AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0053960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053960 MtrunA17_Chr1g0150601 91.607 417 15 3 1 415 1 399 0.0 766
Msa0053960 MtrunA17_Chr8g0369131 31.118 331 178 12 46 371 81 366 1.43e-37 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053960 AT3G43540.1 63.483 356 111 2 61 415 36 373 3.24e-169 479
Msa0053960 AT3G43540.2 63.312 308 95 1 108 415 12 301 7.82e-149 424
Msa0053960 AT5G47860.1 29.213 267 148 7 81 345 100 327 7.26e-31 123

Find 83 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATCTTATAGAGTTAT+TGG 0.155973 1_2:-8511115 Msa0053960:CDS
GCTATTCCTCAACTTACTTA+TGG 0.167683 1_2:-8511254 Msa0053960:CDS
CAATGTCAAACACACATTAT+TGG 0.223972 1_2:-8507822 Msa0053960:intron
TTTCTAGCTATCGAGTAAAT+TGG 0.225245 1_2:+8509455 None:intergenic
TTGGATACACTGCTGACATC+TGG 0.290255 1_2:-8510997 Msa0053960:CDS
ATTGGATTTGCTTCCACTAT+TGG 0.306024 1_2:+8509473 None:intergenic
TGATCAAATGTCACATTATA+AGG 0.308290 1_2:+8511063 None:intergenic
AGGTACTTGTCTATGTTTCA+TGG 0.328572 1_2:-8511500 Msa0053960:CDS
CTATTCCTCAACTTACTTAT+GGG 0.335315 1_2:-8511253 Msa0053960:intron
TGACAAGTTTCATTCTTGTT+TGG 0.336611 1_2:-8511016 Msa0053960:CDS
TTGCGTAAATCATGCAATAT+AGG 0.342084 1_2:-8507324 Msa0053960:three_prime_UTR
AACTTACCTACTTGCCATCT+TGG 0.343767 1_2:+8507476 None:intergenic
CTTCCACTATTGGCATCATC+TGG 0.351852 1_2:+8509483 None:intergenic
TAAATCATGCAATATAGGTT+TGG 0.357750 1_2:-8507319 Msa0053960:three_prime_UTR
TAAGGAACCGCCTCTGTTGC+TGG 0.371759 1_2:+8510319 None:intergenic
CTATGACCAACAGAGAAAAT+AGG 0.381688 1_2:+8510931 None:intergenic
AAGCTGAGCAGGTGACAAAT+TGG 0.383955 1_2:+8510963 None:intergenic
AAATCATGCAATATAGGTTT+GGG 0.385783 1_2:-8507318 Msa0053960:three_prime_UTR
CTCTCCCTTTGAAGAATACT+AGG 0.391651 1_2:-8511520 Msa0053960:CDS
ATTTGTTGATCAGCTGCCTT+TGG 0.398100 1_2:-8508612 Msa0053960:CDS
GAACCAGTCACTAATGGTTC+TGG 0.402684 1_2:+8507385 None:intergenic
ATGAATTTGATTATAGCTCT+TGG 0.412859 1_2:+8511296 None:intergenic
TTGTCACCTGCTCAGCTTGG+AGG 0.413742 1_2:-8510958 Msa0053960:CDS
TTTGATTATAGCTCTTGGTT+TGG 0.424188 1_2:+8511301 None:intergenic
AAGCCTCGTGTGGAGTCCTT+TGG 0.443070 1_2:-8507651 Msa0053960:CDS
GGCGGTTCCTTACTTTGAGC+AGG 0.447793 1_2:-8510308 Msa0053960:intron
GTTAATACCTGCTCAAAGTA+AGG 0.449253 1_2:+8510301 None:intergenic
GAGAGTGAATTTGAAATTTG+AGG 0.453792 1_2:+8511538 None:intergenic
GATTATAGCTCTTGGTTTGG+TGG 0.459125 1_2:+8511304 None:intergenic
TTCTGTTGGATCAATTCTGC+AGG 0.463556 1_2:-8508669 Msa0053960:CDS
ACGTTGGAACCAGTCACTAA+TGG 0.466627 1_2:+8507379 None:intergenic
TGACAATCTTAGTGTAAGCT+TGG 0.477539 1_2:-8507245 Msa0053960:three_prime_UTR
CCTCGTGTGGAGTCCTTTGG+TGG 0.479547 1_2:-8507648 Msa0053960:CDS
AGAGCTATAATCAAATTCAT+TGG 0.482982 1_2:-8511293 Msa0053960:CDS
TGGATACACTGCTGACATCT+GGG 0.483570 1_2:-8510996 Msa0053960:CDS
ACAACACTTCACAATGGAAA+TGG 0.484931 1_2:-8511564 Msa0053960:exon
ATTGATGAATATATTTGTGT+TGG 0.488406 1_2:+8507194 None:intergenic
ATAGCTTCTGATATGTATGT+TGG 0.489993 1_2:-8511392 Msa0053960:CDS
CAGCCAGATGATGCCAATAG+TGG 0.500596 1_2:-8509486 Msa0053960:CDS
GGAAGACCTCCAAGCTGAGC+AGG 0.505657 1_2:+8510952 None:intergenic
CTTTGAGCAACAGCATCTGC+TGG 0.509215 1_2:+8507446 None:intergenic
AATTTGTCACCTGCTCAGCT+TGG 0.510625 1_2:-8510961 Msa0053960:CDS
TTCATTGGTGGTGCTTTCGT+TGG 0.512277 1_2:-8511278 Msa0053960:CDS
GCTCTTGGTTTGGTGGAAGT+AGG 0.513990 1_2:+8511311 None:intergenic
AAGATGGTTCTTGATTCTGT+TGG 0.514302 1_2:-8508683 Msa0053960:CDS
GGTTTGGTGGAAGTAGGTGG+TGG 0.514744 1_2:+8511317 None:intergenic
GGCATCATCTGGCTGACAGC+AGG 0.516429 1_2:+8509494 None:intergenic
TGGAGGTCAAGTATTGCTGT+TGG 0.530331 1_2:-8508476 Msa0053960:CDS
TCTTATAGAGTTATTGGCTA+AGG 0.533548 1_2:-8511109 Msa0053960:CDS
CTTGGTTTGGTGGAAGTAGG+TGG 0.537073 1_2:+8511314 None:intergenic
CAGCAGATGCTGTTGCTCAA+AGG 0.539179 1_2:-8507445 Msa0053960:CDS
ATTTCCATTGTGAAGTGTTG+TGG 0.540234 1_2:+8511566 None:intergenic
AAGTACCTAGTATTCTTCAA+AGG 0.548004 1_2:+8511515 None:intergenic
CCACATCACACCATGCATCC+AGG 0.548875 1_2:-8507595 Msa0053960:intron
AGTACCTAGTATTCTTCAAA+GGG 0.551616 1_2:+8511516 None:intergenic
ATAGAGTTATTGGCTAAGGA+AGG 0.552106 1_2:-8511105 Msa0053960:CDS
TTGCCAGAACCATTAGTGAC+TGG 0.559081 1_2:-8507388 Msa0053960:CDS
TGTTGAATGAATTTGAGTGT+TGG 0.567980 1_2:+8511468 None:intergenic
GCTATAATCAAATTCATTGG+TGG 0.569849 1_2:-8511290 Msa0053960:CDS
CCTGGATGCATGGTGTGATG+TGG 0.584311 1_2:+8507595 None:intergenic
GCTGCCTTTGGTAATGAATG+AGG 0.584490 1_2:-8508600 Msa0053960:intron
CTCGTGTGGAGTCCTTTGGT+GGG 0.599565 1_2:-8507647 Msa0053960:CDS
CACTTCAATCCTCAAAACGT+TGG 0.600227 1_2:+8507363 None:intergenic
TGTTAAAGGGAAAACCTTGG+AGG 0.603512 1_2:-8508493 Msa0053960:intron
TGTAGGAGATGCATGGAAGA+TGG 0.609050 1_2:-8508699 Msa0053960:intron
CAGGAACCAAGATGGCAAGT+AGG 0.610138 1_2:-8507482 Msa0053960:CDS
GCACTTCTTCAAGTACTCAC+AGG 0.613217 1_2:-8510652 Msa0053960:CDS
ACTGAAATCAGGAACCAAGA+TGG 0.615679 1_2:-8507490 Msa0053960:intron
CAATACCCATAAGTAAGTTG+AGG 0.622732 1_2:+8511248 None:intergenic
GCAGGTGACAAATTGGATTG+AGG 0.624270 1_2:+8510970 None:intergenic
AGAAACACTCAAGCCTCGTG+TGG 0.629689 1_2:-8507661 Msa0053960:CDS
AGTCACTAATGGTTCTGGCA+AGG 0.630771 1_2:+8507390 None:intergenic
AATTCTGCAGGAAAGCGAGA+AGG 0.631851 1_2:-8508657 Msa0053960:CDS
ACAGCAATACTTGACCTCCA+AGG 0.634819 1_2:+8508479 None:intergenic
CAACGTGTGTAGGAGATGCA+TGG 0.637363 1_2:-8508706 Msa0053960:intron
CTTTCCACAACACTTCACAA+TGG 0.638101 1_2:-8511570 Msa0053960:exon
CATACCTCATTCATTACCAA+AGG 0.639421 1_2:+8508596 None:intergenic
CAACAACAGACCAGCAACAG+AGG 0.640280 1_2:-8510329 Msa0053960:CDS
CCACCAAAGGACTCCACACG+AGG 0.646706 1_2:+8507648 None:intergenic
ATGTGTTAAAGGGAAAACCT+TGG 0.662296 1_2:-8508496 Msa0053960:intron
TCGATAGCTAGAAATGCACC+AGG 0.665256 1_2:-8509446 Msa0053960:intron
TCTCTCTGTCAGGTTACACA+AGG 0.682754 1_2:-8507902 Msa0053960:intron
CAACAGACCAGCAACAGAGG+CGG 0.696154 1_2:-8510326 Msa0053960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACATTAAAATAAACAAAA+GGG + chr1_2:8507611-8507630 None:intergenic 10.0%
!! TTTACATTAAAATAAACAAA+AGG + chr1_2:8507612-8507631 None:intergenic 10.0%
!! GATTATAAAACTTTATAATC+TGG - chr1_2:8508297-8508316 Msa0053960:intron 15.0%
!!! TTTTCTTTTTCTTTTTTTTG+AGG - chr1_2:8509498-8509517 Msa0053960:CDS 15.0%
!!! TTTCTTTTTCTTTTTTTTGA+GGG - chr1_2:8509499-8509518 Msa0053960:CDS 15.0%
!! TCTCATTAAAAATTACTAAT+AGG + chr1_2:8509964-8509983 None:intergenic 15.0%
!!! TATTAGTAATTTTTAATGAG+AGG - chr1_2:8509963-8509982 Msa0053960:intron 15.0%
!! AATGAAATGAAATGTATTAT+AGG + chr1_2:8511267-8511286 None:intergenic 15.0%
!!! AAGTTTGATTTTTTTCATGT+TGG - chr1_2:8507630-8507649 Msa0053960:CDS 20.0%
!! TAGATATCTTATAGAGTTAT+TGG - chr1_2:8507702-8507721 Msa0053960:CDS 20.0%
!! TATCTATCTATGAACAAAAA+AGG - chr1_2:8508253-8508272 Msa0053960:intron 20.0%
!! ATCTATCTATGAACAAAAAA+GGG - chr1_2:8508254-8508273 Msa0053960:intron 20.0%
!!! TGTTCGAATGTTTTAATTTA+TGG - chr1_2:8508338-8508357 Msa0053960:intron 20.0%
!!! CTTTTAGTTATATCAATTCA+AGG - chr1_2:8508411-8508430 Msa0053960:intron 20.0%
!! AAAAATCAATCACTCTATTA+AGG + chr1_2:8508603-8508622 None:intergenic 20.0%
!!! GAAGTTAAAATTTAGTTTGA+AGG - chr1_2:8508694-8508713 Msa0053960:CDS 20.0%
!!! TTAAAATTTAGTTTGAAGGA+TGG - chr1_2:8508698-8508717 Msa0053960:intron 20.0%
!!! AAACAATGTTCTATACTTTT+AGG + chr1_2:8508737-8508756 None:intergenic 20.0%
!!! TAAAAGTATAGAACATTGTT+TGG - chr1_2:8508736-8508755 Msa0053960:intron 20.0%
!! TGTGTAAATATATATTATCC+AGG + chr1_2:8508790-8508809 None:intergenic 20.0%
!! TTTACACAAAGTAATTAAAG+TGG - chr1_2:8508802-8508821 Msa0053960:intron 20.0%
!! TGTATATATGTGCAAATAAA+TGG - chr1_2:8508942-8508961 Msa0053960:intron 20.0%
!! GTATATATGTGCAAATAAAT+GGG - chr1_2:8508943-8508962 Msa0053960:intron 20.0%
!! TCAATTAGTATAAGCATTAT+CGG - chr1_2:8509035-8509054 Msa0053960:intron 20.0%
!!! TTCTTTTTCTTTTTTTTGAG+GGG - chr1_2:8509500-8509519 Msa0053960:CDS 20.0%
!! CTATTGTTTGAATAAATTAG+AGG - chr1_2:8509765-8509784 Msa0053960:intron 20.0%
!! CATTAAAAATTACTAATAGG+AGG + chr1_2:8509961-8509980 None:intergenic 20.0%
!! AAAGTAAGTTATGAGATATA+GGG + chr1_2:8511032-8511051 None:intergenic 20.0%
!! AAAAGTAAGTTATGAGATAT+AGG + chr1_2:8511033-8511052 None:intergenic 20.0%
!! AAATGAAATGTATTATAGGA+TGG + chr1_2:8511263-8511282 None:intergenic 20.0%
!! ATTGATGAATATATTTGTGT+TGG + chr1_2:8511626-8511645 None:intergenic 20.0%
! ATGAATTTGATTATAGCTCT+TGG + chr1_2:8507524-8507543 None:intergenic 25.0%
! AGAGCTATAATCAAATTCAT+TGG - chr1_2:8507524-8507543 Msa0053960:intron 25.0%
! TGATCAAATGTCACATTATA+AGG + chr1_2:8507757-8507776 None:intergenic 25.0%
! CTAAATATAACCACATATAC+TGG + chr1_2:8507992-8508011 None:intergenic 25.0%
!! TCATTTTCCCAAATTATCAT+TGG - chr1_2:8508017-8508036 Msa0053960:intron 25.0%
!! TTGTTTTCAATTTGTAGCAA+TGG - chr1_2:8508141-8508160 Msa0053960:intron 25.0%
!!! AATAGAGTGATTGATTTTTG+TGG - chr1_2:8508604-8508623 Msa0053960:CDS 25.0%
! TTCCATAACAAAACTTTATG+CGG + chr1_2:8508677-8508696 None:intergenic 25.0%
! AAAGTAATTAAAGTGGTGAA+TGG - chr1_2:8508809-8508828 Msa0053960:intron 25.0%
!! AATACTGGTTATGAATATGT+TGG - chr1_2:8508857-8508876 Msa0053960:intron 25.0%
! GCTTTCTTAAGCATATTTAT+TGG + chr1_2:8508972-8508991 None:intergenic 25.0%
!! CTTCCTGACTTAATTTTATA+TGG - chr1_2:8509193-8509212 Msa0053960:intron 25.0%
! GTATGAAGATGAATGATATA+AGG + chr1_2:8509219-8509238 None:intergenic 25.0%
!!! CATTTTTTGAATGTACAGTT+TGG - chr1_2:8509411-8509430 Msa0053960:intron 25.0%
! AATCTCTAAATTCACTACAT+AGG + chr1_2:8509626-8509645 None:intergenic 25.0%
!! TGTTCTAAATTCAAAAGTCT+TGG - chr1_2:8509661-8509680 Msa0053960:intron 25.0%
! TTAAAATCAGTTAATGCGAT+AGG - chr1_2:8509705-8509724 Msa0053960:intron 25.0%
! TGTTTGAATAAATTAGAGGA+AGG - chr1_2:8509769-8509788 Msa0053960:intron 25.0%
! CACATTATTATGGAATTCAT+TGG - chr1_2:8509991-8510010 Msa0053960:intron 25.0%
! CATTTCAGAGATTAACTATA+AGG - chr1_2:8510045-8510064 Msa0053960:intron 25.0%
!!! TATGTGTTAACTGTTGATTT+TGG - chr1_2:8510240-8510259 Msa0053960:intron 25.0%
! TCAATAAGTAACTAGTATCA+AGG - chr1_2:8510285-8510304 Msa0053960:intron 25.0%
! AAGGGATTATAAACTTCAAA+TGG + chr1_2:8510530-8510549 None:intergenic 25.0%
!! TTTGAAGTTTATAATCCCTT+AGG - chr1_2:8510530-8510549 Msa0053960:intron 25.0%
!! GCTTTTATAGATTAACCTAA+GGG + chr1_2:8510548-8510567 None:intergenic 25.0%
!! AGCTTTTATAGATTAACCTA+AGG + chr1_2:8510549-8510568 None:intergenic 25.0%
!!! CATAACTTACTTTTGAAAGA+CGG - chr1_2:8511039-8511058 Msa0053960:CDS 25.0%
! TAAATCATGCAATATAGGTT+TGG - chr1_2:8511498-8511517 Msa0053960:CDS 25.0%
! AAATCATGCAATATAGGTTT+GGG - chr1_2:8511499-8511518 Msa0053960:CDS 25.0%
! GAGAGTGAATTTGAAATTTG+AGG + chr1_2:8507282-8507301 None:intergenic 30.0%
AGTACCTAGTATTCTTCAAA+GGG + chr1_2:8507304-8507323 None:intergenic 30.0%
AAGTACCTAGTATTCTTCAA+AGG + chr1_2:8507305-8507324 None:intergenic 30.0%
TGTTGAATGAATTTGAGTGT+TGG + chr1_2:8507352-8507371 None:intergenic 30.0%
ATAGCTTCTGATATGTATGT+TGG - chr1_2:8507425-8507444 Msa0053960:CDS 30.0%
TTTGATTATAGCTCTTGGTT+TGG + chr1_2:8507519-8507538 None:intergenic 30.0%
GCTATAATCAAATTCATTGG+TGG - chr1_2:8507527-8507546 Msa0053960:intron 30.0%
CTATTCCTCAACTTACTTAT+GGG - chr1_2:8507564-8507583 Msa0053960:intron 30.0%
! TCTTATAGAGTTATTGGCTA+AGG - chr1_2:8507708-8507727 Msa0053960:CDS 30.0%
TGACAAGTTTCATTCTTGTT+TGG - chr1_2:8507801-8507820 Msa0053960:intron 30.0%
TTCGACACCAATGATAATTT+GGG + chr1_2:8508027-8508046 None:intergenic 30.0%
TTTCGACACCAATGATAATT+TGG + chr1_2:8508028-8508047 None:intergenic 30.0%
TAGTTTAGTACCAATCTTAC+TGG - chr1_2:8508091-8508110 Msa0053960:intron 30.0%
TACCAATCTTACTGGAATTA+AGG - chr1_2:8508099-8508118 Msa0053960:intron 30.0%
TACCTTAATTCCAGTAAGAT+TGG + chr1_2:8508104-8508123 None:intergenic 30.0%
!! ATTTTCTGAGAAACTACCTA+AGG - chr1_2:8508194-8508213 Msa0053960:intron 30.0%
CAGAAATATAACCAAACCTT+AGG + chr1_2:8508213-8508232 None:intergenic 30.0%
! CTAAGGTTTGGTTATATTTC+TGG - chr1_2:8508211-8508230 Msa0053960:intron 30.0%
!!! AAAAGGGTTTTATTGAGACA+TGG - chr1_2:8508270-8508289 Msa0053960:intron 30.0%
ATTCAAGGAATGTGATGAAA+AGG - chr1_2:8508426-8508445 Msa0053960:intron 30.0%
! GAAAAGGTATGTATCTCTTA+TGG - chr1_2:8508442-8508461 Msa0053960:intron 30.0%
! GATTTTTGTGGTTGTGATTA+AGG - chr1_2:8508616-8508635 Msa0053960:CDS 30.0%
! TTGACATTTTGTGTTTAACC+TGG - chr1_2:8508769-8508788 Msa0053960:intron 30.0%
AATCTAAGCATGCTAAATAC+TGG - chr1_2:8508842-8508861 Msa0053960:intron 30.0%
ATTGCATCTGCATGTATAAA+TGG + chr1_2:8509010-8509029 None:intergenic 30.0%
! TAAACTTTCCAGTAAGTTGA+TGG + chr1_2:8509065-8509084 None:intergenic 30.0%
! ACATTAAATTTTGCTGCTGA+TGG - chr1_2:8509107-8509126 Msa0053960:intron 30.0%
AGGCCATATAAAATTAAGTC+AGG + chr1_2:8509199-8509218 None:intergenic 30.0%
!! GTTTTGAATCACAATTGACA+CGG + chr1_2:8509277-8509296 None:intergenic 30.0%
!! TTTCTAGCTATCGAGTAAAT+TGG + chr1_2:8509365-8509384 None:intergenic 30.0%
! TACTGATGAAGTTTTCCAAA+AGG - chr1_2:8509467-8509486 Msa0053960:CDS 30.0%
! AAGAAAAGAACACTTCCTTT+TGG + chr1_2:8509485-8509504 None:intergenic 30.0%
!!! TTCTTTTTTTTGAGGGGAAA+AGG - chr1_2:8509506-8509525 Msa0053960:intron 30.0%
CACTACATAGGAAATATAAC+AGG + chr1_2:8509614-8509633 None:intergenic 30.0%
AACAATATGTCAGAGAGATT+TGG - chr1_2:8509875-8509894 Msa0053960:intron 30.0%
AAAATTACTAATAGGAGGAG+AGG + chr1_2:8509956-8509975 None:intergenic 30.0%
AGAGGTCTAACACATTATTA+TGG - chr1_2:8509981-8510000 Msa0053960:intron 30.0%
!!! TTGCTGTTGGTTTTTTCTAT+AGG - chr1_2:8510354-8510373 Msa0053960:intron 30.0%
AAAGCTTATGATGATCTTTG+CGG - chr1_2:8510563-8510582 Msa0053960:intron 30.0%
TCATAGATCATAATAGACCA+TGG + chr1_2:8510589-8510608 None:intergenic 30.0%
ATTGAATGTAACACATGTGT+CGG - chr1_2:8510676-8510695 Msa0053960:intron 30.0%
! CAGTAACTTGTAAAAAGAGT+GGG + chr1_2:8510817-8510836 None:intergenic 30.0%
CAATGTCAAACACACATTAT+TGG - chr1_2:8510995-8511014 Msa0053960:CDS 30.0%
! GTCTTTCTTTTTGTCTCTTA+AGG - chr1_2:8511090-8511109 Msa0053960:CDS 30.0%
ATAGAAAAAGTAGGATTGAG+TGG - chr1_2:8511196-8511215 Msa0053960:intron 30.0%
TTGCGTAAATCATGCAATAT+AGG - chr1_2:8511493-8511512 Msa0053960:CDS 30.0%
!! ATTTCCATTGTGAAGTGTTG+TGG + chr1_2:8507254-8507273 None:intergenic 35.0%
ACAACACTTCACAATGGAAA+TGG - chr1_2:8507253-8507272 Msa0053960:three_prime_UTR 35.0%
AGGTACTTGTCTATGTTTCA+TGG - chr1_2:8507317-8507336 Msa0053960:three_prime_UTR 35.0%
GCTATTCCTCAACTTACTTA+TGG - chr1_2:8507563-8507582 Msa0053960:intron 35.0%
CAATACCCATAAGTAAGTTG+AGG + chr1_2:8507572-8507591 None:intergenic 35.0%
! ATAGAGTTATTGGCTAAGGA+AGG - chr1_2:8507712-8507731 Msa0053960:intron 35.0%
!!! TAAGGAAGGTTTTGTTGTTG+TGG - chr1_2:8507726-8507745 Msa0053960:intron 35.0%
CTATGACCAACAGAGAAAAT+AGG + chr1_2:8507889-8507908 None:intergenic 35.0%
! CTATTTTCTCTGTTGGTCAT+AGG - chr1_2:8507887-8507906 Msa0053960:CDS 35.0%
CGAAATATCAATGTCGTGTT+TGG - chr1_2:8508043-8508062 Msa0053960:intron 35.0%
AGGTATGTATCTCTTATGGA+AGG - chr1_2:8508446-8508465 Msa0053960:intron 35.0%
GTTAATACCTGCTCAAAGTA+AGG + chr1_2:8508519-8508538 None:intergenic 35.0%
ATTAAAGTGGTGAATGGTGA+TGG - chr1_2:8508815-8508834 Msa0053960:intron 35.0%
TACTGGACAGTTAGAGTAAA+GGG + chr1_2:8509145-8509164 None:intergenic 35.0%
! AGGAAGCATGTTTATTTGAG+TGG + chr1_2:8509179-8509198 None:intergenic 35.0%
! ATTGGATTTGCTTCCACTAT+TGG + chr1_2:8509347-8509366 None:intergenic 35.0%
TTCAAAAAATGCGCAATCTC+AGG + chr1_2:8509402-8509421 None:intergenic 35.0%
CATAGGAAATATAACAGGAG+TGG + chr1_2:8509609-8509628 None:intergenic 35.0%
!! ACTGACTTTGGTCAGTTTTA+TGG + chr1_2:8509919-8509938 None:intergenic 35.0%
!! AAAGTCAGTTTTGACCTTCT+CGG - chr1_2:8509930-8509949 Msa0053960:intron 35.0%
AAGATGGTTCTTGATTCTGT+TGG - chr1_2:8510134-8510153 Msa0053960:intron 35.0%
CATACCTCATTCATTACCAA+AGG + chr1_2:8510224-8510243 None:intergenic 35.0%
AGCTTACGTGATGTGTTAAA+GGG - chr1_2:8510311-8510330 Msa0053960:CDS 35.0%
ATGTGTTAAAGGGAAAACCT+TGG - chr1_2:8510321-8510340 Msa0053960:CDS 35.0%
!! TTAGTTTCTGAGATCTAACC+CGG - chr1_2:8510403-8510422 Msa0053960:intron 35.0%
TAACAATATTTGTCCCACGA+AGG + chr1_2:8510481-8510500 None:intergenic 35.0%
! CCAGTAACTTGTAAAAAGAG+TGG + chr1_2:8510818-8510837 None:intergenic 35.0%
! CCACTCTTTTTACAAGTTAC+TGG - chr1_2:8510815-8510834 Msa0053960:intron 35.0%
! AAGCAATCACGATTTTCAGA+TGG + chr1_2:8510963-8510982 None:intergenic 35.0%
! TTTTTCTATTGTCCCACCAA+AGG + chr1_2:8511185-8511204 None:intergenic 35.0%
!! GTTGCTTCTTTTTCACTGAT+TGG - chr1_2:8511297-8511316 Msa0053960:CDS 35.0%
!! TTTTGAGGATTGAAGTGCTA+GGG - chr1_2:8511460-8511479 Msa0053960:CDS 35.0%
TGACAATCTTAGTGTAAGCT+TGG - chr1_2:8511572-8511591 Msa0053960:exon 35.0%
CTTTCCACAACACTTCACAA+TGG - chr1_2:8507247-8507266 Msa0053960:three_prime_UTR 40.0%
! CTCTCCCTTTGAAGAATACT+AGG - chr1_2:8507297-8507316 Msa0053960:three_prime_UTR 40.0%
!! GATTATAGCTCTTGGTTTGG+TGG + chr1_2:8507516-8507535 None:intergenic 40.0%
! GGTCTTCCTATTTTCTCTGT+TGG - chr1_2:8507880-8507899 Msa0053960:CDS 40.0%
! GTACTGACACTTCAGATTCA+AGG - chr1_2:8507920-8507939 Msa0053960:intron 40.0%
CACATATACTGGTGTCTTGT+CGG + chr1_2:8507981-8508000 None:intergenic 40.0%
CTGAGAAACTACCTAAGGTT+TGG - chr1_2:8508199-8508218 Msa0053960:intron 40.0%
!! TGGTTATATTTCTGGCTGCT+AGG - chr1_2:8508219-8508238 Msa0053960:intron 40.0%
!! GGTTATATTTCTGGCTGCTA+GGG - chr1_2:8508220-8508239 Msa0053960:intron 40.0%
GCAAGGCATATAGAGTCTAT+TGG + chr1_2:8508648-8508667 None:intergenic 40.0%
!!! CGCCGCATAAAGTTTTGTTA+TGG - chr1_2:8508672-8508691 Msa0053960:CDS 40.0%
ACTGGACAGTTAGAGTAAAG+GGG + chr1_2:8509144-8509163 None:intergenic 40.0%
GTACTGGACAGTTAGAGTAA+AGG + chr1_2:8509146-8509165 None:intergenic 40.0%
! AGGAGTGGTAATGAATGTGT+AGG + chr1_2:8509594-8509613 None:intergenic 40.0%
! AGATACCAGTTCTAGCAGAA+TGG + chr1_2:8509747-8509766 None:intergenic 40.0%
! GAGAAGGTCAAAACTGACTT+TGG + chr1_2:8509931-8509950 None:intergenic 40.0%
TTCTGTTGGATCAATTCTGC+AGG - chr1_2:8510148-8510167 Msa0053960:intron 40.0%
! ATTTGTTGATCAGCTGCCTT+TGG - chr1_2:8510205-8510224 Msa0053960:intron 40.0%
CTTTAACACATCACGTAAGC+TGG + chr1_2:8510312-8510331 None:intergenic 40.0%
CAGCTTACGTGATGTGTTAA+AGG - chr1_2:8510310-8510329 Msa0053960:CDS 40.0%
TGTTAAAGGGAAAACCTTGG+AGG - chr1_2:8510324-8510343 Msa0053960:CDS 40.0%
GGCGAATCTTAGTAAGTCAA+TGG - chr1_2:8510375-8510394 Msa0053960:intron 40.0%
!! TAGTTTCTGAGATCTAACCC+GGG - chr1_2:8510404-8510423 Msa0053960:intron 40.0%
!!! ACAATGAAGGAGTTTTGAGC+AGG + chr1_2:8510434-8510453 None:intergenic 40.0%
! TGTAACACATGTGTCGGTAA+CGG - chr1_2:8510682-8510701 Msa0053960:intron 40.0%
TCTAAGTGACACCTAGACTT+CGG + chr1_2:8510728-8510747 None:intergenic 40.0%
TTCCTTGCAAGACGTATGTT+GGG + chr1_2:8510772-8510791 None:intergenic 40.0%
TTTCCTTGCAAGACGTATGT+TGG + chr1_2:8510773-8510792 None:intergenic 40.0%
CGTGTATATATCTCTCTGTC+AGG - chr1_2:8510905-8510924 Msa0053960:intron 40.0%
! TCACGATTTTCAGATGGTGT+TGG + chr1_2:8510957-8510976 None:intergenic 40.0%
!! TTTTGAAAGACGGCTAGCAT+TGG - chr1_2:8511049-8511068 Msa0053960:CDS 40.0%
GGTGGGACAATAGAAAAAGT+AGG - chr1_2:8511187-8511206 Msa0053960:intron 40.0%
! AGAAGTTTTACCTGGATGCA+TGG + chr1_2:8511235-8511254 None:intergenic 40.0%
!! GCTTCTTTTTCACTGATTGG+TGG - chr1_2:8511300-8511319 Msa0053960:CDS 40.0%
! TTGGTGGTTACACTGAAATC+AGG - chr1_2:8511316-8511335 Msa0053960:CDS 40.0%
ACTGAAATCAGGAACCAAGA+TGG - chr1_2:8511327-8511346 Msa0053960:CDS 40.0%
AACTTACCTACTTGCCATCT+TGG + chr1_2:8511344-8511363 None:intergenic 40.0%
CACTTCAATCCTCAAAACGT+TGG + chr1_2:8511457-8511476 None:intergenic 40.0%
!!! GTTTTGAGGATTGAAGTGCT+AGG - chr1_2:8511459-8511478 Msa0053960:CDS 40.0%
!! TTCATTGGTGGTGCTTTCGT+TGG - chr1_2:8507539-8507558 Msa0053960:intron 45.0%
!!! GGAAGGTTTTGTTGTTGTGG+TGG - chr1_2:8507729-8507748 Msa0053960:intron 45.0%
TTGGATACACTGCTGACATC+TGG - chr1_2:8507820-8507839 Msa0053960:intron 45.0%
TGGATACACTGCTGACATCT+GGG - chr1_2:8507821-8507840 Msa0053960:intron 45.0%
GCAGGTGACAAATTGGATTG+AGG + chr1_2:8507850-8507869 None:intergenic 45.0%
AAGCTGAGCAGGTGACAAAT+TGG + chr1_2:8507857-8507876 None:intergenic 45.0%
AATTTGTCACCTGCTCAGCT+TGG - chr1_2:8507856-8507875 Msa0053960:CDS 45.0%
CTTCAGATTCAAGGCGTATC+CGG - chr1_2:8507929-8507948 Msa0053960:intron 45.0%
CGACAAGACACCAGTATATG+TGG - chr1_2:8507979-8507998 Msa0053960:intron 45.0%
GCACTTCTTCAAGTACTCAC+AGG - chr1_2:8508165-8508184 Msa0053960:intron 45.0%
ACAAAACTTTATGCGGCGAC+TGG + chr1_2:8508670-8508689 None:intergenic 45.0%
TCGGCATACCATCAACTTAC+TGG - chr1_2:8509054-8509073 Msa0053960:intron 45.0%
CTTCCACTATTGGCATCATC+TGG + chr1_2:8509337-8509356 None:intergenic 45.0%
TCGATAGCTAGAAATGCACC+AGG - chr1_2:8509371-8509390 Msa0053960:intron 45.0%
CTCAACCATTCTGCTAGAAC+TGG - chr1_2:8509739-8509758 Msa0053960:intron 45.0%
ATGTCATCTGCAACGTGTGT+AGG - chr1_2:8510101-8510120 Msa0053960:intron 45.0%
TGTAGGAGATGCATGGAAGA+TGG - chr1_2:8510118-8510137 Msa0053960:intron 45.0%
AATTCTGCAGGAAAGCGAGA+AGG - chr1_2:8510160-8510179 Msa0053960:intron 45.0%
!! GCTGCCTTTGGTAATGAATG+AGG - chr1_2:8510217-8510236 Msa0053960:intron 45.0%
ACAGCAATACTTGACCTCCA+AGG + chr1_2:8510341-8510360 None:intergenic 45.0%
! TGGAGGTCAAGTATTGCTGT+TGG - chr1_2:8510341-8510360 Msa0053960:CDS 45.0%
!!! ATGAAGGAGTTTTGAGCAGG+AGG + chr1_2:8510431-8510450 None:intergenic 45.0%
GGTGAGATAAGGGACAATGA+AGG + chr1_2:8510447-8510466 None:intergenic 45.0%
!! AGCTTCGGTTGGTGAGATAA+GGG + chr1_2:8510457-8510476 None:intergenic 45.0%
!! TAGCTTCGGTTGGTGAGATA+AGG + chr1_2:8510458-8510477 None:intergenic 45.0%
TATGATGATCTTTGCGGCCA+TGG - chr1_2:8510569-8510588 Msa0053960:intron 45.0%
TCTCTCTGTCAGGTTACACA+AGG - chr1_2:8510915-8510934 Msa0053960:intron 45.0%
! TGGTGCAGAGAAGTTTTACC+TGG + chr1_2:8511243-8511262 None:intergenic 45.0%
!! AGTCACTAATGGTTCTGGCA+AGG + chr1_2:8511430-8511449 None:intergenic 45.0%
TTGCCAGAACCATTAGTGAC+TGG - chr1_2:8511429-8511448 Msa0053960:CDS 45.0%
GAACCAGTCACTAATGGTTC+TGG + chr1_2:8511435-8511454 None:intergenic 45.0%
ACGTTGGAACCAGTCACTAA+TGG + chr1_2:8511441-8511460 None:intergenic 45.0%
!! TGACTGGTTCCAACGTTTTG+AGG - chr1_2:8511445-8511464 Msa0053960:CDS 45.0%
!!! TTAAAAATTAAACTTTTTTT+AGG - chr1_2:8507181-8507200 Msa0053960:three_prime_UTR 5.0%
!!! CTATTTTATAAAATTATTAT+CGG + chr1_2:8510651-8510670 None:intergenic 5.0%
!! CTTGGTTTGGTGGAAGTAGG+TGG + chr1_2:8507506-8507525 None:intergenic 50.0%
!! GCTCTTGGTTTGGTGGAAGT+AGG + chr1_2:8507509-8507528 None:intergenic 50.0%
ATCCGGTGTTCGACACATGT+CGG - chr1_2:8507946-8507965 Msa0053960:intron 50.0%
CAACAACAGACCAGCAACAG+AGG - chr1_2:8508488-8508507 Msa0053960:CDS 50.0%
!! GAGTGGTTCTGATGCTGTAC+TGG + chr1_2:8509162-8509181 None:intergenic 50.0%
! TGCATTGATGTCCTGCAGCT+AGG - chr1_2:8509299-8509318 Msa0053960:intron 50.0%
CAGCCAGATGATGCCAATAG+TGG - chr1_2:8509331-8509350 Msa0053960:intron 50.0%
CAACGTGTGTAGGAGATGCA+TGG - chr1_2:8510111-8510130 Msa0053960:intron 50.0%
TTGTCCCACGAAGGTAGCTT+CGG + chr1_2:8510472-8510491 None:intergenic 50.0%
CTTCGGACTGTAGGCATCTT+TGG + chr1_2:8510711-8510730 None:intergenic 50.0%
ATGCCTACAGTCCGAAGTCT+AGG - chr1_2:8510714-8510733 Msa0053960:intron 50.0%
ACACCTAGACTTCGGACTGT+AGG + chr1_2:8510720-8510739 None:intergenic 50.0%
AGCCCAACATACGTCTTGCA+AGG - chr1_2:8510767-8510786 Msa0053960:intron 50.0%
AGAAACACTCAAGCCTCGTG+TGG - chr1_2:8511156-8511175 Msa0053960:intron 50.0%
CAGGAACCAAGATGGCAAGT+AGG - chr1_2:8511335-8511354 Msa0053960:CDS 50.0%
CTTTGAGCAACAGCATCTGC+TGG + chr1_2:8511374-8511393 None:intergenic 50.0%
CAGCAGATGCTGTTGCTCAA+AGG - chr1_2:8511372-8511391 Msa0053960:CDS 50.0%
!! GGTTTGGTGGAAGTAGGTGG+TGG + chr1_2:8507503-8507522 None:intergenic 55.0%
TTGTCACCTGCTCAGCTTGG+AGG - chr1_2:8507859-8507878 Msa0053960:CDS 55.0%
CACCGACATGTGTCGAACAC+CGG + chr1_2:8507951-8507970 None:intergenic 55.0%
CAACAGACCAGCAACAGAGG+CGG - chr1_2:8508491-8508510 Msa0053960:intron 55.0%
TAAGGAACCGCCTCTGTTGC+TGG + chr1_2:8508501-8508520 None:intergenic 55.0%
GGCGGTTCCTTACTTTGAGC+AGG - chr1_2:8508509-8508528 Msa0053960:intron 55.0%
ACTTTATGCGGCGACTGGCA+AGG + chr1_2:8508665-8508684 None:intergenic 55.0%
GCGCAATCTCAGGTGATACC+TGG + chr1_2:8509392-8509411 None:intergenic 55.0%
AATAGGAGGAGAGGCCGAGA+AGG + chr1_2:8509947-8509966 None:intergenic 55.0%
!!! AGTTTTGAGCAGGAGGACCC+GGG + chr1_2:8510424-8510443 None:intergenic 55.0%
!!! GAGTTTTGAGCAGGAGGACC+CGG + chr1_2:8510425-8510444 None:intergenic 55.0%
ACCAACCGAAGCTACCTTCG+TGG - chr1_2:8510464-8510483 Msa0053960:intron 55.0%
CCAACCGAAGCTACCTTCGT+GGG - chr1_2:8510465-8510484 Msa0053960:intron 55.0%
AAGCCTCGTGTGGAGTCCTT+TGG - chr1_2:8511166-8511185 Msa0053960:intron 55.0%
CTCGTGTGGAGTCCTTTGGT+GGG - chr1_2:8511170-8511189 Msa0053960:intron 55.0%
CCTGGATGCATGGTGTGATG+TGG + chr1_2:8511225-8511244 None:intergenic 55.0%
CCACATCACACCATGCATCC+AGG - chr1_2:8511222-8511241 Msa0053960:intron 55.0%
GGAAGACCTCCAAGCTGAGC+AGG + chr1_2:8507868-8507887 None:intergenic 60.0%
TGACAGCAGGACCTAGCTGC+AGG + chr1_2:8509313-8509332 None:intergenic 60.0%
GGCATCATCTGGCTGACAGC+AGG + chr1_2:8509326-8509345 None:intergenic 60.0%
CCCACGAAGGTAGCTTCGGT+TGG + chr1_2:8510468-8510487 None:intergenic 60.0%
CCACCAAAGGACTCCACACG+AGG + chr1_2:8511172-8511191 None:intergenic 60.0%
CCTCGTGTGGAGTCCTTTGG+TGG - chr1_2:8511169-8511188 Msa0053960:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 8507174 8511665 8507174 ID=Msa0053960;Name=Msa0053960
chr1_2 mRNA 8507174 8511665 8507174 ID=Msa0053960-mRNA-1;Parent=Msa0053960;Name=Msa0053960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=92|0.77|0.9|0.9|1|1|10|193|415
chr1_2 exon 8507174 8507501 8507174 ID=Msa0053960-mRNA-1:exon:3097;Parent=Msa0053960-mRNA-1
chr1_2 exon 8507596 8507727 8507596 ID=Msa0053960-mRNA-1:exon:3096;Parent=Msa0053960-mRNA-1
chr1_2 exon 8507823 8507912 8507823 ID=Msa0053960-mRNA-1:exon:3095;Parent=Msa0053960-mRNA-1
chr1_2 exon 8508454 8508507 8508454 ID=Msa0053960-mRNA-1:exon:3094;Parent=Msa0053960-mRNA-1
chr1_2 exon 8508601 8508716 8508601 ID=Msa0053960-mRNA-1:exon:3093;Parent=Msa0053960-mRNA-1
chr1_2 exon 8509447 8509522 8509447 ID=Msa0053960-mRNA-1:exon:3092;Parent=Msa0053960-mRNA-1
chr1_2 exon 8510309 8510371 8510309 ID=Msa0053960-mRNA-1:exon:3091;Parent=Msa0053960-mRNA-1
chr1_2 exon 8510624 8510681 8510624 ID=Msa0053960-mRNA-1:exon:3090;Parent=Msa0053960-mRNA-1
chr1_2 exon 8510931 8511134 8510931 ID=Msa0053960-mRNA-1:exon:3089;Parent=Msa0053960-mRNA-1
chr1_2 exon 8511254 8511665 8511254 ID=Msa0053960-mRNA-1:exon:3088;Parent=Msa0053960-mRNA-1
chr1_2 five_prime_UTR 8511574 8511665 8511574 ID=Msa0053960-mRNA-1:five_prime_utr;Parent=Msa0053960-mRNA-1
chr1_2 CDS 8511254 8511573 8511254 ID=Msa0053960-mRNA-1:cds;Parent=Msa0053960-mRNA-1
chr1_2 CDS 8510931 8511134 8510931 ID=Msa0053960-mRNA-1:cds;Parent=Msa0053960-mRNA-1
chr1_2 CDS 8510624 8510681 8510624 ID=Msa0053960-mRNA-1:cds;Parent=Msa0053960-mRNA-1
chr1_2 CDS 8510309 8510371 8510309 ID=Msa0053960-mRNA-1:cds;Parent=Msa0053960-mRNA-1
chr1_2 CDS 8509447 8509522 8509447 ID=Msa0053960-mRNA-1:cds;Parent=Msa0053960-mRNA-1
chr1_2 CDS 8508601 8508716 8508601 ID=Msa0053960-mRNA-1:cds;Parent=Msa0053960-mRNA-1
chr1_2 CDS 8508454 8508507 8508454 ID=Msa0053960-mRNA-1:cds;Parent=Msa0053960-mRNA-1
chr1_2 CDS 8507823 8507912 8507823 ID=Msa0053960-mRNA-1:cds;Parent=Msa0053960-mRNA-1
chr1_2 CDS 8507596 8507727 8507596 ID=Msa0053960-mRNA-1:cds;Parent=Msa0053960-mRNA-1
chr1_2 CDS 8507367 8507501 8507367 ID=Msa0053960-mRNA-1:cds;Parent=Msa0053960-mRNA-1
chr1_2 three_prime_UTR 8507174 8507366 8507174 ID=Msa0053960-mRNA-1:three_prime_utr;Parent=Msa0053960-mRNA-1
Gene Sequence

>Msa0053960

ATGGAAATGGCAGCCTCAAATTTCAAATTCACTCTCCCTTTGAAGAATACTAGGTACTTGTCTATGTTTCATGGATTGAAACACCAACACTCAAATTCATTCAACAAATGTTTCAAACTTCAATCTTTGTCTACTAGAATAGTGTCAGCTACTACAAACATAGCTTCTGATATGTATGTTGGAAGAAACAATAGTAACAAGATTTACACAAACTTGAATTCTTGTCTTGTGATTCCACCACCTACTTCCACCAAACCAAGAGCTATAATCAAATTCATTGGTGGTGCTTTCGTTGGTGCTATTCCTCAACTTACTTATGGATATCTTATAGAGTTATTGGCTAAGGAAGGTTTTGTTGTTGTGGTGGTGCCTTATAATGTGACATTTGATCATTCTCTAGCTGCTAAACAAGTCTATGACAAGTTTCATTCTTGTTTGGATACACTGCTGACATCTGGGTTGCCTCAATCCAATTTGTCACCTGCTCAGCTTGGAGGTCTTCCTATTTTCTCTGTTGGTCATAGCAATGGTGCACTTCTTCAAGTACTCACAGGAAGCTTATTTTCTGAGAAACTACCTAAGGCTAATGCTGTAATCGCTTACAACAACAGACCAGCAACAGAGGCGGTTCCTTACTTTGAGCAGCTAGGTCCTGCTGTCAGCCAGATGATGCCAATAGTGGAAGCAAATCCAATTTACTCGATAGCTAGAAATGCACCAGGAGATGCATGGAAGATGGTTCTTGATTCTGTTGGATCAATTCTGCAGGAAAGCGAGAAGGAAGTTCTGAATTCATTAACTAAATTTGTTGATCAGCTGCCTTTGGTAATGAATGAGGGAAAACCTTGGAGGTCAAGTATTGCTGTTGGTTTTTTCTATAGGCGAATCTTAGTTACACAAGGAGTCTCAGAGTTCAAGCCAACACCATCTGAAAATCGTGATTGCTTTAAAAGTTCGTACAATGTCAAACACACATTATTGGTGCAATTCAATATCGACACAATAGACGAAACAAATATTCTTGAAGAAACACTCAAGCCTCGTGTGGAGTCCTTTGGTGGGACAATAGAAAAAGTAGGATTGAGTGGTAACCACATCACACCATGCATCCAGGAACCAAGATGGCAAGTAGGTAAGTTGTATACTCCAGCAGATGCTGTTGCTCAAAGGCTTAAATCTTTTTCTTTGAGTGATACTAGAATCCTTGCCAGAACCATTAGTGACTGGTTCCAACGTTTTGAGGATTGA

Protein sequence

>Msa0053960

MEMAASNFKFTLPLKNTRYLSMFHGLKHQHSNSFNKCFKLQSLSTRIVSATTNIASDMYVGRNNSNKIYTNLNSCLVIPPPTSTKPRAIIKFIGGAFVGAIPQLTYGYLIELLAKEGFVVVVVPYNVTFDHSLAAKQVYDKFHSCLDTLLTSGLPQSNLSPAQLGGLPIFSVGHSNGALLQVLTGSLFSEKLPKANAVIAYNNRPATEAVPYFEQLGPAVSQMMPIVEANPIYSIARNAPGDAWKMVLDSVGSILQESEKEVLNSLTKFVDQLPLVMNEGKPWRSSIAVGFFYRRILVTQGVSEFKPTPSENRDCFKSSYNVKHTLLVQFNIDTIDETNILEETLKPRVESFGGTIEKVGLSGNHITPCIQEPRWQVGKLYTPADAVAQRLKSFSLSDTRILARTISDWFQRFED*