-52506935 | None:intergenic | 35.0% |
| GTTAGTCAATCCACTCAAAT+TGG | - | chr1_3:52506937-52506956 | Msa0124660:intron | 35.0% | |
| TCTAGTTAAGCCAATTTGAG+TGG | + | chr1_3:52506950-52506969 | None:intergenic | 35.0% | |
| GCTCAGCATCTTTATTATAC+TGG | - | chr1_3:52507186-52507205 | Msa0124660:CDS | 35.0% | |
| GACTTGAGACTTGAGATATA+TGG | + | chr1_3:52507254-52507273 | None:intergenic | 35.0% | |
| TCTTTGATTGCAGAATGTGA+TGG | - | chr1_3:52507284-52507303 | Msa0124660:intron | 35.0% | |
| TGTGATGCAGTTTATGGAAT+GGG | - | chr1_3:52507422-52507441 | Msa0124660:CDS | 35.0% | |
| ACAAAATGCCCATATTGTGA+AGG | - | chr1_3:52507456-52507475 | Msa0124660:CDS | 35.0% | |
| AATCACAAGTTATATGCCCT+AGG | + | chr1_3:52507482-52507501 | None:intergenic | 35.0% | |
| ! | ATAACTTGTGATTTGTGTCG+AGG | - | chr1_3:52507489-52507508 | Msa0124660:CDS | 35.0% |
| ! | TAACTTGTGATTTGTGTCGA+GGG | - | chr1_3:52507490-52507509 | Msa0124660:CDS | 35.0% |
| GTTTCTTCATCGTTTCATAC+AGG | - | chr1_3:52507539-52507558 | Msa0124660:CDS | 35.0% | |
| ! | TTCAACCTGCTTTCATTTTC+CGG | + | chr1_3:52507782-52507801 | None:intergenic | 35.0% |
| AGAGTTACAGTGACGGTTAT+GGG | + | chr1_3:52504607-52504626 | None:intergenic | 40.0% | |
| TAGAGTTACAGTGACGGTTA+TGG | + | chr1_3:52504608-52504627 | None:intergenic | 40.0% | |
| ! | GGAGTTTAGAGTTACAGTGA+CGG | + | chr1_3:52504614-52504633 | None:intergenic | 40.0% |
| !! | AGAAATGAGAGGGTTTTGGT+GGG | + | chr1_3:52504649-52504668 | None:intergenic | 40.0% |
| AGAATCGATGGAATCGTGAA+CGG | - | chr1_3:52504800-52504819 | Msa0124660:three_prime_UTR | 40.0% | |
| GGAATCTGTTGAGGTTGTAA+AGG | - | chr1_3:52505047-52505066 | Msa0124660:CDS | 40.0% | |
| TGAGGTTGTAAAGGAGATTG+TGG | - | chr1_3:52505056-52505075 | Msa0124660:CDS | 40.0% | |
| AGAAGAGGTTCAAAAGTTGC+AGG | - | chr1_3:52505140-52505159 | Msa0124660:intron | 40.0% | |
| ! | GAATTCTCTAGCTTCTCAAG+TGG | - | chr1_3:52505334-52505353 | Msa0124660:intron | 40.0% |
| TTGTTACTGTGCGTTTGGAT+TGG | - | chr1_3:52505453-52505472 | Msa0124660:intron | 40.0% | |
| CGGTGATTTCAGCAAATTCA+TGG | - | chr1_3:52505476-52505495 | Msa0124660:intron | 40.0% | |
| TGATGACATTGGCAGAATCA+CGG | + | chr1_3:52505561-52505580 | None:intergenic | 40.0% | |
| TGACGTCTAATCTTCTTGAG+AGG | - | chr1_3:52505721-52505740 | Msa0124660:intron | 40.0% | |
| ! | GTGTTGTTGCTACATAGCAT+GGG | + | chr1_3:52505933-52505952 | None:intergenic | 40.0% |
| ! | AGTGTTGTTGCTACATAGCA+TGG | + | chr1_3:52505934-52505953 | None:intergenic | 40.0% |
| TCTACACGTTGGTATTGTGT+CGG | - | chr1_3:52506066-52506085 | Msa0124660:CDS | 40.0% | |
| ATGAAACACTGACAGAGACA+TGG | + | chr1_3:52506096-52506115 | None:intergenic | 40.0% | |
| TGATAGATGCCATGTCTCTA+AGG | - | chr1_3:52506119-52506138 | Msa0124660:intron | 40.0% | |
| GATAGATGCCATGTCTCTAA+GGG | - | chr1_3:52506120-52506139 | Msa0124660:intron | 40.0% | |
| !! | CTAAGGGATTGGTCAATGAT+TGG | - | chr1_3:52506136-52506155 | Msa0124660:intron | 40.0% |
| !! | TGGTCAATGATTGGTCTTGA+TGG | - | chr1_3:52506145-52506164 | Msa0124660:intron | 40.0% |
| CTACAAAATCTACTACTCCC+AGG | + | chr1_3:52506346-52506365 | None:intergenic | 40.0% | |
| TTCCGTGACAGAAATTTCAG+AGG | - | chr1_3:52506459-52506478 | Msa0124660:intron | 40.0% | |
| AAGGAGGAAAACTCTTGGAT+GGG | + | chr1_3:52506530-52506549 | None:intergenic | 40.0% | |
| ! | ATCCAAGAGTTTTCCTCCTT+GGG | - | chr1_3:52506530-52506549 | Msa0124660:intron | 40.0% |
| ! | TTTTCCTCCTTGGGGAAAAT+CGG | - | chr1_3:52506539-52506558 | Msa0124660:intron | 40.0% |
| !! | GACGAAGGTTAGAGTTGATA+GGG | - | chr1_3:52506585-52506604 | Msa0124660:intron | 40.0% |
| !! | ACGAAGGTTAGAGTTGATAG+GGG | - | chr1_3:52506586-52506605 | Msa0124660:intron | 40.0% |
| ! | CAAGGTATCTTGTTGTGTAC+AGG | - | chr1_3:52506652-52506671 | Msa0124660:intron | 40.0% |
| GTCAACAAGATGACATTGTG+AGG | + | chr1_3:52506852-52506871 | None:intergenic | 40.0% | |
| AACTCGGATGAATTGGGATT+AGG | + | chr1_3:52506884-52506903 | None:intergenic | 40.0% | |
| TGGATTGACTAACGTTCACA+TGG | + | chr1_3:52506930-52506949 | None:intergenic | 40.0% | |
| AGTATTCATAACAGCAGGCA+TGG | - | chr1_3:52507077-52507096 | Msa0124660:intron | 40.0% | |
| GGTGGTTTATCCTCACATTT+AGG | - | chr1_3:52507132-52507151 | Msa0124660:intron | 40.0% | |
| !! | ATTGCAGAATGTGATGGATC+TGG | - | chr1_3:52507290-52507309 | Msa0124660:intron | 40.0% |
| GCACAATTATCCCTTACTTG+AGG | + | chr1_3:52507332-52507351 | None:intergenic | 40.0% | |
| GAGATCTGTGATGCAGTTTA+TGG | - | chr1_3:52507416-52507435 | Msa0124660:CDS | 40.0% | |
| CTGTGATGCAGTTTATGGAA+TGG | - | chr1_3:52507421-52507440 | Msa0124660:CDS | 40.0% | |
| ATGCAGTTTATGGAATGGGT+GGG | - | chr1_3:52507426-52507445 | Msa0124660:CDS | 40.0% | |
| TAACTGGGAAATAGAGGTTC+AGG | - | chr1_3:52507727-52507746 | Msa0124660:CDS | 40.0% | |
| !! | GGAAATAGAGGTTCAGGTTT+TGG | - | chr1_3:52507733-52507752 | Msa0124660:CDS | 40.0% |
| TACAAGCGAAGTGAAACTAC+CGG | - | chr1_3:52507760-52507779 | Msa0124660:CDS | 40.0% | |
| AACTACCGGAAAATGAAAGC+AGG | - | chr1_3:52507774-52507793 | Msa0124660:CDS | 40.0% | |
| ACTTTCCTCCGAAATGAATG+TGG | - | chr1_3:52507812-52507831 | Msa0124660:CDS | 40.0% | |
| GCATTTGGCCACATTCATTT+CGG | + | chr1_3:52507823-52507842 | None:intergenic | 40.0% | |
| TACAGTGACGGTTATGGGAA+CGG | + | chr1_3:52504602-52504621 | None:intergenic | 45.0% | |
| !! | GAAATGAGAGGGTTTTGGTG+GGG | + | chr1_3:52504648-52504667 | None:intergenic | 45.0% |
| !! | GAGAAATGAGAGGGTTTTGG+TGG | + | chr1_3:52504650-52504669 | None:intergenic | 45.0% |
| GAAGCCATCGTTGTTCTTCA+CGG | + | chr1_3:52504753-52504772 | None:intergenic | 45.0% | |
| GAATCGATGGAATCGTGAAC+GGG | - | chr1_3:52504801-52504820 | Msa0124660:three_prime_UTR | 45.0% | |
| TCGGAAGACGTAGAAGAAGA+AGG | + | chr1_3:52504901-52504920 | None:intergenic | 45.0% | |
| TTCTTCTACGTCTTCCGATG+CGG | - | chr1_3:52504903-52504922 | Msa0124660:intron | 45.0% | |
| !! | TTGAGAGTGGTTCTAGTCAG+AGG | - | chr1_3:52504977-52504996 | Msa0124660:intron | 45.0% |
| GTTAGTGCTTGAGGAGGAAA+AGG | - | chr1_3:52505002-52505021 | Msa0124660:three_prime_UTR | 45.0% | |
| GGAGGAAAAGGAAGATGAAG+TGG | - | chr1_3:52505014-52505033 | Msa0124660:exon | 45.0% | |
| TGTTGAGAAACCTGCTGCTA+AGG | - | chr1_3:52505080-52505099 | Msa0124660:CDS | 45.0% | |
| ! | CTCTTTTCAACCTTAGCAGC+AGG | + | chr1_3:52505093-52505112 | None:intergenic | 45.0% |
| CTGCTGCTAAGGTTGAAAAG+AGG | - | chr1_3:52505091-52505110 | Msa0124660:CDS | 45.0% | |
| ! | AAGAGGACTGTTTTGCGAAC+AGG | - | chr1_3:52505108-52505127 | Msa0124660:intron | 45.0% |
| !! | GTTTTGCGAACAGGTTCTGA+AGG | - | chr1_3:52505117-52505136 | Msa0124660:intron | 45.0% |
| !! | AACAGGTTCTGAAGGAGAAG+AGG | - | chr1_3:52505125-52505144 | Msa0124660:intron | 45.0% |
| ! | ATTGGGATTTTACTCGGGTG+AGG | - | chr1_3:52505303-52505322 | Msa0124660:intron | 45.0% |
| ! | TTACTGTGCGTTTGGATTGG+CGG | - | chr1_3:52505456-52505475 | Msa0124660:intron | 45.0% |
| TTCAATGTGACCACATGTGC+TGG | + | chr1_3:52506015-52506034 | None:intergenic | 45.0% | |
| CTACACGTTGGTATTGTGTC+GGG | - | chr1_3:52506067-52506086 | Msa0124660:CDS | 45.0% | |
| ! | ATGCCATGTCTCTAAGGGAT+TGG | - | chr1_3:52506125-52506144 | Msa0124660:intron | 45.0% |
| TGACCAATCCCTTAGAGACA+TGG | + | chr1_3:52506131-52506150 | None:intergenic | 45.0% | |
| !! | TAAGCTTTTAGGTGCAAGCC+TGG | - | chr1_3:52506325-52506344 | Msa0124660:intron | 45.0% |
| !! | AAGCTTTTAGGTGCAAGCCT+GGG | - | chr1_3:52506326-52506345 | Msa0124660:intron | 45.0% |
| AGAGGTTCAGCAAAAAGTCG+TGG | - | chr1_3:52506477-52506496 | Msa0124660:intron | 45.0% | |
| GAGGTTCAGCAAAAAGTCGT+GGG | - | chr1_3:52506478-52506497 | Msa0124660:intron | 45.0% | |
| ! | GATGGGATGCTTCTGTTTCT+TGG | + | chr1_3:52506513-52506532 | None:intergenic | 45.0% |
| CAAGGAGGAAAACTCTTGGA+TGG | + | chr1_3:52506531-52506550 | None:intergenic | 45.0% | |
| ! | CATCCAAGAGTTTTCCTCCT+TGG | - | chr1_3:52506529-52506548 | Msa0124660:intron | 45.0% |
| ! | TCCAAGAGTTTTCCTCCTTG+GGG | - | chr1_3:52506531-52506550 | Msa0124660:intron | 45.0% |
| ACCATCAAGACTTTCGACGA+AGG | - | chr1_3:52506570-52506589 | Msa0124660:intron | 45.0% | |
| ACCTTCGTCGAAAGTCTTGA+TGG | + | chr1_3:52506574-52506593 | None:intergenic | 45.0% | |
| ! | CGACGAAGGTTAGAGTTGAT+AGG | - | chr1_3:52506584-52506603 | Msa0124660:intron | 45.0% |
| !! | AGTTGATAGGGGCAAGAACA+AGG | - | chr1_3:52506597-52506616 | Msa0124660:intron | 45.0% |
| TACCTTGCCCAGAACATTGA+AGG | + | chr1_3:52506639-52506658 | None:intergenic | 45.0% | |
| !! | GGTTGTTTTGTTCCTCCAAC+TGG | - | chr1_3:52506784-52506803 | Msa0124660:CDS | 45.0% |
| AGAGTATGAGAAGCTCCAGT+TGG | + | chr1_3:52506802-52506821 | None:intergenic | 45.0% | |
| GGATGAATTGGGATTAGGAG+AGG | + | chr1_3:52506879-52506898 | None:intergenic | 45.0% | |
| GCAGCTTCATTGGAGTCATT+GGG | + | chr1_3:52507103-52507122 | None:intergenic | 45.0% | |
| TGCTGAGCTCTTCCATGTAA+TGG | + | chr1_3:52507174-52507193 | None:intergenic | 45.0% | |
| GATGCAGTTTATGGAATGGG+TGG | - | chr1_3:52507425-52507444 | Msa0124660:CDS | 45.0% | |
| TTTGTGTCGAGGGAAAACGA+TGG | - | chr1_3:52507500-52507519 | Msa0124660:CDS | 45.0% | |
| TTTGGCCACATTCATTTCGG+AGG | + | chr1_3:52507820-52507839 | None:intergenic | 45.0% | |
| TTTGGTGGGGAAAGAGAGTG+TGG | + | chr1_3:52504635-52504654 | None:intergenic | 50.0% | |
| AATGGAGCAGTGAGCGGTAA+GGG | + | chr1_3:52504704-52504723 | None:intergenic | 50.0% | |
| CGCAACATTCGAAACCGCAT+CGG | + | chr1_3:52504920-52504939 | None:intergenic | 50.0% | |
| CGATGCGGTTTCGAATGTTG+CGG | - | chr1_3:52504918-52504937 | Msa0124660:intron | 50.0% | |
| !! | AGAGTGGTTCTAGTCAGAGG+AGG | - | chr1_3:52504980-52504999 | Msa0124660:intron | 50.0% |
| TCAGAGGAGGTTAGTGCTTG+AGG | - | chr1_3:52504993-52505012 | Msa0124660:three_prime_UTR | 50.0% | |
| ACGTCATGATCCCATCCTCA+GGG | + | chr1_3:52505707-52505726 | None:intergenic | 50.0% | |
| !! | TGCTGGTGTTGTGTAGGTGA+TGG | + | chr1_3:52505998-52506017 | None:intergenic | 50.0% |
| !! | CACATGTGCTGGTGTTGTGT+AGG | + | chr1_3:52506004-52506023 | None:intergenic | 50.0% |
| CTACACAACACCAGCACATG+TGG | - | chr1_3:52506002-52506021 | Msa0124660:CDS | 50.0% | |
| TCCCCAAGGAGGAAAACTCT+TGG | + | chr1_3:52506535-52506554 | None:intergenic | 50.0% | |
| GATAGGGGCAAGAACAAGGA+CGG | - | chr1_3:52506601-52506620 | Msa0124660:intron | 50.0% | |
| ! | TGCCTTCAATGTTCTGGGCA+AGG | - | chr1_3:52506634-52506653 | Msa0124660:intron | 50.0% |
| GTATGAGAAGCTCCAGTTGG+AGG | + | chr1_3:52506799-52506818 | None:intergenic | 50.0% | |
| CGCAGCTTCATTGGAGTCAT+TGG | + | chr1_3:52507104-52507123 | None:intergenic | 50.0% | |
| CTCAACTCTCGCAGCTTCAT+TGG | + | chr1_3:52507113-52507132 | None:intergenic | 50.0% | |
| CAATGAAGCTGCGAGAGTTG+AGG | - | chr1_3:52507111-52507130 | Msa0124660:intron | 50.0% | |
| GTTTATGGAATGGGTGGGTG+AGG | - | chr1_3:52507431-52507450 | Msa0124660:CDS | 50.0% | |
| TGCCCATATTGTGAAGGCCT+AGG | - | chr1_3:52507462-52507481 | Msa0124660:CDS | 50.0% | |
| GCCCATATTGTGAAGGCCTA+GGG | - | chr1_3:52507463-52507482 | Msa0124660:CDS | 50.0% | |
| GCCCTAGGCCTTCACAATAT+GGG | + | chr1_3:52507467-52507486 | None:intergenic | 50.0% | |
| TGCCCTAGGCCTTCACAATA+TGG | + | chr1_3:52507468-52507487 | None:intergenic | 50.0% | |
| TCGAGGGAAAACGATGGTGT+AGG | - | chr1_3:52507506-52507525 | Msa0124660:CDS | 50.0% | |
| GTGACGGTTATGGGAACGGT+AGG | + | chr1_3:52504598-52504617 | None:intergenic | 55.0% | |
| GAATGGAGCAGTGAGCGGTA+AGG | + | chr1_3:52504705-52504724 | None:intergenic | 55.0% | |
| ATCGGGAATGGAGCAGTGAG+CGG | + | chr1_3:52504710-52504729 | None:intergenic | 55.0% | |
| GTGTTCTTCGCGATCGGGAA+TGG | + | chr1_3:52504722-52504741 | None:intergenic | 55.0% | |
| GTTGTTCTTCACGGAGCCAG+CGG | + | chr1_3:52504744-52504763 | None:intergenic | 55.0% | |
| GGCTCCGTGAAGAACAACGA+TGG | - | chr1_3:52504746-52504765 | Msa0124660:three_prime_UTR | 55.0% | |
| AGAACAACGATGGCTTCGCG+AGG | - | chr1_3:52504756-52504775 | Msa0124660:three_prime_UTR | 55.0% | |
| GGATTCGCGAGGAGAATCGA+TGG | - | chr1_3:52504788-52504807 | Msa0124660:three_prime_UTR | 55.0% | |
| GAATGTTGCGGCGTTGCTAC+AGG | - | chr1_3:52504930-52504949 | Msa0124660:intron | 55.0% | |
| !! | GGCGTTGCTACAGGTGTTGA+AGG | - | chr1_3:52504939-52504958 | Msa0124660:intron | 55.0% |
| GAGGAGGTTAGTGCTTGAGG+AGG | - | chr1_3:52504996-52505015 | Msa0124660:three_prime_UTR | 55.0% | |
| ! | GGGATTTTACTCGGGTGAGG+AGG | - | chr1_3:52505306-52505325 | Msa0124660:intron | 55.0% |
| TTACTCGGGTGAGGAGGACA+TGG | - | chr1_3:52505312-52505331 | Msa0124660:intron | 55.0% | |
| CTGAGCGTGCTGTGAAGACT+TGG | - | chr1_3:52505359-52505378 | Msa0124660:intron | 55.0% | |
| GACGTCATGATCCCATCCTC+AGG | + | chr1_3:52505708-52505727 | None:intergenic | 55.0% | |
| TCCTCCTTGGGGAAAATCGG+TGG | - | chr1_3:52506542-52506561 | Msa0124660:intron | 55.0% | |
| CCTCCTTGGGGAAAATCGGT+GGG | - | chr1_3:52506543-52506562 | Msa0124660:intron | 55.0% | |
| !!! | CTTCCCACCGATTTTCCCCA+AGG | + | chr1_3:52506549-52506568 | None:intergenic | 55.0% |
| TGAAGCTGCGAGAGTTGAGG+TGG | - | chr1_3:52507114-52507133 | Msa0124660:intron | 55.0% | |
| CAGCGGTGTTCTTCGCGATC+GGG | + | chr1_3:52504727-52504746 | None:intergenic | 60.0% | |
| CCAGCGGTGTTCTTCGCGAT+CGG | + | chr1_3:52504728-52504747 | None:intergenic | 60.0% | |
| GATGGCTTCGCGAGGAGCAA+CGG | - | chr1_3:52504764-52504783 | Msa0124660:three_prime_UTR | 60.0% | |
| GTCTTCGTTGGGCATCCCTG+AGG | - | chr1_3:52505689-52505708 | Msa0124660:intron | 60.0% | |
| TCGTTGGGCATCCCTGAGGA+TGG | - | chr1_3:52505693-52505712 | Msa0124660:intron | 60.0% | |
| CGTTGGGCATCCCTGAGGAT+GGG | - | chr1_3:52505694-52505713 | Msa0124660:intron | 60.0% | |
| !!! | CCCACCGATTTTCCCCAAGG+AGG | + | chr1_3:52506546-52506565 | None:intergenic | 60.0% |
| CCGATCGCGAAGAACACCGC+TGG | - | chr1_3:52504725-52504744 | Msa0124660:three_prime_UTR | 65.0% | |
| ! | GGAGCAACGGTGGATTCGCG+AGG | - | chr1_3:52504777-52504796 | Msa0124660:three_prime_UTR | 65.0% |
| GGCTTCGCGAGGAGCAACGG+TGG | - | chr1_3:52504767-52504786 | Msa0124660:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 52504576 | 52507977 | 52504576 | ID=Msa0124660;Name=Msa0124660 |
| chr1_3 | mRNA | 52504576 | 52507977 | 52504576 | ID=Msa0124660-mRNA-1;Parent=Msa0124660;Name=Msa0124660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=4|1|1|1|0.83|0.85|7|365|393 |
| chr1_3 | exon | 52504576 | 52504907 | 52504576 | ID=Msa0124660-mRNA-1:exon:16153;Parent=Msa0124660-mRNA-1 |
| chr1_3 | exon | 52504993 | 52505121 | 52504993 | ID=Msa0124660-mRNA-1:exon:16152;Parent=Msa0124660-mRNA-1 |
| chr1_3 | exon | 52505219 | 52505256 | 52505219 | ID=Msa0124660-mRNA-1:exon:16151;Parent=Msa0124660-mRNA-1 |
| chr1_3 | exon | 52505880 | 52506120 | 52505880 | ID=Msa0124660-mRNA-1:exon:16150;Parent=Msa0124660-mRNA-1 |
| chr1_3 | exon | 52506735 | 52506863 | 52506735 | ID=Msa0124660-mRNA-1:exon:16149;Parent=Msa0124660-mRNA-1 |
| chr1_3 | exon | 52507169 | 52507264 | 52507169 | ID=Msa0124660-mRNA-1:exon:16148;Parent=Msa0124660-mRNA-1 |
| chr1_3 | exon | 52507392 | 52507977 | 52507392 | ID=Msa0124660-mRNA-1:exon:16147;Parent=Msa0124660-mRNA-1 |
| chr1_3 | five_prime_UTR | 52507974 | 52507977 | 52507974 | ID=Msa0124660-mRNA-1:five_prime_utr;Parent=Msa0124660-mRNA-1 |
| chr1_3 | CDS | 52507392 | 52507973 | 52507392 | ID=Msa0124660-mRNA-1:cds;Parent=Msa0124660-mRNA-1 |
| chr1_3 | CDS | 52507169 | 52507264 | 52507169 | ID=Msa0124660-mRNA-1:cds;Parent=Msa0124660-mRNA-1 |
| chr1_3 | CDS | 52506735 | 52506863 | 52506735 | ID=Msa0124660-mRNA-1:cds;Parent=Msa0124660-mRNA-1 |
| chr1_3 | CDS | 52505880 | 52506120 | 52505880 | ID=Msa0124660-mRNA-1:cds;Parent=Msa0124660-mRNA-1 |
| chr1_3 | CDS | 52505219 | 52505256 | 52505219 | ID=Msa0124660-mRNA-1:cds;Parent=Msa0124660-mRNA-1 |
| chr1_3 | CDS | 52505026 | 52505121 | 52505026 | ID=Msa0124660-mRNA-1:cds;Parent=Msa0124660-mRNA-1 |
| chr1_3 | three_prime_UTR | 52504993 | 52505025 | 52504993 | ID=Msa0124660-mRNA-1:three_prime_utr;Parent=Msa0124660-mRNA-1 |
| chr1_3 | three_prime_UTR | 52504576 | 52504907 | 52504576 | ID=Msa0124660-mRNA-1:three_prime_utr;Parent=Msa0124660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
