AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1456620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456620 MtrunA17_Chr4g0041121 92.135 356 12 2 1 355 1 341 0.0 663
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456620 AT2G31040.1 60.497 362 103 8 1 347 1 337 4.55e-147 419

Find 101 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGACCAAAGACTAAATT+TGG 0.119809 tig0037620:-13738 Msa1456620:exon
AGCTTTGGTGCCGGCTTTCT+TGG 0.168268 tig0037620:-15253 Msa1456620:CDS
TACACATCTCTTACCATAAT+TGG 0.232454 tig0037620:+16393 None:intergenic
GAAACCCCAAATTTAGTCTT+TGG 0.236449 tig0037620:+13732 None:intergenic
AGTCTTTGGTCGATATATTT+AGG 0.241504 tig0037620:+13746 None:intergenic
TGCCGGCTTTCTTGGTTCTT+TGG 0.245062 tig0037620:-15245 Msa1456620:CDS
AGGATTCTTGTTCCAGAATA+TGG 0.258629 tig0037620:-13874 Msa1456620:CDS
AAGTGCATAATTCCATATTC+TGG 0.258872 tig0037620:+13862 None:intergenic
TGTAAACAGGAAGTGCCTTC+TGG 0.265849 tig0037620:-16630 Msa1456620:intron
TAAGATAGTGAGAAACAAAA+TGG 0.274507 tig0037620:-18164 Msa1456620:exon
ATGTGATGTTTCGGGAATTA+AGG 0.274893 tig0037620:-15855 Msa1456620:CDS
CACCAAGCTTCGTAAGTATT+GGG 0.317586 tig0037620:-17966 Msa1456620:CDS
GATTCATATGAATGGTATAT+TGG 0.324237 tig0037620:+18252 None:intergenic
CCTACAGGATGTGATGTTTC+GGG 0.325233 tig0037620:-15863 Msa1456620:intron
AATTGGGCAGCCAAGATTAC+TGG 0.331100 tig0037620:-14188 Msa1456620:CDS
ATAGCGGCCCTTGCACCGTT+TGG 0.337199 tig0037620:+15181 None:intergenic
CATATCTATCTATAGATTAC+TGG 0.338490 tig0037620:-18230 Msa1456620:five_prime_UTR
GCAAATAGAGACACCAATTA+TGG 0.341609 tig0037620:-16406 Msa1456620:intron
TTTCTCACTATCTTATGTTC+TGG 0.353430 tig0037620:+18172 None:intergenic
ATCGACCAAAGACTAAATTT+GGG 0.357427 tig0037620:-13737 Msa1456620:exon
ACCTACAGGATGTGATGTTT+CGG 0.358028 tig0037620:-15864 Msa1456620:intron
ACCTTTGTTTGTCTTGGGTT+TGG 0.369123 tig0037620:+18064 None:intergenic
AGAATAACCTTTGTTTGTCT+TGG 0.372585 tig0037620:+18058 None:intergenic
GAATAACCTTTGTTTGTCTT+GGG 0.373162 tig0037620:+18059 None:intergenic
ATTACTGGTTCCTGTTGTAT+TGG 0.379401 tig0037620:-14173 Msa1456620:CDS
ACTGCCGTCAGTTGCAGCTT+TGG 0.380147 tig0037620:+16064 None:intergenic
ATACAGGGAGCAGTATATTA+AGG 0.383424 tig0037620:-15797 Msa1456620:intron
GTTAATTGCAGGGGAGCAAT+TGG 0.387442 tig0037620:-14205 Msa1456620:intron
TAGCGGCCCTTGCACCGTTT+GGG 0.390012 tig0037620:+15182 None:intergenic
TATTGAGCAGCCAATACTTC+GGG 0.403419 tig0037620:+15817 None:intergenic
GTAAACAGGAAGTGCCTTCT+GGG 0.406227 tig0037620:-16629 Msa1456620:intron
TAGCTTCTGATGATTATTTG+TGG 0.407042 tig0037620:-17922 Msa1456620:CDS
CCACCAAGCTTCGTAAGTAT+TGG 0.407069 tig0037620:-17967 Msa1456620:CDS
TTTGAAGGAGAAGATTGTTC+AGG 0.408297 tig0037620:+17857 None:intergenic
TCATCAGAAGCTAAAGGGTC+AGG 0.410342 tig0037620:+17932 None:intergenic
AAGTATTGGCTGCTCAATAC+AGG 0.415220 tig0037620:-15813 Msa1456620:CDS
TCTATTTGCTGCTGTACAAC+AGG 0.415950 tig0037620:+16420 None:intergenic
GCCGTCAGTTGCAGCTTTGG+TGG 0.426140 tig0037620:+16067 None:intergenic
CAAGCGCTTACATTGGGTAT+AGG 0.428081 tig0037620:-15626 Msa1456620:CDS
TTACGAAGCTTGGTGGTTGT+TGG 0.430101 tig0037620:+17974 None:intergenic
CATACCAGTAGACCATTTCA+TGG 0.443885 tig0037620:+18021 None:intergenic
ACAACAGGAACCAGTAATCT+TGG 0.444377 tig0037620:+14178 None:intergenic
TTTGGCGTATATCCGCATGC+TGG 0.445119 tig0037620:-15227 Msa1456620:CDS
CGAAGCTTGGTGGTTGTTGG+AGG 0.451253 tig0037620:+17977 None:intergenic
TGGTTATGATTTATAATCGA+TGG 0.453315 tig0037620:-14153 Msa1456620:CDS
AATAATCATCAGAAGCTAAA+GGG 0.460622 tig0037620:+17927 None:intergenic
ACCTACCTAGCTGCAATCTC+AGG 0.464426 tig0037620:+15566 None:intergenic
AAAGTGACAGCAAGAGAGTA+AGG 0.470284 tig0037620:-16136 Msa1456620:CDS
TGAACAATCTTCTCCTTCAA+AGG 0.475235 tig0037620:-17855 Msa1456620:intron
TTTGTTTGTCTTGGGTTTGG+TGG 0.476075 tig0037620:+18067 None:intergenic
TAAATCATAACCAATACAAC+AGG 0.476198 tig0037620:+14163 None:intergenic
TATTCCATTTGTCTTGCTCA+CGG 0.492378 tig0037620:+16093 None:intergenic
AAACCCATGAAATGGTCTAC+TGG 0.495036 tig0037620:-18025 Msa1456620:CDS
AAATAATCATCAGAAGCTAA+AGG 0.495271 tig0037620:+17926 None:intergenic
ATGTTCTGGTTCCTGTGTTG+TGG 0.495930 tig0037620:+18186 None:intergenic
CACGCCGTGAGCAAGACAAA+TGG 0.501285 tig0037620:-16097 Msa1456620:CDS
CATGAAATGGTCTACTGGTA+TGG 0.501507 tig0037620:-18020 Msa1456620:CDS
TGAATCATCCTTTCAAAATG+AGG 0.504403 tig0037620:+17884 None:intergenic
AGGTTGCAAGCGCTTACATT+GGG 0.506487 tig0037620:-15632 Msa1456620:CDS
GGTGATTACTGTTGCATCAA+AGG 0.508229 tig0037620:-13770 Msa1456620:CDS
CACTAAACCCAAACGGTGCA+AGG 0.509069 tig0037620:-15189 Msa1456620:CDS
ACCCCAATACTTACGAAGCT+TGG 0.512109 tig0037620:+17964 None:intergenic
TTAATTGCAGGGGAGCAATT+GGG 0.514999 tig0037620:-14204 Msa1456620:intron
CCAATACTTACGAAGCTTGG+TGG 0.515865 tig0037620:+17967 None:intergenic
TTGGCGTATATCCGCATGCT+GGG 0.516325 tig0037620:-15226 Msa1456620:CDS
ATAGATATGATTCATATGAA+TGG 0.516400 tig0037620:+18244 None:intergenic
TGGTCTACTGGTATGGCTCC+TGG 0.518814 tig0037620:-18013 Msa1456620:CDS
GAATTGATACCAATGCTAGT+TGG 0.520283 tig0037620:-13838 Msa1456620:CDS
CTTCGTAAGTATTGGGGTGG+TGG 0.523937 tig0037620:-17959 Msa1456620:CDS
AAGATAGTGAGAAACAAAAT+GGG 0.533275 tig0037620:-18163 Msa1456620:exon
ATAGAGTCATGAGCCTCGAC+AGG 0.533765 tig0037620:-16593 Msa1456620:CDS
TCGTGAAAATCCCGAAGTAT+TGG 0.538551 tig0037620:-15827 Msa1456620:CDS
CGCCAAAGAACCAAGAAAGC+CGG 0.543254 tig0037620:+15243 None:intergenic
ACATTGGGTATAGGTGGCGT+TGG 0.545773 tig0037620:-15617 Msa1456620:CDS
GAGGTTGCAAGCGCTTACAT+TGG 0.551750 tig0037620:-15633 Msa1456620:CDS
GTATTGAGCAGCCAATACTT+CGG 0.557898 tig0037620:+15816 None:intergenic
GAAGGAGAAGATTGTTCAGG+TGG 0.562283 tig0037620:+17860 None:intergenic
GCCACCAAAGCTGCAACTGA+CGG 0.578335 tig0037620:-16068 Msa1456620:CDS
CCGCATGCTGGGAAGTAGCA+TGG 0.585601 tig0037620:-15215 Msa1456620:CDS
GGAGGACCACCGTAGTCACC+AGG 0.586218 tig0037620:+17995 None:intergenic
ATACCAGTAGACCATTTCAT+GGG 0.589861 tig0037620:+18022 None:intergenic
TTGTCTTGCTCACGGCGTGT+TGG 0.591493 tig0037620:+16101 None:intergenic
GGTATGGCTCCTGGTGACTA+CGG 0.593975 tig0037620:-18004 Msa1456620:CDS
GATGATGAATCTTGTGACAT+TGG 0.594108 tig0037620:+18100 None:intergenic
CATCAGAAGCTAAAGGGTCA+GGG 0.595141 tig0037620:+17933 None:intergenic
AGTATTGGCTGCTCAATACA+GGG 0.596425 tig0037620:-15812 Msa1456620:CDS
ATGGACTCACTAAACCCAAA+CGG 0.611635 tig0037620:-15196 Msa1456620:CDS
ACCAAACCCAAGACAAACAA+AGG 0.615615 tig0037620:-18065 Msa1456620:CDS
ACTAAACCCAAACGGTGCAA+GGG 0.616920 tig0037620:-15188 Msa1456620:CDS
TCGACCAAAGACTAAATTTG+GGG 0.617007 tig0037620:-13736 Msa1456620:exon
CCATGCTACTTCCCAGCATG+CGG 0.623983 tig0037620:+15215 None:intergenic
GTGACAGCAAGAGAGTAAGG+TGG 0.625416 tig0037620:-16133 Msa1456620:CDS
GCGCTTACATTGGGTATAGG+TGG 0.629044 tig0037620:-15623 Msa1456620:CDS
ATTCTCCTGAGATTGCAGCT+AGG 0.629223 tig0037620:-15571 Msa1456620:intron
AACTATAGATTACTTGATAG+CGG 0.638773 tig0037620:+15165 None:intergenic
ACCAAGCTTCGTAAGTATTG+GGG 0.639162 tig0037620:-17965 Msa1456620:CDS
TTGTAGAGCGAGACCTGTCG+AGG 0.640320 tig0037620:+16580 None:intergenic
TTTAAGCTTAGAAACCCAGA+AGG 0.648797 tig0037620:+16615 None:intergenic
AAGCTTCGTAAGTATTGGGG+TGG 0.659164 tig0037620:-17962 Msa1456620:CDS
TCAATACATAGCCACAACAC+AGG 0.678048 tig0037620:-18197 Msa1456620:five_prime_UTR
ATGGCTCCTGGTGACTACGG+TGG 0.710999 tig0037620:-18001 Msa1456620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATACAGAAAATAAATT+GGG + tig0037620:14265-14284 None:intergenic 10.0%
!! TTATAATACAGAAAATAAAT+TGG + tig0037620:14266-14285 None:intergenic 10.0%
!! AATATCAATATTACTTAAAA+GGG + tig0037620:14307-14326 None:intergenic 10.0%
!! AAATATCAATATTACTTAAA+AGG + tig0037620:14308-14327 None:intergenic 10.0%
!!! TCAAGAAATTTTAATATAAT+TGG - tig0037620:14760-14779 Msa1456620:intron 10.0%
!!! AAATATTTTTTTTTGTAAAC+AGG - tig0037620:14960-14979 Msa1456620:intron 10.0%
!! CATTCTTATATATTACATAT+AGG + tig0037620:14238-14257 None:intergenic 15.0%
!! GTATTATAATTAGATTTGAT+TGG - tig0037620:14277-14296 Msa1456620:intron 15.0%
!! ATTGAAGTAAAAGTAAAATT+TGG + tig0037620:14366-14385 None:intergenic 15.0%
!! AAATAGTTATTAAACTCTTT+CGG + tig0037620:16561-16580 None:intergenic 15.0%
!! TGTCTATATAAATTTAATGT+AGG - tig0037620:16683-16702 Msa1456620:intron 15.0%
!! GTCTATATAAATTTAATGTA+GGG - tig0037620:16684-16703 Msa1456620:intron 15.0%
!!! TTCCTTAATCATTTAAATTT+TGG - tig0037620:16806-16825 Msa1456620:intron 15.0%
!!! TTCCTTAATCATTTAAATTT+TGG + tig0037620:16806-16825 None:intergenic 15.0%
!! AATTACTATTCTATTAATGA+AGG - tig0037620:17508-17527 Msa1456620:intron 15.0%
!! TCAAATTTAATATATAAGAG+TGG - tig0037620:17603-17622 Msa1456620:intron 15.0%
!! TATTTAGACATTATTACAAA+AGG + tig0037620:17984-18003 None:intergenic 15.0%
!! AATAATGTCTAAATATATCT+AGG - tig0037620:17989-18008 Msa1456620:CDS 15.0%
!! ATAATGTCTAAATATATCTA+GGG - tig0037620:17990-18009 Msa1456620:CDS 15.0%
!! ATAGATATGATTCATATGAA+TGG + tig0037620:13362-13381 None:intergenic 20.0%
!! AAAAAAGTAAAAACCTTTGA+AGG + tig0037620:13764-13783 None:intergenic 20.0%
!! AATTCAGTATTTAGTAGAAA+TGG - tig0037620:14464-14483 Msa1456620:intron 20.0%
!! ATGATTATGTGAATTAAATC+TGG + tig0037620:14507-14526 None:intergenic 20.0%
!! CAATAGATATAGATATTAAG+AGG + tig0037620:14595-14614 None:intergenic 20.0%
!! ATATCTATTGAACACATTTA+TGG - tig0037620:14605-14624 Msa1456620:intron 20.0%
!! TATCTATTGAACACATTTAT+GGG - tig0037620:14606-14625 Msa1456620:intron 20.0%
!!! TTTTGTTTAATTCCATGAAT+TGG - tig0037620:14928-14947 Msa1456620:intron 20.0%
!! GAATTAAATACTAAAGATCA+GGG + tig0037620:15329-15348 None:intergenic 20.0%
!! AGAATTAAATACTAAAGATC+AGG + tig0037620:15330-15349 None:intergenic 20.0%
!! TAAAAAGATAAATGAACCTT+TGG + tig0037620:15421-15440 None:intergenic 20.0%
!! TTACAAATTTAATGTCTATC+AGG - tig0037620:15438-15457 Msa1456620:intron 20.0%
!!! GTATCTAGTTTTTTACTTAT+TGG - tig0037620:15603-15622 Msa1456620:CDS 20.0%
!!! TTAACTTGGTTATTTTGAAT+TGG - tig0037620:16082-16101 Msa1456620:CDS 20.0%
!!! TTAACCATATTTGATAGTAT+AGG + tig0037620:16119-16138 None:intergenic 20.0%
!!! TACCTCTAAAGAATTTTTTA+AGG - tig0037620:16284-16303 Msa1456620:intron 20.0%
!! AACCTTAAAAAATTCTTTAG+AGG + tig0037620:16289-16308 None:intergenic 20.0%
!! TATATTATGGTAAAATATGC+TGG - tig0037620:16658-16677 Msa1456620:intron 20.0%
!! ATATTATGGTAAAATATGCT+GGG - tig0037620:16659-16678 Msa1456620:intron 20.0%
!! GACCAAAATTTAAATGATTA+AGG + tig0037620:17132-17151 None:intergenic 20.0%
!!! GTATTTTCGTCATATAAATT+TGG + tig0037620:16958-16977 None:intergenic 20.0%
!! GACCAAAATTTAAATGATTA+AGG - tig0037620:17132-17151 Msa1456620:intron 20.0%
!! GTAACTCAGATTTAATAAAT+AGG - tig0037620:17558-17577 Msa1456620:intron 20.0%
!! TTAAGAATCTTAATTACAAC+AGG - tig0037620:17933-17952 Msa1456620:CDS 20.0%
!! TAAGAATCTTAATTACAACA+GGG - tig0037620:17934-17953 Msa1456620:CDS 20.0%
!!! TGTAATCTTTTTTACTTTGA+TGG - tig0037620:18045-18064 Msa1456620:CDS 20.0%
!! ACAAAATACTAACTTATATG+TGG + tig0037620:18090-18109 None:intergenic 20.0%
! GATTCATATGAATGGTATAT+TGG + tig0037620:13354-13373 None:intergenic 25.0%
! CATATCTATCTATAGATTAC+TGG - tig0037620:13373-13392 Msa1456620:three_prime_UTR 25.0%
! TAAGATAGTGAGAAACAAAA+TGG - tig0037620:13439-13458 Msa1456620:three_prime_UTR 25.0%
! AAGATAGTGAGAAACAAAAT+GGG - tig0037620:13440-13459 Msa1456620:three_prime_UTR 25.0%
!!! CATTTCATGGGTTTTTTATT+GGG + tig0037620:13572-13591 None:intergenic 25.0%
! AATAATCATCAGAAGCTAAA+GGG + tig0037620:13679-13698 None:intergenic 25.0%
! AAATAATCATCAGAAGCTAA+AGG + tig0037620:13680-13699 None:intergenic 25.0%
!! ATTTTGTTCCTCATTTTGAA+AGG - tig0037620:13711-13730 Msa1456620:three_prime_UTR 25.0%
!! ACATTCTATAATTTTCCATC+TGG - tig0037620:13788-13807 Msa1456620:CDS 25.0%
!! CATTCTATAATTTTCCATCT+GGG - tig0037620:13789-13808 Msa1456620:CDS 25.0%
!!! CTGTTTTGTTGGAATTATTA+TGG - tig0037620:13828-13847 Msa1456620:CDS 25.0%
!! TGTTACTTGATTATTGTGTT+TGG - tig0037620:14031-14050 Msa1456620:intron 25.0%
!! ATATTGATATTTGAGACCAT+TGG - tig0037620:14316-14335 Msa1456620:intron 25.0%
!! ATTCATTCCAATTTTCAGAT+AGG - tig0037620:14674-14693 Msa1456620:intron 25.0%
! GAATGATACTAAACAATAGA+TGG - tig0037620:14702-14721 Msa1456620:intron 25.0%
! TAAAATTTCTTGAGTCAACA+AGG + tig0037620:14753-14772 None:intergenic 25.0%
!!! GCTATCGATTATTTTTTTGA+AGG - tig0037620:14891-14910 Msa1456620:intron 25.0%
!!! TCGATTATTTTTTTGAAGGA+AGG - tig0037620:14895-14914 Msa1456620:intron 25.0%
! TTGATTTATGAACTGTAGTA+TGG - tig0037620:15131-15150 Msa1456620:intron 25.0%
! TTCATGAGTATTTAATTCAG+AGG - tig0037620:15273-15292 Msa1456620:intron 25.0%
! TCATGAGTATTTAATTCAGA+GGG - tig0037620:15274-15293 Msa1456620:intron 25.0%
!! TGAAAAACAAAAAAAGCACA+TGG - tig0037620:15378-15397 Msa1456620:intron 25.0%
! CTTATATAAGTGTATAACCT+AGG - tig0037620:15639-15658 Msa1456620:CDS 25.0%
!! TTTGGGTTAAAAGTAAACTA+TGG + tig0037620:15689-15708 None:intergenic 25.0%
!! AATCGTCAAGTTATCATTTT+GGG + tig0037620:15706-15725 None:intergenic 25.0%
! TTCTGTTCCTAAACTTAATT+TGG - tig0037620:15931-15950 Msa1456620:intron 25.0%
! TGAAAAGCCAAATTAAGTTT+AGG + tig0037620:15941-15960 None:intergenic 25.0%
! AACTATAGATTACTTGATAG+CGG + tig0037620:16441-16460 None:intergenic 25.0%
! ATATTATTCAAGATGTGAAC+AGG - tig0037620:16629-16648 Msa1456620:intron 25.0%
! TATTATTCAAGATGTGAACA+GGG - tig0037620:16630-16649 Msa1456620:intron 25.0%
! TATTATGGTAAAATATGCTG+GGG - tig0037620:16660-16679 Msa1456620:intron 25.0%
! TAAATGATTAAGGAATGCAA+GGG + tig0037620:17142-17161 None:intergenic 25.0%
! TTAAATGATTAAGGAATGCA+AGG + tig0037620:17141-17160 None:intergenic 25.0%
! TTAAATGATTAAGGAATGCA+AGG - tig0037620:17141-17160 Msa1456620:intron 25.0%
! TAAATGATTAAGGAATGCAA+GGG - tig0037620:17142-17161 Msa1456620:intron 25.0%
! GCTCACAAGTATAATTATTA+AGG + tig0037620:17245-17264 None:intergenic 25.0%
! GAAAAATGAAACAATGTTCA+TGG + tig0037620:17332-17351 None:intergenic 25.0%
! TAAATCATAACCAATACAAC+AGG + tig0037620:17443-17462 None:intergenic 25.0%
! TGGTTATGATTTATAATCGA+TGG - tig0037620:17450-17469 Msa1456620:intron 25.0%
! ATAGGAATGAGAATTAAGAA+TGG - tig0037620:17576-17595 Msa1456620:intron 25.0%
!! TTAACCAATATTCTAGGTTT+TGG + tig0037620:17670-17689 None:intergenic 25.0%
! AAGAATCTTAATTACAACAG+GGG - tig0037620:17935-17954 Msa1456620:CDS 25.0%
TTTCTCACTATCTTATGTTC+TGG + tig0037620:13434-13453 None:intergenic 30.0%
! GAATAACCTTTGTTTGTCTT+GGG + tig0037620:13547-13566 None:intergenic 30.0%
! AGAATAACCTTTGTTTGTCT+TGG + tig0037620:13548-13567 None:intergenic 30.0%
!!! CCATTTCATGGGTTTTTTAT+TGG + tig0037620:13573-13592 None:intergenic 30.0%
CCAATAAAAAACCCATGAAA+TGG - tig0037620:13570-13589 Msa1456620:intron 30.0%
TAGCTTCTGATGATTATTTG+TGG - tig0037620:13681-13700 Msa1456620:three_prime_UTR 30.0%
TGAATCATCCTTTCAAAATG+AGG + tig0037620:13722-13741 None:intergenic 30.0%
ATTGATTGATGAATTGCTTG+TGG - tig0037620:13859-13878 Msa1456620:CDS 30.0%
TTGATTGATGAATTGCTTGT+GGG - tig0037620:13860-13879 Msa1456620:CDS 30.0%
ATGATGATTGTGTATGTACA+CGG - tig0037620:13905-13924 Msa1456620:intron 30.0%
! ATTTTACTCCTTTGTTCCAA+TGG + tig0037620:14335-14354 None:intergenic 30.0%
AAGAAAGACTAATAAACGCA+TGG + tig0037620:14405-14424 None:intergenic 30.0%
TTACATAATGATACTCTGTG+AGG - tig0037620:14424-14443 Msa1456620:intron 30.0%
!! AGATATTAAGAGGCATTTGA+TGG + tig0037620:14585-14604 None:intergenic 30.0%
! AACAGTTACTTTGTTTAGCA+TGG - tig0037620:14646-14665 Msa1456620:intron 30.0%
TCTGATTCCTATCTGAAAAT+TGG + tig0037620:14684-14703 None:intergenic 30.0%
! TGGTTTTTGATAGAACATCA+TGG - tig0037620:14780-14799 Msa1456620:intron 30.0%
ACTCAAGATATCTTGTTGAA+TGG - tig0037620:14869-14888 Msa1456620:intron 30.0%
TTTATGTCAGTACCAATTCA+TGG + tig0037620:14943-14962 None:intergenic 30.0%
TACACATCTCTTACCATAAT+TGG + tig0037620:15213-15232 None:intergenic 30.0%
!!! TTGTTGTGTTGTTTTTCCAA+AGG - tig0037620:15402-15421 Msa1456620:intron 30.0%
TATAAGTGTATAACCTAGGA+CGG - tig0037620:15643-15662 Msa1456620:CDS 30.0%
! CAATCGTCAAGTTATCATTT+TGG + tig0037620:15707-15726 None:intergenic 30.0%
TGTTGATATTAACTACCTAC+AGG - tig0037620:15725-15744 Msa1456620:intron 30.0%
! TCTTCTACTACTGATTAACT+TGG - tig0037620:16068-16087 Msa1456620:CDS 30.0%
! TATTTGATAGTATAGGTAGC+AGG + tig0037620:16112-16131 None:intergenic 30.0%
GCTACCTATACTATCAAATA+TGG - tig0037620:16112-16131 Msa1456620:CDS 30.0%
ATTTATCCAATATCCCTCAA+TGG + tig0037620:16193-16212 None:intergenic 30.0%
! TTCTTTCATGTTTTCAGCTT+TGG - tig0037620:16335-16354 Msa1456620:intron 30.0%
GAACAGGGAGAAATATATTA+TGG - tig0037620:16645-16664 Msa1456620:intron 30.0%
AATGTAGGGTATAGTCATTT+AGG - tig0037620:16698-16717 Msa1456620:intron 30.0%
! TGTTTTTCATCCTTGCAATT+AGG - tig0037620:16729-16748 Msa1456620:intron 30.0%
! GTTTTTCATCCTTGCAATTA+GGG - tig0037620:16730-16749 Msa1456620:intron 30.0%
! TTTTTCATCCTTGCAATTAG+GGG - tig0037620:16731-16750 Msa1456620:intron 30.0%
ATTAGGGGTCGTTTAAAAAT+TGG - tig0037620:16746-16765 Msa1456620:intron 30.0%
GACCAAATTTATATCCATCT+GGG + tig0037620:16990-17009 None:intergenic 30.0%
AGACCAAATTTATATCCATC+TGG + tig0037620:16991-17010 None:intergenic 30.0%
ATTAGGGGTCGTTTAAAAAA+TGG + tig0037620:17197-17216 None:intergenic 30.0%
! TTTTTCATCCTTGCAATTAG+GGG + tig0037620:16731-16750 None:intergenic 30.0%
! GTTTTTCATCCTTGCAATTA+GGG + tig0037620:16730-16749 None:intergenic 30.0%
! TGTTTTTCATCCTTGCAATT+AGG + tig0037620:16729-16748 None:intergenic 30.0%
TTCTCCAAAACCTAGAATAT+TGG - tig0037620:17663-17682 Msa1456620:intron 30.0%
! CCTAGAATATTGGTTAAACT+CGG - tig0037620:17673-17692 Msa1456620:intron 30.0%
AAGTGCATAATTCCATATTC+TGG + tig0037620:17744-17763 None:intergenic 30.0%
AGTCTTTGGTCGATATATTT+AGG + tig0037620:17860-17879 None:intergenic 30.0%
TATCGACCAAAGACTAAATT+TGG - tig0037620:17865-17884 Msa1456620:CDS 30.0%
ATCGACCAAAGACTAAATTT+GGG - tig0037620:17866-17885 Msa1456620:CDS 30.0%
GATGATGAATCTTGTGACAT+TGG + tig0037620:13506-13525 None:intergenic 35.0%
ATACCAGTAGACCATTTCAT+GGG + tig0037620:13584-13603 None:intergenic 35.0%
TTTGAAGGAGAAGATTGTTC+AGG + tig0037620:13749-13768 None:intergenic 35.0%
TGAACAATCTTCTCCTTCAA+AGG - tig0037620:13748-13767 Msa1456620:CDS 35.0%
!!! TTGAATTGGTGCTGTTTTGT+TGG - tig0037620:13817-13836 Msa1456620:CDS 35.0%
GAAAGGGATTAGGATTAAGT+TGG + tig0037620:14139-14158 None:intergenic 35.0%
! GTTACTTGTTAGGCTTGAAA+GGG + tig0037620:14155-14174 None:intergenic 35.0%
! TGTTACTTGTTAGGCTTGAA+AGG + tig0037620:14156-14175 None:intergenic 35.0%
! ATTTGAGACCATTGGAACAA+AGG - tig0037620:14324-14343 Msa1456620:intron 35.0%
TAATGATACTCTGTGAGGAA+AGG - tig0037620:14429-14448 Msa1456620:intron 35.0%
ATTGAACACATTTATGGGTG+TGG - tig0037620:14611-14630 Msa1456620:intron 35.0%
TTTATGGGTGTGGAAATGTA+TGG - tig0037620:14621-14640 Msa1456620:intron 35.0%
! CAAAATTTTTGTCCCAATGC+AGG + tig0037620:14830-14849 None:intergenic 35.0%
! CTGCATTGGGACAAAAATTT+TGG - tig0037620:14828-14847 Msa1456620:intron 35.0%
!!! AAAATTTTGGTTGCTGGTAG+TGG - tig0037620:14841-14860 Msa1456620:intron 35.0%
TTTAAGCTTAGAAACCCAGA+AGG + tig0037620:14991-15010 None:intergenic 35.0%
GCAAATAGAGACACCAATTA+TGG - tig0037620:15197-15216 Msa1456620:CDS 35.0%
TATTCCATTTGTCTTGCTCA+CGG + tig0037620:15513-15532 None:intergenic 35.0%
! TAAACTATGGATTGAGCTCT+AGG + tig0037620:15676-15695 None:intergenic 35.0%
ATGTGATGTTTCGGGAATTA+AGG - tig0037620:15748-15767 Msa1456620:intron 35.0%
ATACAGGGAGCAGTATATTA+AGG - tig0037620:15806-15825 Msa1456620:CDS 35.0%
CAATGTCGCAATGAATGAAA+AGG + tig0037620:15889-15908 None:intergenic 35.0%
! TGGCTTTTCAGTTAAAGAAG+AGG - tig0037620:15951-15970 Msa1456620:intron 35.0%
ATGTTTCCATTGAGGGATAT+TGG - tig0037620:16184-16203 Msa1456620:intron 35.0%
!! TCATTTTTCACGTTGTTCGT+TGG - tig0037620:17343-17362 Msa1456620:intron 35.0%
AACTTGTGGATGTTAATTGC+AGG - tig0037620:17387-17406 Msa1456620:intron 35.0%
ACTTGTGGATGTTAATTGCA+GGG - tig0037620:17388-17407 Msa1456620:intron 35.0%
!! ATTACTGGTTCCTGTTGTAT+TGG - tig0037620:17430-17449 Msa1456620:intron 35.0%
GAGTGAATGAGAGTTAAGAA+TGG - tig0037620:17536-17555 Msa1456620:intron 35.0%
!!! GTTTTGGAGAAACTAAAGCT+AGG + tig0037620:17654-17673 None:intergenic 35.0%
CCGAGTTTAACCAATATTCT+AGG + tig0037620:17676-17695 None:intergenic 35.0%
!!! GGTGTTTTAACTGCTTAACA+AGG - tig0037620:17694-17713 Msa1456620:intron 35.0%
AGGATTCTTGTTCCAGAATA+TGG - tig0037620:17729-17748 Msa1456620:intron 35.0%
GAATTGATACCAATGCTAGT+TGG - tig0037620:17765-17784 Msa1456620:intron 35.0%
GTGAAAAAACCAACTAGCAT+TGG + tig0037620:17777-17796 None:intergenic 35.0%
! AACTTTTGCACAAGCTATAG+AGG - tig0037620:17809-17828 Msa1456620:intron 35.0%
TCGACCAAAGACTAAATTTG+GGG - tig0037620:17867-17886 Msa1456620:CDS 35.0%
! GAAACCCCAAATTTAGTCTT+TGG + tig0037620:17874-17893 None:intergenic 35.0%
TCAATACATAGCCACAACAC+AGG - tig0037620:13406-13425 Msa1456620:three_prime_UTR 40.0%
TTTGTTTGTCTTGGGTTTGG+TGG + tig0037620:13539-13558 None:intergenic 40.0%
ACCAAACCCAAGACAAACAA+AGG - tig0037620:13538-13557 Msa1456620:intron 40.0%
! ACCTTTGTTTGTCTTGGGTT+TGG + tig0037620:13542-13561 None:intergenic 40.0%
AAACCCATGAAATGGTCTAC+TGG - tig0037620:13578-13597 Msa1456620:intron 40.0%
CATACCAGTAGACCATTTCA+TGG + tig0037620:13585-13604 None:intergenic 40.0%
CATGAAATGGTCTACTGGTA+TGG - tig0037620:13583-13602 Msa1456620:intron 40.0%
CACCAAGCTTCGTAAGTATT+GGG - tig0037620:13637-13656 Msa1456620:intron 40.0%
! ACCAAGCTTCGTAAGTATTG+GGG - tig0037620:13638-13657 Msa1456620:intron 40.0%
TGTTAGGCTTGAAAGGGATT+AGG + tig0037620:14149-14168 None:intergenic 40.0%
! CTCAGTGCTTGTTACTTGTT+AGG + tig0037620:14165-14184 None:intergenic 40.0%
CATTGAACCAAACCTGCATT+GGG - tig0037620:14815-14834 Msa1456620:intron 40.0%
! TTTTTGTCCCAATGCAGGTT+TGG + tig0037620:14825-14844 None:intergenic 40.0%
!!! GGGACAAAAATTTTGGTTGC+TGG - tig0037620:14835-14854 Msa1456620:intron 40.0%
! TCTATTTGCTGCTGTACAAC+AGG + tig0037620:15186-15205 None:intergenic 40.0%
AAAGTGACAGCAAGAGAGTA+AGG - tig0037620:15467-15486 Msa1456620:intron 40.0%
ACCTACAGGATGTGATGTTT+CGG - tig0037620:15739-15758 Msa1456620:intron 40.0%
TCGTGAAAATCCCGAAGTAT+TGG - tig0037620:15776-15795 Msa1456620:intron 40.0%
TATTGAGCAGCCAATACTTC+GGG + tig0037620:15789-15808 None:intergenic 40.0%
GTATTGAGCAGCCAATACTT+CGG + tig0037620:15790-15809 None:intergenic 40.0%
!! AAGTATTGGCTGCTCAATAC+AGG - tig0037620:15790-15809 Msa1456620:intron 40.0%
!! AGTATTGGCTGCTCAATACA+GGG - tig0037620:15791-15810 Msa1456620:intron 40.0%
AGGTACTCAACATTGTTGTC+TGG - tig0037620:15826-15845 Msa1456620:CDS 40.0%
ACTCAACATTGTTGTCTGGT+TGG - tig0037620:15830-15849 Msa1456620:CDS 40.0%
TCAGTGTCATGTTTCCATTG+AGG - tig0037620:16176-16195 Msa1456620:intron 40.0%
CAGTGTCATGTTTCCATTGA+GGG - tig0037620:16177-16196 Msa1456620:intron 40.0%
ATGGACTCACTAAACCCAAA+CGG - tig0037620:16407-16426 Msa1456620:CDS 40.0%
TTAAACGACCCCTAATTGCA+AGG + tig0037620:17201-17220 None:intergenic 40.0%
GAATGCAAGGGTAATTTCCA+AGG + tig0037620:17154-17173 None:intergenic 40.0%
AGTAATCAGATGACATGGCA+CGG + tig0037620:17093-17112 None:intergenic 40.0%
ACGTCAGTAATCAGATGACA+TGG + tig0037620:17088-17107 None:intergenic 40.0%
ATGTCATCTGATTACTGACG+TGG - tig0037620:16854-16873 Msa1456620:intron 40.0%
AATTTGGTCTCATCTGCAGA+GGG + tig0037620:17001-17020 None:intergenic 40.0%
AAATTTGGTCTCATCTGCAG+AGG + tig0037620:17000-17019 None:intergenic 40.0%
AATTTATATCCATCTGGGCG+TGG + tig0037620:16985-17004 None:intergenic 40.0%
CGCCCAGATGGATATAAATT+TGG - tig0037620:16985-17004 Msa1456620:intron 40.0%
AAATTTGGTCTCATCTGCAG+AGG - tig0037620:17000-17019 Msa1456620:intron 40.0%
AATTTGGTCTCATCTGCAGA+GGG - tig0037620:17001-17020 Msa1456620:intron 40.0%
ATGTCATCTGATTACTGACG+TGG + tig0037620:16854-16873 None:intergenic 40.0%
ACGTCAGTAATCAGATGACA+TGG - tig0037620:17088-17107 Msa1456620:intron 40.0%
AGTAATCAGATGACATGGCA+CGG - tig0037620:17093-17112 Msa1456620:intron 40.0%
GAATGCAAGGGTAATTTCCA+AGG - tig0037620:17154-17173 Msa1456620:intron 40.0%
TTAAACGACCCCTAATTGCA+AGG - tig0037620:17201-17220 Msa1456620:intron 40.0%
CACATGTGAGAACACTTGTT+AGG - tig0037620:17280-17299 Msa1456620:intron 40.0%
TTCGTTGGCATAGATAACAG+AGG - tig0037620:17358-17377 Msa1456620:intron 40.0%
AACAGAGGCTTAACAACTTG+TGG - tig0037620:17373-17392 Msa1456620:intron 40.0%
CTTGTGGATGTTAATTGCAG+GGG - tig0037620:17389-17408 Msa1456620:intron 40.0%
TTAATTGCAGGGGAGCAATT+GGG - tig0037620:17399-17418 Msa1456620:intron 40.0%
ACAACAGGAACCAGTAATCT+TGG + tig0037620:17428-17447 None:intergenic 40.0%
! GTCCTCTTTTGATATGCGAT+TGG - tig0037620:17482-17501 Msa1456620:intron 40.0%
CTCCAATCGCATATCAAAAG+AGG + tig0037620:17487-17506 None:intergenic 40.0%
! TAACAAGGCTGTTTCAATGC+AGG - tig0037620:17709-17728 Msa1456620:intron 40.0%
! TTTTGCACAAGCTATAGAGG+AGG - tig0037620:17812-17831 Msa1456620:intron 40.0%
GGTGATTACTGTTGCATCAA+AGG - tig0037620:17833-17852 Msa1456620:intron 40.0%
! CATGTGTTGTCACTTCAAAG+AGG + tig0037620:18023-18042 None:intergenic 40.0%
!! ATGTTCTGGTTCCTGTGTTG+TGG + tig0037620:13420-13439 None:intergenic 45.0%
! TTACGAAGCTTGGTGGTTGT+TGG + tig0037620:13632-13651 None:intergenic 45.0%
CCAATACTTACGAAGCTTGG+TGG + tig0037620:13639-13658 None:intergenic 45.0%
CCACCAAGCTTCGTAAGTAT+TGG - tig0037620:13636-13655 Msa1456620:intron 45.0%
ACCCCAATACTTACGAAGCT+TGG + tig0037620:13642-13661 None:intergenic 45.0%
!! AAGCTTCGTAAGTATTGGGG+TGG - tig0037620:13641-13660 Msa1456620:intron 45.0%
CATCAGAAGCTAAAGGGTCA+GGG + tig0037620:13673-13692 None:intergenic 45.0%
TCATCAGAAGCTAAAGGGTC+AGG + tig0037620:13674-13693 None:intergenic 45.0%
GAAGGAGAAGATTGTTCAGG+TGG + tig0037620:13746-13765 None:intergenic 45.0%
CCAATTCAAACACACCCAGA+TGG + tig0037620:13806-13825 None:intergenic 45.0%
CCATCTGGGTGTGTTTGAAT+TGG - tig0037620:13803-13822 Msa1456620:CDS 45.0%
!! CACTTTCGATCAGAAGTGTC+AGG - tig0037620:13994-14013 Msa1456620:intron 45.0%
! CCAATGCAGGTTTGGTTCAA+TGG + tig0037620:14817-14836 None:intergenic 45.0%
CCATTGAACCAAACCTGCAT+TGG - tig0037620:14814-14833 Msa1456620:intron 45.0%
!!! ATTTTGGTTGCTGGTAGTGG+TGG - tig0037620:14844-14863 Msa1456620:intron 45.0%
!! TGTAAACAGGAAGTGCCTTC+TGG - tig0037620:14973-14992 Msa1456620:intron 45.0%
!! GTAAACAGGAAGTGCCTTCT+GGG - tig0037620:14974-14993 Msa1456620:intron 45.0%
CCTACAGGATGTGATGTTTC+GGG - tig0037620:15740-15759 Msa1456620:intron 45.0%
AGGTTGCAAGCGCTTACATT+GGG - tig0037620:15971-15990 Msa1456620:intron 45.0%
CAAGCGCTTACATTGGGTAT+AGG - tig0037620:15977-15996 Msa1456620:intron 45.0%
ATTCTCCTGAGATTGCAGCT+AGG - tig0037620:16032-16051 Msa1456620:intron 45.0%
!! CATGTTTTCAGCTTTGGTGC+CGG - tig0037620:16341-16360 Msa1456620:intron 45.0%
ACTAAACCCAAACGGTGCAA+GGG - tig0037620:16415-16434 Msa1456620:CDS 45.0%
! TCCAAGGATTAGCGAATGCT+GGG + tig0037620:16773-16792 None:intergenic 45.0%
! TTCCAAGGATTAGCGAATGC+TGG + tig0037620:17169-17188 None:intergenic 45.0%
! TGACATGGCACGGATTAACT+GGG + tig0037620:17103-17122 None:intergenic 45.0%
! ATGACATGGCACGGATTAAC+TGG + tig0037620:17102-17121 None:intergenic 45.0%
! ATGACATGGCACGGATTAAC+TGG - tig0037620:17102-17121 Msa1456620:intron 45.0%
! TGACATGGCACGGATTAACT+GGG - tig0037620:17103-17122 Msa1456620:intron 45.0%
! TTCCAAGGATTAGCGAATGC+AGG - tig0037620:17169-17188 Msa1456620:intron 45.0%
! TCCAAGGATTAGCGAATGCA+GGG - tig0037620:17170-17189 Msa1456620:intron 45.0%
GTTAATTGCAGGGGAGCAAT+TGG - tig0037620:17398-17417 Msa1456620:intron 45.0%
AATTGGGCAGCCAAGATTAC+TGG - tig0037620:17415-17434 Msa1456620:intron 45.0%
!! TCAAAAATATATATTAATAA+GGG + tig0037620:15252-15271 None:intergenic 5.0%
!! ATCAAAAATATATATTAATA+AGG + tig0037620:15253-15272 None:intergenic 5.0%
!! CTTCGTAAGTATTGGGGTGG+TGG - tig0037620:13644-13663 Msa1456620:intron 50.0%
ATAGAGTCATGAGCCTCGAC+AGG - tig0037620:15010-15029 Msa1456620:intron 50.0%
GTGACAGCAAGAGAGTAAGG+TGG - tig0037620:15470-15489 Msa1456620:intron 50.0%
TGTATAACCTAGGACGGCGT+AGG - tig0037620:15649-15668 Msa1456620:intron 50.0%
CCCGAAACATCACATCCTGT+AGG + tig0037620:15743-15762 None:intergenic 50.0%
GAGGTTGCAAGCGCTTACAT+TGG - tig0037620:15970-15989 Msa1456620:intron 50.0%
GCGCTTACATTGGGTATAGG+TGG - tig0037620:15980-15999 Msa1456620:intron 50.0%
ACATTGGGTATAGGTGGCGT+TGG - tig0037620:15986-16005 Msa1456620:intron 50.0%
TCCTGAGATTGCAGCTAGGT+AGG - tig0037620:16036-16055 Msa1456620:intron 50.0%
ACCTACCTAGCTGCAATCTC+AGG + tig0037620:16040-16059 None:intergenic 50.0%
!! TGCCGGCTTTCTTGGTTCTT+TGG - tig0037620:16358-16377 Msa1456620:intron 50.0%
CGCCAAAGAACCAAGAAAGC+CGG + tig0037620:16363-16382 None:intergenic 50.0%
TTTGGCGTATATCCGCATGC+TGG - tig0037620:16376-16395 Msa1456620:intron 50.0%
TTGGCGTATATCCGCATGCT+GGG - tig0037620:16377-16396 Msa1456620:intron 50.0%
CACTAAACCCAAACGGTGCA+AGG - tig0037620:16414-16433 Msa1456620:CDS 50.0%
TCCCAGCATTCGCTAATCCT+TGG - tig0037620:16769-16788 Msa1456620:intron 50.0%
! GCACGGATTAACTGGGTCAA+AGG + tig0037620:17110-17129 None:intergenic 50.0%
ACTTGCCAGCTCAACCATCT+GGG - tig0037620:16896-16915 Msa1456620:intron 50.0%
ATATCCATCTGGGCGTGGAA+GGG + tig0037620:16980-16999 None:intergenic 50.0%
TATATCCATCTGGGCGTGGA+AGG + tig0037620:16981-17000 None:intergenic 50.0%
ACTTGCCAGCTCAACCATCT+GGG + tig0037620:16896-16915 None:intergenic 50.0%
! GCACGGATTAACTGGGTCAA+AGG - tig0037620:17110-17129 Msa1456620:intron 50.0%
TCCCTGCATTCGCTAATCCT+TGG + tig0037620:17174-17193 None:intergenic 50.0%
TGGTCTACTGGTATGGCTCC+TGG - tig0037620:13590-13609 Msa1456620:intron 55.0%
GGTATGGCTCCTGGTGACTA+CGG - tig0037620:13599-13618 Msa1456620:intron 55.0%
! CGAAGCTTGGTGGTTGTTGG+AGG + tig0037620:13629-13648 None:intergenic 55.0%
TTGTAGAGCGAGACCTGTCG+AGG + tig0037620:15026-15045 None:intergenic 55.0%
TTGTCTTGCTCACGGCGTGT+TGG + tig0037620:15505-15524 None:intergenic 55.0%
CACGCCGTGAGCAAGACAAA+TGG - tig0037620:15506-15525 Msa1456620:intron 55.0%
GCCACCAAAGCTGCAACTGA+CGG - tig0037620:15535-15554 Msa1456620:intron 55.0%
ACTGCCGTCAGTTGCAGCTT+TGG + tig0037620:15542-15561 None:intergenic 55.0%
!! AGCTTTGGTGCCGGCTTTCT+TGG - tig0037620:16350-16369 Msa1456620:intron 55.0%
! CCATGCTACTTCCCAGCATG+CGG + tig0037620:16391-16410 None:intergenic 55.0%
CTGACGTGGCGCTACTAAAC+TGG - tig0037620:16868-16887 Msa1456620:intron 55.0%
CACTTGCCAGCTCAACCATC+TGG - tig0037620:16895-16914 Msa1456620:intron 55.0%
AATACCCTTCCACGCCCAGA+TGG - tig0037620:16973-16992 Msa1456620:intron 55.0%
CACTTGCCAGCTCAACCATC+TGG + tig0037620:16895-16914 None:intergenic 55.0%
CTGACGTGGCGCTACTAAAC+TGG + tig0037620:16868-16887 None:intergenic 55.0%
ATGGCTCCTGGTGACTACGG+TGG - tig0037620:13602-13621 Msa1456620:intron 60.0%
! GCCGTCAGTTGCAGCTTTGG+TGG + tig0037620:15539-15558 None:intergenic 60.0%
TCTAGGTCCTACGCCGTCCT+AGG + tig0037620:15659-15678 None:intergenic 60.0%
CCGCATGCTGGGAAGTAGCA+TGG - tig0037620:16388-16407 Msa1456620:intron 60.0%
TAGCGGCCCTTGCACCGTTT+GGG + tig0037620:16424-16443 None:intergenic 60.0%
ATAGCGGCCCTTGCACCGTT+TGG + tig0037620:16425-16444 None:intergenic 60.0%
CAGCTCAACCATCTGGGCGT+GGG - tig0037620:16902-16921 Msa1456620:intron 60.0%
CAACCATCTGGGCGTGGGAA+TGG - tig0037620:16907-16926 Msa1456620:intron 60.0%
TGTCCATTCCCACGCCCAGA+TGG + tig0037620:17030-17049 None:intergenic 60.0%
TGTCCATTCCCACGCCCAGA+TGG - tig0037620:17030-17049 Msa1456620:intron 60.0%
CAACCATCTGGGCGTGGGAA+TGG + tig0037620:16907-16926 None:intergenic 60.0%
CAGCTCAACCATCTGGGCGT+GGG + tig0037620:16902-16921 None:intergenic 60.0%
GGAGGACCACCGTAGTCACC+AGG + tig0037620:13611-13630 None:intergenic 65.0%
CCACGCCCAGATGGTTGAGC+TGG + tig0037620:17039-17058 None:intergenic 65.0%
CCAGCTCAACCATCTGGGCG+TGG - tig0037620:16901-16920 Msa1456620:intron 65.0%
CCAGCTCAACCATCTGGGCG+TGG + tig0037620:16901-16920 None:intergenic 65.0%
CCACGCCCAGATGGTTGAGC+TGG - tig0037620:17039-17058 Msa1456620:intron 65.0%
Chromosome Type Strat End Strand Name
tig0037620 gene 13349 18276 13349 ID=Msa1456620;Name=Msa1456620
tig0037620 mRNA 13349 18276 13349 ID=Msa1456620-mRNA-1;Parent=Msa1456620;Name=Msa1456620-mRNA-1;_AED=0.09;_eAED=0.10;_QI=109|0.88|0.9|1|0.88|0.8|10|254|355
tig0037620 exon 13349 13534 13349 ID=Msa1456620-mRNA-1:exon:20827;Parent=Msa1456620-mRNA-1
tig0037620 exon 13676 13894 13676 ID=Msa1456620-mRNA-1:exon:20826;Parent=Msa1456620-mRNA-1
tig0037620 exon 14148 14216 14148 ID=Msa1456620-mRNA-1:exon:20825;Parent=Msa1456620-mRNA-1
tig0037620 exon 15178 15273 15178 ID=Msa1456620-mRNA-1:exon:20824;Parent=Msa1456620-mRNA-1
tig0037620 exon 15572 15663 15572 ID=Msa1456620-mRNA-1:exon:20823;Parent=Msa1456620-mRNA-1
tig0037620 exon 15798 15878 15798 ID=Msa1456620-mRNA-1:exon:20822;Parent=Msa1456620-mRNA-1
tig0037620 exon 16064 16165 16064 ID=Msa1456620-mRNA-1:exon:20821;Parent=Msa1456620-mRNA-1
tig0037620 exon 16407 16476 16407 ID=Msa1456620-mRNA-1:exon:20820;Parent=Msa1456620-mRNA-1
tig0037620 exon 16549 16643 16549 ID=Msa1456620-mRNA-1:exon:20819;Parent=Msa1456620-mRNA-1
tig0037620 exon 17856 18276 17856 ID=Msa1456620-mRNA-1:exon:20818;Parent=Msa1456620-mRNA-1
tig0037620 five_prime_UTR 18168 18276 18168 ID=Msa1456620-mRNA-1:five_prime_utr;Parent=Msa1456620-mRNA-1
tig0037620 CDS 17856 18167 17856 ID=Msa1456620-mRNA-1:cds;Parent=Msa1456620-mRNA-1
tig0037620 CDS 16549 16643 16549 ID=Msa1456620-mRNA-1:cds;Parent=Msa1456620-mRNA-1
tig0037620 CDS 16407 16476 16407 ID=Msa1456620-mRNA-1:cds;Parent=Msa1456620-mRNA-1
tig0037620 CDS 16064 16165 16064 ID=Msa1456620-mRNA-1:cds;Parent=Msa1456620-mRNA-1
tig0037620 CDS 15798 15878 15798 ID=Msa1456620-mRNA-1:cds;Parent=Msa1456620-mRNA-1
tig0037620 CDS 15572 15663 15572 ID=Msa1456620-mRNA-1:cds;Parent=Msa1456620-mRNA-1
tig0037620 CDS 15178 15273 15178 ID=Msa1456620-mRNA-1:cds;Parent=Msa1456620-mRNA-1
tig0037620 CDS 14148 14216 14148 ID=Msa1456620-mRNA-1:cds;Parent=Msa1456620-mRNA-1
tig0037620 CDS 13744 13894 13744 ID=Msa1456620-mRNA-1:cds;Parent=Msa1456620-mRNA-1
tig0037620 three_prime_UTR 13676 13743 13676 ID=Msa1456620-mRNA-1:three_prime_utr;Parent=Msa1456620-mRNA-1
tig0037620 three_prime_UTR 13349 13534 13349 ID=Msa1456620-mRNA-1:three_prime_utr;Parent=Msa1456620-mRNA-1
Gene Sequence

>Msa1456620

ATGGGAATTATGAACTACTACAATTGTGTAACATGTGCAGCAACACCAATGTCACAAGATTCATCATCATCATCATTACCACCAAACCCAAGACAAACAAAGGTTATTCTTCCCAATAAAAAACCCATGAAATGGTCTACTGGTATGGCTCCTGGTGACTACGGTGGTCCTCCAACAACCACCAAGCTTCGTAAGTATTGGGGTGGTGGAGACCCTGACCCTTTAGCTTCTGATGATTATTTGTGGAACAAAGATTTTGTTCCTCATTTTGAAAGGATGATTCAGCCACCTGAACAATCTTCTCCTTCAAAGGAAGTGCCTTCTGGGTTTCTAAGCTTAAATAGAGTCATGAGCCTCGACAGGTCTCGCTCTACAATATTTGTATACAAGTCTTCAAATGCACTTTCTATGGAAGTTGATTTGAGCAAAGAACTCTCAGCTCCTGTTGTACAGCAGCAAATAGAGACACCAATTATGGCGACAGAAAGTGACAGCAAGAGAGTAAGGTGGAGATTAGCACCAACACGCCGTGAGCAAGACAAATGGAATAGAGCCACCAAAGCTGCAACTGACGGCAGTGATGTGATGTTTCGGGAATTAAGGAAGTCTCGTGAAAATCCCGAAGTATTGGCTGCTCAATACAGGGAGCAGTATATTAAGTTAAAGAAGAGGTTGCAAGCGCTTACATTGGGTATAGGTGGCGTTGGTCTTGTTTCAACTTATGTTTCTTATTCTCCTGAGATTGCAGCTAGCTTTGGTGCCGGCTTTCTTGGTTCTTTGGCGTATATCCGCATGCTGGGAAGTAGCATGGACTCACTAAACCCAAACGGTGCAAGGGCCGCTATCAAGGGAGCAATTGGGCAGCCAAGATTACTGGTTCCTGTTGTATTGGTTATGATTTATAATCGATGGAATGCGATTCTTGTTCCAGAATATGGAATTATGCACTTAGAATTGATACCAATGCTAGTTGGTTTTTTCACATACAAGATTGCAACTTTTGCACAAGCTATAGAGGAGGTGATTACTGTTGCATCAAAGGACCTAAATATATCGACCAAAGACTAA

Protein sequence

>Msa1456620

MGIMNYYNCVTCAATPMSQDSSSSSLPPNPRQTKVILPNKKPMKWSTGMAPGDYGGPPTTTKLRKYWGGGDPDPLASDDYLWNKDFVPHFERMIQPPEQSSPSKEVPSGFLSLNRVMSLDRSRSTIFVYKSSNALSMEVDLSKELSAPVVQQQIETPIMATESDSKRVRWRLAPTRREQDKWNRATKAATDGSDVMFRELRKSRENPEVLAAQYREQYIKLKKRLQALTLGIGGVGLVSTYVSYSPEIAASFGAGFLGSLAYIRMLGSSMDSLNPNGARAAIKGAIGQPRLLVPVVLVMIYNRWNAILVPEYGIMHLELIPMLVGFFTYKIATFAQAIEEVITVASKDLNISTKD*