Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135070 | XP_013469848.1 | 93.929 | 280 | 9 | 3 | 1 | 277 | 1 | 275 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135070 | sp|Q43072|HIS7_PEA | 75.362 | 276 | 57 | 8 | 12 | 277 | 7 | 281 | 1.28e-138 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135070 | A0A072VQG6 | 93.929 | 280 | 9 | 3 | 1 | 277 | 1 | 275 | 0.0 | 519 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009530 | Msa0135070 | 0.801105 | 1.053469e-48 | -8.615850e-47 |
| Msa0011060 | Msa0135070 | 0.801191 | 1.011730e-48 | -8.615850e-47 |
| Msa0011100 | Msa0135070 | 0.818757 | 1.659446e-52 | -8.615850e-47 |
| Msa0024500 | Msa0135070 | 0.806777 | 6.977495e-50 | -8.615850e-47 |
| Msa0028900 | Msa0135070 | 0.809192 | 2.136289e-50 | -8.615850e-47 |
| Msa0029280 | Msa0135070 | 0.804588 | 2.010342e-49 | -8.615850e-47 |
| Msa0030760 | Msa0135070 | 0.842775 | 2.104473e-58 | -8.615850e-47 |
| Msa0032990 | Msa0135070 | 0.846054 | 2.763343e-59 | -8.615850e-47 |
| Msa0034100 | Msa0135070 | 0.820709 | 5.944196e-53 | -8.615850e-47 |
| Msa0040420 | Msa0135070 | 0.920677 | 9.451864e-88 | -8.615850e-47 |
| Msa0072390 | Msa0135070 | 0.821653 | 3.600262e-53 | -8.615850e-47 |
| Msa0078160 | Msa0135070 | 0.809734 | 1.634379e-50 | -8.615850e-47 |
| Msa0078170 | Msa0135070 | 0.800817 | 1.206063e-48 | -8.615850e-47 |
| Msa0081790 | Msa0135070 | 0.803366 | 3.607763e-49 | -8.615850e-47 |
| Msa0084900 | Msa0135070 | 0.827353 | 1.639501e-54 | -8.615850e-47 |
| Msa0086620 | Msa0135070 | 0.813547 | 2.421564e-51 | -8.615850e-47 |
| Msa0088670 | Msa0135070 | 0.813403 | 2.605791e-51 | -8.615850e-47 |
| Msa0089470 | Msa0135070 | 0.800968 | 1.123549e-48 | -8.615850e-47 |
| Msa0094900 | Msa0135070 | 0.813151 | 2.959973e-51 | -8.615850e-47 |
| Msa0118250 | Msa0135070 | 0.811026 | 8.601406e-51 | -8.615850e-47 |
| Msa0128110 | Msa0135070 | 0.825968 | 3.508997e-54 | -8.615850e-47 |
| Msa0135070 | Msa0135470 | 0.817575 | 3.070997e-52 | -8.615850e-47 |
| Msa0135070 | Msa0138340 | 0.811214 | 7.831368e-51 | -8.615850e-47 |
| Msa0135070 | Msa0141760 | 0.809380 | 1.947242e-50 | -8.615850e-47 |
| Msa0135070 | Msa0147960 | 0.809612 | 1.736464e-50 | -8.615850e-47 |
| Msa0135070 | Msa0163960 | 0.815249 | 1.018360e-51 | -8.615850e-47 |
| Msa0135070 | Msa0164580 | 0.803589 | 3.243723e-49 | -8.615850e-47 |
| Msa0135070 | Msa0164630 | 0.802589 | 5.223153e-49 | -8.615850e-47 |
| Msa0135070 | Msa0169320 | 0.826088 | 3.286602e-54 | -8.615850e-47 |
| Msa0135070 | Msa0170730 | 0.809888 | 1.514096e-50 | -8.615850e-47 |
| Msa0135070 | Msa0180540 | 0.814334 | 1.624680e-51 | -8.615850e-47 |
| Msa0135070 | Msa0184850 | 0.802312 | 5.956784e-49 | -8.615850e-47 |
| Msa0135070 | Msa0194750 | 0.831040 | 2.090946e-55 | -8.615850e-47 |
| Msa0135070 | Msa0208040 | 0.812306 | 4.530221e-51 | -8.615850e-47 |
| Msa0135070 | Msa0208710 | 0.854907 | 9.003470e-62 | -8.615850e-47 |
| Msa0135070 | Msa0209370 | 0.830953 | 2.196309e-55 | -8.615850e-47 |
| Msa0135070 | Msa0209590 | 0.850152 | 2.042426e-60 | -8.615850e-47 |
| Msa0135070 | Msa0223760 | -0.804241 | 2.373850e-49 | -8.615850e-47 |
| Msa0135070 | Msa0225070 | 0.801808 | 7.560195e-49 | -8.615850e-47 |
| Msa0135070 | Msa0227970 | 0.844655 | 6.607028e-59 | -8.615850e-47 |
| Msa0135070 | Msa0236690 | 0.829889 | 3.998433e-55 | -8.615850e-47 |
| Msa0135070 | Msa0265660 | 0.809775 | 1.601299e-50 | -8.615850e-47 |
| Msa0135070 | Msa0269660 | 0.840327 | 9.294307e-58 | -8.615850e-47 |
| Msa0135070 | Msa0304060 | 0.804901 | 1.728965e-49 | -8.615850e-47 |
| Msa0135070 | Msa0304350 | 0.811275 | 7.593770e-51 | -8.615850e-47 |
| Msa0135070 | Msa0305910 | 0.812210 | 4.754987e-51 | -8.615850e-47 |
| Msa0135070 | Msa0340830 | 0.813484 | 2.500683e-51 | -8.615850e-47 |
| Msa0135070 | Msa0340870 | 0.820965 | 5.188985e-53 | -8.615850e-47 |
| Msa0135070 | Msa0367590 | 0.804396 | 2.204177e-49 | -8.615850e-47 |
| Msa0135070 | Msa0367600 | 0.822112 | 2.819919e-53 | -8.615850e-47 |
| Msa0135070 | Msa0382060 | 0.807513 | 4.871769e-50 | -8.615850e-47 |
| Msa0135070 | Msa0385850 | 0.815286 | 9.995236e-52 | -8.615850e-47 |
| Msa0135070 | Msa0389890 | 0.829871 | 4.038183e-55 | -8.615850e-47 |
| Msa0135070 | Msa0390350 | 0.810427 | 1.159218e-50 | -8.615850e-47 |
| Msa0135070 | Msa0415210 | 0.834375 | 3.108175e-56 | -8.615850e-47 |
| Msa0135070 | Msa0431560 | 0.820574 | 6.383378e-53 | -8.615850e-47 |
| Msa0135070 | Msa0433890 | 0.804290 | 2.318596e-49 | -8.615850e-47 |
| Msa0135070 | Msa0475700 | 0.819457 | 1.150098e-52 | -8.615850e-47 |
| Msa0135070 | Msa0527210 | 0.808301 | 3.313295e-50 | -8.615850e-47 |
| Msa0135070 | Msa0538050 | 0.801829 | 7.484053e-49 | -8.615850e-47 |
| Msa0135070 | Msa0539400 | 0.838439 | 2.873689e-57 | -8.615850e-47 |
| Msa0135070 | Msa0544710 | 0.819444 | 1.157591e-52 | -8.615850e-47 |
| Msa0135070 | Msa0554700 | 0.819286 | 1.258119e-52 | -8.615850e-47 |
| Msa0135070 | Msa0561420 | 0.813196 | 2.892699e-51 | -8.615850e-47 |
| Msa0135070 | Msa0565530 | 0.844270 | 8.390629e-59 | -8.615850e-47 |
| Msa0135070 | Msa0585720 | 0.800678 | 1.287454e-48 | -8.615850e-47 |
| Msa0135070 | Msa0587070 | 0.805719 | 1.165434e-49 | -8.615850e-47 |
| Msa0135070 | Msa0600280 | 0.802955 | 4.388661e-49 | -8.615850e-47 |
| Msa0135070 | Msa0603740 | 0.813763 | 2.171174e-51 | -8.615850e-47 |
| Msa0135070 | Msa0608940 | 0.813199 | 2.889018e-51 | -8.615850e-47 |
| Msa0135070 | Msa0615430 | 0.802197 | 6.288441e-49 | -8.615850e-47 |
| Msa0135070 | Msa0618260 | 0.803735 | 3.025456e-49 | -8.615850e-47 |
| Msa0135070 | Msa0623480 | 0.806098 | 9.701776e-50 | -8.615850e-47 |
| Msa0135070 | Msa0625900 | 0.804146 | 2.485287e-49 | -8.615850e-47 |
| Msa0135070 | Msa0632040 | 0.835302 | 1.816075e-56 | -8.615850e-47 |
| Msa0135070 | Msa0636840 | 0.807372 | 5.219248e-50 | -8.615850e-47 |
| Msa0135070 | Msa0646030 | 0.805031 | 1.624291e-49 | -8.615850e-47 |
| Msa0135070 | Msa0649530 | 0.802763 | 4.808318e-49 | -8.615850e-47 |
| Msa0135070 | Msa0653370 | 0.813268 | 2.789606e-51 | -8.615850e-47 |
| Msa0135070 | Msa0654880 | 0.807437 | 5.058086e-50 | -8.615850e-47 |
| Msa0135070 | Msa0660070 | 0.822618 | 2.151140e-53 | -8.615850e-47 |
| Msa0135070 | Msa0663690 | 0.801857 | 7.386641e-49 | -8.615850e-47 |
| Msa0135070 | Msa0669160 | 0.807945 | 3.943654e-50 | -8.615850e-47 |
| Msa0135070 | Msa0674680 | 0.803506 | 3.374942e-49 | -8.615850e-47 |
| Msa0135070 | Msa0691740 | 0.810977 | 8.813700e-51 | -8.615850e-47 |
| Msa0135070 | Msa0695800 | 0.861359 | 1.084470e-63 | -8.615850e-47 |
| Msa0135070 | Msa0698480 | 0.806588 | 7.648823e-50 | -8.615850e-47 |
| Msa0135070 | Msa0698650 | 0.804796 | 1.819242e-49 | -8.615850e-47 |
| Msa0135070 | Msa0703150 | 0.814757 | 1.309702e-51 | -8.615850e-47 |
| Msa0135070 | Msa0706130 | 0.807954 | 3.926659e-50 | -8.615850e-47 |
| Msa0135070 | Msa0707270 | 0.800789 | 1.222343e-48 | -8.615850e-47 |
| Msa0135070 | Msa0730250 | 0.809699 | 1.663297e-50 | -8.615850e-47 |
| Msa0135070 | Msa0733240 | 0.833859 | 4.186812e-56 | -8.615850e-47 |
| Msa0135070 | Msa0741170 | -0.816318 | 5.881328e-52 | -8.615850e-47 |
| Msa0135070 | Msa0749160 | 0.817009 | 4.117266e-52 | -8.615850e-47 |
| Msa0135070 | Msa0751540 | 0.800494 | 1.403531e-48 | -8.615850e-47 |
| Msa0135070 | Msa0755500 | 0.807343 | 5.293579e-50 | -8.615850e-47 |
| Msa0135070 | Msa0774560 | 0.854233 | 1.410953e-61 | -8.615850e-47 |
| Msa0135070 | Msa0797010 | 0.820288 | 7.424047e-53 | -8.615850e-47 |
| Msa0135070 | Msa0803220 | 0.801032 | 1.090097e-48 | -8.615850e-47 |
| Msa0135070 | Msa0834830 | 0.807488 | 4.932097e-50 | -8.615850e-47 |
| Msa0135070 | Msa0838100 | 0.815991 | 6.961219e-52 | -8.615850e-47 |
| Msa0135070 | Msa0849290 | 0.841034 | 6.068425e-58 | -8.615850e-47 |
| Msa0135070 | Msa0852090 | 0.803852 | 2.860151e-49 | -8.615850e-47 |
| Msa0135070 | Msa0876270 | 0.824459 | 7.978459e-54 | -8.615850e-47 |
| Msa0135070 | Msa0884840 | 0.806913 | 6.528449e-50 | -8.615850e-47 |
| Msa0135070 | Msa0917630 | 0.837106 | 6.322104e-57 | -8.615850e-47 |
| Msa0135070 | Msa0967900 | 0.824700 | 7.004227e-54 | -8.615850e-47 |
| Msa0135070 | Msa0968970 | 0.824598 | 7.401269e-54 | -8.615850e-47 |
| Msa0135070 | Msa1033460 | 0.802283 | 6.038319e-49 | -8.615850e-47 |
| Msa0135070 | Msa1056590 | 0.805454 | 1.324718e-49 | -8.615850e-47 |
| Msa0135070 | Msa1071380 | 0.802757 | 4.822152e-49 | -8.615850e-47 |
| Msa0135070 | Msa1078600 | 0.806842 | 6.758634e-50 | -8.615850e-47 |
| Msa0135070 | Msa1078770 | 0.801352 | 9.377651e-49 | -8.615850e-47 |
| Msa0135070 | Msa1085600 | 0.814374 | 1.591903e-51 | -8.615850e-47 |
| Msa0135070 | Msa1101300 | 0.803439 | 3.483979e-49 | -8.615850e-47 |
| Msa0135070 | Msa1107950 | 0.801355 | 9.364624e-49 | -8.615850e-47 |
| Msa0135070 | Msa1111850 | 0.813007 | 3.182329e-51 | -8.615850e-47 |
| Msa0135070 | Msa1143820 | 0.819433 | 1.164500e-52 | -8.615850e-47 |
| Msa0135070 | Msa1143860 | 0.814882 | 1.228499e-51 | -8.615850e-47 |
| Msa0135070 | Msa1154250 | 0.810117 | 1.352066e-50 | -8.615850e-47 |
| Msa0135070 | Msa1179410 | 0.830583 | 2.706541e-55 | -8.615850e-47 |
| Msa0135070 | Msa1185030 | 0.837855 | 4.062138e-57 | -8.615850e-47 |
| Msa0135070 | Msa1186010 | 0.824088 | 9.755269e-54 | -8.615850e-47 |
| Msa0135070 | Msa1225140 | 0.817154 | 3.820440e-52 | -8.615850e-47 |
| Msa0135070 | Msa1225240 | 0.803303 | 3.717755e-49 | -8.615850e-47 |
| Msa0135070 | Msa1228600 | 0.812658 | 3.794467e-51 | -8.615850e-47 |
| Msa0135070 | Msa1230190 | 0.810299 | 1.234877e-50 | -8.615850e-47 |
| Msa0135070 | Msa1240240 | 0.836383 | 9.665833e-57 | -8.615850e-47 |
| Msa0135070 | Msa1258200 | 0.818032 | 2.421959e-52 | -8.615850e-47 |
| Msa0135070 | Msa1260520 | 0.808705 | 2.716239e-50 | -8.615850e-47 |
| Msa0135070 | Msa1272770 | 0.813995 | 1.930282e-51 | -8.615850e-47 |
| Msa0135070 | Msa1286470 | 0.801777 | 7.673560e-49 | -8.615850e-47 |
| Msa0135070 | Msa1286950 | 0.831617 | 1.508205e-55 | -8.615850e-47 |
| Msa0135070 | Msa1319230 | 0.833194 | 6.133561e-56 | -8.615850e-47 |
| Msa0135070 | Msa1327690 | 0.822884 | 1.865564e-53 | -8.615850e-47 |
| Msa0135070 | Msa1346340 | 0.826871 | 2.138097e-54 | -8.615850e-47 |
| Msa0135070 | Msa1348630 | 0.802793 | 4.739293e-49 | -8.615850e-47 |
| Msa0135070 | Msa1349490 | 0.840360 | 9.112947e-58 | -8.615850e-47 |
| Msa0135070 | Msa1350580 | 0.801374 | 9.278146e-49 | -8.615850e-47 |
| Msa0135070 | Msa1352600 | 0.806462 | 8.131430e-50 | -8.615850e-47 |
| Msa0135070 | Msa1363560 | 0.827012 | 1.978363e-54 | -8.615850e-47 |
| Msa0135070 | Msa1368150 | 0.800295 | 1.541467e-48 | -8.615850e-47 |
| Msa0135070 | Msa1369220 | 0.832980 | 6.936202e-56 | -8.615850e-47 |
| Msa0135070 | Msa1371540 | 0.802445 | 5.590530e-49 | -8.615850e-47 |
| Msa0135070 | Msa1376010 | 0.816091 | 6.611982e-52 | -8.615850e-47 |
| Msa0135070 | Msa1381720 | 0.802061 | 6.706886e-49 | -8.615850e-47 |
| Msa0135070 | Msa1382100 | 0.838902 | 2.182549e-57 | -8.615850e-47 |
| Msa0135070 | Msa1393550 | 0.802535 | 5.358870e-49 | -8.615850e-47 |
| Msa0135070 | Msa1412830 | 0.819360 | 1.210016e-52 | -8.615850e-47 |
| Msa0135070 | Msa1418840 | 0.812332 | 4.472685e-51 | -8.615850e-47 |
| Msa0135070 | Msa1426310 | 0.803693 | 3.085965e-49 | -8.615850e-47 |
| Msa0135070 | Msa1432250 | 0.805172 | 1.517568e-49 | -8.615850e-47 |
| Msa0135070 | Msa1436660 | 0.818166 | 2.259353e-52 | -8.615850e-47 |
| Msa0135070 | Msa1450850 | 0.815449 | 9.191399e-52 | -8.615850e-47 |
| Msa0135070 | Msa1456620 | 0.834140 | 3.560981e-56 | -8.615850e-47 |
| Msa0135070 | Msa1462210 | 0.809148 | 2.183262e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135070 | MtrunA17_Chr1g0205441 | 93.929 | 280 | 9 | 3 | 1 | 277 | 20 | 294 | 0.0 | 518 |
| Msa0135070 | MtrunA17_Chr1g0185171 | 47.917 | 96 | 41 | 3 | 100 | 186 | 1 | 96 | 5.32e-18 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135070 | AT4G14910.1 | 87.440 | 207 | 25 | 1 | 71 | 277 | 67 | 272 | 7.68e-130 | 369 |
| Msa0135070 | AT3G22425.2 | 89.394 | 198 | 21 | 0 | 80 | 277 | 73 | 270 | 1.74e-129 | 368 |
| Msa0135070 | AT4G14910.3 | 84.390 | 205 | 31 | 1 | 71 | 275 | 67 | 270 | 7.44e-124 | 355 |
| Msa0135070 | AT4G14910.2 | 86.869 | 198 | 25 | 1 | 71 | 268 | 67 | 263 | 4.18e-123 | 353 |
| Msa0135070 | AT3G22425.1 | 87.970 | 133 | 16 | 0 | 80 | 212 | 73 | 205 | 3.01e-83 | 251 |
Find 106 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATCAGTTAAAATTAATT+TGG | 0.145809 | 1_3:+66618209 | Msa0135070:CDS |
| TTTCACATTCACAATCTTAA+TGG | 0.174805 | 1_3:+66617827 | Msa0135070:exon |
| CCCACATCTTTGTTCAGTTC+AGG | 0.287795 | 1_3:+66622427 | Msa0135070:three_prime_UTR |
| AAAATTAATTTGGATGGAAA+TGG | 0.293645 | 1_3:+66618219 | Msa0135070:CDS |
| GGGGAGAAAATCAGCATATA+TGG | 0.301868 | 1_3:-66622407 | None:intergenic |
| GAACATCTCCGCCGCTGCTT+TGG | 0.321234 | 1_3:+66618013 | Msa0135070:CDS |
| GAAGATGTCGCTCTTGCTAT+TGG | 0.325704 | 1_3:+66619008 | Msa0135070:CDS |
| AAATTAATTTGGATGGAAAT+GGG | 0.326506 | 1_3:+66618220 | Msa0135070:CDS |
| GTTAGCCTTCTTTGTACATA+AGG | 0.329421 | 1_3:+66622279 | Msa0135070:three_prime_UTR |
| GACCTTGTCCAGGATTTATC+TGG | 0.333580 | 1_3:+66619853 | Msa0135070:intron |
| ATCATTTCAGGTGCTAGAAT+TGG | 0.340324 | 1_3:+66618156 | Msa0135070:intron |
| CAGGCTTTGCTGCAGGCTCT+TGG | 0.348810 | 1_3:+66619352 | Msa0135070:intron |
| TTATGAGCCACTGCCATCTA+AGG | 0.349017 | 1_3:-66622163 | None:intergenic |
| GGGGTTGCTGATAATAGTTC+TGG | 0.350949 | 1_3:+66618240 | Msa0135070:CDS |
| GAAGTAAAACCTGAGTCAAT+TGG | 0.354938 | 1_3:-66618068 | None:intergenic |
| CCTCAAATATGCAGTTCAAA+AGG | 0.364048 | 1_3:+66622028 | Msa0135070:intron |
| AACTGATACATTAGTTTCCT+TGG | 0.365756 | 1_3:-66618196 | None:intergenic |
| CATCTCCGCCGCTGCTTTGG+TGG | 0.367364 | 1_3:+66618016 | Msa0135070:CDS |
| CAGTCATTGGTGAACACATC+TGG | 0.380574 | 1_3:+66620166 | Msa0135070:CDS |
| TTTGAGTGCAACTGAGTTTG+AGG | 0.393186 | 1_3:-66617861 | None:intergenic |
| AATATGATGGGAATTTGTTC+CGG | 0.398429 | 1_3:-66620445 | None:intergenic |
| CTCAAATATGCAGTTCAAAA+GGG | 0.398511 | 1_3:+66622029 | Msa0135070:intron |
| TTCCGTCTCTGAAATCATCT+AGG | 0.399239 | 1_3:+66617895 | Msa0135070:CDS |
| CTTCTTTGTACATAAGGATT+CGG | 0.403023 | 1_3:+66622285 | Msa0135070:three_prime_UTR |
| CTCATAAATGCCAGTCTTGT+GGG | 0.405733 | 1_3:+66622179 | Msa0135070:three_prime_UTR |
| ACATACCTACTCAGAGGGTT+GGG | 0.407867 | 1_3:+66619902 | Msa0135070:CDS |
| AGCCCTAGCAAATGCTTTGA+AGG | 0.411264 | 1_3:-66620478 | None:intergenic |
| AAAAGTGGGCATGTTGGGTT+GGG | 0.421518 | 1_3:-66617942 | None:intergenic |
| TCATCTCCAGGCTTTGCTGC+AGG | 0.425450 | 1_3:+66619345 | Msa0135070:intron |
| TCAGTTAAAATTAATTTGGA+TGG | 0.425680 | 1_3:+66618213 | Msa0135070:CDS |
| TGCTGCAGGCTCTTGGTGAT+AGG | 0.428704 | 1_3:+66619359 | Msa0135070:CDS |
| CTTCAGCTGCTATCCATGAT+TGG | 0.438754 | 1_3:+66622073 | Msa0135070:three_prime_UTR |
| ATCAAGCATATGATCAAGAA+AGG | 0.443469 | 1_3:-66618268 | None:intergenic |
| TCCGCCGCTGCTTTGGTGGA+TGG | 0.445471 | 1_3:+66618020 | Msa0135070:CDS |
| GATGATTTCAGAGACGGAAA+TGG | 0.447710 | 1_3:-66617891 | None:intergenic |
| AGCATTAGTTCACGTTTCTC+TGG | 0.449545 | 1_3:+66619426 | Msa0135070:CDS |
| AAGTAAAACCTGAGTCAATT+GGG | 0.453277 | 1_3:-66618067 | None:intergenic |
| GTGATAGGAAGGGTATTAAC+CGG | 0.453455 | 1_3:+66619374 | Msa0135070:CDS |
| AGGAAGGGTATTAACCGGTT+TGG | 0.454615 | 1_3:+66619379 | Msa0135070:CDS |
| AGCAGCGGCGGAGATGTTCC+TGG | 0.459063 | 1_3:-66618009 | None:intergenic |
| ATTCAGTAAGGTGAGATTGC+GGG | 0.460720 | 1_3:-66617982 | None:intergenic |
| CTAGAATTGGAGAGGTGAAA+AGG | 0.463775 | 1_3:+66618169 | Msa0135070:CDS |
| CAACCTTCAAAGCATTTGCT+AGG | 0.466744 | 1_3:+66620475 | Msa0135070:CDS |
| CGGGAACAGATGCAAATTGT+TGG | 0.468453 | 1_3:-66617770 | None:intergenic |
| GCATCGAAATGGTCCTTAGA+TGG | 0.470349 | 1_3:+66622150 | Msa0135070:three_prime_UTR |
| TTATCTGGCCGACCGCATCT+AGG | 0.476067 | 1_3:+66619868 | Msa0135070:CDS |
| ATCAAGCATATGCATCGAAA+TGG | 0.481469 | 1_3:+66622139 | Msa0135070:three_prime_UTR |
| AATTAATTTGGATGGAAATG+GGG | 0.492287 | 1_3:+66618221 | Msa0135070:CDS |
| TCCGTCTCTGAAATCATCTA+GGG | 0.497267 | 1_3:+66617896 | Msa0135070:CDS |
| CGAATCCTTATGTACAAAGA+AGG | 0.502194 | 1_3:-66622284 | None:intergenic |
| CAAATGCTGACCCACAAGAC+TGG | 0.502288 | 1_3:-66622189 | None:intergenic |
| AGAGAGTGAAGTAGTTTGTC+GGG | 0.513265 | 1_3:-66617789 | None:intergenic |
| AACATACCTACTCAGAGGGT+TGG | 0.513836 | 1_3:+66619901 | Msa0135070:CDS |
| AAGAGAGTGAAGTAGTTTGT+CGG | 0.521839 | 1_3:-66617790 | None:intergenic |
| GCTCATAAATGCCAGTCTTG+TGG | 0.526825 | 1_3:+66622178 | Msa0135070:three_prime_UTR |
| AAATTCCCATCATATTATTG+AGG | 0.526922 | 1_3:+66620452 | Msa0135070:CDS |
| GACGTACATGTAAAGGCTAC+AGG | 0.527407 | 1_3:+66618954 | Msa0135070:CDS |
| TCAACTTTCCCAATTGACTC+AGG | 0.527990 | 1_3:+66618059 | Msa0135070:CDS |
| GCAGGCTCTTGGTGATAGGA+AGG | 0.531782 | 1_3:+66619363 | Msa0135070:CDS |
| AGGTTGCCTCAATAATATGA+TGG | 0.535692 | 1_3:-66620458 | None:intergenic |
| GCTGCTTTGGTGGATGGCAA+TGG | 0.538954 | 1_3:+66618026 | Msa0135070:CDS |
| CGACATCTTCATTTGTGTGA+TGG | 0.542341 | 1_3:-66618995 | None:intergenic |
| GGGAGAAAATCAGCATATAT+GGG | 0.547685 | 1_3:-66622406 | None:intergenic |
| TTTCAGCAACTTGCTTCACA+TGG | 0.550479 | 1_3:+66618924 | Msa0135070:intron |
| TGAACTAATGCTTCATCAAG+TGG | 0.551680 | 1_3:-66619415 | None:intergenic |
| GCCATCCACCAAAGCAGCGG+CGG | 0.554726 | 1_3:-66618021 | None:intergenic |
| GAGCAGAGAAGTTACCAAAC+CGG | 0.559283 | 1_3:-66619393 | None:intergenic |
| ACTGTTTGACGTACATGTAA+AGG | 0.559891 | 1_3:+66618947 | Msa0135070:CDS |
| ACCCTAGATGATTTCAGAGA+CGG | 0.560120 | 1_3:-66617897 | None:intergenic |
| AACCTTCAAAGCATTTGCTA+GGG | 0.561828 | 1_3:+66620476 | Msa0135070:CDS |
| CAGATGTGTTCACCAATGAC+TGG | 0.561881 | 1_3:-66620165 | None:intergenic |
| TCAAGCATATGATCAAGAAA+GGG | 0.563364 | 1_3:-66618267 | None:intergenic |
| GGTTGCCTCAATAATATGAT+GGG | 0.565515 | 1_3:-66620457 | None:intergenic |
| TAGAATTGGAGAGGTGAAAA+GGG | 0.571453 | 1_3:+66618170 | Msa0135070:CDS |
| GCAGCGGCGGAGATGTTCCT+GGG | 0.571795 | 1_3:-66618008 | None:intergenic |
| TTGATGCCTCGATCCAATCA+TGG | 0.578150 | 1_3:-66622086 | None:intergenic |
| CAATGTTGTTTACAGAGACT+AGG | 0.580243 | 1_3:-66622221 | None:intergenic |
| TCAAATATGCAGTTCAAAAG+GGG | 0.580346 | 1_3:+66622030 | Msa0135070:intron |
| AAATGGTCCTTAGATGGCAG+TGG | 0.590189 | 1_3:+66622156 | Msa0135070:three_prime_UTR |
| TCAGTACCTGTCGAATGTGA+AGG | 0.592945 | 1_3:-66620195 | None:intergenic |
| TAAACCTTGGTATTGTTCCA+CGG | 0.594113 | 1_3:-66620533 | None:intergenic |
| CATACCTACTCAGAGGGTTG+GGG | 0.594176 | 1_3:+66619903 | Msa0135070:CDS |
| ATTGCCATCCACCAAAGCAG+CGG | 0.599331 | 1_3:-66618024 | None:intergenic |
| CAGTACCTGTCGAATGTGAA+GGG | 0.609054 | 1_3:-66620194 | None:intergenic |
| TATGACCCTTCACATTCGAC+AGG | 0.612406 | 1_3:+66620189 | Msa0135070:CDS |
| CTGTCAAACTGATTCTCATG+TGG | 0.613701 | 1_3:-66622309 | None:intergenic |
| TTCAGGTGCTAGAATTGGAG+AGG | 0.615450 | 1_3:+66618161 | Msa0135070:intron |
| TCACCTTACTGAATCCTCCC+AGG | 0.617206 | 1_3:+66617991 | Msa0135070:CDS |
| GATTCAGTAAGGTGAGATTG+CGG | 0.620727 | 1_3:-66617983 | None:intergenic |
| GGTTGGGGCATACGACACTC+AGG | 0.623135 | 1_3:+66619918 | Msa0135070:CDS |
| TATGCCCCAACCCTCTGAGT+AGG | 0.625898 | 1_3:-66619907 | None:intergenic |
| CAGGCTCTTGGTGATAGGAA+GGG | 0.631297 | 1_3:+66619364 | Msa0135070:CDS |
| GTTCCTGGGAGGATTCAGTA+AGG | 0.638632 | 1_3:-66617994 | None:intergenic |
| CTTAAACATACCTACTCAGA+GGG | 0.645466 | 1_3:+66619897 | Msa0135070:CDS |
| TGTCGCTCTTGCTATTGGAA+CGG | 0.647644 | 1_3:+66619013 | Msa0135070:CDS |
| CCTGAACTGAACAAAGATGT+GGG | 0.648372 | 1_3:-66622427 | None:intergenic |
| TCCTGAACTGAACAAAGATG+TGG | 0.655089 | 1_3:-66622428 | None:intergenic |
| TGCTATCCATGATTGGATCG+AGG | 0.661245 | 1_3:+66622080 | Msa0135070:three_prime_UTR |
| AGTCATAACCTAGATGCGGT+CGG | 0.664165 | 1_3:-66619876 | None:intergenic |
| GAGTATGATACACGTCGCCG+TGG | 0.666793 | 1_3:+66620516 | Msa0135070:CDS |
| CTGAACTGAACAAAGATGTG+GGG | 0.687202 | 1_3:-66622426 | None:intergenic |
| ACTTAAACATACCTACTCAG+AGG | 0.687734 | 1_3:+66619896 | Msa0135070:CDS |
| TTTAAGTCATAACCTAGATG+CGG | 0.688778 | 1_3:-66619880 | None:intergenic |
| AGAGGTGAAAAGGGTCACCA+AGG | 0.711904 | 1_3:+66618179 | Msa0135070:CDS |
| GCGGCGGAGATGTTCCTGGG+AGG | 0.718744 | 1_3:-66618005 | None:intergenic |
| GTCGCCGTGGAACAATACCA+AGG | 0.723313 | 1_3:+66620529 | Msa0135070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTAAAATTGTTCAA+TGG | + | chr1_3:66618860-66618879 | Msa0135070:intron | 10.0% |
| !! | AAATATGTTAAATCTATAAA+TGG | + | chr1_3:66619543-66619562 | Msa0135070:intron | 10.0% |
| !! | AATATATATTAAAAAAAGCA+TGG | - | chr1_3:66620390-66620409 | None:intergenic | 10.0% |
| !! | TACTAAAAAAAACAAAAAAT+TGG | - | chr1_3:66620571-66620590 | None:intergenic | 10.0% |
| !!! | TTTTTAGTAATTTTTTTTAG+GGG | + | chr1_3:66620582-66620601 | Msa0135070:intron | 10.0% |
| !! | AATTAATTATTGAATATCAA+TGG | + | chr1_3:66621234-66621253 | Msa0135070:intron | 10.0% |
| !! | AAAAATCGAAAATCTTAAAA+GGG | - | chr1_3:66618111-66618130 | None:intergenic | 15.0% |
| !!! | TTACTTTTTTTTATCATTTC+AGG | + | chr1_3:66618144-66618163 | Msa0135070:intron | 15.0% |
| !! | TGTATCAGTTAAAATTAATT+TGG | + | chr1_3:66618209-66618228 | Msa0135070:CDS | 15.0% |
| !! | AAAATAAACTTATATCAAGA+TGG | - | chr1_3:66619788-66619807 | None:intergenic | 15.0% |
| !! | GACAAATTAATAAGTTAATA+AGG | - | chr1_3:66621081-66621100 | None:intergenic | 15.0% |
| !! | AATAAAACGTATACATTATT+TGG | - | chr1_3:66621138-66621157 | None:intergenic | 15.0% |
| !!! | CTAAGATTTTTTAAAATAGA+TGG | - | chr1_3:66621370-66621389 | None:intergenic | 15.0% |
| !!! | CATCTATTTTAAAAAATCTT+AGG | + | chr1_3:66621368-66621387 | Msa0135070:intron | 15.0% |
| !! | CAATATTCCTTAATTTATAT+TGG | - | chr1_3:66621905-66621924 | None:intergenic | 15.0% |
| !!! | TAATGTTAATTTTAAAACTC+AGG | + | chr1_3:66622368-66622387 | Msa0135070:three_prime_UTR | 15.0% |
| !! | AAAATCGAAAATCTTAAAAG+GGG | - | chr1_3:66618110-66618129 | None:intergenic | 20.0% |
| !! | GAAAAATCGAAAATCTTAAA+AGG | - | chr1_3:66618112-66618131 | None:intergenic | 20.0% |
| !!! | TCAGTTAAAATTAATTTGGA+TGG | + | chr1_3:66618213-66618232 | Msa0135070:CDS | 20.0% |
| !!! | AAAATTAATTTGGATGGAAA+TGG | + | chr1_3:66618219-66618238 | Msa0135070:CDS | 20.0% |
| !!! | AAATTAATTTGGATGGAAAT+GGG | + | chr1_3:66618220-66618239 | Msa0135070:CDS | 20.0% |
| !!! | CCATTTTCTTAAATTCTTAT+TGG | - | chr1_3:66618376-66618395 | None:intergenic | 20.0% |
| !! | CCAATAAGAATTTAAGAAAA+TGG | + | chr1_3:66618373-66618392 | Msa0135070:intron | 20.0% |
| !! | ATCTAAAAATAAATGTTGCA+AGG | + | chr1_3:66618584-66618603 | Msa0135070:intron | 20.0% |
| !! | TGTAGTAGATATTAGATAAA+GGG | + | chr1_3:66618669-66618688 | Msa0135070:intron | 20.0% |
| !! | CAAAATGCAATTTAACTAAT+TGG | + | chr1_3:66619201-66619220 | Msa0135070:intron | 20.0% |
| !! | ATTTAACATATTTGTAAGCA+AGG | - | chr1_3:66619536-66619555 | None:intergenic | 20.0% |
| !! | ATGTCTGTTTAAATACTTTA+TGG | + | chr1_3:66619947-66619966 | Msa0135070:intron | 20.0% |
| !! | TGACATATATACATAGTTTA+GGG | - | chr1_3:66620624-66620643 | None:intergenic | 20.0% |
| !!! | GTTTCTATTTTTTTAACGAA+AGG | - | chr1_3:66620707-66620726 | None:intergenic | 20.0% |
| !!! | TATTTGGAATCAAAGTTTTA+TGG | - | chr1_3:66621122-66621141 | None:intergenic | 20.0% |
| !!! | GTATTGATTGTTGATTTTAA+CGG | + | chr1_3:66621310-66621329 | Msa0135070:intron | 20.0% |
| !! | AACAATTAACAGAGTTAATT+AGG | + | chr1_3:66621333-66621352 | Msa0135070:intron | 20.0% |
| !!! | ATTTTAAAAAATCTTAGGAG+AGG | + | chr1_3:66621373-66621392 | Msa0135070:intron | 20.0% |
| !!! | AGTGTCAATTTTTAAAATAG+AGG | + | chr1_3:66621398-66621417 | Msa0135070:intron | 20.0% |
| !!! | GTGTCAATTTTTAAAATAGA+GGG | + | chr1_3:66621399-66621418 | Msa0135070:intron | 20.0% |
| !!! | TGTCAATTTTTAAAATAGAG+GGG | + | chr1_3:66621400-66621419 | Msa0135070:intron | 20.0% |
| !! | AACCATCTTCATAAAAAAAA+GGG | - | chr1_3:66621473-66621492 | None:intergenic | 20.0% |
| !!! | GAACAATAACAATTTGTTTA+AGG | + | chr1_3:66621857-66621876 | Msa0135070:intron | 20.0% |
| ! | TTTCACATTCACAATCTTAA+TGG | + | chr1_3:66617827-66617846 | Msa0135070:exon | 25.0% |
| !! | AATTAATTTGGATGGAAATG+GGG | + | chr1_3:66618221-66618240 | Msa0135070:CDS | 25.0% |
| ! | GTGTAGTAGATATTAGATAA+AGG | + | chr1_3:66618668-66618687 | Msa0135070:intron | 25.0% |
| ! | GTCTATAAAAGATTCTATCT+AGG | + | chr1_3:66618722-66618741 | Msa0135070:intron | 25.0% |
| ! | AGAATCAGATTGTAATGATA+AGG | + | chr1_3:66618770-66618789 | Msa0135070:intron | 25.0% |
| !!! | AAGTAGTTTTCAAGTTAGAA+AGG | - | chr1_3:66618818-66618837 | None:intergenic | 25.0% |
| !! | AACTTGAAAACTACTTGTTA+AGG | + | chr1_3:66618822-66618841 | Msa0135070:intron | 25.0% |
| ! | CTACTTATTAAAGTTGTTTG+TGG | + | chr1_3:66619082-66619101 | Msa0135070:intron | 25.0% |
| ! | TATAATCATTGTTAGAGTTG+TGG | - | chr1_3:66619227-66619246 | None:intergenic | 25.0% |
| ! | TGATTATAATCTTATGACTG+TGG | + | chr1_3:66619239-66619258 | Msa0135070:intron | 25.0% |
| ! | GATTATAATCTTATGACTGT+GGG | + | chr1_3:66619240-66619259 | Msa0135070:intron | 25.0% |
| ! | TTAACTCAAATCTTTAACAG+AGG | - | chr1_3:66619485-66619504 | None:intergenic | 25.0% |
| !!! | GAAACTTTGAAACAATGTAA+TGG | + | chr1_3:66619571-66619590 | Msa0135070:intron | 25.0% |
| ! | AGGTTTCTGAATTGAAAATT+AGG | + | chr1_3:66619750-66619769 | Msa0135070:intron | 25.0% |
| ! | CACAAAACAGAAATTATAGT+GGG | - | chr1_3:66619811-66619830 | None:intergenic | 25.0% |
| ! | AGTACATAAAAATAAGGAAC+GGG | - | chr1_3:66620098-66620117 | None:intergenic | 25.0% |
| ! | CAGTACATAAAAATAAGGAA+CGG | - | chr1_3:66620099-66620118 | None:intergenic | 25.0% |
| ! | CTCATCAGTACATAAAAATA+AGG | - | chr1_3:66620104-66620123 | None:intergenic | 25.0% |
| ! | TGCACAAATGAATTCAAAAT+TGG | - | chr1_3:66620418-66620437 | None:intergenic | 25.0% |
| ! | AAATTCCCATCATATTATTG+AGG | + | chr1_3:66620452-66620471 | Msa0135070:CDS | 25.0% |
| ! | GACATATATACATAGTTTAG+GGG | - | chr1_3:66620623-66620642 | None:intergenic | 25.0% |
| ! | GTGACATATATACATAGTTT+AGG | - | chr1_3:66620625-66620644 | None:intergenic | 25.0% |
| ! | ATGTCAATTGAGAAAATAGA+GGG | - | chr1_3:66620655-66620674 | None:intergenic | 25.0% |
| ! | AATGTCAATTGAGAAAATAG+AGG | - | chr1_3:66620656-66620675 | None:intergenic | 25.0% |
| !!! | CTATTTTTTTAACGAAAGGT+AGG | - | chr1_3:66620703-66620722 | None:intergenic | 25.0% |
| ! | TAAACAACTTCACAAACTAA+GGG | - | chr1_3:66620846-66620865 | None:intergenic | 25.0% |
| !! | AAATGGATATTTTATGCGAT+GGG | - | chr1_3:66620979-66620998 | None:intergenic | 25.0% |
| !! | AAAATGGATATTTTATGCGA+TGG | - | chr1_3:66620980-66620999 | None:intergenic | 25.0% |
| ! | TTATGTATGTGCAATCAAAA+TGG | - | chr1_3:66620996-66621015 | None:intergenic | 25.0% |
| !! | GTTTCAATCAGAATGAATTT+TGG | + | chr1_3:66621022-66621041 | Msa0135070:intron | 25.0% |
| !!! | ATGTATACGTTTTATTTCCA+TGG | + | chr1_3:66621142-66621161 | Msa0135070:intron | 25.0% |
| !!! | ATTGAATATCAATGGTTTTG+TGG | + | chr1_3:66621242-66621261 | Msa0135070:intron | 25.0% |
| ! | ATTAACAGAGTTAATTAGGA+AGG | + | chr1_3:66621337-66621356 | Msa0135070:intron | 25.0% |
| ! | TTAACAGAGTTAATTAGGAA+GGG | + | chr1_3:66621338-66621357 | Msa0135070:intron | 25.0% |
| !!! | TTCCCTTTTTTTTATGAAGA+TGG | + | chr1_3:66621468-66621487 | Msa0135070:intron | 25.0% |
| ! | CAACCATCTTCATAAAAAAA+AGG | - | chr1_3:66621474-66621493 | None:intergenic | 25.0% |
| !! | AAATAATTTTTATGCAGCAC+TGG | - | chr1_3:66621525-66621544 | None:intergenic | 25.0% |
| !! | AATTCCTTGTTTATACTCTA+CGG | + | chr1_3:66621617-66621636 | Msa0135070:intron | 25.0% |
| ! | TCCTTAATTTATATTGGTGA+GGG | - | chr1_3:66621899-66621918 | None:intergenic | 25.0% |
| ! | TTCCTTAATTTATATTGGTG+AGG | - | chr1_3:66621900-66621919 | None:intergenic | 25.0% |
| !!! | TTAATTTTAAAACTCAGGAC+AGG | + | chr1_3:66622373-66622392 | Msa0135070:three_prime_UTR | 25.0% |
| AGATTGAAGCTTGAAAAAGT+GGG | - | chr1_3:66617959-66617978 | None:intergenic | 30.0% | |
| AAGATTGAAGCTTGAAAAAG+TGG | - | chr1_3:66617960-66617979 | None:intergenic | 30.0% | |
| AAGTAAAACCTGAGTCAATT+GGG | - | chr1_3:66618070-66618089 | None:intergenic | 30.0% | |
| ! | AACTGATACATTAGTTTCCT+TGG | - | chr1_3:66618199-66618218 | None:intergenic | 30.0% |
| TCAAGCATATGATCAAGAAA+GGG | - | chr1_3:66618270-66618289 | None:intergenic | 30.0% | |
| ATCAAGCATATGATCAAGAA+AGG | - | chr1_3:66618271-66618290 | None:intergenic | 30.0% | |
| CAATGAAATAGTACACATTC+TGG | - | chr1_3:66618610-66618629 | None:intergenic | 30.0% | |
| TTATAGTTGAATACTGAGCA+TGG | + | chr1_3:66618640-66618659 | Msa0135070:intron | 30.0% | |
| TATAGTTGAATACTGAGCAT+GGG | + | chr1_3:66618641-66618660 | Msa0135070:intron | 30.0% | |
| TAGATATTAGATAAAGGGCT+AGG | + | chr1_3:66618674-66618693 | Msa0135070:intron | 30.0% | |
| TTTGTTCACATAAACTGACA+CGG | - | chr1_3:66618891-66618910 | None:intergenic | 30.0% | |
| TCAGTTTATGTGAACAAACT+TGG | + | chr1_3:66618893-66618912 | Msa0135070:intron | 30.0% | |
| TGAGGATATTGCTTAAAGAT+TGG | + | chr1_3:66619134-66619153 | Msa0135070:intron | 30.0% | |
| ! | AAATTGCATTTTGCACAGAA+AGG | - | chr1_3:66619194-66619213 | None:intergenic | 30.0% |
| AGACGCAAAATTTATTGATG+TGG | - | chr1_3:66619643-66619662 | None:intergenic | 30.0% | |
| TCAGAAAGTTCAGTTATCAA+TGG | + | chr1_3:66619662-66619681 | Msa0135070:intron | 30.0% | |
| GCACAAAACAGAAATTATAG+TGG | - | chr1_3:66619812-66619831 | None:intergenic | 30.0% | |
| TTTAAGTCATAACCTAGATG+CGG | - | chr1_3:66619883-66619902 | None:intergenic | 30.0% | |
| TTTGACTATTGAGCTTCAAA+TGG | + | chr1_3:66620011-66620030 | Msa0135070:intron | 30.0% | |
| TAAAAATAAGGAACGGGAAA+AGG | - | chr1_3:66620092-66620111 | None:intergenic | 30.0% | |
| ! | AATGCTAAAGATGTTTTACC+AGG | + | chr1_3:66620304-66620323 | Msa0135070:intron | 30.0% |
| ! | TAAATTCAAGCCTCAGTTTT+CGG | + | chr1_3:66620361-66620380 | Msa0135070:intron | 30.0% |
| ! | AATATGATGGGAATTTGTTC+CGG | - | chr1_3:66620448-66620467 | None:intergenic | 30.0% |
| ATATATACATAGTTTAGGGG+AGG | - | chr1_3:66620620-66620639 | None:intergenic | 30.0% | |
| TGTCAATTGAGAAAATAGAG+GGG | - | chr1_3:66620654-66620673 | None:intergenic | 30.0% | |
| ATGATTCAACCATAGTATGA+AGG | - | chr1_3:66620751-66620770 | None:intergenic | 30.0% | |
| AAACAACTTCACAAACTAAG+GGG | - | chr1_3:66620845-66620864 | None:intergenic | 30.0% | |
| CTAAACAACTTCACAAACTA+AGG | - | chr1_3:66620847-66620866 | None:intergenic | 30.0% | |
| ! | AATGGATATTTTATGCGATG+GGG | - | chr1_3:66620978-66620997 | None:intergenic | 30.0% |
| AATATTAAACGAGCAACCAT+GGG | - | chr1_3:66621051-66621070 | None:intergenic | 30.0% | |
| AAATATTAAACGAGCAACCA+TGG | - | chr1_3:66621052-66621071 | None:intergenic | 30.0% | |
| !!! | AGTGTGCTCAGTTTTTTTTA+CGG | + | chr1_3:66621198-66621217 | Msa0135070:intron | 30.0% |
| ! | TGTCATTTAAAGAAACCTCA+AGG | + | chr1_3:66621430-66621449 | Msa0135070:intron | 30.0% |
| GTCATTTAAAGAAACCTCAA+GGG | + | chr1_3:66621431-66621450 | Msa0135070:intron | 30.0% | |
| AAACTTGTAATAAAGTGACG+AGG | - | chr1_3:66621559-66621578 | None:intergenic | 30.0% | |
| ACCCTCACCAATATAAATTA+AGG | + | chr1_3:66621895-66621914 | Msa0135070:intron | 30.0% | |
| TAATCGTAAGTTAGACAATC+AGG | + | chr1_3:66621955-66621974 | Msa0135070:intron | 30.0% | |
| AATCGTAAGTTAGACAATCA+GGG | + | chr1_3:66621956-66621975 | Msa0135070:intron | 30.0% | |
| CTCAAATATGCAGTTCAAAA+GGG | + | chr1_3:66622029-66622048 | Msa0135070:intron | 30.0% | |
| TCAAATATGCAGTTCAAAAG+GGG | + | chr1_3:66622030-66622049 | Msa0135070:intron | 30.0% | |
| CTTCTTTGTACATAAGGATT+CGG | + | chr1_3:66622285-66622304 | Msa0135070:three_prime_UTR | 30.0% | |
| ! | AAGAGAGTGAAGTAGTTTGT+CGG | - | chr1_3:66617793-66617812 | None:intergenic | 35.0% |
| GAAGTAAAACCTGAGTCAAT+TGG | - | chr1_3:66618071-66618090 | None:intergenic | 35.0% | |
| ! | ATCATTTCAGGTGCTAGAAT+TGG | + | chr1_3:66618156-66618175 | Msa0135070:intron | 35.0% |
| TAGAATTGGAGAGGTGAAAA+GGG | + | chr1_3:66618170-66618189 | Msa0135070:CDS | 35.0% | |
| ACGCCTTCAATATAAAGTGT+TGG | + | chr1_3:66618471-66618490 | Msa0135070:intron | 35.0% | |
| GCACCAACACTTTATATTGA+AGG | - | chr1_3:66618477-66618496 | None:intergenic | 35.0% | |
| TGCGTAATAAAAGACATACG+TGG | - | chr1_3:66618534-66618553 | None:intergenic | 35.0% | |
| ACTGTTTGACGTACATGTAA+AGG | + | chr1_3:66618947-66618966 | Msa0135070:CDS | 35.0% | |
| CGAACATGCTTCATTATCTT+AGG | + | chr1_3:66619110-66619129 | Msa0135070:intron | 35.0% | |
| ! | TGCTTCATTATCTTAGGTTG+AGG | + | chr1_3:66619116-66619135 | Msa0135070:intron | 35.0% |
| ! | AGCTTTAGTACGATGATAGA+TGG | - | chr1_3:66619310-66619329 | None:intergenic | 35.0% |
| ATTTACGTTACTTCATCTCC+AGG | + | chr1_3:66619333-66619352 | Msa0135070:intron | 35.0% | |
| TGAACTAATGCTTCATCAAG+TGG | - | chr1_3:66619418-66619437 | None:intergenic | 35.0% | |
| !! | AATGAGAAAGCATTGACACA+AGG | - | chr1_3:66619707-66619726 | None:intergenic | 35.0% |
| TCTAGCAGTACTTGTTCATA+AGG | + | chr1_3:66619730-66619749 | Msa0135070:intron | 35.0% | |
| ACTTAAACATACCTACTCAG+AGG | + | chr1_3:66619896-66619915 | Msa0135070:CDS | 35.0% | |
| CTTAAACATACCTACTCAGA+GGG | + | chr1_3:66619897-66619916 | Msa0135070:CDS | 35.0% | |
| ! | TTATGTACTGATGAGTCTTC+TGG | + | chr1_3:66620109-66620128 | Msa0135070:intron | 35.0% |
| !! | GGTACTGATACATAGAATCT+AGG | + | chr1_3:66620210-66620229 | Msa0135070:intron | 35.0% |
| ! | TTCATTTGTGCACAGTTTTC+CGG | + | chr1_3:66620426-66620445 | Msa0135070:intron | 35.0% |
| GGTTGCCTCAATAATATGAT+GGG | - | chr1_3:66620460-66620479 | None:intergenic | 35.0% | |
| AGGTTGCCTCAATAATATGA+TGG | - | chr1_3:66620461-66620480 | None:intergenic | 35.0% | |
| ! | AACCTTCAAAGCATTTGCTA+GGG | + | chr1_3:66620476-66620495 | Msa0135070:CDS | 35.0% |
| TAAACCTTGGTATTGTTCCA+CGG | - | chr1_3:66620536-66620555 | None:intergenic | 35.0% | |
| GTTTGAGAGATACTAAACCT+TGG | - | chr1_3:66620549-66620568 | None:intergenic | 35.0% | |
| GTCAATTGAGAAAATAGAGG+GGG | - | chr1_3:66620653-66620672 | None:intergenic | 35.0% | |
| TATGAAGGACAGAAGAAGAA+GGG | - | chr1_3:66620736-66620755 | None:intergenic | 35.0% | |
| TTCTTCTGTCCTTCATACTA+TGG | + | chr1_3:66620739-66620758 | Msa0135070:intron | 35.0% | |
| AACAACTTCACAAACTAAGG+GGG | - | chr1_3:66620844-66620863 | None:intergenic | 35.0% | |
| TGAAGAGGTTGCAAAAAGTT+TGG | + | chr1_3:66620913-66620932 | Msa0135070:intron | 35.0% | |
| GAAGAGGTTGCAAAAAGTTT+GGG | + | chr1_3:66620914-66620933 | Msa0135070:intron | 35.0% | |
| ! | GAATGAATTTTGGATTCCCA+TGG | + | chr1_3:66621032-66621051 | Msa0135070:intron | 35.0% |
| TTATTTCCATGGTGAAACAG+AGG | + | chr1_3:66621153-66621172 | Msa0135070:intron | 35.0% | |
| GTAAAAAAAACTGAGCACAC+TGG | - | chr1_3:66621199-66621218 | None:intergenic | 35.0% | |
| !!! | GTGTGCTCAGTTTTTTTTAC+GGG | + | chr1_3:66621199-66621218 | Msa0135070:intron | 35.0% |
| !!! | TGTGCTCAGTTTTTTTTACG+GGG | + | chr1_3:66621200-66621219 | Msa0135070:intron | 35.0% |
| !!! | GAATATCAATGGTTTTGTGG+AGG | + | chr1_3:66621245-66621264 | Msa0135070:intron | 35.0% |
| ATTTAAAGAAACCTCAAGGG+AGG | + | chr1_3:66621434-66621453 | Msa0135070:intron | 35.0% | |
| CAAGATGATATATCTGTTCC+TGG | + | chr1_3:66621583-66621602 | Msa0135070:intron | 35.0% | |
| AGGAATTGAACATTCATTCC+AGG | - | chr1_3:66621604-66621623 | None:intergenic | 35.0% | |
| CAATCCGTAGAGTATAAACA+AGG | - | chr1_3:66621624-66621643 | None:intergenic | 35.0% | |
| TTCAACTCAGTTGTCAATCA+CGG | + | chr1_3:66621730-66621749 | Msa0135070:intron | 35.0% | |
| !! | TGCAAAGTGTTGTCAAATAG+TGG | - | chr1_3:66621820-66621839 | None:intergenic | 35.0% |
| ! | CCTTTTGAACTGCATATTTG+AGG | - | chr1_3:66622031-66622050 | None:intergenic | 35.0% |
| CCTCAAATATGCAGTTCAAA+AGG | + | chr1_3:66622028-66622047 | Msa0135070:intron | 35.0% | |
| ATCAAGCATATGCATCGAAA+TGG | + | chr1_3:66622139-66622158 | Msa0135070:three_prime_UTR | 35.0% | |
| ! | CAATGTTGTTTACAGAGACT+AGG | - | chr1_3:66622224-66622243 | None:intergenic | 35.0% |
| !! | GTTAGCCTTCTTTGTACATA+AGG | + | chr1_3:66622279-66622298 | Msa0135070:three_prime_UTR | 35.0% |
| CGAATCCTTATGTACAAAGA+AGG | - | chr1_3:66622287-66622306 | None:intergenic | 35.0% | |
| GGGAGAAAATCAGCATATAT+GGG | - | chr1_3:66622409-66622428 | None:intergenic | 35.0% | |
| ! | AGAGAGTGAAGTAGTTTGTC+GGG | - | chr1_3:66617792-66617811 | None:intergenic | 40.0% |
| TTTGAGTGCAACTGAGTTTG+AGG | - | chr1_3:66617864-66617883 | None:intergenic | 40.0% | |
| GATGATTTCAGAGACGGAAA+TGG | - | chr1_3:66617894-66617913 | None:intergenic | 40.0% | |
| !! | TTCCGTCTCTGAAATCATCT+AGG | + | chr1_3:66617895-66617914 | Msa0135070:CDS | 40.0% |
| !! | TCCGTCTCTGAAATCATCTA+GGG | + | chr1_3:66617896-66617915 | Msa0135070:CDS | 40.0% |
| ACCCTAGATGATTTCAGAGA+CGG | - | chr1_3:66617900-66617919 | None:intergenic | 40.0% | |
| CTTGAAAAAGTGGGCATGTT+GGG | - | chr1_3:66617950-66617969 | None:intergenic | 40.0% | |
| ATTCAGTAAGGTGAGATTGC+GGG | - | chr1_3:66617985-66618004 | None:intergenic | 40.0% | |
| GATTCAGTAAGGTGAGATTG+CGG | - | chr1_3:66617986-66618005 | None:intergenic | 40.0% | |
| ! | TCAACTTTCCCAATTGACTC+AGG | + | chr1_3:66618059-66618078 | Msa0135070:CDS | 40.0% |
| GAAAATCTTAAAAGGGGCAG+GGG | - | chr1_3:66618104-66618123 | None:intergenic | 40.0% | |
| CGAAAATCTTAAAAGGGGCA+GGG | - | chr1_3:66618105-66618124 | None:intergenic | 40.0% | |
| TCGAAAATCTTAAAAGGGGC+AGG | - | chr1_3:66618106-66618125 | None:intergenic | 40.0% | |
| CTAGAATTGGAGAGGTGAAA+AGG | + | chr1_3:66618169-66618188 | Msa0135070:CDS | 40.0% | |
| TGGCAGTGCAAAAGTAACAA+AGG | - | chr1_3:66618324-66618343 | None:intergenic | 40.0% | |
| ! | TTATATTGAAGGCGTGTTCC+AGG | - | chr1_3:66618466-66618485 | None:intergenic | 40.0% |
| ! | TTTCAGCAACTTGCTTCACA+TGG | + | chr1_3:66618924-66618943 | Msa0135070:intron | 40.0% |
| CGACATCTTCATTTGTGTGA+TGG | - | chr1_3:66618998-66619017 | None:intergenic | 40.0% | |
| TATACAGCTCACTTAGCTGT+TGG | - | chr1_3:66619044-66619063 | None:intergenic | 40.0% | |
| !! | GTGATAGGAAGGGTATTAAC+CGG | + | chr1_3:66619374-66619393 | Msa0135070:CDS | 40.0% |
| AGCATTAGTTCACGTTTCTC+TGG | + | chr1_3:66619426-66619445 | Msa0135070:CDS | 40.0% | |
| ! | ATTTGAGTTAACGCGTGTTG+AGG | + | chr1_3:66619494-66619513 | Msa0135070:intron | 40.0% |
| ATAAATCCTGGACAAGGTCA+GGG | - | chr1_3:66619852-66619871 | None:intergenic | 40.0% | |
| AAATAAGGAACGGGAAAAGG+TGG | - | chr1_3:66620089-66620108 | None:intergenic | 40.0% | |
| ! | TGGACATCCTTGTTTGTAGT+TGG | + | chr1_3:66620129-66620148 | Msa0135070:intron | 40.0% |
| ! | ACATCCTTGTTTGTAGTTGG+TGG | + | chr1_3:66620132-66620151 | Msa0135070:intron | 40.0% |
| !!! | GGAGCATTTTTTCCAGTCAT+TGG | + | chr1_3:66620153-66620172 | Msa0135070:CDS | 40.0% |
| CATAGAATCTAGGTCAGAGT+CGG | + | chr1_3:66620220-66620239 | Msa0135070:intron | 40.0% | |
| ! | CAACCTTCAAAGCATTTGCT+AGG | + | chr1_3:66620475-66620494 | Msa0135070:CDS | 40.0% |
| GTATGAAGGACAGAAGAAGA+AGG | - | chr1_3:66620737-66620756 | None:intergenic | 40.0% | |
| ACAACTTCACAAACTAAGGG+GGG | - | chr1_3:66620843-66620862 | None:intergenic | 40.0% | |
| TGTATCCCATCAATGAGAGA+TGG | + | chr1_3:66620867-66620886 | Msa0135070:intron | 40.0% | |
| TTCTGCCATCTCTCATTGAT+GGG | - | chr1_3:66620875-66620894 | None:intergenic | 40.0% | |
| AGGTAAGATGGAGATTGAAG+AGG | + | chr1_3:66620898-66620917 | Msa0135070:intron | 40.0% | |
| !!! | GTGCTCAGTTTTTTTTACGG+GGG | + | chr1_3:66621201-66621220 | Msa0135070:intron | 40.0% |
| ACAGAGTTAATTAGGAAGGG+AGG | + | chr1_3:66621341-66621360 | Msa0135070:intron | 40.0% | |
| CTTGTAATAAAGTGACGAGG+AGG | - | chr1_3:66621556-66621575 | None:intergenic | 40.0% | |
| ! | CTCATAAATGCCAGTCTTGT+GGG | + | chr1_3:66622179-66622198 | Msa0135070:three_prime_UTR | 40.0% |
| ! | CTGTCAAACTGATTCTCATG+TGG | - | chr1_3:66622312-66622331 | None:intergenic | 40.0% |
| GGGGAGAAAATCAGCATATA+TGG | - | chr1_3:66622410-66622429 | None:intergenic | 40.0% | |
| CTGAACTGAACAAAGATGTG+GGG | - | chr1_3:66622429-66622448 | None:intergenic | 40.0% | |
| CGGGAACAGATGCAAATTGT+TGG | - | chr1_3:66617773-66617792 | None:intergenic | 45.0% | |
| AAAAGTGGGCATGTTGGGTT+GGG | - | chr1_3:66617945-66617964 | None:intergenic | 45.0% | |
| AAAAAGTGGGCATGTTGGGT+TGG | - | chr1_3:66617946-66617965 | None:intergenic | 45.0% | |
| GCTTGAAAAAGTGGGCATGT+TGG | - | chr1_3:66617951-66617970 | None:intergenic | 45.0% | |
| TTCAGGTGCTAGAATTGGAG+AGG | + | chr1_3:66618161-66618180 | Msa0135070:intron | 45.0% | |
| GGGGTTGCTGATAATAGTTC+TGG | + | chr1_3:66618240-66618259 | Msa0135070:CDS | 45.0% | |
| ATAAAGGGCTAGGTGCACAT+GGG | + | chr1_3:66618684-66618703 | Msa0135070:intron | 45.0% | |
| GACGTACATGTAAAGGCTAC+AGG | + | chr1_3:66618954-66618973 | Msa0135070:CDS | 45.0% | |
| ! | GAAGATGTCGCTCTTGCTAT+TGG | + | chr1_3:66619008-66619027 | Msa0135070:CDS | 45.0% |
| !! | TGTCGCTCTTGCTATTGGAA+CGG | + | chr1_3:66619013-66619032 | Msa0135070:CDS | 45.0% |
| !! | AGGAAGGGTATTAACCGGTT+TGG | + | chr1_3:66619379-66619398 | Msa0135070:CDS | 45.0% |
| GAGCAGAGAAGTTACCAAAC+CGG | - | chr1_3:66619396-66619415 | None:intergenic | 45.0% | |
| GATAAATCCTGGACAAGGTC+AGG | - | chr1_3:66619853-66619872 | None:intergenic | 45.0% | |
| GACCTTGTCCAGGATTTATC+TGG | + | chr1_3:66619853-66619872 | Msa0135070:intron | 45.0% | |
| AGTCATAACCTAGATGCGGT+CGG | - | chr1_3:66619879-66619898 | None:intergenic | 45.0% | |
| AACATACCTACTCAGAGGGT+TGG | + | chr1_3:66619901-66619920 | Msa0135070:CDS | 45.0% | |
| ACATACCTACTCAGAGGGTT+GGG | + | chr1_3:66619902-66619921 | Msa0135070:CDS | 45.0% | |
| TGCTCCACCAACTACAAACA+AGG | - | chr1_3:66620139-66620158 | None:intergenic | 45.0% | |
| CAGATGTGTTCACCAATGAC+TGG | - | chr1_3:66620168-66620187 | None:intergenic | 45.0% | |
| CAGTCATTGGTGAACACATC+TGG | + | chr1_3:66620166-66620185 | Msa0135070:CDS | 45.0% | |
| TATGACCCTTCACATTCGAC+AGG | + | chr1_3:66620189-66620208 | Msa0135070:CDS | 45.0% | |
| CAGTACCTGTCGAATGTGAA+GGG | - | chr1_3:66620197-66620216 | None:intergenic | 45.0% | |
| TCAGTACCTGTCGAATGTGA+AGG | - | chr1_3:66620198-66620217 | None:intergenic | 45.0% | |
| !! | TGTACAAAGAGCATCTAGCC+TGG | - | chr1_3:66620325-66620344 | None:intergenic | 45.0% |
| AGCCCTAGCAAATGCTTTGA+AGG | - | chr1_3:66620481-66620500 | None:intergenic | 45.0% | |
| TAGGCAACTCTTAACAGCAG+GGG | - | chr1_3:66620684-66620703 | None:intergenic | 45.0% | |
| GTAGGCAACTCTTAACAGCA+GGG | - | chr1_3:66620685-66620704 | None:intergenic | 45.0% | |
| CTTCTGCCATCTCTCATTGA+TGG | - | chr1_3:66620876-66620895 | None:intergenic | 45.0% | |
| CATCAATGAGAGATGGCAGA+AGG | + | chr1_3:66620874-66620893 | Msa0135070:intron | 45.0% | |
| AATGAGAGATGGCAGAAGGA+AGG | + | chr1_3:66620878-66620897 | Msa0135070:intron | 45.0% | |
| ATGGCAGAAGGAAGGTAAGA+TGG | + | chr1_3:66620886-66620905 | Msa0135070:intron | 45.0% | |
| CTCAAACCTCTGTTTCACCA+TGG | - | chr1_3:66621162-66621181 | None:intergenic | 45.0% | |
| ! | AATTGCATTGACCTCCCTTG+AGG | - | chr1_3:66621448-66621467 | None:intergenic | 45.0% |
| CTTCAGCTGCTATCCATGAT+TGG | + | chr1_3:66622073-66622092 | Msa0135070:three_prime_UTR | 45.0% | |
| TGCTATCCATGATTGGATCG+AGG | + | chr1_3:66622080-66622099 | Msa0135070:three_prime_UTR | 45.0% | |
| TTGATGCCTCGATCCAATCA+TGG | - | chr1_3:66622089-66622108 | None:intergenic | 45.0% | |
| GCATCGAAATGGTCCTTAGA+TGG | + | chr1_3:66622150-66622169 | Msa0135070:three_prime_UTR | 45.0% | |
| AAATGGTCCTTAGATGGCAG+TGG | + | chr1_3:66622156-66622175 | Msa0135070:three_prime_UTR | 45.0% | |
| TTATGAGCCACTGCCATCTA+AGG | - | chr1_3:66622166-66622185 | None:intergenic | 45.0% | |
| GCTCATAAATGCCAGTCTTG+TGG | + | chr1_3:66622178-66622197 | Msa0135070:three_prime_UTR | 45.0% | |
| !!! | TTTTTTTAGTAATTTTTTTT+AGG | + | chr1_3:66620580-66620599 | Msa0135070:intron | 5.0% |
| !!! | TTTTTTAGTAATTTTTTTTA+GGG | + | chr1_3:66620581-66620600 | Msa0135070:intron | 5.0% |
| TCACCTTACTGAATCCTCCC+AGG | + | chr1_3:66617991-66618010 | Msa0135070:CDS | 50.0% | |
| GTTCCTGGGAGGATTCAGTA+AGG | - | chr1_3:66617997-66618016 | None:intergenic | 50.0% | |
| ATTGCCATCCACCAAAGCAG+CGG | - | chr1_3:66618027-66618046 | None:intergenic | 50.0% | |
| AGAGGTGAAAAGGGTCACCA+AGG | + | chr1_3:66618179-66618198 | Msa0135070:CDS | 50.0% | |
| !! | GCACATGTTGGTGTCAGACA+TGG | - | chr1_3:66618444-66618463 | None:intergenic | 50.0% |
| GATAAAGGGCTAGGTGCACA+TGG | + | chr1_3:66618683-66618702 | Msa0135070:intron | 50.0% | |
| CTAGGTGCACATGGGATGAA+TGG | + | chr1_3:66618692-66618711 | Msa0135070:intron | 50.0% | |
| ! | CAGGCTCTTGGTGATAGGAA+GGG | + | chr1_3:66619364-66619383 | Msa0135070:CDS | 50.0% |
| GGCCAGATAAATCCTGGACA+AGG | - | chr1_3:66619858-66619877 | None:intergenic | 50.0% | |
| CATACCTACTCAGAGGGTTG+GGG | + | chr1_3:66619903-66619922 | Msa0135070:CDS | 50.0% | |
| AAGGAACGGGAAAAGGTGGA+AGG | - | chr1_3:66620085-66620104 | None:intergenic | 50.0% | |
| AGCATGGTCTCCGAAAACTG+AGG | - | chr1_3:66620374-66620393 | None:intergenic | 50.0% | |
| GGTAGGCAACTCTTAACAGC+AGG | - | chr1_3:66620686-66620705 | None:intergenic | 50.0% | |
| GTTACTGTTCGAACGAGGGA+TGG | - | chr1_3:66620803-66620822 | None:intergenic | 50.0% | |
| !! | GGGTGTTACTGTTCGAACGA+GGG | - | chr1_3:66620807-66620826 | None:intergenic | 50.0% |
| !! | AGGGTGTTACTGTTCGAACG+AGG | - | chr1_3:66620808-66620827 | None:intergenic | 50.0% |
| CAAATGCTGACCCACAAGAC+TGG | - | chr1_3:66622192-66622211 | None:intergenic | 50.0% | |
| ! | GCTGCTTTGGTGGATGGCAA+TGG | + | chr1_3:66618026-66618045 | Msa0135070:CDS | 55.0% |
| TCTTAAAAGGGGCAGGGGTG+AGG | - | chr1_3:66618099-66618118 | None:intergenic | 55.0% | |
| TTGCACTGCCACACGTACAC+CGG | + | chr1_3:66618333-66618352 | Msa0135070:intron | 55.0% | |
| GTCTGACACCAACATGTGCC+TGG | + | chr1_3:66618445-66618464 | Msa0135070:intron | 55.0% | |
| GGTGCACATGGGATGAATGG+TGG | + | chr1_3:66618695-66618714 | Msa0135070:intron | 55.0% | |
| TCATCTCCAGGCTTTGCTGC+AGG | + | chr1_3:66619345-66619364 | Msa0135070:intron | 55.0% | |
| ! | TGCTGCAGGCTCTTGGTGAT+AGG | + | chr1_3:66619359-66619378 | Msa0135070:CDS | 55.0% |
| ! | GCAGGCTCTTGGTGATAGGA+AGG | + | chr1_3:66619363-66619382 | Msa0135070:CDS | 55.0% |
| TTTCCTCCCTGACCTTGTCC+AGG | + | chr1_3:66619843-66619862 | Msa0135070:intron | 55.0% | |
| AATCCTGGACAAGGTCAGGG+AGG | - | chr1_3:66619849-66619868 | None:intergenic | 55.0% | |
| TTATCTGGCCGACCGCATCT+AGG | + | chr1_3:66619868-66619887 | Msa0135070:CDS | 55.0% | |
| TATGCCCCAACCCTCTGAGT+AGG | - | chr1_3:66619910-66619929 | None:intergenic | 55.0% | |
| GAGTATGATACACGTCGCCG+TGG | + | chr1_3:66620516-66620535 | Msa0135070:CDS | 55.0% | |
| GTCGCCGTGGAACAATACCA+AGG | + | chr1_3:66620529-66620548 | Msa0135070:CDS | 55.0% | |
| GCAACTCTTAACAGCAGGGG+AGG | - | chr1_3:66620681-66620700 | None:intergenic | 55.0% | |
| ACTGTTCGAACGAGGGATGG+AGG | - | chr1_3:66620800-66620819 | None:intergenic | 55.0% | |
| !! | ATTTCTAGCCTCCACCGTCG+TGG | + | chr1_3:66620952-66620971 | Msa0135070:intron | 55.0% |
| TTTATGCGATGGGGCCACGA+CGG | - | chr1_3:66620969-66620988 | None:intergenic | 55.0% | |
| GTTGTCAATCACGGATCGCG+CGG | + | chr1_3:66621739-66621758 | Msa0135070:intron | 55.0% | |
| GAACATCTCCGCCGCTGCTT+TGG | + | chr1_3:66618013-66618032 | Msa0135070:CDS | 60.0% | |
| GTCAGTGTCCGGTGTACGTG+TGG | - | chr1_3:66618344-66618363 | None:intergenic | 60.0% | |
| GGCGACTACGTGTCAGTGTC+CGG | - | chr1_3:66618355-66618374 | None:intergenic | 60.0% | |
| GGCGTGTTCCAGGCACATGT+TGG | - | chr1_3:66618456-66618475 | None:intergenic | 60.0% | |
| CAAGAGCCTGCAGCAAAGCC+TGG | - | chr1_3:66619354-66619373 | None:intergenic | 60.0% | |
| CAGGCTTTGCTGCAGGCTCT+TGG | + | chr1_3:66619352-66619371 | Msa0135070:intron | 60.0% | |
| GCGGTCGGCCAGATAAATCC+TGG | - | chr1_3:66619864-66619883 | None:intergenic | 60.0% | |
| GGTTGGGGCATACGACACTC+AGG | + | chr1_3:66619918-66619937 | Msa0135070:CDS | 60.0% | |
| !! | AGGAGTGTTGCGGCACTGTG+AGG | - | chr1_3:66620780-66620799 | None:intergenic | 60.0% |
| !! | CGAGGGATGGAGGAGTGTTG+CGG | - | chr1_3:66620790-66620809 | None:intergenic | 60.0% |
| CAAACTAAGGGGGGTCGACG+AGG | - | chr1_3:66620834-66620853 | None:intergenic | 60.0% | |
| GCAGCGGCGGAGATGTTCCT+GGG | - | chr1_3:66618011-66618030 | None:intergenic | 65.0% | |
| AGCAGCGGCGGAGATGTTCC+TGG | - | chr1_3:66618012-66618031 | None:intergenic | 65.0% | |
| ! | CATCTCCGCCGCTGCTTTGG+TGG | + | chr1_3:66618016-66618035 | Msa0135070:CDS | 65.0% |
| ! | TCCGCCGCTGCTTTGGTGGA+TGG | + | chr1_3:66618020-66618039 | Msa0135070:CDS | 65.0% |
| GCCATCCACCAAAGCAGCGG+CGG | - | chr1_3:66618024-66618043 | None:intergenic | 65.0% | |
| ACTAAGGGGGGTCGACGAGG+AGG | - | chr1_3:66620831-66620850 | None:intergenic | 65.0% | |
| GCGGCGGAGATGTTCCTGGG+AGG | - | chr1_3:66618008-66618027 | None:intergenic | 70.0% | |
| AGGGGGGTCGACGAGGAGGA+GGG | - | chr1_3:66620827-66620846 | None:intergenic | 70.0% | |
| AAGGGGGGTCGACGAGGAGG+AGG | - | chr1_3:66620828-66620847 | None:intergenic | 70.0% | |
| ATGCGATGGGGCCACGACGG+TGG | - | chr1_3:66620966-66620985 | None:intergenic | 70.0% | |
| CGATGGGGCCACGACGGTGG+AGG | - | chr1_3:66620963-66620982 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 66617736 | 66622448 | 66617736 | ID=Msa0135070;Name=Msa0135070 |
| chr1_3 | mRNA | 66617736 | 66622448 | 66617736 | ID=Msa0135070-mRNA-1;Parent=Msa0135070;Name=Msa0135070-mRNA-1;_AED=0.13;_eAED=0.13;_QI=110|1|1|1|0.85|0.75|8|379|277 |
| chr1_3 | exon | 66617736 | 66618080 | 66617736 | ID=Msa0135070-mRNA-1:exon:22778;Parent=Msa0135070-mRNA-1 |
| chr1_3 | exon | 66618166 | 66618290 | 66618166 | ID=Msa0135070-mRNA-1:exon:22779;Parent=Msa0135070-mRNA-1 |
| chr1_3 | exon | 66618930 | 66619034 | 66618930 | ID=Msa0135070-mRNA-1:exon:22780;Parent=Msa0135070-mRNA-1 |
| chr1_3 | exon | 66619355 | 66619447 | 66619355 | ID=Msa0135070-mRNA-1:exon:22781;Parent=Msa0135070-mRNA-1 |
| chr1_3 | exon | 66619865 | 66619939 | 66619865 | ID=Msa0135070-mRNA-1:exon:22782;Parent=Msa0135070-mRNA-1 |
| chr1_3 | exon | 66620148 | 66620210 | 66620148 | ID=Msa0135070-mRNA-1:exon:22783;Parent=Msa0135070-mRNA-1 |
| chr1_3 | exon | 66620441 | 66620550 | 66620441 | ID=Msa0135070-mRNA-1:exon:22784;Parent=Msa0135070-mRNA-1 |
| chr1_3 | exon | 66622042 | 66622448 | 66622042 | ID=Msa0135070-mRNA-1:exon:22785;Parent=Msa0135070-mRNA-1 |
| chr1_3 | five_prime_UTR | 66617736 | 66617845 | 66617736 | ID=Msa0135070-mRNA-1:five_prime_utr;Parent=Msa0135070-mRNA-1 |
| chr1_3 | CDS | 66617846 | 66618080 | 66617846 | ID=Msa0135070-mRNA-1:cds;Parent=Msa0135070-mRNA-1 |
| chr1_3 | CDS | 66618166 | 66618290 | 66618166 | ID=Msa0135070-mRNA-1:cds;Parent=Msa0135070-mRNA-1 |
| chr1_3 | CDS | 66618930 | 66619034 | 66618930 | ID=Msa0135070-mRNA-1:cds;Parent=Msa0135070-mRNA-1 |
| chr1_3 | CDS | 66619355 | 66619447 | 66619355 | ID=Msa0135070-mRNA-1:cds;Parent=Msa0135070-mRNA-1 |
| chr1_3 | CDS | 66619865 | 66619939 | 66619865 | ID=Msa0135070-mRNA-1:cds;Parent=Msa0135070-mRNA-1 |
| chr1_3 | CDS | 66620148 | 66620210 | 66620148 | ID=Msa0135070-mRNA-1:cds;Parent=Msa0135070-mRNA-1 |
| chr1_3 | CDS | 66620441 | 66620550 | 66620441 | ID=Msa0135070-mRNA-1:cds;Parent=Msa0135070-mRNA-1 |
| chr1_3 | CDS | 66622042 | 66622069 | 66622042 | ID=Msa0135070-mRNA-1:cds;Parent=Msa0135070-mRNA-1 |
| chr1_3 | three_prime_UTR | 66622070 | 66622448 | 66622070 | ID=Msa0135070-mRNA-1:three_prime_utr;Parent=Msa0135070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
