AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404060 MtrunA17_Chr1g0193491 95.419 633 10 4 1 632 27 641 0.0 1202
Msa0404060 MtrunA17_Chr7g0271121 69.935 459 110 4 50 496 56 498 0.0 616
Msa0404060 MtrunA17_Chr5g0442191 59.686 382 140 2 91 472 80 447 8.64e-159 468
Msa0404060 MtrunA17_Chr3g0095031 58.486 383 145 2 91 473 89 457 1.67e-154 456
Msa0404060 MtrunA17_Chr1g0204391 41.487 417 205 8 93 486 45 445 1.38e-90 292
Msa0404060 MtrunA17_Chr6g0475251 42.455 391 202 7 106 489 117 491 5.50e-90 293
Msa0404060 MtrunA17_Chr6g0449911 36.038 419 240 9 97 511 170 564 5.17e-75 254
Msa0404060 MtrunA17_Chr2g0330401 36.410 390 226 7 86 469 90 463 1.12e-71 239
Msa0404060 MtrunA17_Chr2g0293631 37.845 362 203 4 97 454 501 844 1.95e-71 250
Msa0404060 MtrunA17_Chr1g0176041 34.096 481 262 14 61 519 123 570 1.37e-67 231
Msa0404060 MtrunA17_Chr3g0121351 35.294 442 226 13 59 467 111 525 7.80e-66 227
Msa0404060 MtrunA17_Chr3g0107851 39.542 349 184 7 117 454 142 474 6.30e-65 223
Msa0404060 MtrunA17_Chr4g0063551 37.701 374 197 9 102 455 150 507 1.70e-64 224
Msa0404060 MtrunA17_Chr7g0236841 35.714 378 218 7 96 469 14 370 4.28e-64 218
Msa0404060 MtrunA17_Chr4g0076491 36.870 377 199 6 100 454 295 654 2.40e-63 222
Msa0404060 MtrunA17_Chr6g0449741 36.702 376 199 6 100 454 257 614 3.59e-63 221
Msa0404060 MtrunA17_Chr6g0483491 35.185 378 220 7 96 469 14 370 4.85e-63 215
Msa0404060 MtrunA17_Chr5g0409981 35.870 368 215 7 97 458 109 461 1.68e-62 216
Msa0404060 MtrunA17_Chr7g0270131 36.856 369 209 7 97 459 237 587 3.33e-59 212
Msa0404060 MtrunA17_Chr1g0200181 34.043 376 219 6 98 462 151 508 4.93e-59 208
Msa0404060 MtrunA17_Chr2g0299681 34.278 388 216 9 96 473 45 403 7.86e-59 203
Msa0404060 MtrunA17_Chr1g0157691 33.511 376 221 6 98 462 153 510 2.14e-57 203
Msa0404060 MtrunA17_Chr2g0277821 32.120 467 286 11 94 550 506 951 6.34e-57 208
Msa0404060 MtrunA17_Chr2g0297261 32.597 362 215 7 94 450 36 373 6.81e-56 195
Msa0404060 MtrunA17_Chr4g0070981 34.521 365 200 9 96 450 45 380 7.91e-56 195
Msa0404060 MtrunA17_Chr2g0329931 32.982 379 219 9 96 466 45 396 2.79e-55 193
Msa0404060 MtrunA17_Chr8g0342861 32.746 397 229 10 96 483 45 412 4.25e-55 192
Msa0404060 MtrunA17_Chr4g0058591 36.808 307 187 4 98 401 208 510 2.11e-54 194
Msa0404060 MtrunA17_Chr3g0098121 34.367 387 225 9 95 473 155 520 1.40e-53 196
Msa0404060 MtrunA17_Chr2g0300291 34.987 383 221 10 95 469 144 506 4.02e-52 191
Msa0404060 MtrunA17_Chr7g0247191 32.199 382 228 8 101 477 159 514 7.24e-52 187
Msa0404060 MtrunA17_Chr7g0247181 31.675 382 230 8 101 477 149 504 5.75e-51 184
Msa0404060 MtrunA17_Chr7g0247221 31.675 382 230 8 101 477 152 507 7.29e-51 184
Msa0404060 MtrunA17_Chr4g0040761 32.055 365 223 7 96 455 23 367 1.59e-49 184
Msa0404060 MtrunA17_Chr4g0003441 29.894 378 224 11 117 485 133 478 2.28e-48 176
Msa0404060 MtrunA17_Chr8g0386451 33.604 369 207 10 103 452 299 648 1.15e-46 176
Msa0404060 MtrunA17_Chr1g0149251 29.738 343 207 9 130 463 2 319 1.42e-46 167
Msa0404060 MtrunA17_Chr7g0236831 30.858 431 213 12 94 454 165 580 6.38e-46 174
Msa0404060 MtrunA17_Chr8g0347161 31.549 355 219 7 110 452 120 462 1.09e-44 167
Msa0404060 MtrunA17_Chr8g0347151 32.493 357 213 9 110 452 219 561 2.07e-44 168
Msa0404060 MtrunA17_Chr4g0062301 31.977 344 211 7 110 447 115 441 2.90e-44 167
Msa0404060 MtrunA17_Chr2g0307471 31.436 369 225 8 93 452 92 441 6.63e-44 165
Msa0404060 MtrunA17_Chr6g0461751 28.906 384 250 9 81 458 129 495 7.49e-44 165
Msa0404060 MtrunA17_Chr2g0310581 31.122 392 240 7 93 476 54 423 4.34e-43 162
Msa0404060 MtrunA17_Chr1g0192021 29.777 403 239 9 95 460 29 424 6.34e-43 163
Msa0404060 MtrunA17_Chr3g0114081 31.746 378 210 13 116 466 40 396 8.67e-42 159
Msa0404060 MtrunA17_Chr8g0347171 31.389 360 213 8 110 452 178 520 2.14e-41 159
Msa0404060 MtrunA17_Chr7g0263771 30.278 360 224 9 99 454 140 476 5.26e-41 158
Msa0404060 MtrunA17_Chr6g0466611 27.151 523 306 15 96 562 146 649 1.31e-40 157
Msa0404060 MtrunA17_Chr5g0443991 31.356 354 219 8 111 457 95 431 3.01e-38 151
Msa0404060 MtrunA17_Chr2g0309551 26.637 443 242 12 94 472 111 534 1.72e-36 144
Msa0404060 MtrunA17_Chr4g0029191 27.727 440 228 13 93 457 45 469 3.87e-35 140
Msa0404060 MtrunA17_Chr5g0429221 29.293 396 250 12 94 483 5 376 6.22e-35 137
Msa0404060 MtrunA17_Chr4g0034411 30.075 399 230 14 84 465 72 438 1.14e-34 140
Msa0404060 MtrunA17_Chr2g0301281 27.840 449 236 14 93 467 42 476 2.29e-34 138
Msa0404060 MtrunA17_Chr4g0004301 28.251 446 213 15 101 469 38 453 1.05e-33 135
Msa0404060 MtrunA17_Chr1g0179761 29.255 376 228 14 129 482 120 479 2.64e-33 134
Msa0404060 MtrunA17_Chr5g0434301 28.251 446 213 15 101 469 38 453 4.22e-33 133
Msa0404060 MtrunA17_Chr1g0169331 29.082 392 201 16 117 462 16 376 1.64e-28 118
Msa0404060 MtrunA17_Chr3g0145781 27.628 409 234 15 96 468 136 518 2.22e-28 119
Msa0404060 MtrunA17_Chr4g0039471 36.098 205 118 3 89 288 220 416 1.07e-25 110
Msa0404060 MtrunA17_Chr4g0062321 29.787 235 156 5 176 406 4 233 3.36e-25 105
Msa0404060 MtrunA17_Chr8g0342851 26.857 350 195 12 120 461 1 297 7.49e-24 102
Msa0404060 MtrunA17_Chr3g0137891 31.250 176 102 5 130 297 2 166 7.71e-22 94.7
Msa0404060 MtrunA17_Chr1g0155201 26.752 314 190 10 206 515 2 279 7.12e-19 88.6
Msa0404060 MtrunA17_Chr8g0354761 24.543 383 232 13 110 466 20 371 1.74e-18 88.6
Msa0404060 MtrunA17_Chr8g0349951 33.553 152 91 4 96 244 14 158 2.59e-17 79.7
Msa0404060 MtrunA17_Chr3g0137901 28.947 190 113 6 298 485 1 170 5.73e-17 79.3
Msa0404060 MtrunA17_Chr4g0074521 25.307 407 250 13 99 471 89 475 6.67e-16 80.9
Msa0404060 MtrunA17_Chr4g0025141 28.241 216 147 6 272 482 15 227 2.19e-15 76.3
Msa0404060 MtrunA17_Chr3g0108851 24.654 361 223 12 110 456 13 338 3.27e-15 79.7
Msa0404060 MtrunA17_Chr4g0025131 32.090 134 67 4 129 253 96 214 1.64e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404060 AT5G26742.1 66.082 513 141 7 1 496 1 497 0.0 638
Msa0404060 AT5G26742.2 66.082 513 141 7 1 496 1 497 0.0 638
Msa0404060 AT5G26742.3 75.515 388 81 2 111 496 29 404 0.0 588
Msa0404060 AT3G22330.1 56.436 404 162 2 69 472 82 471 1.68e-153 456
Msa0404060 AT3G22310.2 56.806 382 151 2 91 472 116 483 1.22e-150 448
Msa0404060 AT3G22310.1 56.806 382 151 2 91 472 116 483 1.96e-150 448
Msa0404060 AT5G62190.1 44.529 393 195 7 93 478 98 474 5.66e-94 303
Msa0404060 AT3G01540.4 38.692 367 203 6 91 453 158 506 4.48e-76 255
Msa0404060 AT3G01540.2 38.692 367 203 6 91 453 158 506 4.48e-76 255
Msa0404060 AT3G01540.3 38.692 367 203 6 91 453 158 506 4.48e-76 255
Msa0404060 AT3G01540.1 38.692 367 203 6 91 453 158 506 4.81e-76 255
Msa0404060 AT1G55150.1 38.147 367 208 6 96 459 104 454 5.95e-73 243
Msa0404060 AT1G55150.2 38.147 367 208 6 96 459 129 479 2.33e-72 243
Msa0404060 AT5G14610.6 37.158 366 210 6 91 453 161 509 2.77e-72 245
Msa0404060 AT5G14610.2 37.158 366 210 6 91 453 161 509 2.89e-72 245
Msa0404060 AT5G14610.5 37.158 366 210 6 91 453 169 517 3.92e-72 245
Msa0404060 AT5G14610.1 35.111 450 250 9 18 453 156 577 1.95e-70 242
Msa0404060 AT5G14610.7 38.227 361 200 7 96 453 38 378 2.50e-70 237
Msa0404060 AT5G14610.3 38.227 361 200 7 96 453 38 378 2.50e-70 237
Msa0404060 AT3G06480.1 38.333 360 204 4 97 454 441 784 1.83e-68 242
Msa0404060 AT5G63120.2 33.489 427 234 9 84 493 144 537 1.59e-66 229
Msa0404060 AT5G14610.4 38.170 317 188 5 97 410 175 486 5.78e-64 219
Msa0404060 AT1G31970.1 39.429 350 192 7 116 458 139 475 9.44e-64 220
Msa0404060 AT3G58510.1 34.550 411 236 10 59 453 119 512 8.71e-63 219
Msa0404060 AT3G58510.3 34.550 411 236 10 59 453 119 512 8.71e-63 219
Msa0404060 AT3G58510.2 34.550 411 236 10 59 453 119 512 8.71e-63 219
Msa0404060 AT3G58570.1 35.222 406 223 11 65 453 127 509 1.81e-62 219
Msa0404060 AT2G33730.1 37.037 378 197 7 100 454 322 681 7.91e-62 219
Msa0404060 AT5G51280.1 34.392 378 219 6 96 462 151 510 2.17e-61 214
Msa0404060 AT2G47330.1 38.482 369 203 9 97 459 234 584 7.30e-61 216
Msa0404060 AT3G06480.2 38.318 321 190 4 97 415 441 755 1.14e-59 213
Msa0404060 AT5G60990.1 34.805 385 228 7 93 469 11 380 1.74e-59 206
Msa0404060 AT1G20920.2 36.188 362 204 8 97 450 197 539 2.83e-59 213
Msa0404060 AT4G33370.1 34.646 381 217 7 88 457 97 456 1.19e-58 206
Msa0404060 AT1G20920.4 35.792 366 208 8 97 454 535 881 2.47e-58 213
Msa0404060 AT1G20920.6 35.792 366 208 8 97 454 535 881 2.47e-58 213
Msa0404060 AT1G20920.3 35.792 366 208 8 97 454 535 881 2.47e-58 213
Msa0404060 AT1G20920.7 35.792 366 208 8 97 454 535 881 2.47e-58 213
Msa0404060 AT1G20920.5 35.792 366 208 8 97 454 535 881 2.47e-58 213
Msa0404060 AT1G20920.1 35.792 366 208 8 97 454 535 881 2.47e-58 213
Msa0404060 AT1G72730.1 34.483 377 207 10 117 483 67 413 7.34e-58 201
Msa0404060 AT3G19760.1 32.500 360 214 7 96 450 40 375 3.36e-56 196
Msa0404060 AT1G51380.1 33.884 363 201 10 117 469 48 381 3.54e-56 195
Msa0404060 AT5G63120.3 34.985 343 202 5 84 409 144 482 1.21e-55 196
Msa0404060 AT5G63120.4 34.985 343 202 5 84 409 144 482 1.21e-55 196
Msa0404060 AT5G63120.5 34.985 343 202 5 84 409 144 482 1.21e-55 196
Msa0404060 AT3G13920.3 32.663 398 228 10 96 483 34 401 1.42e-55 194
Msa0404060 AT3G13920.4 33.247 385 217 10 109 483 52 406 2.02e-55 194
Msa0404060 AT3G13920.1 32.412 398 229 10 96 483 44 411 2.32e-55 194
Msa0404060 AT5G63120.1 35.224 335 196 5 84 401 144 474 3.86e-55 195
Msa0404060 AT3G13920.2 33.245 376 212 9 96 461 44 390 4.67e-55 193
Msa0404060 AT3G13920.5 33.245 376 212 9 96 461 48 394 5.30e-55 193
Msa0404060 AT1G28180.1 36.202 337 194 6 126 458 8 327 6.55e-55 191
Msa0404060 AT4G16630.1 32.870 432 251 10 95 514 171 575 2.97e-54 198
Msa0404060 AT1G54270.1 31.910 398 231 10 96 483 44 411 7.63e-54 190
Msa0404060 AT1G54270.2 33.152 368 207 9 109 466 52 390 9.89e-54 189
Msa0404060 AT3G09620.2 34.160 363 189 7 97 454 403 720 1.38e-53 198
Msa0404060 AT3G09620.1 34.160 363 189 7 97 454 402 719 1.44e-53 198
Msa0404060 AT3G61240.2 32.172 373 222 8 102 469 135 481 5.98e-52 187
Msa0404060 AT3G61240.1 32.172 373 222 8 102 469 135 481 5.98e-52 187
Msa0404060 AT4G00660.1 31.937 382 229 8 101 477 141 496 8.14e-52 186
Msa0404060 AT4G00660.2 31.937 382 229 8 101 477 141 496 8.14e-52 186
Msa0404060 AT1G77030.1 30.982 397 222 10 96 483 33 386 2.32e-51 191
Msa0404060 AT1G16280.1 32.383 386 231 7 96 473 63 426 2.52e-50 182
Msa0404060 AT2G45810.1 32.172 373 222 9 102 469 165 511 1.71e-49 181
Msa0404060 AT3G18600.1 32.410 361 224 5 96 452 94 438 2.76e-49 181
Msa0404060 AT5G08620.1 34.072 361 202 11 110 452 99 441 4.47e-47 174
Msa0404060 AT5G11170.1 30.340 412 247 13 85 485 35 417 6.52e-47 171
Msa0404060 AT5G11200.1 30.340 412 247 13 85 485 35 417 6.52e-47 171
Msa0404060 AT5G65900.1 33.058 363 220 7 105 461 168 513 2.14e-46 174
Msa0404060 AT5G08610.1 32.880 368 211 11 103 452 394 743 3.20e-46 176
Msa0404060 AT5G11170.2 30.387 362 217 11 130 485 2 334 1.42e-45 165
Msa0404060 AT1G71370.1 30.348 402 240 11 83 466 6 385 3.61e-45 169
Msa0404060 AT5G05450.1 30.513 390 224 11 102 466 27 394 1.21e-44 168
Msa0404060 AT3G02065.3 30.214 374 239 8 85 452 104 461 5.32e-44 165
Msa0404060 AT3G02065.2 30.214 374 239 8 85 452 104 461 5.32e-44 165
Msa0404060 AT5G63630.1 31.793 368 215 9 103 452 66 415 2.42e-43 163
Msa0404060 AT5G63630.2 31.793 368 215 9 103 452 260 609 4.64e-43 165
Msa0404060 AT1G63250.1 28.747 407 262 9 103 496 340 731 1.28e-42 164
Msa0404060 AT2G07750.1 31.129 363 225 8 103 452 387 737 2.90e-42 164
Msa0404060 AT5G11200.3 28.540 452 244 15 85 485 35 458 4.47e-41 156
Msa0404060 AT1G12770.2 27.500 440 243 12 95 475 114 536 8.74e-41 156
Msa0404060 AT1G12770.1 27.500 440 243 12 95 475 114 536 8.74e-41 156
Msa0404060 AT3G02065.1 30.631 333 209 8 125 451 7 323 4.52e-40 150
Msa0404060 AT4G15850.1 28.046 517 274 16 83 525 21 513 2.18e-39 152
Msa0404060 AT3G09720.2 29.539 369 225 10 94 454 144 485 2.51e-39 152
Msa0404060 AT3G09720.1 29.539 369 225 10 94 454 144 485 2.51e-39 152
Msa0404060 AT4G34910.1 30.469 384 229 9 95 443 50 430 8.86e-38 149
Msa0404060 AT3G16840.1 29.048 420 214 11 102 452 201 605 2.51e-37 149
Msa0404060 AT3G16840.2 29.048 420 214 11 102 452 202 606 2.71e-37 149
Msa0404060 AT5G11200.2 26.866 469 248 15 85 485 35 476 5.88e-37 144
Msa0404060 AT4G09730.1 30.159 378 221 13 92 447 113 469 1.97e-36 145
Msa0404060 AT2G40700.1 26.818 440 224 12 93 452 32 453 2.07e-34 139
Msa0404060 AT5G54910.1 29.863 365 205 11 117 461 97 430 3.69e-34 139
Msa0404060 AT1G51380.2 37.198 207 114 5 117 319 48 242 3.42e-32 126
Msa0404060 AT3G53110.1 29.577 355 200 13 119 449 119 447 2.26e-31 128
Msa0404060 AT1G71280.2 29.538 325 166 9 102 405 28 310 6.25e-31 124
Msa0404060 AT1G51380.4 37.097 186 103 4 117 298 48 223 3.05e-30 121
Msa0404060 AT1G51380.3 37.097 186 103 4 117 298 48 223 5.68e-30 120
Msa0404060 AT3G06980.1 26.718 393 245 11 93 457 376 753 7.33e-30 126
Msa0404060 AT1G71280.1 30.503 318 174 11 102 406 28 311 1.11e-29 123
Msa0404060 AT1G28180.2 37.719 114 69 1 125 236 7 120 3.36e-16 75.5

Find 208 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATCATCAAAACCCTTTA+AGG 0.087090 3_2:-34740719 None:intergenic
TTAAACACGGTTTGTGTTTA+TGG 0.097693 3_2:+34737249 Msa0404060:CDS
TTTACCATCGGATGAATTTA+AGG 0.161078 3_2:+34739403 Msa0404060:CDS
ACTTAGTGAAATTCAGTATT+TGG 0.180815 3_2:+34737377 Msa0404060:CDS
AGTTGGAACACATTCAATTT+TGG 0.182549 3_2:+34740320 Msa0404060:three_prime_UTR
TGTTTAACAATGAACCTTAA+AGG 0.210215 3_2:+34740705 Msa0404060:three_prime_UTR
CTAAGAGAAGTACCGTTAAT+TGG 0.227037 3_2:-34740299 None:intergenic
CTTTGATGTGTAGTTCTTTC+GGG 0.236568 3_2:-34740413 None:intergenic
AGACTAATTGACTTGATAAA+TGG 0.251941 3_2:+34737342 Msa0404060:CDS
TCAGTGAGACCCTTGATAAT+TGG 0.264507 3_2:-34736996 None:intergenic
CTCTGCAACCATGCCGGGTT+GGG 0.279011 3_2:+34737497 Msa0404060:CDS
CAATCCATTGACTATTGATT+TGG 0.284192 3_2:+34737548 Msa0404060:CDS
CTTCGTCGTCATCAGGTTCT+AGG 0.291225 3_2:+34740006 Msa0404060:CDS
CTCTATGGAGATTATTAAAT+AGG 0.299510 3_2:-34740454 None:intergenic
TCAAAGCGGAGAATTCTTTA+TGG 0.300787 3_2:+34738202 Msa0404060:CDS
AGATATTCCCAATGTTGATT+TGG 0.306096 3_2:+34738842 Msa0404060:CDS
ACACAAACCGTGTTTAAATA+AGG 0.327046 3_2:-34737243 None:intergenic
CGTCACCTTGTTCAAGAATT+CGG 0.331909 3_2:+34740343 Msa0404060:three_prime_UTR
GCTTTGATGTGTAGTTCTTT+CGG 0.334131 3_2:-34740414 None:intergenic
ATCAAATGCGGGAACCTCTA+TGG 0.338170 3_2:-34740469 None:intergenic
ATTTCTTGTTACCTCCTGTT+TGG 0.349083 3_2:-34740116 None:intergenic
AGTGGTGATGACTGGTTAAT+TGG 0.352807 3_2:+34740047 Msa0404060:CDS
TGCTTTGCTAACTCCCTAGT+TGG 0.358455 3_2:-34737192 None:intergenic
TTAACGGTACTTCTCTTAGT+TGG 0.363400 3_2:+34740303 Msa0404060:exon
GCCCGTGCAAAGACCGGCAC+TGG 0.365374 3_2:+34736951 Msa0404060:CDS
TTCCGATGGAAGAAGCCATT+TGG 0.369204 3_2:-34736463 None:intergenic
TCAAACAGATCTTCGTCTTC+AGG 0.370048 3_2:+34739888 Msa0404060:CDS
GGTGGGGATGACTGGCTAAC+TGG 0.370356 3_2:+34739939 Msa0404060:CDS
TGAACAACTTAGGCCATCAT+TGG 0.371271 3_2:-34740372 None:intergenic
CTGATCAGATGCTTGCTGTT+GGG 0.371660 3_2:+34737412 Msa0404060:CDS
GATGACTGGCTAACTGGAAC+TGG 0.372565 3_2:+34739945 Msa0404060:CDS
GAAGTAATTATAGAGGATCT+AGG 0.374885 3_2:+34739793 Msa0404060:CDS
AACTTGCCCGGTAGATGATT+CGG 0.377681 3_2:-34739748 None:intergenic
GGTGCAAGGACCAGTACTTT+AGG 0.378658 3_2:-34737171 None:intergenic
CACCTCTCAAGAAGCCTTCA+AGG 0.382918 3_2:+34736649 Msa0404060:CDS
ACAATCTGACGCCCGATGCC+CGG 0.384553 3_2:-34740275 None:intergenic
GTTTAACAATGAACCTTAAA+GGG 0.384785 3_2:+34740706 Msa0404060:three_prime_UTR
TCCGATGGAAGAAGCCATTT+GGG 0.396483 3_2:-34736462 None:intergenic
GAACTTACCAAATCAACATT+GGG 0.398223 3_2:-34738849 None:intergenic
TGGAAGAAGCCATTTGGGTT+TGG 0.399406 3_2:-34736457 None:intergenic
TTTACCAAATCAATAGTCAA+TGG 0.399544 3_2:-34737552 None:intergenic
ATCGAAAGCAAAACCCTTGA+AGG 0.402035 3_2:-34736663 None:intergenic
GGTGGGGATGACTGGCGAAC+TGG 0.411571 3_2:+34739837 Msa0404060:CDS
GATGTTGTGGTTGGAACACC+TGG 0.411964 3_2:+34737318 Msa0404060:CDS
TTAAAACCGGTGGGGATGAC+TGG 0.418638 3_2:+34739931 Msa0404060:CDS
TCCCAGTGCCGGTCTTTGCA+CGG 0.418847 3_2:-34736953 None:intergenic
TTAGAACCGGTGGGGATGAC+TGG 0.422719 3_2:+34739829 Msa0404060:CDS
GTACATCGCTCTGGCCGTAC+TGG 0.423237 3_2:+34739597 Msa0404060:CDS
GTTCATTGCAGAGGTAGTTA+TGG 0.424073 3_2:+34740226 Msa0404060:intron
TTGTGGACAACCCGGGCATC+GGG 0.429704 3_2:+34740264 Msa0404060:CDS
AAATTGATTTAGTGTTTGTT+GGG 0.430422 3_2:+34740527 Msa0404060:three_prime_UTR
GATGCTTGCTGTTGGGTTTG+AGG 0.432183 3_2:+34737419 Msa0404060:CDS
GATCTTCGTCTTCAGGCTCT+AGG 0.434585 3_2:+34739895 Msa0404060:CDS
AATTACTTCTATCTCTATCA+AGG 0.436224 3_2:-34739779 None:intergenic
GTTGTGGACAACCCGGGCAT+CGG 0.436420 3_2:+34740263 Msa0404060:CDS
TCTCTGCAACCATGCCGGGT+TGG 0.436565 3_2:+34737496 Msa0404060:CDS
GGGTTGTCCACAACTAAAAC+AGG 0.437570 3_2:-34740254 None:intergenic
GTGTTGCTGCCTGCATTAGA+AGG 0.441743 3_2:+34736915 Msa0404060:CDS
ATTTGGAATTCCAATTATCA+AGG 0.441819 3_2:+34736986 Msa0404060:CDS
TAAGAGAAGTACCGTTAATT+GGG 0.442189 3_2:-34740298 None:intergenic
GAGGTGAGGATAGGAGCGTT+GGG 0.442286 3_2:-34736632 None:intergenic
AAAATTGATTTAGTGTTTGT+TGG 0.443100 3_2:+34740526 Msa0404060:three_prime_UTR
GAACTTGATATTTCCAAGCT+TGG 0.446617 3_2:+34736734 Msa0404060:CDS
TGAACTTACCAAATCAACAT+TGG 0.449440 3_2:-34738850 None:intergenic
GATGACTGGCGAACTGGAGG+TGG 0.451351 3_2:+34739843 Msa0404060:CDS
TTTCTGAAAGACAGCTGAGC+AGG 0.451510 3_2:-34740596 None:intergenic
AACAGATCTTCGTCGTCATC+AGG 0.453544 3_2:+34739999 Msa0404060:CDS
CCCAGTGCCGGTCTTTGCAC+GGG 0.455185 3_2:-34736952 None:intergenic
GCTGATCAGATGCTTGCTGT+TGG 0.455558 3_2:+34737411 Msa0404060:CDS
AGAGATAGAAGTAATTATAG+AGG 0.457285 3_2:+34739786 Msa0404060:CDS
GACTAATTGACTTGATAAAT+GGG 0.461480 3_2:+34737343 Msa0404060:CDS
ACTTGCCCGGTAGATGATTC+GGG 0.466682 3_2:-34739747 None:intergenic
CTCTCGAAACCAAACCCAAA+TGG 0.472675 3_2:+34736448 Msa0404060:exon
AAGTTGGTGTATTGAGAAGT+TGG 0.474560 3_2:-34736505 None:intergenic
CAGAGAGAGAAAACATTGAA+TGG 0.475305 3_2:+34738762 Msa0404060:CDS
TAATATTTGTTCAAGTGTAC+AGG 0.476744 3_2:+34740772 Msa0404060:three_prime_UTR
AGCATAATCTGGCGCTGAGA+TGG 0.477648 3_2:-34737471 None:intergenic
AAGGGTGTTTAGACGGGAAG+TGG 0.479860 3_2:-34736546 None:intergenic
AGGAGCGGCAAGGAAGGATA+AGG 0.480165 3_2:-34736421 None:intergenic
CGTCATCAGGTTCTAGGGAG+AGG 0.481308 3_2:+34740012 Msa0404060:CDS
TTCAATTTCTTGAACAACTT+AGG 0.481871 3_2:-34740382 None:intergenic
ATCATTGCCCGTGCAAAGAC+CGG 0.483333 3_2:+34736945 Msa0404060:CDS
TTGCAGAGAAAAGCATAATC+TGG 0.485007 3_2:-34737482 None:intergenic
CAATCTGACGCCCGATGCCC+GGG 0.485673 3_2:-34740274 None:intergenic
CGTGGTGTTGATGTTGTGGT+TGG 0.486388 3_2:+34737309 Msa0404060:CDS
CAACAGGAACATGGCTAAGT+TGG 0.488212 3_2:-34736697 None:intergenic
CGTCAGATTGTCCCAATTAA+CGG 0.488304 3_2:+34740287 Msa0404060:CDS
ACAGATCTTCATCACCAAAC+AGG 0.489904 3_2:+34740102 Msa0404060:CDS
ATTAGCTATCATAAGTATGT+TGG 0.490475 3_2:+34740673 Msa0404060:three_prime_UTR
TGGCTAACTGGAACTGGAGG+TGG 0.494049 3_2:+34739951 Msa0404060:CDS
TGGTCGGCTTCCTAAAGTAC+TGG 0.494432 3_2:+34737161 Msa0404060:CDS
AGGAGAAGGAGCGGCAAGGA+AGG 0.498115 3_2:-34736427 None:intergenic
GTCATCAGGTTCTAGGGAGA+GGG 0.498225 3_2:+34740013 Msa0404060:CDS
ACCCAAATGGCTTCTTCCAT+CGG 0.499197 3_2:+34736461 Msa0404060:exon
ATCAAGTCAATTAGTCTCCC+AGG 0.501703 3_2:-34737336 None:intergenic
CTGAGAAGGAAAACCAAGCT+TGG 0.501773 3_2:-34736747 None:intergenic
ACTGGGAAGACATTAGCATT+TGG 0.502302 3_2:+34736969 Msa0404060:CDS
TAATATTTCTGTGGAGTGAA+TGG 0.504401 3_2:-34740654 None:intergenic
GACAACTTCTTGACCCAACC+CGG 0.511795 3_2:-34737510 None:intergenic
ATATCCTTTGAGCGCGAAGT+AGG 0.513620 3_2:+34739681 Msa0404060:CDS
GTTAGCAAAGCAAGTAGAGA+AGG 0.514220 3_2:+34737203 Msa0404060:CDS
TCTCCGCTTTGATGTTGAAG+TGG 0.515468 3_2:-34738191 None:intergenic
TGCTAATGTCTTCCCAGTGC+CGG 0.517376 3_2:-34736964 None:intergenic
TTAAAACCAGTGGTGATGAC+TGG 0.517463 3_2:+34740039 Msa0404060:CDS
TCTGGCCGTACTGGCCGTGC+AGG 0.517707 3_2:+34739606 Msa0404060:CDS
TTGAAGTTGGATACCTGAAT+GGG 0.518186 3_2:-34736812 None:intergenic
ACAAAAGTCTCAGGACCATC+GGG 0.518681 3_2:-34739576 None:intergenic
GAGCGATGTACAAAAGTCTC+AGG 0.519453 3_2:-34739585 None:intergenic
AATTCGGCTGCATCCAATGA+TGG 0.519722 3_2:+34740359 Msa0404060:three_prime_UTR
ACGGAGAAGGGTGTTTAGAC+GGG 0.520049 3_2:-34736552 None:intergenic
GACGGAGAAGGGTGTTTAGA+CGG 0.520500 3_2:-34736553 None:intergenic
CTATTTAATAATCTCCATAG+AGG 0.521030 3_2:+34740455 Msa0404060:three_prime_UTR
GTTGAAGTTGGATACCTGAA+TGG 0.525180 3_2:-34736813 None:intergenic
GGTTTGGTTTCGAGAGGAGA+AGG 0.525936 3_2:-34736441 None:intergenic
TTTATCTCAGGCGGTCTGGT+CGG 0.527861 3_2:+34737145 Msa0404060:intron
TTTGTTGGGGCAATGTTACT+CGG 0.528217 3_2:+34740541 Msa0404060:three_prime_UTR
TACTGGCCGTGCAGGAAAAG+AGG 0.528368 3_2:+34739614 Msa0404060:CDS
AGAGAGTCAACAAGCTGAGA+AGG 0.528969 3_2:-34736761 None:intergenic
GCATAATCTGGCGCTGAGAT+GGG 0.533531 3_2:-34737470 None:intergenic
AGAGGTGAGGATAGGAGCGT+TGG 0.534928 3_2:-34736633 None:intergenic
TACAAAAGTCTCAGGACCAT+CGG 0.536572 3_2:-34739577 None:intergenic
ATCTTCGTCTTCAGGCTCTA+GGG 0.536603 3_2:+34739896 Msa0404060:CDS
AGTTGGTGTATTGAGAAGTT+GGG 0.537093 3_2:-34736504 None:intergenic
TTCACGTGGTGTTGATGTTG+TGG 0.537970 3_2:+34737305 Msa0404060:CDS
GCAGCCTACTTCGCGCTCAA+AGG 0.538313 3_2:-34739685 None:intergenic
ATATCTCTACCTTCTAATGC+AGG 0.541305 3_2:-34736924 None:intergenic
AGGTGAGGATAGGAGCGTTG+GGG 0.541838 3_2:-34736631 None:intergenic
CTTCTTGACCCAACCCGGCA+TGG 0.547157 3_2:-34737505 None:intergenic
AGAATGAACAAAGCAATATG+AGG 0.547453 3_2:+34737018 Msa0404060:CDS
TTCGTCGTCATCAGGTTCTA+GGG 0.548645 3_2:+34740007 Msa0404060:CDS
AAGTAATTATAGAGGATCTA+GGG 0.551599 3_2:+34739794 Msa0404060:CDS
AGAGAAGAAAAGCTTGCTGA+AGG 0.552690 3_2:+34738145 Msa0404060:CDS
ACCTCTCAAGAAGCCTTCAA+GGG 0.554185 3_2:+34736650 Msa0404060:CDS
GGGGATGACTGGCGAACTGG+AGG 0.555224 3_2:+34739840 Msa0404060:CDS
GGTAAATCTTGCATAGGTGG+TGG 0.555366 3_2:-34739726 None:intergenic
CATTGCAGAGGTAGTTATGG+AGG 0.556291 3_2:+34740229 Msa0404060:intron
GAGAAGAAAAGCTTGCTGAA+GGG 0.558256 3_2:+34738146 Msa0404060:CDS
ACCCTTGAAGGCTTCTTGAG+AGG 0.559026 3_2:-34736651 None:intergenic
CTTCTATCTCTATCAAGGGT+AGG 0.559161 3_2:-34739774 None:intergenic
TTTGGAATTCCAATTATCAA+GGG 0.559273 3_2:+34736987 Msa0404060:CDS
ACTGGTCCTTGCACCAACTA+GGG 0.559610 3_2:+34737179 Msa0404060:CDS
TATGATAGCTAATATTTCTG+TGG 0.562030 3_2:-34740663 None:intergenic
GATTTACCCGAATCATCTAC+CGG 0.562079 3_2:+34739741 Msa0404060:CDS
ATTACTTCTATCTCTATCAA+GGG 0.563205 3_2:-34739778 None:intergenic
AATTGATTTAGTGTTTGTTG+GGG 0.565006 3_2:+34740528 Msa0404060:three_prime_UTR
GGTGAGGATAGGAGCGTTGG+GGG 0.566054 3_2:-34736630 None:intergenic
TTGTAGAGTGAAAATGAAGT+TGG 0.566352 3_2:-34736521 None:intergenic
TACTGGTCCTTGCACCAACT+AGG 0.566760 3_2:+34737178 Msa0404060:CDS
CATTTGGGTTTGGTTTCGAG+AGG 0.566819 3_2:-34736447 None:intergenic
CCCGTGCAAAGACCGGCACT+GGG 0.569064 3_2:+34736952 Msa0404060:CDS
GGTCTTCCCACCATTTGCAT+AGG 0.572519 3_2:-34738640 None:intergenic
GTTAGGACGGAGACGGAGAA+GGG 0.573864 3_2:-34736564 None:intergenic
TGCTGACGGCAACAGGAACA+TGG 0.573995 3_2:-34736706 None:intergenic
AATTAACCAGTCATCACCAC+TGG 0.576337 3_2:-34740045 None:intergenic
GCTTCTTGAGAGGTGAGGAT+AGG 0.577028 3_2:-34736641 None:intergenic
AAAAGTCTGATATCAAATGC+GGG 0.579088 3_2:-34740480 None:intergenic
AGTTAGCCAGTCATCCCCAC+CGG 0.580437 3_2:-34739937 None:intergenic
GCTACCGACGTTGCTTCTCG+TGG 0.581057 3_2:+34738816 Msa0404060:CDS
TCGGGTAAATCTTGCATAGG+TGG 0.581209 3_2:-34739729 None:intergenic
GTGTTTCTTATGATATTCAG+AGG 0.581523 3_2:+34737274 Msa0404060:CDS
GGTTAGGACGGAGACGGAGA+AGG 0.582894 3_2:-34736565 None:intergenic
ACTGGAGGTGGACGATCAAG+TGG 0.584590 3_2:+34739855 Msa0404060:CDS
ACTGGAGGTGGACGATCAAG+TGG 0.584590 3_2:+34739963 Msa0404060:CDS
TTGCTTCATTAGAGAGTGTG+CGG 0.585375 3_2:+34736398 Msa0404060:five_prime_UTR
AAGTTGTTCAAGAAATTGAA+AGG 0.587714 3_2:+34740385 Msa0404060:three_prime_UTR
GAAACCTTAAATTCATCCGA+TGG 0.588097 3_2:-34739407 None:intergenic
CTAACTCCCTAGTTGGTGCA+AGG 0.591840 3_2:-34737185 None:intergenic
GAAATAACGAAGGAAACTGT+GGG 0.591997 3_2:-34736596 None:intergenic
ATTGCAGAGGTAGTTATGGA+GGG 0.595367 3_2:+34740230 Msa0404060:intron
AGAAATAACGAAGGAAACTG+TGG 0.597293 3_2:-34736597 None:intergenic
AAGGGTAGGAACAACTTGCC+CGG 0.597767 3_2:-34739760 None:intergenic
TTTAGGCCTATGCAAATGGT+GGG 0.598035 3_2:+34738634 Msa0404060:intron
CGAGAGGAGAAGGAGCGGCA+AGG 0.599390 3_2:-34736431 None:intergenic
AGTTCGCCAGTCATCCCCAC+CGG 0.600061 3_2:-34739835 None:intergenic
ATCTGCACCTTATTTAAACA+CGG 0.607535 3_2:+34737236 Msa0404060:CDS
GTTTATGGAAGAAGTTCCGA+TGG 0.609496 3_2:-34736477 None:intergenic
CAGAGGAATGCACTTTCACG+TGG 0.610909 3_2:+34737291 Msa0404060:CDS
AAGCAACGTCGGTAGCAACA+AGG 0.611860 3_2:-34738809 None:intergenic
TCATCAGGTTCTAGGGAGAG+GGG 0.613376 3_2:+34740014 Msa0404060:CDS
ACTGGCCGTGCAGGAAAAGA+GGG 0.613644 3_2:+34739615 Msa0404060:CDS
ATAGCTTCTAAACCACTACA+TGG 0.622535 3_2:+34738723 Msa0404060:CDS
TGAAGGCTTCTTGAGAGGTG+AGG 0.623187 3_2:-34736646 None:intergenic
AACACGGTTTGTGTTTATGG+TGG 0.625227 3_2:+34737252 Msa0404060:CDS
GATTCGGGTAAATCTTGCAT+AGG 0.625880 3_2:-34739732 None:intergenic
TGCAGCCGAATTCTTGAACA+AGG 0.628515 3_2:-34740348 None:intergenic
AGACGAAGATCTGTTTGATG+AGG 0.635097 3_2:-34739883 None:intergenic
GTTGACTCTCTTCAGAGACG+TGG 0.636630 3_2:+34736773 Msa0404060:CDS
GACTGGCTAACTGGAACTGG+AGG 0.640148 3_2:+34739948 Msa0404060:CDS
GGTGATGACTGGTTAATTGG+AGG 0.643911 3_2:+34740050 Msa0404060:CDS
TTGCAGAGGTAGTTATGGAG+GGG 0.644021 3_2:+34740231 Msa0404060:intron
ATACATTATGAACTTCCCGA+TGG 0.645169 3_2:+34739561 Msa0404060:CDS
TTGGAGGTAGACGATCAAGC+GGG 0.654420 3_2:+34740066 Msa0404060:CDS
TGAGAGATATCACCATGTAG+TGG 0.665455 3_2:-34738735 None:intergenic
ATTGGAGGTAGACGATCAAG+CGG 0.670884 3_2:+34740065 Msa0404060:CDS
ATTTACCCGAATCATCTACC+GGG 0.684199 3_2:+34739742 Msa0404060:CDS
GATCTTCATCACCAAACAGG+AGG 0.684380 3_2:+34740105 Msa0404060:CDS
GGTTTCGAGAGGAGAAGGAG+CGG 0.685868 3_2:-34736436 None:intergenic
GGCAATAGCAGAAATAACGA+AGG 0.690915 3_2:-34736606 None:intergenic
CTGGAGGTGGACGATCAAGT+GGG 0.691338 3_2:+34739856 Msa0404060:CDS
CTGGAGGTGGACGATCAAGT+GGG 0.691338 3_2:+34739964 Msa0404060:CDS
ATGTTGTGGTTGGAACACCT+GGG 0.694661 3_2:+34737319 Msa0404060:CDS
AGAGGATCTAGGGATCAAAG+TGG 0.704990 3_2:+34739804 Msa0404060:CDS
AATAACGAAGGAAACTGTGG+GGG 0.709480 3_2:-34736594 None:intergenic
CAGCCACTTCAACATCAAAG+CGG 0.718579 3_2:+34738188 Msa0404060:CDS
AAATAACGAAGGAAACTGTG+GGG 0.742350 3_2:-34736595 None:intergenic
TGAAGTTGGATACCTGAATG+GGG 0.754768 3_2:-34736811 None:intergenic
TAGTCCACGAGAAGCAACGT+CGG 0.755822 3_2:-34738820 None:intergenic
TCAGGCTCTAGGGATCAGAG+AGG 0.774336 3_2:+34739906 Msa0404060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATTAAATTAACAAAC+AGG - chr3_2:34737075-34737094 None:intergenic 10.0%
!!! TAATTATGATTTGTTTTAAT+CGG + chr3_2:34738080-34738099 Msa0404060:intron 10.0%
!!! ATTTTTATAATGATGCATTT+CGG + chr3_2:34737116-34737135 Msa0404060:intron 15.0%
!!! AAGATTTTGGTTTTAAAATT+TGG + chr3_2:34739089-34739108 Msa0404060:intron 15.0%
!! ATAAAATAAAAACATTGGAA+TGG - chr3_2:34739521-34739540 None:intergenic 15.0%
!! AGGTATTAAAAATTGTAAAT+TGG + chr3_2:34740743-34740762 Msa0404060:three_prime_UTR 15.0%
!! AATAAAGTAAATGTTGAAGT+TGG - chr3_2:34736828-34736847 None:intergenic 20.0%
!! TAATGAAACTAAATTTGACA+AGG - chr3_2:34736864-34736883 None:intergenic 20.0%
!! AATAAATGAGACATGTAATT+TGG - chr3_2:34737604-34737623 None:intergenic 20.0%
!! AATAGAAAAGTCATAGATTA+TGG - chr3_2:34737776-34737795 None:intergenic 20.0%
!!! TAAAATACCTAATCATTTTG+TGG + chr3_2:34737827-34737846 Msa0404060:intron 20.0%
!! AACTAGATTATTCATGAAAT+GGG - chr3_2:34737863-34737882 None:intergenic 20.0%
!! AAACTAGATTATTCATGAAA+TGG - chr3_2:34737864-34737883 None:intergenic 20.0%
!!! TAATCACATTTTCATCTTTT+TGG + chr3_2:34737898-34737917 Msa0404060:intron 20.0%
!! AATTACAATAACGTAAAGAT+CGG - chr3_2:34738065-34738084 None:intergenic 20.0%
!!! TTTCACTTTTCTTTTTAACA+AGG + chr3_2:34738114-34738133 Msa0404060:intron 20.0%
!!! TGTATATTATCATGTCTTTT+AGG + chr3_2:34738617-34738636 Msa0404060:intron 20.0%
!!! ATTACTGTTATTTGGTATTT+AGG + chr3_2:34739020-34739039 Msa0404060:intron 20.0%
!! TAAGTTTGATTACTGTTATT+TGG + chr3_2:34739047-34739066 Msa0404060:intron 20.0%
!!! ATTACTGTTATTTGGTATTT+AGG + chr3_2:34739020-34739039 Msa0404060:intron 20.0%
!!! GGATTTCTCAATTTTTAATT+TGG + chr3_2:34739184-34739203 Msa0404060:intron 20.0%
!! ATCCAAAATTTACATATAAC+AGG - chr3_2:34739214-34739233 None:intergenic 20.0%
!!! ATTTCAATTTTGTTTACCAT+CGG + chr3_2:34739391-34739410 Msa0404060:CDS 20.0%
!!! AAAAAGATGTTTTTATGCTT+TGG + chr3_2:34739450-34739469 Msa0404060:intron 20.0%
!!! ACTAAATCAATTTTACATCA+CGG - chr3_2:34740520-34740539 None:intergenic 20.0%
!!! AAAATTGATTTAGTGTTTGT+TGG + chr3_2:34740526-34740545 Msa0404060:three_prime_UTR 20.0%
!!! AAATTGATTTAGTGTTTGTT+GGG + chr3_2:34740527-34740546 Msa0404060:three_prime_UTR 20.0%
! AAACTAAATTTGACAAGGTA+AGG - chr3_2:34736859-34736878 None:intergenic 25.0%
!! ATTTGGAATTCCAATTATCA+AGG + chr3_2:34736986-34737005 Msa0404060:CDS 25.0%
!! TTTGGAATTCCAATTATCAA+GGG + chr3_2:34736987-34737006 Msa0404060:CDS 25.0%
!!! AGACTAATTGACTTGATAAA+TGG + chr3_2:34737342-34737361 Msa0404060:CDS 25.0%
!!! GACTAATTGACTTGATAAAT+GGG + chr3_2:34737343-34737362 Msa0404060:CDS 25.0%
! ACTTAGTGAAATTCAGTATT+TGG + chr3_2:34737377-34737396 Msa0404060:CDS 25.0%
! TTTACCAAATCAATAGTCAA+TGG - chr3_2:34737555-34737574 None:intergenic 25.0%
!! ATTACTAAGCAATTTTTGTG+TGG + chr3_2:34737801-34737820 Msa0404060:intron 25.0%
!! TTACTAAGCAATTTTTGTGT+GGG + chr3_2:34737802-34737821 Msa0404060:intron 25.0%
! ACTAGATTATTCATGAAATG+GGG - chr3_2:34737862-34737881 None:intergenic 25.0%
! GATATGCATGTATAATCAAT+TGG + chr3_2:34737940-34737959 Msa0404060:intron 25.0%
! TTATAGTCCAAATCTATGAA+TGG - chr3_2:34737983-34738002 None:intergenic 25.0%
!!! AATTTTTTATGTCAAACTGC+TGG + chr3_2:34738028-34738047 Msa0404060:intron 25.0%
!! ACTTTTCTTTTTAACAAGGT+CGG + chr3_2:34738118-34738137 Msa0404060:intron 25.0%
!! AGAAAACATTGAATGGTTTT+CGG + chr3_2:34738769-34738788 Msa0404060:CDS 25.0%
!!! AAGTTCAAAGTGATGTTTTT+TGG + chr3_2:34738866-34738885 Msa0404060:intron 25.0%
! TTAATATGTAATGCCAACTA+AGG + chr3_2:34738974-34738993 Msa0404060:intron 25.0%
! ATAACAGTAATCAACATGAA+GGG - chr3_2:34739011-34739030 None:intergenic 25.0%
! AATAACAGTAATCAACATGA+AGG - chr3_2:34739012-34739031 None:intergenic 25.0%
!! TCATGTTGATTACTGTTATT+TGG + chr3_2:34739012-34739031 Msa0404060:intron 25.0%
!!! GGCATTTAAGTTTAAGATTT+TGG + chr3_2:34739076-34739095 Msa0404060:intron 25.0%
!!! AAATTTGGTGTCTACAAATT+TGG + chr3_2:34739104-34739123 Msa0404060:intron 25.0%
!!! AATTTGGTGTCTACAAATTT+GGG + chr3_2:34739105-34739124 Msa0404060:intron 25.0%
! TTAACAAAGCATGTTTATTC+TGG + chr3_2:34739157-34739176 Msa0404060:intron 25.0%
!! TGCCTGTTATATGTAAATTT+TGG + chr3_2:34739209-34739228 Msa0404060:intron 25.0%
! TGAATATCCTTATATCAAAC+AGG - chr3_2:34739239-34739258 None:intergenic 25.0%
! GTACGTTATTTAATCTGATT+TGG + chr3_2:34739302-34739321 Msa0404060:intron 25.0%
! TGTTTGTTTAAACAATGCAT+TGG + chr3_2:34739351-34739370 Msa0404060:intron 25.0%
! ATTACTTCTATCTCTATCAA+GGG - chr3_2:34739781-34739800 None:intergenic 25.0%
! AATTACTTCTATCTCTATCA+AGG - chr3_2:34739782-34739801 None:intergenic 25.0%
! AGAGATAGAAGTAATTATAG+AGG + chr3_2:34739786-34739805 Msa0404060:CDS 25.0%
! AAGTAATTATAGAGGATCTA+GGG + chr3_2:34739794-34739813 Msa0404060:CDS 25.0%
! AGATTCGTTTGCTTTATATT+TGG + chr3_2:34740175-34740194 Msa0404060:intron 25.0%
! GATTCGTTTGCTTTATATTT+GGG + chr3_2:34740176-34740195 Msa0404060:intron 25.0%
! TTCAATTTCTTGAACAACTT+AGG - chr3_2:34740385-34740404 None:intergenic 25.0%
! AAGTTGTTCAAGAAATTGAA+AGG + chr3_2:34740385-34740404 Msa0404060:three_prime_UTR 25.0%
! CTCTATGGAGATTATTAAAT+AGG - chr3_2:34740457-34740476 None:intergenic 25.0%
! CTATTTAATAATCTCCATAG+AGG + chr3_2:34740455-34740474 Msa0404060:three_prime_UTR 25.0%
! AAAAAGTCTGATATCAAATG+CGG - chr3_2:34740484-34740503 None:intergenic 25.0%
!! AATTGATTTAGTGTTTGTTG+GGG + chr3_2:34740528-34740547 Msa0404060:three_prime_UTR 25.0%
!! TATGATAGCTAATATTTCTG+TGG - chr3_2:34740666-34740685 None:intergenic 25.0%
! ATTAGCTATCATAAGTATGT+TGG + chr3_2:34740673-34740692 Msa0404060:three_prime_UTR 25.0%
! TGTTTAACAATGAACCTTAA+AGG + chr3_2:34740705-34740724 Msa0404060:three_prime_UTR 25.0%
! GTTTAACAATGAACCTTAAA+GGG + chr3_2:34740706-34740725 Msa0404060:three_prime_UTR 25.0%
! TAATATTTGTTCAAGTGTAC+AGG + chr3_2:34740772-34740791 Msa0404060:three_prime_UTR 25.0%
TTGTAGAGTGAAAATGAAGT+TGG - chr3_2:34736524-34736543 None:intergenic 30.0%
AGAATGAACAAAGCAATATG+AGG + chr3_2:34737018-34737037 Msa0404060:CDS 30.0%
! ATCTGCACCTTATTTAAACA+CGG + chr3_2:34737236-34737255 Msa0404060:CDS 30.0%
ACACAAACCGTGTTTAAATA+AGG - chr3_2:34737246-34737265 None:intergenic 30.0%
TTAAACACGGTTTGTGTTTA+TGG + chr3_2:34737249-34737268 Msa0404060:CDS 30.0%
GTGTTTCTTATGATATTCAG+AGG + chr3_2:34737274-34737293 Msa0404060:CDS 30.0%
! CAATCCATTGACTATTGATT+TGG + chr3_2:34737548-34737567 Msa0404060:CDS 30.0%
CTATATAGTCAACACACATT+GGG - chr3_2:34737647-34737666 None:intergenic 30.0%
ACTATATAGTCAACACACAT+TGG - chr3_2:34737648-34737667 None:intergenic 30.0%
ACAAGACTCAAATAATTGGA+GGG - chr3_2:34737688-34737707 None:intergenic 30.0%
AACAAGACTCAAATAATTGG+AGG - chr3_2:34737689-34737708 None:intergenic 30.0%
GTCAACAAGACTCAAATAAT+TGG - chr3_2:34737692-34737711 None:intergenic 30.0%
ACAAAGACCACAAAATGATT+AGG - chr3_2:34737837-34737856 None:intergenic 30.0%
! AATAATCTAGTTTACAGCAG+CGG + chr3_2:34737871-34737890 Msa0404060:intron 30.0%
TATACATGCATATCATGTGA+TGG - chr3_2:34737934-34737953 None:intergenic 30.0%
AATCAATTGGAGAGAAATGA+AGG + chr3_2:34737953-34737972 Msa0404060:intron 30.0%
ATCAATTGGAGAGAAATGAA+GGG + chr3_2:34737954-34737973 Msa0404060:intron 30.0%
!!! TTTGTTTTAATCGGTGTTGA+TGG + chr3_2:34738089-34738108 Msa0404060:intron 30.0%
!!! TTGTTTTAATCGGTGTTGAT+GGG + chr3_2:34738090-34738109 Msa0404060:intron 30.0%
!!! GAGGTTTTGTTTAGTAGTTA+TGG + chr3_2:34738297-34738316 Msa0404060:intron 30.0%
! TATCATTTTAAACAGTGAGC+AGG - chr3_2:34738332-34738351 None:intergenic 30.0%
AAAATTTCTTGTTCAGAAGC+AGG + chr3_2:34738360-34738379 Msa0404060:intron 30.0%
ATAGAGTTCGTTTAAACAGT+TGG - chr3_2:34738389-34738408 None:intergenic 30.0%
AACTGTTTAAACGAACTCTA+TGG + chr3_2:34738388-34738407 Msa0404060:intron 30.0%
TTTAAACGAACTCTATGGTT+TGG + chr3_2:34738393-34738412 Msa0404060:intron 30.0%
AAGAGTAACTTGAAGACATT+TGG - chr3_2:34738566-34738585 None:intergenic 30.0%
GTTACTCTTGAATACAAGAA+AGG + chr3_2:34738577-34738596 Msa0404060:intron 30.0%
! TTTTGTCCGTGTAAAAACAA+TGG - chr3_2:34738664-34738683 None:intergenic 30.0%
!!! TTGTTTTTACACGGACAAAA+AGG + chr3_2:34738664-34738683 Msa0404060:CDS 30.0%
!! TGTTTTTACACGGACAAAAA+GGG + chr3_2:34738665-34738684 Msa0404060:CDS 30.0%
! AGATATTCCCAATGTTGATT+TGG + chr3_2:34738842-34738861 Msa0404060:CDS 30.0%
GAACTTACCAAATCAACATT+GGG - chr3_2:34738852-34738871 None:intergenic 30.0%
TGAACTTACCAAATCAACAT+TGG - chr3_2:34738853-34738872 None:intergenic 30.0%
AAGACTGAAGATAAGATGTT+TGG - chr3_2:34738899-34738918 None:intergenic 30.0%
AAACATCTTATCTTCAGTCT+TGG + chr3_2:34738898-34738917 Msa0404060:intron 30.0%
CGTGAGATATTATTATCTCT+AGG + chr3_2:34739129-34739148 Msa0404060:intron 30.0%
AAGCATGTTTATTCTGGATA+AGG + chr3_2:34739163-34739182 Msa0404060:intron 30.0%
!!! GCATTGGTTAATTCTTTTGT+AGG + chr3_2:34739367-34739386 Msa0404060:intron 30.0%
TTTACCATCGGATGAATTTA+AGG + chr3_2:34739403-34739422 Msa0404060:CDS 30.0%
! GGATATAACAGTTCTTTTCT+GGG - chr3_2:34739667-34739686 None:intergenic 30.0%
! AGGATATAACAGTTCTTTTC+TGG - chr3_2:34739668-34739687 None:intergenic 30.0%
GAAGTAATTATAGAGGATCT+AGG + chr3_2:34739793-34739812 Msa0404060:CDS 30.0%
!! TAAGAGAAGTACCGTTAATT+GGG - chr3_2:34740301-34740320 None:intergenic 30.0%
! AGTTGGAACACATTCAATTT+TGG + chr3_2:34740320-34740339 Msa0404060:three_prime_UTR 30.0%
AAAAGTCTGATATCAAATGC+GGG - chr3_2:34740483-34740502 None:intergenic 30.0%
! TAATATTTCTGTGGAGTGAA+TGG - chr3_2:34740657-34740676 None:intergenic 30.0%
GTTATCATCAAAACCCTTTA+AGG - chr3_2:34740722-34740741 None:intergenic 30.0%
!! AAAGGGTTTTGATGATAACA+AGG + chr3_2:34740723-34740742 Msa0404060:three_prime_UTR 30.0%
!!! GAGAAGTTGGGTTTTGTTTA+TGG - chr3_2:34736495-34736514 None:intergenic 35.0%
! AGTTGGTGTATTGAGAAGTT+GGG - chr3_2:34736507-34736526 None:intergenic 35.0%
!! AAGTTGGTGTATTGAGAAGT+TGG - chr3_2:34736508-34736527 None:intergenic 35.0%
AAATAACGAAGGAAACTGTG+GGG - chr3_2:34736598-34736617 None:intergenic 35.0%
GAAATAACGAAGGAAACTGT+GGG - chr3_2:34736599-34736618 None:intergenic 35.0%
AGAAATAACGAAGGAAACTG+TGG - chr3_2:34736600-34736619 None:intergenic 35.0%
!! ATCAAGTTCGTTTTTGCTGA+CGG - chr3_2:34736723-34736742 None:intergenic 35.0%
GAACTTGATATTTCCAAGCT+TGG + chr3_2:34736734-34736753 Msa0404060:CDS 35.0%
TTGAAGTTGGATACCTGAAT+GGG - chr3_2:34736815-34736834 None:intergenic 35.0%
GCTCTCTAATCAACAAGATA+AGG - chr3_2:34736894-34736913 None:intergenic 35.0%
ATATCTCTACCTTCTAATGC+AGG - chr3_2:34736927-34736946 None:intergenic 35.0%
TGAACAAAGCAATATGAGGT+AGG + chr3_2:34737022-34737041 Msa0404060:intron 35.0%
!!! TTTCGGTGTTCTTTTATCTC+AGG + chr3_2:34737133-34737152 Msa0404060:intron 35.0%
! TTGCAGAGAAAAGCATAATC+TGG - chr3_2:34737485-34737504 None:intergenic 35.0%
TGACGTAAAACTCACCTAAA+TGG + chr3_2:34737708-34737727 Msa0404060:intron 35.0%
! TAAGCAAATTCCTGCCATTT+AGG - chr3_2:34737725-34737744 None:intergenic 35.0%
AGGGAAACCATTCATAGATT+TGG + chr3_2:34737973-34737992 Msa0404060:intron 35.0%
TCAAAGCGGAGAATTCTTTA+TGG + chr3_2:34738202-34738221 Msa0404060:CDS 35.0%
!! TTCAGTCTTAGCTTGTTGTT+TGG + chr3_2:34738252-34738271 Msa0404060:intron 35.0%
! ATCTACATTTTGCTTCTCTG+AGG + chr3_2:34738278-34738297 Msa0404060:intron 35.0%
AATACCCTGACACAAACTTA+AGG + chr3_2:34738477-34738496 Msa0404060:intron 35.0%
!!! GGAAGACCATTGTTTTTACA+CGG + chr3_2:34738655-34738674 Msa0404060:CDS 35.0%
ATAGCTTCTAAACCACTACA+TGG + chr3_2:34738723-34738742 Msa0404060:CDS 35.0%
CAGAGAGAGAAAACATTGAA+TGG + chr3_2:34738762-34738781 Msa0404060:CDS 35.0%
GAAGATAAGATGTTTGGACA+TGG - chr3_2:34738893-34738912 None:intergenic 35.0%
!! GGTTTTATCAAAGCCTTAGT+TGG - chr3_2:34738990-34739009 None:intergenic 35.0%
GTGACAGAGATTGAGTAATA+AGG - chr3_2:34739281-34739300 None:intergenic 35.0%
GAAACCTTAAATTCATCCGA+TGG - chr3_2:34739410-34739429 None:intergenic 35.0%
AAAACATTGGAATGGCAACA+AGG - chr3_2:34739513-34739532 None:intergenic 35.0%
ATACATTATGAACTTCCCGA+TGG + chr3_2:34739561-34739580 Msa0404060:CDS 35.0%
!!! GATCAAAGTGGTTTTAGAAC+CGG + chr3_2:34739816-34739835 Msa0404060:CDS 35.0%
!!! GATCAGAGAGGTTTTAAAAC+CGG + chr3_2:34739918-34739937 Msa0404060:CDS 35.0%
ATTTCTTGTTACCTCCTGTT+TGG - chr3_2:34740119-34740138 None:intergenic 35.0%
!! CTAAGAGAAGTACCGTTAAT+TGG - chr3_2:34740302-34740321 None:intergenic 35.0%
TTAACGGTACTTCTCTTAGT+TGG + chr3_2:34740303-34740322 Msa0404060:exon 35.0%
CTTTGATGTGTAGTTCTTTC+GGG - chr3_2:34740416-34740435 None:intergenic 35.0%
GCTTTGATGTGTAGTTCTTT+CGG - chr3_2:34740417-34740436 None:intergenic 35.0%
! TTGCTTCATTAGAGAGTGTG+CGG + chr3_2:34736398-34736417 Msa0404060:five_prime_UTR 40.0%
GTTTATGGAAGAAGTTCCGA+TGG - chr3_2:34736480-34736499 None:intergenic 40.0%
AATAACGAAGGAAACTGTGG+GGG - chr3_2:34736597-34736616 None:intergenic 40.0%
GGCAATAGCAGAAATAACGA+AGG - chr3_2:34736609-34736628 None:intergenic 40.0%
ATCGAAAGCAAAACCCTTGA+AGG - chr3_2:34736666-34736685 None:intergenic 40.0%
!!! TACTAGTCTTTTCCCCATTC+AGG + chr3_2:34736799-34736818 Msa0404060:CDS 40.0%
TGAAGTTGGATACCTGAATG+GGG - chr3_2:34736814-34736833 None:intergenic 40.0%
GTTGAAGTTGGATACCTGAA+TGG - chr3_2:34736816-34736835 None:intergenic 40.0%
ACTGGGAAGACATTAGCATT+TGG + chr3_2:34736969-34736988 Msa0404060:CDS 40.0%
! TCAGTGAGACCCTTGATAAT+TGG - chr3_2:34736999-34737018 None:intergenic 40.0%
GTTAGCAAAGCAAGTAGAGA+AGG + chr3_2:34737203-34737222 Msa0404060:CDS 40.0%
AACACGGTTTGTGTTTATGG+TGG + chr3_2:34737252-34737271 Msa0404060:CDS 40.0%
! ATCAAGTCAATTAGTCTCCC+AGG - chr3_2:34737339-34737358 None:intergenic 40.0%
GACTCAAATAATTGGAGGGT+AGG - chr3_2:34737684-34737703 None:intergenic 40.0%
GTAAAACTCACCTAAATGGC+AGG + chr3_2:34737712-34737731 Msa0404060:intron 40.0%
!! AGAGAAGAAAAGCTTGCTGA+AGG + chr3_2:34738145-34738164 Msa0404060:CDS 40.0%
!! GAGAAGAAAAGCTTGCTGAA+GGG + chr3_2:34738146-34738165 Msa0404060:CDS 40.0%
ACAGCCTTAAGTTTGTGTCA+GGG - chr3_2:34738484-34738503 None:intergenic 40.0%
! GTCTTTTAGGCCTATGCAAA+TGG + chr3_2:34738630-34738649 Msa0404060:intron 40.0%
! TTTTAGGCCTATGCAAATGG+TGG + chr3_2:34738633-34738652 Msa0404060:intron 40.0%
TTTAGGCCTATGCAAATGGT+GGG + chr3_2:34738634-34738653 Msa0404060:intron 40.0%
TGAGAGATATCACCATGTAG+TGG - chr3_2:34738738-34738757 None:intergenic 40.0%
! ACATTGAATGGTTTTCGGCA+AGG + chr3_2:34738774-34738793 Msa0404060:CDS 40.0%
TGGATCGCCTGTTTGATATA+AGG + chr3_2:34739229-34739248 Msa0404060:intron 40.0%
TACAAAAGTCTCAGGACCAT+CGG - chr3_2:34739580-34739599 None:intergenic 40.0%
!! AACAGTTCTTTTCTGGGAAG+TGG - chr3_2:34739661-34739680 None:intergenic 40.0%
GATTCGGGTAAATCTTGCAT+AGG - chr3_2:34739735-34739754 None:intergenic 40.0%
GATTTACCCGAATCATCTAC+CGG + chr3_2:34739741-34739760 Msa0404060:CDS 40.0%
ATTTACCCGAATCATCTACC+GGG + chr3_2:34739742-34739761 Msa0404060:CDS 40.0%
CTTCTATCTCTATCAAGGGT+AGG - chr3_2:34739777-34739796 None:intergenic 40.0%
!!! AAAGTGGTTTTAGAACCGGT+GGG + chr3_2:34739820-34739839 Msa0404060:CDS 40.0%
AGACGAAGATCTGTTTGATG+AGG - chr3_2:34739886-34739905 None:intergenic 40.0%
TCAAACAGATCTTCGTCTTC+AGG + chr3_2:34739888-34739907 Msa0404060:CDS 40.0%
!!! AGAGAGGTTTTAAAACCGGT+GGG + chr3_2:34739922-34739941 Msa0404060:CDS 40.0%
! TTAAAACCAGTGGTGATGAC+TGG + chr3_2:34740039-34740058 Msa0404060:CDS 40.0%
AATTAACCAGTCATCACCAC+TGG - chr3_2:34740048-34740067 None:intergenic 40.0%
! AGTGGTGATGACTGGTTAAT+TGG + chr3_2:34740047-34740066 Msa0404060:CDS 40.0%
ACAGATCTTCATCACCAAAC+AGG + chr3_2:34740102-34740121 Msa0404060:CDS 40.0%
TTGGGTGTACGTATAACTCA+TGG + chr3_2:34740194-34740213 Msa0404060:intron 40.0%
CATCTGAATGTTCATTGCAG+AGG + chr3_2:34740217-34740236 Msa0404060:intron 40.0%
GTTCATTGCAGAGGTAGTTA+TGG + chr3_2:34740226-34740245 Msa0404060:intron 40.0%
ATTGCAGAGGTAGTTATGGA+GGG + chr3_2:34740230-34740249 Msa0404060:intron 40.0%
!!! TGTTTTAGTTGTGGACAACC+CGG + chr3_2:34740256-34740275 Msa0404060:CDS 40.0%
CGTCAGATTGTCCCAATTAA+CGG + chr3_2:34740287-34740306 Msa0404060:CDS 40.0%
CGTCACCTTGTTCAAGAATT+CGG + chr3_2:34740343-34740362 Msa0404060:three_prime_UTR 40.0%
TGAACAACTTAGGCCATCAT+TGG - chr3_2:34740375-34740394 None:intergenic 40.0%
TTTGTTGGGGCAATGTTACT+CGG + chr3_2:34740541-34740560 Msa0404060:three_prime_UTR 40.0%
GCTGTCTTTCAGAAAAAGAC+AGG + chr3_2:34740604-34740623 Msa0404060:three_prime_UTR 40.0%
! CATTTGGGTTTGGTTTCGAG+AGG - chr3_2:34736450-34736469 None:intergenic 45.0%
CTCTCGAAACCAAACCCAAA+TGG + chr3_2:34736448-34736467 Msa0404060:exon 45.0%
! TGGAAGAAGCCATTTGGGTT+TGG - chr3_2:34736460-34736479 None:intergenic 45.0%
ACCCAAATGGCTTCTTCCAT+CGG + chr3_2:34736461-34736480 Msa0404060:exon 45.0%
TCCGATGGAAGAAGCCATTT+GGG - chr3_2:34736465-34736484 None:intergenic 45.0%
TTCCGATGGAAGAAGCCATT+TGG - chr3_2:34736466-34736485 None:intergenic 45.0%
! TTTTGTGGTTAGGACGGAGA+CGG - chr3_2:34736574-34736593 None:intergenic 45.0%
ACCTCTCAAGAAGCCTTCAA+GGG + chr3_2:34736650-34736669 Msa0404060:CDS 45.0%
CAACAGGAACATGGCTAAGT+TGG - chr3_2:34736700-34736719 None:intergenic 45.0%
CTGAGAAGGAAAACCAAGCT+TGG - chr3_2:34736750-34736769 None:intergenic 45.0%
AGAGAGTCAACAAGCTGAGA+AGG - chr3_2:34736764-34736783 None:intergenic 45.0%
! CGGTGTTCTTTTATCTCAGG+CGG + chr3_2:34737136-34737155 Msa0404060:intron 45.0%
! TTCTTTTATCTCAGGCGGTC+TGG + chr3_2:34737141-34737160 Msa0404060:intron 45.0%
TGCTTTGCTAACTCCCTAGT+TGG - chr3_2:34737195-34737214 None:intergenic 45.0%
!! TTCACGTGGTGTTGATGTTG+TGG + chr3_2:34737305-34737324 Msa0404060:CDS 45.0%
ATGTTGTGGTTGGAACACCT+GGG + chr3_2:34737319-34737338 Msa0404060:CDS 45.0%
!! CTGATCAGATGCTTGCTGTT+GGG + chr3_2:34737412-34737431 Msa0404060:CDS 45.0%
CAGCCACTTCAACATCAAAG+CGG + chr3_2:34738188-34738207 Msa0404060:CDS 45.0%
TCTCCGCTTTGATGTTGAAG+TGG - chr3_2:34738194-34738213 None:intergenic 45.0%
GACAGCCTTAAGTTTGTGTC+AGG - chr3_2:34738485-34738504 None:intergenic 45.0%
TACACGGACAAAAAGGGATG+CGG + chr3_2:34738671-34738690 Msa0404060:CDS 45.0%
ACAAAAGTCTCAGGACCATC+GGG - chr3_2:34739579-34739598 None:intergenic 45.0%
GAGCGATGTACAAAAGTCTC+AGG - chr3_2:34739588-34739607 None:intergenic 45.0%
! GAGACTTTTGTACATCGCTC+TGG + chr3_2:34739588-34739607 Msa0404060:CDS 45.0%
ATATCCTTTGAGCGCGAAGT+AGG + chr3_2:34739681-34739700 Msa0404060:CDS 45.0%
GGTAAATCTTGCATAGGTGG+TGG - chr3_2:34739729-34739748 None:intergenic 45.0%
TCGGGTAAATCTTGCATAGG+TGG - chr3_2:34739732-34739751 None:intergenic 45.0%
AACTTGCCCGGTAGATGATT+CGG - chr3_2:34739751-34739770 None:intergenic 45.0%
AGAGGATCTAGGGATCAAAG+TGG + chr3_2:34739804-34739823 Msa0404060:CDS 45.0%
!!! CAAAGTGGTTTTAGAACCGG+TGG + chr3_2:34739819-34739838 Msa0404060:CDS 45.0%
!!! AAGTGGTTTTAGAACCGGTG+GGG + chr3_2:34739821-34739840 Msa0404060:CDS 45.0%
ATCTTCGTCTTCAGGCTCTA+GGG + chr3_2:34739896-34739915 Msa0404060:CDS 45.0%
!!! CAGAGAGGTTTTAAAACCGG+TGG + chr3_2:34739921-34739940 Msa0404060:CDS 45.0%
!!! GAGAGGTTTTAAAACCGGTG+GGG + chr3_2:34739923-34739942 Msa0404060:CDS 45.0%
AACAGATCTTCGTCGTCATC+AGG + chr3_2:34739999-34740018 Msa0404060:CDS 45.0%
TTCGTCGTCATCAGGTTCTA+GGG + chr3_2:34740007-34740026 Msa0404060:CDS 45.0%
!!! GAGAGGGGTTTTAAAACCAG+TGG + chr3_2:34740029-34740048 Msa0404060:CDS 45.0%
! GGTGATGACTGGTTAATTGG+AGG + chr3_2:34740050-34740069 Msa0404060:CDS 45.0%
ATTGGAGGTAGACGATCAAG+CGG + chr3_2:34740065-34740084 Msa0404060:CDS 45.0%
GATCTTCATCACCAAACAGG+AGG + chr3_2:34740105-34740124 Msa0404060:CDS 45.0%
CATTGCAGAGGTAGTTATGG+AGG + chr3_2:34740229-34740248 Msa0404060:intron 45.0%
TTGCAGAGGTAGTTATGGAG+GGG + chr3_2:34740231-34740250 Msa0404060:intron 45.0%
GGGTTGTCCACAACTAAAAC+AGG - chr3_2:34740257-34740276 None:intergenic 45.0%
!!! GTTTTAGTTGTGGACAACCC+GGG + chr3_2:34740257-34740276 Msa0404060:CDS 45.0%
TGCAGCCGAATTCTTGAACA+AGG - chr3_2:34740351-34740370 None:intergenic 45.0%
AATTCGGCTGCATCCAATGA+TGG + chr3_2:34740359-34740378 Msa0404060:three_prime_UTR 45.0%
ATCAAATGCGGGAACCTCTA+TGG - chr3_2:34740472-34740491 None:intergenic 45.0%
! TTTCTGAAAGACAGCTGAGC+AGG - chr3_2:34740599-34740618 None:intergenic 45.0%
!! AAAAAATAAAATAAAAACAT+TGG - chr3_2:34739526-34739545 None:intergenic 5.0%
! GGTTTGGTTTCGAGAGGAGA+AGG - chr3_2:34736444-34736463 None:intergenic 50.0%
!! AAGGGTGTTTAGACGGGAAG+TGG - chr3_2:34736549-34736568 None:intergenic 50.0%
!! ACGGAGAAGGGTGTTTAGAC+GGG - chr3_2:34736555-34736574 None:intergenic 50.0%
!! GACGGAGAAGGGTGTTTAGA+CGG - chr3_2:34736556-34736575 None:intergenic 50.0%
!! TGGGGGTTTTGTGGTTAGGA+CGG - chr3_2:34736580-34736599 None:intergenic 50.0%
!! ACTGTGGGGGTTTTGTGGTT+AGG - chr3_2:34736584-34736603 None:intergenic 50.0%
! AGGAAACTGTGGGGGTTTTG+TGG - chr3_2:34736589-34736608 None:intergenic 50.0%
GCTTCTTGAGAGGTGAGGAT+AGG - chr3_2:34736644-34736663 None:intergenic 50.0%
TGAAGGCTTCTTGAGAGGTG+AGG - chr3_2:34736649-34736668 None:intergenic 50.0%
CACCTCTCAAGAAGCCTTCA+AGG + chr3_2:34736649-34736668 Msa0404060:CDS 50.0%
ACCCTTGAAGGCTTCTTGAG+AGG - chr3_2:34736654-34736673 None:intergenic 50.0%
!! TCGTTTTTGCTGACGGCAAC+AGG - chr3_2:34736716-34736735 None:intergenic 50.0%
! GTTGACTCTCTTCAGAGACG+TGG + chr3_2:34736773-34736792 Msa0404060:CDS 50.0%
! GTGTTGCTGCCTGCATTAGA+AGG + chr3_2:34736915-34736934 Msa0404060:CDS 50.0%
ATCATTGCCCGTGCAAAGAC+CGG + chr3_2:34736945-34736964 Msa0404060:CDS 50.0%
TGCTAATGTCTTCCCAGTGC+CGG - chr3_2:34736967-34736986 None:intergenic 50.0%
TTTATCTCAGGCGGTCTGGT+CGG + chr3_2:34737145-34737164 Msa0404060:intron 50.0%
! TGGTCGGCTTCCTAAAGTAC+TGG + chr3_2:34737161-34737180 Msa0404060:CDS 50.0%
GGTGCAAGGACCAGTACTTT+AGG - chr3_2:34737174-34737193 None:intergenic 50.0%
TACTGGTCCTTGCACCAACT+AGG + chr3_2:34737178-34737197 Msa0404060:CDS 50.0%
ACTGGTCCTTGCACCAACTA+GGG + chr3_2:34737179-34737198 Msa0404060:CDS 50.0%
! CTAACTCCCTAGTTGGTGCA+AGG - chr3_2:34737188-34737207 None:intergenic 50.0%
CAGAGGAATGCACTTTCACG+TGG + chr3_2:34737291-34737310 Msa0404060:CDS 50.0%
!! CGTGGTGTTGATGTTGTGGT+TGG + chr3_2:34737309-34737328 Msa0404060:CDS 50.0%
GATGTTGTGGTTGGAACACC+TGG + chr3_2:34737318-34737337 Msa0404060:CDS 50.0%
!! GCTGATCAGATGCTTGCTGT+TGG + chr3_2:34737411-34737430 Msa0404060:CDS 50.0%
!! GATGCTTGCTGTTGGGTTTG+AGG + chr3_2:34737419-34737438 Msa0404060:CDS 50.0%
! GCATAATCTGGCGCTGAGAT+GGG - chr3_2:34737473-34737492 None:intergenic 50.0%
! AGCATAATCTGGCGCTGAGA+TGG - chr3_2:34737474-34737493 None:intergenic 50.0%
! GCTTTTCTCTGCAACCATGC+CGG + chr3_2:34737491-34737510 Msa0404060:CDS 50.0%
! CTTTTCTCTGCAACCATGCC+GGG + chr3_2:34737492-34737511 Msa0404060:CDS 50.0%
GACAACTTCTTGACCCAACC+CGG - chr3_2:34737513-34737532 None:intergenic 50.0%
GGTCTTCCCACCATTTGCAT+AGG - chr3_2:34738643-34738662 None:intergenic 50.0%
AAGCAACGTCGGTAGCAACA+AGG - chr3_2:34738812-34738831 None:intergenic 50.0%
TAGTCCACGAGAAGCAACGT+CGG - chr3_2:34738823-34738842 None:intergenic 50.0%
! CTGTACCCTCTTTTCCTGCA+CGG - chr3_2:34739623-34739642 None:intergenic 50.0%
ACTTGCCCGGTAGATGATTC+GGG - chr3_2:34739750-34739769 None:intergenic 50.0%
AAGGGTAGGAACAACTTGCC+CGG - chr3_2:34739763-34739782 None:intergenic 50.0%
GATCTTCGTCTTCAGGCTCT+AGG + chr3_2:34739895-34739914 Msa0404060:CDS 50.0%
TTAAAACCGGTGGGGATGAC+TGG + chr3_2:34739931-34739950 Msa0404060:CDS 50.0%
! GATGACTGGCTAACTGGAAC+TGG + chr3_2:34739945-34739964 Msa0404060:CDS 50.0%
CTTCGTCGTCATCAGGTTCT+AGG + chr3_2:34740006-34740025 Msa0404060:CDS 50.0%
!! GTCATCAGGTTCTAGGGAGA+GGG + chr3_2:34740013-34740032 Msa0404060:CDS 50.0%
!! TCATCAGGTTCTAGGGAGAG+GGG + chr3_2:34740014-34740033 Msa0404060:CDS 50.0%
TTGGAGGTAGACGATCAAGC+GGG + chr3_2:34740066-34740085 Msa0404060:CDS 50.0%
AGGAGCGGCAAGGAAGGATA+AGG - chr3_2:34736424-34736443 None:intergenic 55.0%
GGTTTCGAGAGGAGAAGGAG+CGG - chr3_2:34736439-34736458 None:intergenic 55.0%
GTTAGGACGGAGACGGAGAA+GGG - chr3_2:34736567-34736586 None:intergenic 55.0%
!! AGGTGAGGATAGGAGCGTTG+GGG - chr3_2:34736634-34736653 None:intergenic 55.0%
!! GAGGTGAGGATAGGAGCGTT+GGG - chr3_2:34736635-34736654 None:intergenic 55.0%
! AGAGGTGAGGATAGGAGCGT+TGG - chr3_2:34736636-34736655 None:intergenic 55.0%
TGCTGACGGCAACAGGAACA+TGG - chr3_2:34736709-34736728 None:intergenic 55.0%
! CTTTTCCTGCACGGCCAGTA+CGG - chr3_2:34739614-34739633 None:intergenic 55.0%
TACTGGCCGTGCAGGAAAAG+AGG + chr3_2:34739614-34739633 Msa0404060:CDS 55.0%
ACTGGCCGTGCAGGAAAAGA+GGG + chr3_2:34739615-34739634 Msa0404060:CDS 55.0%
TTAGAACCGGTGGGGATGAC+TGG + chr3_2:34739829-34739848 Msa0404060:CDS 55.0%
ACTGGAGGTGGACGATCAAG+TGG + chr3_2:34739855-34739874 Msa0404060:CDS 55.0%
CTGGAGGTGGACGATCAAGT+GGG + chr3_2:34739856-34739875 Msa0404060:CDS 55.0%
!! TCAGGCTCTAGGGATCAGAG+AGG + chr3_2:34739906-34739925 Msa0404060:CDS 55.0%
AGTTAGCCAGTCATCCCCAC+CGG - chr3_2:34739940-34739959 None:intergenic 55.0%
! GACTGGCTAACTGGAACTGG+AGG + chr3_2:34739948-34739967 Msa0404060:CDS 55.0%
TGGCTAACTGGAACTGGAGG+TGG + chr3_2:34739951-34739970 Msa0404060:CDS 55.0%
ACTGGAGGTGGACGATCAAG+TGG + chr3_2:34739855-34739874 Msa0404060:CDS 55.0%
CTGGAGGTGGACGATCAAGT+GGG + chr3_2:34739856-34739875 Msa0404060:CDS 55.0%
!! CGTCATCAGGTTCTAGGGAG+AGG + chr3_2:34740012-34740031 Msa0404060:CDS 55.0%
!!! GGAGGGGCCTGTTTTAGTTG+TGG + chr3_2:34740247-34740266 Msa0404060:CDS 55.0%
AGGAGAAGGAGCGGCAAGGA+AGG - chr3_2:34736430-34736449 None:intergenic 60.0%
GGTTAGGACGGAGACGGAGA+AGG - chr3_2:34736568-34736587 None:intergenic 60.0%
!! GGTGAGGATAGGAGCGTTGG+GGG - chr3_2:34736633-34736652 None:intergenic 60.0%
!! TCCCAGTGCCGGTCTTTGCA+CGG - chr3_2:34736956-34736975 None:intergenic 60.0%
TCTCTGCAACCATGCCGGGT+TGG + chr3_2:34737496-34737515 Msa0404060:CDS 60.0%
CTCTGCAACCATGCCGGGTT+GGG + chr3_2:34737497-34737516 Msa0404060:CDS 60.0%
CTTCTTGACCCAACCCGGCA+TGG - chr3_2:34737508-34737527 None:intergenic 60.0%
GCTACCGACGTTGCTTCTCG+TGG + chr3_2:34738816-34738835 Msa0404060:CDS 60.0%
GTACATCGCTCTGGCCGTAC+TGG + chr3_2:34739597-34739616 Msa0404060:CDS 60.0%
GCAGCCTACTTCGCGCTCAA+AGG - chr3_2:34739688-34739707 None:intergenic 60.0%
AGTTCGCCAGTCATCCCCAC+CGG - chr3_2:34739838-34739857 None:intergenic 60.0%
GATGACTGGCGAACTGGAGG+TGG + chr3_2:34739843-34739862 Msa0404060:CDS 60.0%
! GGTGGGGATGACTGGCTAAC+TGG + chr3_2:34739939-34739958 Msa0404060:CDS 60.0%
GTTGTGGACAACCCGGGCAT+CGG + chr3_2:34740263-34740282 Msa0404060:CDS 60.0%
TTGTGGACAACCCGGGCATC+GGG + chr3_2:34740264-34740283 Msa0404060:CDS 60.0%
ACAATCTGACGCCCGATGCC+CGG - chr3_2:34740278-34740297 None:intergenic 60.0%
CGAGAGGAGAAGGAGCGGCA+AGG - chr3_2:34736434-34736453 None:intergenic 65.0%
!! GAGGATAGGAGCGTTGGGGG+TGG - chr3_2:34736630-34736649 None:intergenic 65.0%
!! CCCAGTGCCGGTCTTTGCAC+GGG - chr3_2:34736955-34736974 None:intergenic 65.0%
CCCGTGCAAAGACCGGCACT+GGG + chr3_2:34736952-34736971 Msa0404060:CDS 65.0%
GGTGGGGATGACTGGCGAAC+TGG + chr3_2:34739837-34739856 Msa0404060:CDS 65.0%
GGGGATGACTGGCGAACTGG+AGG + chr3_2:34739840-34739859 Msa0404060:CDS 65.0%
CAATCTGACGCCCGATGCCC+GGG - chr3_2:34740277-34740296 None:intergenic 65.0%
GCCCGTGCAAAGACCGGCAC+TGG + chr3_2:34736951-34736970 Msa0404060:CDS 70.0%
! TCTGGCCGTACTGGCCGTGC+AGG + chr3_2:34739606-34739625 Msa0404060:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 34736382 34740799 34736382 ID=Msa0404060;Name=Msa0404060
chr3_2 mRNA 34736382 34740799 34736382 ID=Msa0404060-mRNA-1;Parent=Msa0404060;Name=Msa0404060-mRNA-1;_AED=0.03;_eAED=0.03;_QI=85|0.71|0.75|0.87|0.85|0.87|8|493|632
chr3_2 exon 34736382 34736820 34736382 ID=Msa0404060-mRNA-1:exon:7052;Parent=Msa0404060-mRNA-1
chr3_2 exon 34736909 34737039 34736909 ID=Msa0404060-mRNA-1:exon:7053;Parent=Msa0404060-mRNA-1
chr3_2 exon 34737155 34737569 34737155 ID=Msa0404060-mRNA-1:exon:7054;Parent=Msa0404060-mRNA-1
chr3_2 exon 34738136 34738234 34738136 ID=Msa0404060-mRNA-1:exon:7055;Parent=Msa0404060-mRNA-1
chr3_2 exon 34738639 34738863 34738639 ID=Msa0404060-mRNA-1:exon:7056;Parent=Msa0404060-mRNA-1
chr3_2 exon 34739389 34739424 34739389 ID=Msa0404060-mRNA-1:exon:7057;Parent=Msa0404060-mRNA-1
chr3_2 exon 34739558 34740126 34739558 ID=Msa0404060-mRNA-1:exon:7058;Parent=Msa0404060-mRNA-1
chr3_2 exon 34740237 34740799 34740237 ID=Msa0404060-mRNA-1:exon:7059;Parent=Msa0404060-mRNA-1
chr3_2 five_prime_UTR 34736382 34736466 34736382 ID=Msa0404060-mRNA-1:five_prime_utr;Parent=Msa0404060-mRNA-1
chr3_2 CDS 34736467 34736820 34736467 ID=Msa0404060-mRNA-1:cds;Parent=Msa0404060-mRNA-1
chr3_2 CDS 34736909 34737039 34736909 ID=Msa0404060-mRNA-1:cds;Parent=Msa0404060-mRNA-1
chr3_2 CDS 34737155 34737569 34737155 ID=Msa0404060-mRNA-1:cds;Parent=Msa0404060-mRNA-1
chr3_2 CDS 34738136 34738234 34738136 ID=Msa0404060-mRNA-1:cds;Parent=Msa0404060-mRNA-1
chr3_2 CDS 34738639 34738863 34738639 ID=Msa0404060-mRNA-1:cds;Parent=Msa0404060-mRNA-1
chr3_2 CDS 34739389 34739424 34739389 ID=Msa0404060-mRNA-1:cds;Parent=Msa0404060-mRNA-1
chr3_2 CDS 34739558 34740126 34739558 ID=Msa0404060-mRNA-1:cds;Parent=Msa0404060-mRNA-1
chr3_2 CDS 34740237 34740306 34740237 ID=Msa0404060-mRNA-1:cds;Parent=Msa0404060-mRNA-1
chr3_2 three_prime_UTR 34740307 34740799 34740307 ID=Msa0404060-mRNA-1:three_prime_utr;Parent=Msa0404060-mRNA-1
Gene Sequence

>Msa0404060

ATGGCTTCTTCCATCGGAACTTCTTCCATAAACAAAACCCAACTTCTCAATACACCAACTTCATTTTCACTCTACAACACCACTTCCCGTCTAAACACCCTTCTCCGTCTCCGTCCTAACCACAAAACCCCCACAGTTTCCTTCGTTATTTCTGCTATTGCCACCCCCAACGCTCCTATCCTCACCTCTCAAGAAGCCTTCAAGGGTTTTGCTTTCGATGACGCTAACGACCAACTTAGCCATGTTCCTGTTGCCGTCAGCAAAAACGAACTTGATATTTCCAAGCTTGGTTTTCCTTCTCAGCTTGTTGACTCTCTTCAGAGACGTGGAATTACTAGTCTTTTCCCCATTCAGAGAGCTGTGTTGCTGCCTGCATTAGAAGGTAGAGATATCATTGCCCGTGCAAAGACCGGCACTGGGAAGACATTAGCATTTGGAATTCCAATTATCAAGGGTCTCACTGAGAATGAACAAAGCAATATGAGGCGGTCTGGTCGGCTTCCTAAAGTACTGGTCCTTGCACCAACTAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATTTAAACACGGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAGAGGAATGCACTTTCACGTGGTGTTGATGTTGTGGTTGGAACACCTGGGAGACTAATTGACTTGATAAATGGGAGAACTCTTAAACTTAGTGAAATTCAGTATTTGGTGCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGAATGTCGAAGAAATTTTAGAAACGATCCCATCTCAGCGCCAGATTATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGAACAATCCATTGACTATTGATTTGGTCGGTGACAGAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTGTATCAGCCACTTCAACATCAAAGCGGAGAATTCTTTATGGTCTTATAAGTGCCTATGCAAATGGTGGGAAGACCATTGTTTTTACACGGACAAAAAGGGATGCGGATGAAATATCATTGTCACTAACAAATAGCATAGCTTCTAAACCACTACATGGTGATATCTCTCAGTATCAGAGAGAGAAAACATTGAATGGTTTTCGGCAAGGAAGATTCACAGTCCTTGTTGCTACCGACGTTGCTTCTCGTGGACTAGATATTCCCAATGTTGATTTGGAATTTCAATTTTGTTTACCATCGGATGAATTTAAGATTATACATTATGAACTTCCCGATGGTCCTGAGACTTTTGTACATCGCTCTGGCCGTACTGGCCGTGCAGGAAAAGAGGGTACAGCTGTTGTAATGTACACCACTTCCCAGAAAAGAACTGTTATATCCTTTGAGCGCGAAGTAGGCTGCACGTTTGAATTTATTAGTCCACCACCTATGCAAGATTTACCCGAATCATCTACCGGGCAAGTTGTTCCTACCCTTGATAGAGATAGAAGTAATTATAGAGGATCTAGGGATCAAAGTGGTTTTAGAACCGGTGGGGATGACTGGCGAACTGGAGGTGGACGATCAAGTGGGTATTCCTCATCAAACAGATCTTCGTCTTCAGGCTCTAGGGATCAGAGAGGTTTTAAAACCGGTGGGGATGACTGGCTAACTGGAACTGGAGGTGGACGATCAAGTGGGTATTCGTCATCAAACAGATCTTCGTCGTCATCAGGTTCTAGGGAGAGGGGTTTTAAAACCAGTGGTGATGACTGGTTAATTGGAGGTAGACGATCAAGCGGGTATTCATCATCAAACAGATCTTCATCACCAAACAGGAGAGGTAGTTATGGAGGGGCCTGTTTTAGTTGTGGACAACCCGGGCATCGGGCGTCAGATTGTCCCAATTAA

Protein sequence

>Msa0404060

MASSIGTSSINKTQLLNTPTSFSLYNTTSRLNTLLRLRPNHKTPTVSFVISAIATPNAPILTSQEAFKGFAFDDANDQLSHVPVAVSKNELDISKLGFPSQLVDSLQRRGITSLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPIIKGLTENEQSNMRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQRNALSRGVDVVVGTPGRLIDLINGRTLKLSEIQYLVLDEADQMLAVGFEENVEEILETIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAEGIKLYAVSATSTSKRRILYGLISAYANGGKTIVFTRTKRDADEISLSLTNSIASKPLHGDISQYQREKTLNGFRQGRFTVLVATDVASRGLDIPNVDLEFQFCLPSDEFKIIHYELPDGPETFVHRSGRTGRAGKEGTAVVMYTTSQKRTVISFEREVGCTFEFISPPPMQDLPESSTGQVVPTLDRDRSNYRGSRDQSGFRTGGDDWRTGGGRSSGYSSSNRSSSSGSRDQRGFKTGGDDWLTGTGGGRSSGYSSSNRSSSSSGSRERGFKTSGDDWLIGGRRSSGYSSSNRSSSPNRRGSYGGACFSCGQPGHRASDCPN*