Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084900 | XP_003591899.1 | 97.143 | 280 | 6 | 1 | 23 | 300 | 1 | 280 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084900 | G7I387 | 97.143 | 280 | 6 | 1 | 23 | 300 | 1 | 280 | 0.0 | 564 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0084900 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036990 | Msa0084900 | 0.804072 | 2.574759e-49 | -8.615850e-47 |
| Msa0040420 | Msa0084900 | 0.843578 | 1.285780e-58 | -8.615850e-47 |
| Msa0053960 | Msa0084900 | 0.815444 | 9.214093e-52 | -8.615850e-47 |
| Msa0084900 | Msa0135070 | 0.827353 | 1.639501e-54 | -8.615850e-47 |
| Msa0084900 | Msa0208710 | 0.812387 | 4.350279e-51 | -8.615850e-47 |
| Msa0084900 | Msa0404060 | 0.800648 | 1.305701e-48 | -8.615850e-47 |
| Msa0084900 | Msa1101300 | 0.807459 | 5.003838e-50 | -8.615850e-47 |
| Msa0084900 | Msa1346340 | 0.807756 | 4.327658e-50 | -8.615850e-47 |
| Msa0084900 | Msa1363560 | 0.808054 | 3.739078e-50 | -8.615850e-47 |
| Msa0084900 | Msa1456620 | 0.804384 | 2.216876e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084900 | MtrunA17_Chr1g0199701 | 97.143 | 280 | 6 | 1 | 23 | 300 | 1 | 280 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084900 | AT2G39000.1 | 65.068 | 292 | 77 | 6 | 23 | 298 | 1 | 283 | 1.87e-133 | 380 |
| Msa0084900 | AT2G39000.3 | 74.779 | 226 | 55 | 1 | 75 | 298 | 2 | 227 | 3.95e-130 | 370 |
| Msa0084900 | AT2G39000.4 | 62.312 | 199 | 50 | 6 | 23 | 205 | 1 | 190 | 1.04e-76 | 233 |
| Msa0084900 | AT2G39000.2 | 61.307 | 199 | 50 | 6 | 23 | 204 | 1 | 189 | 4.68e-76 | 232 |
Find 76 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATCAAACTTTCTTATT+TGG | 0.151315 | 1_2:-64666902 | Msa0084900:CDS |
| AGTATTAAAAGATGAAATTT+TGG | 0.186785 | 1_2:+64667988 | None:intergenic |
| TGTCGCAGCGGCCCCTTTCT+AGG | 0.257128 | 1_2:+64666779 | None:intergenic |
| CATGATCTTGGTAGGGTATA+AGG | 0.293357 | 1_2:+64664985 | None:intergenic |
| TTTCAAATCTATAAAGGTTC+CGG | 0.297267 | 1_2:-64665308 | Msa0084900:CDS |
| TTGGAGGTGTTTATAGGTTT+CGG | 0.317133 | 1_2:+64668007 | None:intergenic |
| GCAAGGTTTCAAATCTATAA+AGG | 0.323365 | 1_2:-64665314 | Msa0084900:CDS |
| AATCAACTACTTTACCATCT+TGG | 0.323444 | 1_2:-64667955 | Msa0084900:CDS |
| TCTAATGGAAATGAATATTC+AGG | 0.338599 | 1_2:+64667025 | None:intergenic |
| AGTGAAGACTTCAAGATTGC+AGG | 0.351286 | 1_2:-64666878 | Msa0084900:CDS |
| ATCAACTACTTTACCATCTT+GGG | 0.351438 | 1_2:-64667954 | Msa0084900:CDS |
| AGGCAAGAATAGAGGATTGT+TGG | 0.356437 | 1_2:-64667081 | Msa0084900:CDS |
| GGCACGGCATCCCCAACTTC+TGG | 0.361672 | 1_2:+64665390 | None:intergenic |
| ATCCTCAACACAAAATCTAA+TGG | 0.371362 | 1_2:+64667010 | None:intergenic |
| TTTCTTACTCCCTCTCAATC+AGG | 0.386333 | 1_2:-64667905 | Msa0084900:intron |
| GCCTCTCTAACAGTGATCTC+AGG | 0.394323 | 1_2:+64667100 | None:intergenic |
| GGCAAGAATAGAGGATTGTT+GGG | 0.399207 | 1_2:-64667080 | Msa0084900:CDS |
| TTCAAATCTATAAAGGTTCC+GGG | 0.414198 | 1_2:-64665307 | Msa0084900:CDS |
| TGTGTTGAGGATGGATAGAT+TGG | 0.415569 | 1_2:-64666999 | Msa0084900:intron |
| ATGAAGTTGAATTTCACATC+TGG | 0.422521 | 1_2:+64665253 | None:intergenic |
| AGAATCACAAGCCAGAAGTT+GGG | 0.428773 | 1_2:-64665401 | Msa0084900:CDS |
| AGGTTCCGGGAGGAGCTAAC+TGG | 0.431391 | 1_2:-64665294 | Msa0084900:CDS |
| ACCTGTCTGGTTGCCGTTGT+TGG | 0.433600 | 1_2:-64666932 | Msa0084900:CDS |
| AGCTAAACAATTGGTGGCTA+AGG | 0.435007 | 1_2:-64665425 | Msa0084900:CDS |
| CAGAATCACAAGCCAGAAGT+TGG | 0.456663 | 1_2:-64665402 | Msa0084900:CDS |
| GCAGGATTCTCTTTACCAAA+TGG | 0.460775 | 1_2:-64666965 | Msa0084900:CDS |
| GAAAGGAATAGCTAAACAAT+TGG | 0.467703 | 1_2:-64665434 | Msa0084900:CDS |
| TGGTATAACTTAGTCGCTGC+AGG | 0.476153 | 1_2:+64665340 | None:intergenic |
| TCTTCATTTAGATATGAACT+TGG | 0.476713 | 1_2:+64665030 | None:intergenic |
| TAGATTTGAAACCTTGCCCT+TGG | 0.481800 | 1_2:+64665320 | None:intergenic |
| AAAGAAAATTCATGAGATGA+AGG | 0.486076 | 1_2:+64667926 | None:intergenic |
| GTTTCTACCTTGCAATTCCA+AGG | 0.490282 | 1_2:+64665087 | None:intergenic |
| AGATTGGTGGCTATGTTAGC+AGG | 0.496959 | 1_2:-64666983 | Msa0084900:CDS |
| GAACAAATCAACAACTTGAC+TGG | 0.498714 | 1_2:+64667135 | None:intergenic |
| AAACATTTGTATAGTTACAT+TGG | 0.518664 | 1_2:-64665068 | Msa0084900:three_prime_UTR |
| GTGGTATTGACCGCATTTCG+TGG | 0.521118 | 1_2:+64668047 | None:intergenic |
| TGAAGAATTGAAGCTTATAA+CGG | 0.523998 | 1_2:-64665013 | Msa0084900:three_prime_UTR |
| TGTTAGAGAGGCAAGAATAG+AGG | 0.524179 | 1_2:-64667089 | Msa0084900:CDS |
| CTCAACAAGGGATATGTGGC+TGG | 0.532427 | 1_2:-64666836 | Msa0084900:CDS |
| TATTGACCGCATTTCGTGGA+GGG | 0.534157 | 1_2:+64668051 | None:intergenic |
| AATAGAGGATTGTTGGGAAG+TGG | 0.538776 | 1_2:-64667074 | Msa0084900:CDS |
| GAATCACAAGCCAGAAGTTG+GGG | 0.540089 | 1_2:-64665400 | Msa0084900:CDS |
| GCCAACAACGGCAACCAGAC+AGG | 0.544657 | 1_2:+64666931 | None:intergenic |
| CTTCATTTAGATATGAACTT+GGG | 0.544755 | 1_2:+64665031 | None:intergenic |
| GACGTGTGTAAGTAAACCCT+TGG | 0.545638 | 1_2:-64665104 | Msa0084900:three_prime_UTR |
| AAGCCTCAACAAGGGATATG+TGG | 0.555870 | 1_2:-64666840 | Msa0084900:CDS |
| AGGAATAGCTAAACAATTGG+TGG | 0.557067 | 1_2:-64665431 | Msa0084900:CDS |
| CCTCTCTAACAGTGATCTCA+GGG | 0.558058 | 1_2:+64667101 | None:intergenic |
| AGGGGCCGCTGCGACAGAGA+AGG | 0.563524 | 1_2:-64666772 | Msa0084900:intron |
| TGGTTGCAAAAGAACCTGTC+TGG | 0.566369 | 1_2:-64666945 | Msa0084900:CDS |
| TTTCTACCTTGCAATTCCAA+GGG | 0.570026 | 1_2:+64665088 | None:intergenic |
| CCCTGAGATCACTGTTAGAG+AGG | 0.573199 | 1_2:-64667101 | Msa0084900:CDS |
| GTTGAGGATGGATAGATTGG+TGG | 0.579094 | 1_2:-64666996 | Msa0084900:intron |
| AATAACACTGAGAGTGAGAA+GGG | 0.583369 | 1_2:+64668134 | None:intergenic |
| TGAGGCCAGTTAGCTCCTCC+CGG | 0.584487 | 1_2:+64665289 | None:intergenic |
| CGCAGTGTAATGCAATGGCA+CGG | 0.588182 | 1_2:+64665374 | None:intergenic |
| AGTAAACCCTTGGAATTGCA+AGG | 0.596414 | 1_2:-64665094 | Msa0084900:three_prime_UTR |
| CAGCCACATATCCCTTGTTG+AGG | 0.606889 | 1_2:+64666837 | None:intergenic |
| ATCAAGTGAATTGCCAACAA+CGG | 0.608883 | 1_2:+64666919 | None:intergenic |
| TAATAACACTGAGAGTGAGA+AGG | 0.609283 | 1_2:+64668133 | None:intergenic |
| GAAATGCGGTCAATACCACT+TGG | 0.610789 | 1_2:-64668043 | Msa0084900:CDS |
| ACTAAGTTATACCAAGGGCA+AGG | 0.625968 | 1_2:-64665331 | Msa0084900:CDS |
| TATAGGTTTCGGAGATACTG+AGG | 0.630791 | 1_2:+64668018 | None:intergenic |
| GTATTGACCGCATTTCGTGG+AGG | 0.631265 | 1_2:+64668050 | None:intergenic |
| TGGGAAATTAAGCCTCAACA+AGG | 0.631474 | 1_2:-64666849 | Msa0084900:CDS |
| TAAATCGCAGTGTAATGCAA+TGG | 0.632285 | 1_2:+64665369 | None:intergenic |
| GATGAAGGTGAAACCCAAGA+TGG | 0.636670 | 1_2:+64667941 | None:intergenic |
| AATTGCATACATATCAAATG+TGG | 0.643430 | 1_2:-64665479 | Msa0084900:CDS |
| AGACAACCCTCCACGAAATG+CGG | 0.648290 | 1_2:-64668057 | Msa0084900:CDS |
| GCAGCGACTAAGTTATACCA+AGG | 0.656357 | 1_2:-64665337 | Msa0084900:CDS |
| CAGCGACTAAGTTATACCAA+GGG | 0.685126 | 1_2:-64665336 | Msa0084900:CDS |
| GGGAAATTAAGCCTCAACAA+GGG | 0.686786 | 1_2:-64666848 | Msa0084900:CDS |
| GGAGATACTGAGGTTCCAAG+TGG | 0.704704 | 1_2:+64668028 | None:intergenic |
| ACTCACCTTCTCTGTCGCAG+CGG | 0.715430 | 1_2:+64666767 | None:intergenic |
| AAATCTATAAAGGTTCCGGG+AGG | 0.724022 | 1_2:-64665304 | Msa0084900:CDS |
| CTCTCTAACAGTGATCTCAG+GGG | 0.746520 | 1_2:+64667102 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATGTTTTTAAATAATTTT+GGG | + | chr1_2:64665824-64665843 | None:intergenic | 10.0% |
| !!! | TACATGTTTTTAAATAATTT+TGG | + | chr1_2:64665825-64665844 | None:intergenic | 10.0% |
| !!! | AAATTAATTTTAACATGTTT+TGG | + | chr1_2:64666887-64666906 | None:intergenic | 10.0% |
| !!! | AGTATTAAAAGATGAAATTT+TGG | + | chr1_2:64665145-64665164 | None:intergenic | 15.0% |
| !!! | ACTTTTTCAACTTTTTAATT+TGG | - | chr1_2:64665250-64665269 | Msa0084900:CDS | 15.0% |
| !!! | AAACTGATTAATTTTGTTAT+TGG | - | chr1_2:64665327-64665346 | Msa0084900:CDS | 15.0% |
| !!! | TTGATTTTGTAAATTTGTTT+TGG | - | chr1_2:64666531-64666550 | Msa0084900:intron | 15.0% |
| !!! | ATAAAAAGTAGTTTGTATTT+TGG | + | chr1_2:64666841-64666860 | None:intergenic | 15.0% |
| !! | TAATTATCTGAAAATTGTTA+AGG | + | chr1_2:64666950-64666969 | None:intergenic | 15.0% |
| !! | TTATGTATAAAAACTATTGT+AGG | - | chr1_2:64667623-64667642 | Msa0084900:intron | 15.0% |
| !!! | ATTAAAAGATGAAATTTTGG+AGG | + | chr1_2:64665142-64665161 | None:intergenic | 20.0% |
| !!! | TTTTTAAGGAATTTAGTAGA+TGG | - | chr1_2:64665285-64665304 | Msa0084900:CDS | 20.0% |
| !!! | TTTTAAGGAATTTAGTAGAT+GGG | - | chr1_2:64665286-64665305 | Msa0084900:CDS | 20.0% |
| !! | ACCTATTTATTTACTACAAT+TGG | - | chr1_2:64665535-64665554 | Msa0084900:intron | 20.0% |
| !!! | AGTTAGGTAGTATTTTAAAT+TGG | - | chr1_2:64665608-64665627 | Msa0084900:intron | 20.0% |
| !! | TTGAATGTAAAATGTTTGAA+TGG | - | chr1_2:64666565-64666584 | Msa0084900:intron | 20.0% |
| !!! | ATCTTTTTCTTATAATTGGT+AGG | + | chr1_2:64667087-64667106 | None:intergenic | 20.0% |
| !!! | CTGTATCTTTTTCTTATAAT+TGG | + | chr1_2:64667091-64667110 | None:intergenic | 20.0% |
| !! | ATCAAAATTATAGCATTAAG+CGG | - | chr1_2:64667242-64667261 | Msa0084900:intron | 20.0% |
| !!! | TAAATAGTTTACCATTTTGA+AGG | + | chr1_2:64667523-64667542 | None:intergenic | 20.0% |
| !!! | TATGTTTCTAACTATGTATT+AGG | - | chr1_2:64667541-64667560 | Msa0084900:intron | 20.0% |
| !! | AACATAAAAACTCTAATCTA+TGG | + | chr1_2:64667951-64667970 | None:intergenic | 20.0% |
| !! | AAGAAAAAATGTAGTAAGAT+GGG | - | chr1_2:64667993-64668012 | Msa0084900:CDS | 20.0% |
| !! | AAACATTTGTATAGTTACAT+TGG | - | chr1_2:64668062-64668081 | Msa0084900:CDS | 20.0% |
| ! | AAAGAAAATTCATGAGATGA+AGG | + | chr1_2:64665207-64665226 | None:intergenic | 25.0% |
| !!! | GGTCTTCTTTGTTTTTTTTA+AGG | - | chr1_2:64665271-64665290 | Msa0084900:CDS | 25.0% |
| !!! | AATTTTGTTATTGGATGAAG+TGG | - | chr1_2:64665336-64665355 | Msa0084900:CDS | 25.0% |
| ! | GTGATGAAAATGAATTAAAC+TGG | - | chr1_2:64665451-64665470 | Msa0084900:CDS | 25.0% |
| ! | ATGAAAATGAATTAAACTGG+AGG | - | chr1_2:64665454-64665473 | Msa0084900:CDS | 25.0% |
| !!! | TTTTCAATTAGTGTTGTTCA+AGG | - | chr1_2:64665478-64665497 | Msa0084900:CDS | 25.0% |
| !! | TTTCAATTAGTGTTGTTCAA+GGG | - | chr1_2:64665479-64665498 | Msa0084900:CDS | 25.0% |
| ! | GCCAATTGTAGTAAATAAAT+AGG | + | chr1_2:64665539-64665558 | None:intergenic | 25.0% |
| ! | CAACATGTATTTGAATACTA+CGG | + | chr1_2:64665635-64665654 | None:intergenic | 25.0% |
| ! | GAATTCTAAGCTTGATTAAT+AGG | - | chr1_2:64665663-64665682 | Msa0084900:intron | 25.0% |
| !!! | GTATATTTTCACTTTTGAAC+CGG | - | chr1_2:64665777-64665796 | Msa0084900:intron | 25.0% |
| !!! | TATATTTTCACTTTTGAACC+GGG | - | chr1_2:64665778-64665797 | Msa0084900:intron | 25.0% |
| !! | ATTTAAGTTAAGGAGTGAAA+TGG | - | chr1_2:64665881-64665900 | Msa0084900:intron | 25.0% |
| ! | GAAGTTAACATCACAAATTA+GGG | + | chr1_2:64665929-64665948 | None:intergenic | 25.0% |
| !! | CTAATTTGTGATGTTAACTT+CGG | - | chr1_2:64665928-64665947 | Msa0084900:intron | 25.0% |
| ! | TCTAATGGAAATGAATATTC+AGG | + | chr1_2:64666108-64666127 | None:intergenic | 25.0% |
| ! | CTTGATCAAACTTTCTTATT+TGG | - | chr1_2:64666228-64666247 | Msa0084900:intron | 25.0% |
| ! | AAAAGTTGACAACAGTATAT+AGG | + | chr1_2:64666430-64666449 | None:intergenic | 25.0% |
| ! | AATGTTTGAATGGTTTATGT+CGG | - | chr1_2:64666575-64666594 | Msa0084900:intron | 25.0% |
| ! | AAAACTTAAAAGCAATCTAG+AGG | - | chr1_2:64666703-64666722 | Msa0084900:intron | 25.0% |
| ! | AAACTTAAAAGCAATCTAGA+GGG | - | chr1_2:64666704-64666723 | Msa0084900:intron | 25.0% |
| ! | AGATGACTTGAAAATTACAT+GGG | + | chr1_2:64666803-64666822 | None:intergenic | 25.0% |
| !!! | ACAAACTACTTTTTATCTAG+AGG | - | chr1_2:64666845-64666864 | Msa0084900:CDS | 25.0% |
| ! | TGCATCAAAAGACAAAATAA+GGG | + | chr1_2:64667149-64667168 | None:intergenic | 25.0% |
| ! | ATGCATCAAAAGACAAAATA+AGG | + | chr1_2:64667150-64667169 | None:intergenic | 25.0% |
| ! | ATTTAATGTAGAGTCGTATT+TGG | - | chr1_2:64667211-64667230 | Msa0084900:intron | 25.0% |
| ! | TTTAATGTAGAGTCGTATTT+GGG | - | chr1_2:64667212-64667231 | Msa0084900:intron | 25.0% |
| !!! | TTCAGTTTTAAACAAGTGAA+AGG | + | chr1_2:64667400-64667419 | None:intergenic | 25.0% |
| ! | TATAAAAACTATTGTAGGAC+TGG | - | chr1_2:64667628-64667647 | Msa0084900:intron | 25.0% |
| ! | AATTGCATACATATCAAATG+TGG | - | chr1_2:64667651-64667670 | Msa0084900:intron | 25.0% |
| ! | AGAGAAAAATTTAGACAGAA+AGG | - | chr1_2:64667679-64667698 | Msa0084900:intron | 25.0% |
| ! | TTTCAAATCTATAAAGGTTC+CGG | - | chr1_2:64667822-64667841 | Msa0084900:intron | 25.0% |
| ! | GAAGAAAAAATGTAGTAAGA+TGG | - | chr1_2:64667992-64668011 | Msa0084900:CDS | 25.0% |
| ! | CTTCATTTAGATATGAACTT+GGG | + | chr1_2:64668102-64668121 | None:intergenic | 25.0% |
| ! | TCTTCATTTAGATATGAACT+TGG | + | chr1_2:64668103-64668122 | None:intergenic | 25.0% |
| ! | TGAAGAATTGAAGCTTATAA+CGG | - | chr1_2:64668117-64668136 | Msa0084900:exon | 25.0% |
| !!! | GAAATTTTGGAGGTGTTTAT+AGG | + | chr1_2:64665132-64665151 | None:intergenic | 30.0% |
| AATCAACTACTTTACCATCT+TGG | - | chr1_2:64665175-64665194 | Msa0084900:three_prime_UTR | 30.0% | |
| ATCAACTACTTTACCATCTT+GGG | - | chr1_2:64665176-64665195 | Msa0084900:three_prime_UTR | 30.0% | |
| AAAAAGTTACCTGATTGAGA+GGG | + | chr1_2:64665237-64665256 | None:intergenic | 30.0% | |
| TCTAAGCTTGATTAATAGGA+AGG | - | chr1_2:64665667-64665686 | Msa0084900:intron | 30.0% | |
| ! | CTAGCCATCTATTTAAGTTA+AGG | - | chr1_2:64665871-64665890 | Msa0084900:intron | 30.0% |
| CACTCCTTAACTTAAATAGA+TGG | + | chr1_2:64665878-64665897 | None:intergenic | 30.0% | |
| AAGGAGTGAAATGGATATAT+AGG | - | chr1_2:64665890-64665909 | Msa0084900:intron | 30.0% | |
| AGGAGTGAAATGGATATATA+GGG | - | chr1_2:64665891-64665910 | Msa0084900:intron | 30.0% | |
| CGAAGTTAACATCACAAATT+AGG | + | chr1_2:64665930-64665949 | None:intergenic | 30.0% | |
| GAACTTAAAGTTATGGTGTT+TGG | - | chr1_2:64665954-64665973 | Msa0084900:intron | 30.0% | |
| ! | TTCCATTAGATTTTGTGTTG+AGG | - | chr1_2:64666118-64666137 | Msa0084900:intron | 30.0% |
| ATCCTCAACACAAAATCTAA+TGG | + | chr1_2:64666123-64666142 | None:intergenic | 30.0% | |
| ! | ATTAGATTTTGTGTTGAGGA+TGG | - | chr1_2:64666122-64666141 | Msa0084900:intron | 30.0% |
| TCTGAATCTGAATTTATGAC+AGG | - | chr1_2:64666397-64666416 | Msa0084900:intron | 30.0% | |
| TTGAATCAAACACACACTTA+CGG | + | chr1_2:64666485-64666504 | None:intergenic | 30.0% | |
| TAAGTGTGTGTTTGATTCAA+TGG | - | chr1_2:64666485-64666504 | Msa0084900:intron | 30.0% | |
| ATGTTTGAATGGTTTATGTC+GGG | - | chr1_2:64666576-64666595 | Msa0084900:intron | 30.0% | |
| CAGATGACTTGAAAATTACA+TGG | + | chr1_2:64666804-64666823 | None:intergenic | 30.0% | |
| TCTACATTAAATGCTCTTTG+AGG | + | chr1_2:64667203-64667222 | None:intergenic | 30.0% | |
| GAAAGGAATAGCTAAACAAT+TGG | - | chr1_2:64667696-64667715 | Msa0084900:intron | 30.0% | |
| GCAAGGTTTCAAATCTATAA+AGG | - | chr1_2:64667816-64667835 | Msa0084900:intron | 30.0% | |
| TTCAAATCTATAAAGGTTCC+GGG | - | chr1_2:64667823-64667842 | Msa0084900:intron | 30.0% | |
| ATGAAGTTGAATTTCACATC+TGG | + | chr1_2:64667880-64667899 | None:intergenic | 30.0% | |
| !! | TTGGAGGTGTTTATAGGTTT+CGG | + | chr1_2:64665126-64665145 | None:intergenic | 35.0% |
| GAAAAAGTTACCTGATTGAG+AGG | + | chr1_2:64665238-64665257 | None:intergenic | 35.0% | |
| !! | AGATGGGTTTGTTGAATTTG+TGG | - | chr1_2:64665302-64665321 | Msa0084900:CDS | 35.0% |
| CATCATCAGCTAGCAAAAAT+TGG | + | chr1_2:64665383-64665402 | None:intergenic | 35.0% | |
| ATTTCTCAGAAGACAAGTTG+AGG | + | chr1_2:64665431-64665450 | None:intergenic | 35.0% | |
| ACAATTGGCAATGCTATTGT+TGG | - | chr1_2:64665550-64665569 | Msa0084900:intron | 35.0% | |
| ATAAGTGGGTAGGTTTAGTT+AGG | - | chr1_2:64665592-64665611 | Msa0084900:intron | 35.0% | |
| TAGCTATTAGAAGATCAACC+CGG | + | chr1_2:64665799-64665818 | None:intergenic | 35.0% | |
| TTTGTGATGTTAACTTCGGT+AGG | - | chr1_2:64665932-64665951 | Msa0084900:intron | 35.0% | |
| TCGGTAGGAACTTAAAGTTA+TGG | - | chr1_2:64665947-64665966 | Msa0084900:intron | 35.0% | |
| AAGTTATGGTGTTTGGATGT+AGG | - | chr1_2:64665961-64665980 | Msa0084900:intron | 35.0% | |
| GAACAAATCAACAACTTGAC+TGG | + | chr1_2:64665998-64666017 | None:intergenic | 35.0% | |
| ATCAAGTGAATTGCCAACAA+CGG | + | chr1_2:64666214-64666233 | None:intergenic | 35.0% | |
| !! | TTCAAGATTGCAGGTTTTGA+TGG | - | chr1_2:64666261-64666280 | Msa0084900:intron | 35.0% |
| !! | TCAAGATTGCAGGTTTTGAT+GGG | - | chr1_2:64666262-64666281 | Msa0084900:intron | 35.0% |
| ! | TGCAGATTTTCTACCTAGAA+AGG | - | chr1_2:64666338-64666357 | Msa0084900:intron | 35.0% |
| ! | GCAGATTTTCTACCTAGAAA+GGG | - | chr1_2:64666339-64666358 | Msa0084900:intron | 35.0% |
| ! | CAGATTTTCTACCTAGAAAG+GGG | - | chr1_2:64666340-64666359 | Msa0084900:intron | 35.0% |
| CTGAATTTATGACAGGAATC+TGG | - | chr1_2:64666404-64666423 | Msa0084900:intron | 35.0% | |
| TTAAAAGCAATCTAGAGGGT+TGG | - | chr1_2:64666708-64666727 | Msa0084900:intron | 35.0% | |
| !!! | TTGGTTTTGCCATCTAGAAA+GGG | - | chr1_2:64666735-64666754 | Msa0084900:intron | 35.0% |
| TAAGTCTAACCCTTTCTAGA+TGG | + | chr1_2:64666747-64666766 | None:intergenic | 35.0% | |
| ACATGGGAATGAAAAGTAAG+CGG | + | chr1_2:64666787-64666806 | None:intergenic | 35.0% | |
| ! | CATTTTCTTATACACGAGAC+TGG | + | chr1_2:64667049-64667068 | None:intergenic | 35.0% |
| !! | GGTAACACTTGCTGTTTATA+TGG | + | chr1_2:64667178-64667197 | None:intergenic | 35.0% |
| ! | CATTAAATGCTCTTTGAGGA+TGG | + | chr1_2:64667199-64667218 | None:intergenic | 35.0% |
| TCTCTTCATATTGATCACTG+AGG | - | chr1_2:64667427-64667446 | Msa0084900:intron | 35.0% | |
| TCCTGCATTAACCTTCAAAA+TGG | - | chr1_2:64667509-64667528 | Msa0084900:intron | 35.0% | |
| !! | ACCATTTTGAAGGTTAATGC+AGG | + | chr1_2:64667513-64667532 | None:intergenic | 35.0% |
| AGGAATAGCTAAACAATTGG+TGG | - | chr1_2:64667699-64667718 | Msa0084900:intron | 35.0% | |
| TAAATCGCAGTGTAATGCAA+TGG | + | chr1_2:64667764-64667783 | None:intergenic | 35.0% | |
| TTTCTACCTTGCAATTCCAA+GGG | + | chr1_2:64668045-64668064 | None:intergenic | 35.0% | |
| TATAGGTTTCGGAGATACTG+AGG | + | chr1_2:64665115-64665134 | None:intergenic | 40.0% | |
| TTTCTTACTCCCTCTCAATC+AGG | - | chr1_2:64665225-64665244 | Msa0084900:CDS | 40.0% | |
| ! | CAATTAGTGTTGTTCAAGGG+AGG | - | chr1_2:64665482-64665501 | Msa0084900:CDS | 40.0% |
| ACTCGTAGTTCCTGATAAGT+GGG | - | chr1_2:64665578-64665597 | Msa0084900:intron | 40.0% | |
| ACTAAACCTACCCACTTATC+AGG | + | chr1_2:64665591-64665610 | None:intergenic | 40.0% | |
| TGATGCTTGATTGCGAAGTT+TGG | + | chr1_2:64665734-64665753 | None:intergenic | 40.0% | |
| TGGCTAGCGTAAAATTGAGA+GGG | + | chr1_2:64665858-64665877 | None:intergenic | 40.0% | |
| ATGGCTAGCGTAAAATTGAG+AGG | + | chr1_2:64665859-64665878 | None:intergenic | 40.0% | |
| GAAATGGATATATAGGGTGC+TGG | - | chr1_2:64665897-64665916 | Msa0084900:intron | 40.0% | |
| TGTTAGAGAGGCAAGAATAG+AGG | - | chr1_2:64666041-64666060 | Msa0084900:intron | 40.0% | |
| AGGCAAGAATAGAGGATTGT+TGG | - | chr1_2:64666049-64666068 | Msa0084900:intron | 40.0% | |
| GGCAAGAATAGAGGATTGTT+GGG | - | chr1_2:64666050-64666069 | Msa0084900:intron | 40.0% | |
| AATAGAGGATTGTTGGGAAG+TGG | - | chr1_2:64666056-64666075 | Msa0084900:intron | 40.0% | |
| TGTGTTGAGGATGGATAGAT+TGG | - | chr1_2:64666131-64666150 | Msa0084900:intron | 40.0% | |
| GCAGGATTCTCTTTACCAAA+TGG | - | chr1_2:64666165-64666184 | Msa0084900:intron | 40.0% | |
| ! | CAGGTTCTTTTGCAACCATT+TGG | + | chr1_2:64666183-64666202 | None:intergenic | 40.0% |
| AGTGAAGACTTCAAGATTGC+AGG | - | chr1_2:64666252-64666271 | Msa0084900:intron | 40.0% | |
| TGGGAAATTAAGCCTCAACA+AGG | - | chr1_2:64666281-64666300 | Msa0084900:intron | 40.0% | |
| GGGAAATTAAGCCTCAACAA+GGG | - | chr1_2:64666282-64666301 | Msa0084900:intron | 40.0% | |
| AAACACACACTTACGGAAGA+TGG | + | chr1_2:64666478-64666497 | None:intergenic | 40.0% | |
| !! | AATCTAGAGGGTTGGTAAGT+TGG | - | chr1_2:64666716-64666735 | Msa0084900:intron | 40.0% |
| !!! | GTTGGTTTTGCCATCTAGAA+AGG | - | chr1_2:64666734-64666753 | Msa0084900:intron | 40.0% |
| CTAGAAAGGGTTAGACTTAG+TGG | - | chr1_2:64666748-64666767 | Msa0084900:intron | 40.0% | |
| CATGGGAATGAAAAGTAAGC+GGG | + | chr1_2:64666786-64666805 | None:intergenic | 40.0% | |
| TGTTAAGGCATGTCTCGAAT+CGG | + | chr1_2:64666935-64666954 | None:intergenic | 40.0% | |
| TTCTTATACACGAGACTGGA+GGG | + | chr1_2:64667045-64667064 | None:intergenic | 40.0% | |
| TTTCTTATACACGAGACTGG+AGG | + | chr1_2:64667046-64667065 | None:intergenic | 40.0% | |
| ATTGATCACTGAGGCAAGAA+TGG | - | chr1_2:64667436-64667455 | Msa0084900:intron | 40.0% | |
| !! | CTGAGGCAAGAATGGATTTT+TGG | - | chr1_2:64667444-64667463 | Msa0084900:intron | 40.0% |
| ! | AGCTAAACAATTGGTGGCTA+AGG | - | chr1_2:64667705-64667724 | Msa0084900:intron | 40.0% |
| AGAATCACAAGCCAGAAGTT+GGG | - | chr1_2:64667729-64667748 | Msa0084900:intron | 40.0% | |
| CAGCGACTAAGTTATACCAA+GGG | - | chr1_2:64667794-64667813 | Msa0084900:intron | 40.0% | |
| ACTAAGTTATACCAAGGGCA+AGG | - | chr1_2:64667799-64667818 | Msa0084900:intron | 40.0% | |
| ! | TAGATTTGAAACCTTGCCCT+TGG | + | chr1_2:64667813-64667832 | None:intergenic | 40.0% |
| AAATCTATAAAGGTTCCGGG+AGG | - | chr1_2:64667826-64667845 | Msa0084900:intron | 40.0% | |
| ! | TTCACATCTGGAGACGTTTT+TGG | + | chr1_2:64667868-64667887 | None:intergenic | 40.0% |
| AGTAAACCCTTGGAATTGCA+AGG | - | chr1_2:64668036-64668055 | Msa0084900:CDS | 40.0% | |
| GTTTCTACCTTGCAATTCCA+AGG | + | chr1_2:64668046-64668065 | None:intergenic | 40.0% | |
| TATTGACCGCATTTCGTGGA+GGG | + | chr1_2:64665082-64665101 | None:intergenic | 45.0% | |
| GAAATGCGGTCAATACCACT+TGG | - | chr1_2:64665087-64665106 | Msa0084900:three_prime_UTR | 45.0% | |
| GATGAAGGTGAAACCCAAGA+TGG | + | chr1_2:64665192-64665211 | None:intergenic | 45.0% | |
| ! | TAGTGTTGTTCAAGGGAGGT+AGG | - | chr1_2:64665486-64665505 | Msa0084900:CDS | 45.0% |
| GACTCGTAGTTCCTGATAAG+TGG | - | chr1_2:64665577-64665596 | Msa0084900:intron | 45.0% | |
| GTAGTTCCTGATAAGTGGGT+AGG | - | chr1_2:64665582-64665601 | Msa0084900:intron | 45.0% | |
| GGCTAGCGTAAAATTGAGAG+GGG | + | chr1_2:64665857-64665876 | None:intergenic | 45.0% | |
| CTCTCTAACAGTGATCTCAG+GGG | + | chr1_2:64666031-64666050 | None:intergenic | 45.0% | |
| CCTCTCTAACAGTGATCTCA+GGG | + | chr1_2:64666032-64666051 | None:intergenic | 45.0% | |
| GTTGAGGATGGATAGATTGG+TGG | - | chr1_2:64666134-64666153 | Msa0084900:intron | 45.0% | |
| ! | AGATTGGTGGCTATGTTAGC+AGG | - | chr1_2:64666147-64666166 | Msa0084900:intron | 45.0% |
| TGGTTGCAAAAGAACCTGTC+TGG | - | chr1_2:64666185-64666204 | Msa0084900:intron | 45.0% | |
| AAGCCTCAACAAGGGATATG+TGG | - | chr1_2:64666290-64666309 | Msa0084900:intron | 45.0% | |
| GTTAAGGCATGTCTCGAATC+GGG | + | chr1_2:64666934-64666953 | None:intergenic | 45.0% | |
| ATAAATGTTACTCCCTGCCC+TGG | + | chr1_2:64667283-64667302 | None:intergenic | 45.0% | |
| GCATGTCGATAGTTTCTTCG+TGG | - | chr1_2:64667363-64667382 | Msa0084900:intron | 45.0% | |
| CAGAATCACAAGCCAGAAGT+TGG | - | chr1_2:64667728-64667747 | Msa0084900:intron | 45.0% | |
| GAATCACAAGCCAGAAGTTG+GGG | - | chr1_2:64667730-64667749 | Msa0084900:intron | 45.0% | |
| TGGTATAACTTAGTCGCTGC+AGG | + | chr1_2:64667793-64667812 | None:intergenic | 45.0% | |
| GCAGCGACTAAGTTATACCA+AGG | - | chr1_2:64667793-64667812 | Msa0084900:intron | 45.0% | |
| !!! | TCTGGAGACGTTTTTGGTTG+AGG | + | chr1_2:64667862-64667881 | None:intergenic | 45.0% |
| GACGTGTGTAAGTAAACCCT+TGG | - | chr1_2:64668026-64668045 | Msa0084900:CDS | 45.0% | |
| AGACAACCCTCCACGAAATG+CGG | - | chr1_2:64665073-64665092 | Msa0084900:three_prime_UTR | 50.0% | |
| ! | GTATTGACCGCATTTCGTGG+AGG | + | chr1_2:64665083-64665102 | None:intergenic | 50.0% |
| !! | GTGGTATTGACCGCATTTCG+TGG | + | chr1_2:64665086-64665105 | None:intergenic | 50.0% |
| GGAGATACTGAGGTTCCAAG+TGG | + | chr1_2:64665105-64665124 | None:intergenic | 50.0% | |
| CCCTGAGATCACTGTTAGAG+AGG | - | chr1_2:64666029-64666048 | Msa0084900:intron | 50.0% | |
| GCCTCTCTAACAGTGATCTC+AGG | + | chr1_2:64666033-64666052 | None:intergenic | 50.0% | |
| CAGCCACATATCCCTTGTTG+AGG | + | chr1_2:64666296-64666315 | None:intergenic | 50.0% | |
| CTCAACAAGGGATATGTGGC+TGG | - | chr1_2:64666294-64666313 | Msa0084900:intron | 50.0% | |
| GGTCTCATCTTCTTCGACCA+GGG | - | chr1_2:64667263-64667282 | Msa0084900:intron | 50.0% | |
| CGCAGTGTAATGCAATGGCA+CGG | + | chr1_2:64667759-64667778 | None:intergenic | 50.0% | |
| ACCTGTCTGGTTGCCGTTGT+TGG | - | chr1_2:64666198-64666217 | Msa0084900:intron | 55.0% | |
| ACTCACCTTCTCTGTCGCAG+CGG | + | chr1_2:64666366-64666385 | None:intergenic | 55.0% | |
| CGGTCTCATCTTCTTCGACC+AGG | - | chr1_2:64667262-64667281 | Msa0084900:intron | 55.0% | |
| TCATCTTCTTCGACCAGGGC+AGG | - | chr1_2:64667267-64667286 | Msa0084900:intron | 55.0% | |
| CATCTTCTTCGACCAGGGCA+GGG | - | chr1_2:64667268-64667287 | Msa0084900:intron | 55.0% | |
| CTACCGCTCTGACTGCAGTG+CGG | + | chr1_2:64665701-64665720 | None:intergenic | 60.0% | |
| GCCAACAACGGCAACCAGAC+AGG | + | chr1_2:64666202-64666221 | None:intergenic | 60.0% | |
| ! | TGGAGGGAGTGTGAGGTGTG+AGG | + | chr1_2:64667029-64667048 | None:intergenic | 60.0% |
| ! | ACGAGACTGGAGGGAGTGTG+AGG | + | chr1_2:64667036-64667055 | None:intergenic | 60.0% |
| AGGTTCCGGGAGGAGCTAAC+TGG | - | chr1_2:64667836-64667855 | Msa0084900:intron | 60.0% | |
| TGAGGCCAGTTAGCTCCTCC+CGG | + | chr1_2:64667844-64667863 | None:intergenic | 60.0% | |
| CAGCCGCACTGCAGTCAGAG+CGG | - | chr1_2:64665695-64665714 | Msa0084900:intron | 65.0% | |
| TGTCGCAGCGGCCCCTTTCT+AGG | + | chr1_2:64666354-64666373 | None:intergenic | 65.0% | |
| GGCACGGCATCCCCAACTTC+TGG | + | chr1_2:64667743-64667762 | None:intergenic | 65.0% | |
| AGGGGCCGCTGCGACAGAGA+AGG | - | chr1_2:64666358-64666377 | Msa0084900:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 64664998 | 64668154 | 64664998 | ID=Msa0084900;Name=Msa0084900 |
| chr1_2 | mRNA | 64664998 | 64668154 | 64664998 | ID=Msa0084900-mRNA-1;Parent=Msa0084900;Name=Msa0084900-mRNA-1;_AED=0.18;_eAED=0.18;_QI=26|0.66|0.5|1|0.66|0.25|4|221|300 |
| chr1_2 | exon | 64664998 | 64665507 | 64664998 | ID=Msa0084900-mRNA-1:exon:21844;Parent=Msa0084900-mRNA-1 |
| chr1_2 | exon | 64666773 | 64667012 | 64666773 | ID=Msa0084900-mRNA-1:exon:21843;Parent=Msa0084900-mRNA-1 |
| chr1_2 | exon | 64667019 | 64667169 | 64667019 | ID=Msa0084900-mRNA-1:exon:21842;Parent=Msa0084900-mRNA-1 |
| chr1_2 | exon | 64667906 | 64668154 | 64667906 | ID=Msa0084900-mRNA-1:exon:21841;Parent=Msa0084900-mRNA-1 |
| chr1_2 | five_prime_UTR | 64668129 | 64668154 | 64668129 | ID=Msa0084900-mRNA-1:five_prime_utr;Parent=Msa0084900-mRNA-1 |
| chr1_2 | CDS | 64667906 | 64668128 | 64667906 | ID=Msa0084900-mRNA-1:cds;Parent=Msa0084900-mRNA-1 |
| chr1_2 | CDS | 64667019 | 64667169 | 64667019 | ID=Msa0084900-mRNA-1:cds;Parent=Msa0084900-mRNA-1 |
| chr1_2 | CDS | 64666773 | 64667012 | 64666773 | ID=Msa0084900-mRNA-1:cds;Parent=Msa0084900-mRNA-1 |
| chr1_2 | CDS | 64665219 | 64665507 | 64665219 | ID=Msa0084900-mRNA-1:cds;Parent=Msa0084900-mRNA-1 |
| chr1_2 | three_prime_UTR | 64664998 | 64665218 | 64664998 | ID=Msa0084900-mRNA-1:three_prime_utr;Parent=Msa0084900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
