AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1101300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101300 MtrunA17_Chr7g0253111 96.053 152 3 1 1 152 1 149 7.23e-103 303
Msa1101300 MtrunA17_Chr7g0253111 95.161 124 6 0 213 336 150 273 1.47e-83 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101300 AT2G23840.1 52.697 241 53 5 94 334 99 278 8.45e-75 232

Find 90 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCATTTGTTTAGAGTTTA+TGG 0.065753 7_3:-31997801 Msa1101300:CDS
GTGATGGCTTGTCTGGTTTC+AGG 0.083001 7_3:-31998140 Msa1101300:CDS
AAGAGTTCTGACCGCGAAAA+AGG 0.223811 7_3:-31992377 Msa1101300:CDS
ATTGACCTTCTCATTCTTAC+TGG 0.252895 7_3:-31995865 Msa1101300:CDS
TAAACAATGCTATTCAATAT+TGG 0.260654 7_3:-31992163 Msa1101300:three_prime_UTR
TTTCTTCTTCTATCTATAAT+GGG 0.279334 7_3:-31998537 Msa1101300:five_prime_UTR
AAACAATGCTATTCAATATT+GGG 0.305813 7_3:-31992162 Msa1101300:three_prime_UTR
GTAACTTGTTCTTCTCTTGT+GGG 0.315212 7_3:+31998341 None:intergenic
CTTAGAGCTGCTGCTGTTAG+AGG 0.315554 7_3:+31992397 None:intergenic
TCTATATACCAGCTGTCTTA+AGG 0.324607 7_3:-31997374 Msa1101300:CDS
TCCTTTCTTTGAGTTGCATC+TGG 0.332427 7_3:+31992721 None:intergenic
TTGTGTTGGATATATCTTAC+AGG 0.338812 7_3:-31998113 Msa1101300:intron
CGCTTGAAGCTTCTCTTCAA+TGG 0.357051 7_3:-31998393 Msa1101300:CDS
CTATATACCAGCTGTCTTAA+GGG 0.359416 7_3:-31997373 Msa1101300:intron
CTTAGAACCATGGGTTAGTC+TGG 0.376373 7_3:-31992318 Msa1101300:exon
TGATGGCTTGTCTGGTTTCA+GGG 0.383664 7_3:-31998139 Msa1101300:CDS
TGTAACTTGTTCTTCTCTTG+TGG 0.389234 7_3:+31998340 None:intergenic
TTCATCATGAACACCTTCAC+TGG 0.398644 7_3:+31998227 None:intergenic
TTTGATGGTGATGGCTTGTC+TGG 0.398764 7_3:-31998147 Msa1101300:CDS
CTGCCTAATGTATGTTATGA+TGG 0.406561 7_3:-31992110 Msa1101300:three_prime_UTR
TTCTGCTTTGCTAACTAAGA+TGG 0.407105 7_3:+31995909 None:intergenic
ATTAACATTTCATCATCAAT+TGG 0.407496 7_3:+31992188 None:intergenic
GCGAGAATGTCATAGTCCTT+TGG 0.424618 7_3:+31992424 None:intergenic
CTCCATAAACTCTAAACAAA+TGG 0.426039 7_3:+31997799 None:intergenic
CATTGTCCACCCACTGCAGC+TGG 0.438963 7_3:+31994817 None:intergenic
AAAGAGAATCGTAGCGTGTC+TGG 0.442688 7_3:+31992267 None:intergenic
TGTGTATATGCAGAACTATC+TGG 0.456701 7_3:-31997075 Msa1101300:intron
AACACTTCCCTTTGCTTCTG+AGG 0.456712 7_3:+31998268 None:intergenic
GATGATGATGATGTATTTGA+TGG 0.457857 7_3:-31998162 Msa1101300:CDS
GAAAGGACGAAAGTCCTTAG+AGG 0.463003 7_3:-31992705 Msa1101300:CDS
GATGGCTCAGACCTTCTCAT+TGG 0.466843 7_3:-31992092 Msa1101300:three_prime_UTR
AGATACTGACGCCATTCATC+AGG 0.493348 7_3:+31992349 None:intergenic
TGGTTTCAGGGGTCTTGTGT+TGG 0.497610 7_3:-31998127 Msa1101300:CDS
GGCCAGTCAATGTTGTATGC+TGG 0.505235 7_3:-31997829 Msa1101300:CDS
TTTAAGACTAAATAACCAAA+GGG 0.509409 7_3:-31998441 Msa1101300:five_prime_UTR
TTCTTCTTCTATCTATAATG+GGG 0.511468 7_3:-31998536 Msa1101300:five_prime_UTR
TTCCAGCATACAACATTGAC+TGG 0.512985 7_3:+31997827 None:intergenic
GAGCCATCATAACATACATT+AGG 0.513459 7_3:+31992107 None:intergenic
CAAGTACAAAATATCTCTGT+AGG 0.517369 7_3:-31998493 Msa1101300:five_prime_UTR
TCACGTTGTGCCAGCTGCAG+TGG 0.517496 7_3:-31994827 Msa1101300:CDS
AAGAAGATATCAGTGAAAAG+AGG 0.518700 7_3:-31995888 Msa1101300:CDS
GTGAACTGTGCCATACCCTT+TGG 0.522077 7_3:+31998426 None:intergenic
AGCTGCTGCTGTTAGAGGTA+TGG 0.522365 7_3:+31992402 None:intergenic
TAAGTTCCTCTTAGAACCAT+GGG 0.522559 7_3:-31992327 Msa1101300:exon
AAAAGGGCACACCTGATGAA+TGG 0.523171 7_3:-31992360 Msa1101300:CDS
TCATTGGTATGTAATAGTCT+TGG 0.523560 7_3:-31992076 Msa1101300:three_prime_UTR
TTGTTTAGAGTTTATGGAGA+AGG 0.524127 7_3:-31997795 Msa1101300:intron
GATGGCTTGTCTGGTTTCAG+GGG 0.524722 7_3:-31998138 Msa1101300:CDS
TGGTATATAGAAAGATCCAC+TGG 0.525235 7_3:+31997386 None:intergenic
CTTCATACCTCAGAAGCAAA+GGG 0.531192 7_3:-31998275 Msa1101300:CDS
CAGTGGGTGGACAATGGACA+TGG 0.531472 7_3:-31994810 Msa1101300:CDS
GACTAACCCATGGTTCTAAG+AGG 0.532292 7_3:+31992321 None:intergenic
TCCAGATGCAACTCAAAGAA+AGG 0.539778 7_3:-31992722 Msa1101300:CDS
TCTCATTCTTACTGGAACAG+TGG 0.540904 7_3:-31995857 Msa1101300:intron
AGAAACTGTGTCATCTCTCA+TGG 0.541184 7_3:-31998370 Msa1101300:CDS
AGAACCATGGGTTAGTCTGG+TGG 0.542942 7_3:-31992315 Msa1101300:three_prime_UTR
TCTTCATACCTCAGAAGCAA+AGG 0.544774 7_3:-31998276 Msa1101300:CDS
CTAAGTTCCTCTTAGAACCA+TGG 0.545502 7_3:-31992328 Msa1101300:exon
GACTAAATAACCAAAGGGTA+TGG 0.548580 7_3:-31998436 Msa1101300:exon
CACGTTGTGCCAGCTGCAGT+GGG 0.556043 7_3:-31994826 Msa1101300:CDS
GATGAGAGGGTTAAATTCTG+AGG 0.562388 7_3:+31992021 None:intergenic
GGACATACCCTTAAGACAGC+TGG 0.563393 7_3:+31997366 None:intergenic
TAGTCAAGAACAGTCTTAGT+CGG 0.564841 7_3:-31995603 Msa1101300:CDS
GATGATGTATTTGATGGTGA+TGG 0.576113 7_3:-31998156 Msa1101300:CDS
TGAATATGATTCTGTTGATG+AGG 0.582241 7_3:-31998190 Msa1101300:CDS
TGCAAACATAATAGATGAGA+GGG 0.585007 7_3:+31992008 None:intergenic
CTTACAATAACCTATTTGTG+AGG 0.588278 7_3:+31992216 None:intergenic
AGCTGGCACAACGTGATCGA+TGG 0.589820 7_3:+31994834 None:intergenic
GCTGAGGCACGTCCCAGTGA+AGG 0.590374 7_3:-31998240 Msa1101300:CDS
TCTTGTTATTCAGAAACCAA+AGG 0.601581 7_3:-31992440 Msa1101300:intron
ATGCAAACATAATAGATGAG+AGG 0.611965 7_3:+31992007 None:intergenic
CAGCTGCAGTGGGTGGACAA+TGG 0.613401 7_3:-31994816 Msa1101300:CDS
GAAGTTGATTAAGGTCCCAA+AGG 0.616973 7_3:-31992672 Msa1101300:intron
ATCTGGTAATAACCCTTGCA+TGG 0.619001 7_3:-31997058 Msa1101300:CDS
ACTATTACATACCAATGAGA+AGG 0.620219 7_3:+31992081 None:intergenic
AAGAGAAGAACAAGTTACAA+AGG 0.622533 7_3:-31998336 Msa1101300:CDS
GTTGTGCCAGCTGCAGTGGG+TGG 0.629063 7_3:-31994823 Msa1101300:CDS
ATGGCACAGTTCACTGCACA+AGG 0.629424 7_3:-31998417 Msa1101300:CDS
AGGGAAGTGTTGTAATGCTG+AGG 0.635804 7_3:-31998256 Msa1101300:CDS
GCGTGTCTGGCATCACACAC+AGG 0.640173 7_3:+31992280 None:intergenic
CCTTGCATGGTGGAAAAGTG+AGG 0.643001 7_3:-31997045 Msa1101300:CDS
CTGTTCCAGTAAGAATGAGA+AGG 0.658419 7_3:+31995860 None:intergenic
TCATCATGAACACCTTCACT+GGG 0.662574 7_3:+31998228 None:intergenic
TGGTAATAACCCTTGCATGG+TGG 0.665531 7_3:-31997055 Msa1101300:CDS
GGTATATAGAAAGATCCACT+GGG 0.672250 7_3:+31997387 None:intergenic
TGAGGTATGAAGAAGATGCA+TGG 0.700753 7_3:+31998286 None:intergenic
AGTGGGTGGACAATGGACAT+GGG 0.715330 7_3:-31994809 Msa1101300:CDS
GCAACCACCAGACTAACCCA+TGG 0.719996 7_3:+31992311 None:intergenic
TATATAGAAAGATCCACTGG+GGG 0.730035 7_3:+31997389 None:intergenic
GTATATAGAAAGATCCACTG+GGG 0.764928 7_3:+31997388 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTCATAAAGTAAA+CGG - chr7_3:31997598-31997617 Msa1101300:intron 10.0%
!! TAATTATTAAATGGTAATTA+AGG + chr7_3:31997828-31997847 None:intergenic 10.0%
!! TTTATGAAATTATATAAGCT+TGG + chr7_3:31992624-31992643 None:intergenic 15.0%
!!! TGTATTTTGTTGTTATAAAA+TGG - chr7_3:31993391-31993410 Msa1101300:intron 15.0%
!!! AAACATGTATACTATTTTAT+TGG - chr7_3:31993632-31993651 Msa1101300:intron 15.0%
!! ACAATTATTAAACCATTAAA+TGG - chr7_3:31994528-31994547 Msa1101300:intron 15.0%
!! AATATAAATGTATAAGAACA+GGG + chr7_3:31995173-31995192 None:intergenic 15.0%
!! TAATATAAATGTATAAGAAC+AGG + chr7_3:31995174-31995193 None:intergenic 15.0%
!!! TTTTTTGTAATTATAGTATC+CGG - chr7_3:31995292-31995311 Msa1101300:intron 15.0%
!! TTAATTAGTTAAATAGATAC+TGG - chr7_3:31996163-31996182 Msa1101300:intron 15.0%
!! TAATTAGTTAAATAGATACT+GGG - chr7_3:31996164-31996183 Msa1101300:intron 15.0%
!!! CCTTTTATATTAAAAATGAA+TGG + chr7_3:31997019-31997038 None:intergenic 15.0%
!!! CCATTCATTTTTAATATAAA+AGG - chr7_3:31997016-31997035 Msa1101300:CDS 15.0%
!!! ATTTTTAATATAAAAGGATC+TGG - chr7_3:31997022-31997041 Msa1101300:CDS 15.0%
!! ATTGCAGATTAATTATTAAA+TGG + chr7_3:31997837-31997856 None:intergenic 15.0%
!!! TAATCTGTAATGATATTTTT+TGG - chr7_3:31997878-31997897 Msa1101300:intron 15.0%
!!! CTTTTAATGTAATTAAAACT+TGG + chr7_3:31998101-31998120 None:intergenic 15.0%
!! AAAGAAAAATATTTGTGTCA+CGG + chr7_3:31992030-31992049 None:intergenic 20.0%
!! AGCAAAAACATTGAAATTTA+AGG + chr7_3:31992074-31992093 None:intergenic 20.0%
!!! TTTTCTTCTTCTATCTATAA+TGG - chr7_3:31992102-31992121 Msa1101300:three_prime_UTR 20.0%
!! TTTCTTCTTCTATCTATAAT+GGG - chr7_3:31992103-31992122 Msa1101300:three_prime_UTR 20.0%
!!! TTTTAAGACTAAATAACCAA+AGG - chr7_3:31992198-31992217 Msa1101300:three_prime_UTR 20.0%
!!! TTTAAGACTAAATAACCAAA+GGG - chr7_3:31992199-31992218 Msa1101300:three_prime_UTR 20.0%
!!! AAACAAAATTGATAATGAGT+TGG - chr7_3:31992649-31992668 Msa1101300:intron 20.0%
!!! ATTTCAGATTTTGTTTATAC+AGG - chr7_3:31993192-31993211 Msa1101300:intron 20.0%
!!! ATAAACCAAAAGTATTACTT+CGG + chr7_3:31993305-31993324 None:intergenic 20.0%
!! GTTTAATAATTGTCATTCTT+GGG + chr7_3:31994521-31994540 None:intergenic 20.0%
!! ATTATTAAACCATTAAATGG+TGG - chr7_3:31994531-31994550 Msa1101300:intron 20.0%
!! ATAACAATGTAATATGAGAA+GGG + chr7_3:31995584-31995603 None:intergenic 20.0%
!! CAAAAAATATTCTAATGCAA+TGG - chr7_3:31995675-31995694 Msa1101300:intron 20.0%
!!! ATACTAAATTTTACAAAAGG+AGG + chr7_3:31995919-31995938 None:intergenic 20.0%
!!! TGCATACTAAATTTTACAAA+AGG + chr7_3:31995922-31995941 None:intergenic 20.0%
!! AGAAAATAATCAATTCTGTT+AGG - chr7_3:31996082-31996101 Msa1101300:intron 20.0%
!! AATTAGTTAAATAGATACTG+GGG - chr7_3:31996165-31996184 Msa1101300:intron 20.0%
!!! ATTTGATTAGTTGTTTTGAA+AGG - chr7_3:31996217-31996236 Msa1101300:intron 20.0%
!!! ATTTTCTATTTCAATTTCTC+CGG - chr7_3:31996315-31996334 Msa1101300:intron 20.0%
!! AAAATCATCAGGTTTAAAAA+TGG - chr7_3:31996472-31996491 Msa1101300:intron 20.0%
!! TTACTATTTGTTCTTGATTT+AGG + chr7_3:31996709-31996728 None:intergenic 20.0%
!!! TTAGATTATAAGTTGATCAT+AGG - chr7_3:31996773-31996792 Msa1101300:intron 20.0%
!!! GTTAATTGTTTCTTGTAAAA+AGG + chr7_3:31996857-31996876 None:intergenic 20.0%
!! CATTGAATAATTTATGTATG+TGG - chr7_3:31996887-31996906 Msa1101300:intron 20.0%
!! CATTGAATAATTTATGTATC+TGG + chr7_3:31996926-31996945 None:intergenic 20.0%
!!! GTCAATTGTTACTTATATAT+AGG - chr7_3:31996956-31996975 Msa1101300:intron 20.0%
!!! AAGAGAATATTTCTACTTTT+GGG + chr7_3:31997703-31997722 None:intergenic 20.0%
!!! TAAGAGAATATTTCTACTTT+TGG + chr7_3:31997704-31997723 None:intergenic 20.0%
!! ATTAAATGGTAATTAAGGTA+GGG + chr7_3:31997823-31997842 None:intergenic 20.0%
!! TATTAAATGGTAATTAAGGT+AGG + chr7_3:31997824-31997843 None:intergenic 20.0%
!! ATTAACATTTCATCATCAAT+TGG + chr7_3:31998455-31998474 None:intergenic 20.0%
!! TAAACAATGCTATTCAATAT+TGG - chr7_3:31998477-31998496 Msa1101300:five_prime_UTR 20.0%
!! AAACAATGCTATTCAATATT+GGG - chr7_3:31998478-31998497 Msa1101300:five_prime_UTR 20.0%
! TTCTTCTTCTATCTATAATG+GGG - chr7_3:31992104-31992123 Msa1101300:three_prime_UTR 25.0%
! ATGTATAGTTTAAAAAACCG+TGG - chr7_3:31992949-31992968 Msa1101300:intron 25.0%
!! ACTAGGAACCATTTTATATA+CGG + chr7_3:31993448-31993467 None:intergenic 25.0%
!! CATGTATACTATTTTATTGG+TGG - chr7_3:31993635-31993654 Msa1101300:intron 25.0%
!! TATACTATTTTATTGGTGGA+AGG - chr7_3:31993639-31993658 Msa1101300:intron 25.0%
! TTACTTTAGTAGGTTTACAT+GGG + chr7_3:31994068-31994087 None:intergenic 25.0%
! ATTACTTTAGTAGGTTTACA+TGG + chr7_3:31994069-31994088 None:intergenic 25.0%
!! GCTTTTAAACTTCTACATAT+GGG + chr7_3:31994154-31994173 None:intergenic 25.0%
!! TGCTTTTAAACTTCTACATA+TGG + chr7_3:31994155-31994174 None:intergenic 25.0%
!!! TTGTTATTTAAACTGCTACA+CGG + chr7_3:31994293-31994312 None:intergenic 25.0%
!! ACTATATTATGTGCTATTGA+TGG - chr7_3:31994353-31994372 Msa1101300:intron 25.0%
! ATAACAACATAGTTCATTCA+TGG + chr7_3:31994397-31994416 None:intergenic 25.0%
! TGATATCTAAAAACAAGTTC+CGG + chr7_3:31994483-31994502 None:intergenic 25.0%
! GGTTTAATAATTGTCATTCT+TGG + chr7_3:31994522-31994541 None:intergenic 25.0%
! TTAGTAAATCCACCATTTAA+TGG + chr7_3:31994543-31994562 None:intergenic 25.0%
!! GAATTATCATGATTGTTTCT+TGG - chr7_3:31994666-31994685 Msa1101300:intron 25.0%
!! AGCTCAACATATACTTATTT+TGG - chr7_3:31994972-31994991 Msa1101300:intron 25.0%
! ACTTCGATTTCAAATATATC+TGG - chr7_3:31995114-31995133 Msa1101300:intron 25.0%
! TTATATTAGATTCGATGAGA+CGG - chr7_3:31995186-31995205 Msa1101300:intron 25.0%
!! ATAAAGGATCTATGATTTTC+TGG + chr7_3:31995458-31995477 None:intergenic 25.0%
!!! TTGACTTTGTTGTTATGTAT+TGG - chr7_3:31995480-31995499 Msa1101300:intron 25.0%
! TAACAATGTAATATGAGAAG+GGG + chr7_3:31995583-31995602 None:intergenic 25.0%
! CATAACAATGTAATATGAGA+AGG + chr7_3:31995585-31995604 None:intergenic 25.0%
! AGTAATTAGAAAACTTTGAG+CGG - chr7_3:31996122-31996141 Msa1101300:intron 25.0%
!! TTTTCTATTTCAATTTCTCC+GGG - chr7_3:31996316-31996335 Msa1101300:intron 25.0%
! GAAATAATTTGAAAGTAACC+CGG + chr7_3:31996337-31996356 None:intergenic 25.0%
! ATTGCAATACAGTTTAAACT+TGG + chr7_3:31996412-31996431 None:intergenic 25.0%
!! GTGAGATTTTAGATAAAAAG+AGG - chr7_3:31996579-31996598 Msa1101300:intron 25.0%
! TCTATGAATCTCTATAAGTA+GGG + chr7_3:31996680-31996699 None:intergenic 25.0%
! CGTATCTTAGATTATTTCAT+AGG + chr7_3:31996752-31996771 None:intergenic 25.0%
!! TTGTTTCTTGTAAAAAGGAT+CGG + chr7_3:31996852-31996871 None:intergenic 25.0%
! AATATAAGAAAATACTCCTC+TGG + chr7_3:31996983-31997002 None:intergenic 25.0%
! GATGACAAAATAAGAATGAA+AGG - chr7_3:31997061-31997080 Msa1101300:CDS 25.0%
! AAAACTGGAAGAGAATTATA+AGG - chr7_3:31997136-31997155 Msa1101300:intron 25.0%
!!! GTTAATTTTAAAAGCTCACA+AGG + chr7_3:31997552-31997571 None:intergenic 25.0%
! AGAAATCAGTTAGAAAGTTA+AGG + chr7_3:31997626-31997645 None:intergenic 25.0%
!!! TGATTTCTAGTTTACCTTAA+TGG - chr7_3:31997638-31997657 Msa1101300:intron 25.0%
!!! GATTTCTAGTTTACCTTAAT+GGG - chr7_3:31997639-31997658 Msa1101300:intron 25.0%
!!! GTAATGATATTTTTTGGTAC+AGG - chr7_3:31997884-31997903 Msa1101300:intron 25.0%
!! AGCAAAAATGAAGTTGATTA+AGG - chr7_3:31997959-31997978 Msa1101300:intron 25.0%
! AAACTTGGAATTCTTAACAT+TGG + chr7_3:31998086-31998105 None:intergenic 25.0%
!!! TACCTATTTTAGCATATTCA+TGG - chr7_3:31998137-31998156 Msa1101300:CDS 25.0%
! AACCATGAATATGCTAAAAT+AGG + chr7_3:31998142-31998161 None:intergenic 25.0%
!!! GATTTTTCTCTTTGCTTTTT+CGG + chr7_3:31998405-31998424 None:intergenic 25.0%
CAAGTACAAAATATCTCTGT+AGG - chr7_3:31992147-31992166 Msa1101300:three_prime_UTR 30.0%
AAGAGAAGAACAAGTTACAA+AGG - chr7_3:31992304-31992323 Msa1101300:three_prime_UTR 30.0%
TGAATATGATTCTGTTGATG+AGG - chr7_3:31992450-31992469 Msa1101300:intron 30.0%
! GATGATGATGATGTATTTGA+TGG - chr7_3:31992478-31992497 Msa1101300:intron 30.0%
TTGTGTTGGATATATCTTAC+AGG - chr7_3:31992527-31992546 Msa1101300:intron 30.0%
! TGCCATTTGTTTAGAGTTTA+TGG - chr7_3:31992839-31992858 Msa1101300:intron 30.0%
CTCCATAAACTCTAAACAAA+TGG + chr7_3:31992844-31992863 None:intergenic 30.0%
! TTGTTTAGAGTTTATGGAGA+AGG - chr7_3:31992845-31992864 Msa1101300:intron 30.0%
!! CTTCAACATTCTAAAATCAC+TGG - chr7_3:31993342-31993361 Msa1101300:intron 30.0%
ATTCTCTTTCACTTGTAACT+AGG + chr7_3:31993419-31993438 None:intergenic 30.0%
!! AAACTGTTGTTTCAGTAACT+AGG + chr7_3:31993465-31993484 None:intergenic 30.0%
ATGTTAGATTGTTAGTTCCT+AGG - chr7_3:31993730-31993749 Msa1101300:intron 30.0%
TCTGTTAGAAAGATAAGAAG+TGG + chr7_3:31993969-31993988 None:intergenic 30.0%
AATCCATAAATCTATCTAGC+TGG + chr7_3:31994010-31994029 None:intergenic 30.0%
CCTACTAAAGTAATCAACTA+CGG - chr7_3:31994075-31994094 Msa1101300:intron 30.0%
ATACCAGTGATTATGAACTA+AGG - chr7_3:31994105-31994124 Msa1101300:intron 30.0%
TACCAGTGATTATGAACTAA+GGG - chr7_3:31994106-31994125 Msa1101300:intron 30.0%
TCCATGTCTACTTATAGAAA+AGG - chr7_3:31994183-31994202 Msa1101300:intron 30.0%
CCATGTCTACTTATAGAAAA+GGG - chr7_3:31994184-31994203 Msa1101300:intron 30.0%
CATGTCTACTTATAGAAAAG+GGG - chr7_3:31994185-31994204 Msa1101300:intron 30.0%
ATGTCTACTTATAGAAAAGG+GGG - chr7_3:31994186-31994205 Msa1101300:intron 30.0%
GGAAGTTGTATTATCAATCT+TGG - chr7_3:31994254-31994273 Msa1101300:intron 30.0%
! TGTTATTTAAACTGCTACAC+GGG + chr7_3:31994292-31994311 None:intergenic 30.0%
AGCACATAATATAGTTTACG+TGG + chr7_3:31994348-31994367 None:intergenic 30.0%
TCATTCTTGGGCAAAATATA+TGG + chr7_3:31994509-31994528 None:intergenic 30.0%
AAGAAGATATCAGTGAAAAG+AGG - chr7_3:31994752-31994771 Msa1101300:intron 30.0%
GTCAGGTATTATATACCTTA+GGG + chr7_3:31994826-31994845 None:intergenic 30.0%
GTTAGAAGTTAGTTCATTTC+TGG + chr7_3:31994848-31994867 None:intergenic 30.0%
ACTTGTAAACAGTAGTTAGA+GGG + chr7_3:31994870-31994889 None:intergenic 30.0%
GTTGTTTGTCTGCTTTAATA+CGG - chr7_3:31994946-31994965 Msa1101300:intron 30.0%
!!! ACATATACTTATTTTGGTGC+AGG - chr7_3:31994978-31994997 Msa1101300:intron 30.0%
AGAATGAGTTCATCAAATTC+CGG + chr7_3:31995314-31995333 None:intergenic 30.0%
AACAACAAAGTCAAGCATAA+AGG + chr7_3:31995474-31995493 None:intergenic 30.0%
ACAGTTCTCAACTATAGAAA+TGG + chr7_3:31995534-31995553 None:intergenic 30.0%
TAGTTGAGAACTGTGTATAA+TGG - chr7_3:31995540-31995559 Msa1101300:intron 30.0%
TTCAATCTCTACTAACTCAA+TGG + chr7_3:31995720-31995739 None:intergenic 30.0%
AGAGCAATACCTGTTATATT+CGG + chr7_3:31995770-31995789 None:intergenic 30.0%
!! AATTACTTTTGCGTCATCTT+TGG + chr7_3:31996109-31996128 None:intergenic 30.0%
! AAGGAAATTGGTTTCTTAGA+TGG + chr7_3:31996500-31996519 None:intergenic 30.0%
TTTGATTGCGAAAAGGAAAT+TGG + chr7_3:31996512-31996531 None:intergenic 30.0%
TCAACAATAACTACAGTTCT+TGG + chr7_3:31996555-31996574 None:intergenic 30.0%
GTCTATGAATCTCTATAAGT+AGG + chr7_3:31996681-31996700 None:intergenic 30.0%
CTTATAGAGATTCATAGACT+CGG - chr7_3:31996682-31996701 Msa1101300:intron 30.0%
TTACTTATATATAGGACCAG+AGG - chr7_3:31996964-31996983 Msa1101300:intron 30.0%
! ATCTGGTTCAAGTTATTAGT+GGG - chr7_3:31997039-31997058 Msa1101300:CDS 30.0%
TGGAATTAAACATCAACCAT+TGG - chr7_3:31997101-31997120 Msa1101300:intron 30.0%
!!! TTTTAACTTTCTGTCACCAA+TGG + chr7_3:31997120-31997139 None:intergenic 30.0%
TAAGGAATGTAGAGAAAACT+AGG - chr7_3:31997154-31997173 Msa1101300:intron 30.0%
ACTATTGAAGTGAATCATTG+TGG - chr7_3:31997403-31997422 Msa1101300:CDS 30.0%
! GAATCATTGTGTGCAAATTT+TGG + chr7_3:31997509-31997528 None:intergenic 30.0%
!! GTTAAGATGAAAGTACCTTT+GGG + chr7_3:31997986-31998005 None:intergenic 30.0%
!! TGTTAAGATGAAAGTACCTT+TGG + chr7_3:31997987-31998006 None:intergenic 30.0%
TATGATGCCTTAGCATAAAA+AGG - chr7_3:31998032-31998051 Msa1101300:intron 30.0%
! ATTGTTGCCTTTTTATGCTA+AGG + chr7_3:31998042-31998061 None:intergenic 30.0%
!! TCTTGTTATTCAGAAACCAA+AGG - chr7_3:31998200-31998219 Msa1101300:CDS 30.0%
AGAGAAAAATCCTCACAAAT+AGG - chr7_3:31998414-31998433 Msa1101300:CDS 30.0%
CTTACAATAACCTATTTGTG+AGG + chr7_3:31998427-31998446 None:intergenic 30.0%
ACTATTACATACCAATGAGA+AGG + chr7_3:31998562-31998581 None:intergenic 30.0%
TCATTGGTATGTAATAGTCT+TGG - chr7_3:31998564-31998583 Msa1101300:five_prime_UTR 30.0%
GACTAAATAACCAAAGGGTA+TGG - chr7_3:31992204-31992223 Msa1101300:three_prime_UTR 35.0%
!! GTAACTTGTTCTTCTCTTGT+GGG + chr7_3:31992302-31992321 None:intergenic 35.0%
!! TGTAACTTGTTCTTCTCTTG+TGG + chr7_3:31992303-31992322 None:intergenic 35.0%
!! GATGATGTATTTGATGGTGA+TGG - chr7_3:31992484-31992503 Msa1101300:intron 35.0%
TCAGCAGAAGTCTTGAATAT+TGG + chr7_3:31992751-31992770 None:intergenic 35.0%
CTCAGCTTAATGAAACTAAC+AGG + chr7_3:31993048-31993067 None:intergenic 35.0%
TATATAGAAAGATCCACTGG+GGG + chr7_3:31993254-31993273 None:intergenic 35.0%
GTATATAGAAAGATCCACTG+GGG + chr7_3:31993255-31993274 None:intergenic 35.0%
GGTATATAGAAAGATCCACT+GGG + chr7_3:31993256-31993275 None:intergenic 35.0%
TGGTATATAGAAAGATCCAC+TGG + chr7_3:31993257-31993276 None:intergenic 35.0%
TCTATATACCAGCTGTCTTA+AGG - chr7_3:31993266-31993285 Msa1101300:intron 35.0%
CTATATACCAGCTGTCTTAA+GGG - chr7_3:31993267-31993286 Msa1101300:intron 35.0%
!! ACCAAAAGTATTACTTCGGA+GGG + chr7_3:31993301-31993320 None:intergenic 35.0%
!! AACCAAAAGTATTACTTCGG+AGG + chr7_3:31993302-31993321 None:intergenic 35.0%
ATGACTCGCCGTATATAAAA+TGG - chr7_3:31993437-31993456 Msa1101300:intron 35.0%
GCATATACACAGTTGTTAGA+GGG + chr7_3:31993556-31993575 None:intergenic 35.0%
TGCATATACACAGTTGTTAG+AGG + chr7_3:31993557-31993576 None:intergenic 35.0%
TGTGTATATGCAGAACTATC+TGG - chr7_3:31993565-31993584 Msa1101300:intron 35.0%
! TTTTATTGGTGGAAGGTAGA+AGG - chr7_3:31993646-31993665 Msa1101300:intron 35.0%
TTTATTGGTGGAAGGTAGAA+GGG - chr7_3:31993647-31993666 Msa1101300:intron 35.0%
GTCTATCCATAGAAAAACTC+TGG + chr7_3:31993687-31993706 None:intergenic 35.0%
GTTTAGTAAACATGACCAAG+AGG + chr7_3:31993838-31993857 None:intergenic 35.0%
TCAACAAAATGTTAGGTGAG+GGG + chr7_3:31993868-31993887 None:intergenic 35.0%
GTCAACAAAATGTTAGGTGA+GGG + chr7_3:31993869-31993888 None:intergenic 35.0%
AGACTCGTCAACAAAATGTT+AGG + chr7_3:31993875-31993894 None:intergenic 35.0%
CTCTTTCAAAGCTTTCAAAG+GGG + chr7_3:31993922-31993941 None:intergenic 35.0%
CCTCTTTCAAAGCTTTCAAA+GGG + chr7_3:31993923-31993942 None:intergenic 35.0%
!! CCTTTGAAAGCTTTGAAAGA+GGG - chr7_3:31993921-31993940 Msa1101300:intron 35.0%
AGAAAGATAAGAAGTGGTCA+TGG + chr7_3:31993963-31993982 None:intergenic 35.0%
CAACCAGCTAGATAGATTTA+TGG - chr7_3:31994004-31994023 Msa1101300:intron 35.0%
CCGTAGTTGATTACTTTAGT+AGG + chr7_3:31994078-31994097 None:intergenic 35.0%
TGAACTAAGGGCAGTAAAAA+TGG - chr7_3:31994118-31994137 Msa1101300:intron 35.0%
AACTTCTACATATGGGTCTT+TGG + chr7_3:31994147-31994166 None:intergenic 35.0%
! CCCTTTTCTATAAGTAGACA+TGG + chr7_3:31994187-31994206 None:intergenic 35.0%
CTTTCGTAGTTATGAAAGCT+GGG - chr7_3:31994419-31994438 Msa1101300:intron 35.0%
TAAAAACAAGTTCCGGTTCA+TGG + chr7_3:31994476-31994495 None:intergenic 35.0%
TCTCCAGGATGAACATAATA+CGG - chr7_3:31994579-31994598 Msa1101300:intron 35.0%
GTTTCTTGGCATTATGAGAA+TGG - chr7_3:31994680-31994699 Msa1101300:intron 35.0%
TTCTGCTTTGCTAACTAAGA+TGG + chr7_3:31994734-31994753 None:intergenic 35.0%
ATTGACCTTCTCATTCTTAC+TGG - chr7_3:31994775-31994794 Msa1101300:intron 35.0%
TTGCACACATATATACCCTA+AGG - chr7_3:31994808-31994827 Msa1101300:CDS 35.0%
GGTCAGGTATTATATACCTT+AGG + chr7_3:31994827-31994846 None:intergenic 35.0%
!! AAGTTAGTTCATTTCTGGTC+AGG + chr7_3:31994843-31994862 None:intergenic 35.0%
CACTTGTAAACAGTAGTTAG+AGG + chr7_3:31994871-31994890 None:intergenic 35.0%
CTCTAACTACTGTTTACAAG+TGG - chr7_3:31994869-31994888 Msa1101300:intron 35.0%
TAGTCAAGAACAGTCTTAGT+CGG - chr7_3:31995037-31995056 Msa1101300:intron 35.0%
! ATATTAGAGCACTTACTGAC+AGG + chr7_3:31995091-31995110 None:intergenic 35.0%
TCAATGAGTGAGAACAATAG+TGG + chr7_3:31995338-31995357 None:intergenic 35.0%
! TTAGCCTACTTTGCCTTTTA+GGG + chr7_3:31995428-31995447 None:intergenic 35.0%
! TTTAGCCTACTTTGCCTTTT+AGG + chr7_3:31995429-31995448 None:intergenic 35.0%
AGAAATGGTATATTCGTGCT+AGG + chr7_3:31995519-31995538 None:intergenic 35.0%
GATTACCTTCCGAATATAAC+AGG - chr7_3:31995758-31995777 Msa1101300:intron 35.0%
CAATACCTGTTATATTCGGA+AGG + chr7_3:31995766-31995785 None:intergenic 35.0%
AAACTGATACAGTTTCAGCT+TGG - chr7_3:31996033-31996052 Msa1101300:intron 35.0%
TAAATAGATACTGGGGAACA+TGG - chr7_3:31996172-31996191 Msa1101300:intron 35.0%
AAATAGATACTGGGGAACAT+GGG - chr7_3:31996173-31996192 Msa1101300:intron 35.0%
! TTATTTCTTGAGCTGTTGTG+TGG - chr7_3:31996350-31996369 Msa1101300:intron 35.0%
! AACATTTTCAGCAACCCAAT+AGG + chr7_3:31996376-31996395 None:intergenic 35.0%
AGTCGAACATCAAAATCATC+AGG - chr7_3:31996461-31996480 Msa1101300:intron 35.0%
GAATCTCTATAAGTAGGGAT+TGG + chr7_3:31996675-31996694 None:intergenic 35.0%
TTCTTGTAAAAAGGATCGGA+GGG + chr7_3:31996848-31996867 None:intergenic 35.0%
TTTCTTGTAAAAAGGATCGG+AGG + chr7_3:31996849-31996868 None:intergenic 35.0%
! GATCTGGTTCAAGTTATTAG+TGG - chr7_3:31997038-31997057 Msa1101300:CDS 35.0%
TGGTGACAGAAAGTTAAAAC+TGG - chr7_3:31997121-31997140 Msa1101300:intron 35.0%
TCTCACTAGCAACATTGTAT+TGG + chr7_3:31997186-31997205 None:intergenic 35.0%
TTGCTAGTGAGATGAGAAAT+AGG - chr7_3:31997194-31997213 Msa1101300:intron 35.0%
ATGGTAATTAAGGTAGGGAA+AGG + chr7_3:31997818-31997837 None:intergenic 35.0%
!! CTTCATTTTTGCTTCCTCTA+AGG + chr7_3:31997952-31997971 None:intergenic 35.0%
AACAATATAGCTACCAAGGA+AGG - chr7_3:31998056-31998075 Msa1101300:intron 35.0%
ACAATATAGCTACCAAGGAA+GGG - chr7_3:31998057-31998076 Msa1101300:intron 35.0%
TAAGTTCCTCTTAGAACCAT+GGG - chr7_3:31998313-31998332 Msa1101300:CDS 35.0%
CTGCCTAATGTATGTTATGA+TGG - chr7_3:31998530-31998549 Msa1101300:five_prime_UTR 35.0%
GAGCCATCATAACATACATT+AGG + chr7_3:31998536-31998555 None:intergenic 35.0%
AGAAACTGTGTCATCTCTCA+TGG - chr7_3:31992270-31992289 Msa1101300:three_prime_UTR 40.0%
TGAGGTATGAAGAAGATGCA+TGG + chr7_3:31992357-31992376 None:intergenic 40.0%
TCTTCATACCTCAGAAGCAA+AGG - chr7_3:31992364-31992383 Msa1101300:CDS 40.0%
CTTCATACCTCAGAAGCAAA+GGG - chr7_3:31992365-31992384 Msa1101300:CDS 40.0%
TCATCATGAACACCTTCACT+GGG + chr7_3:31992415-31992434 None:intergenic 40.0%
TTCATCATGAACACCTTCAC+TGG + chr7_3:31992416-31992435 None:intergenic 40.0%
TCTGCTGAGTTGTTTGCTTA+TGG - chr7_3:31992763-31992782 Msa1101300:intron 40.0%
TTCCAGCATACAACATTGAC+TGG + chr7_3:31992816-31992835 None:intergenic 40.0%
TCTCTTAGCTAGTATCACCA+CGG + chr7_3:31992969-31992988 None:intergenic 40.0%
TTAAGCTGAGCTTATTTCCC+AGG - chr7_3:31993058-31993077 Msa1101300:intron 40.0%
!! AAAAGTATTACTTCGGAGGG+TGG + chr7_3:31993298-31993317 None:intergenic 40.0%
! ACCCTCCGAAGTAATACTTT+TGG - chr7_3:31993297-31993316 Msa1101300:intron 40.0%
TATATACCTGACAGTACTGC+AGG - chr7_3:31993495-31993514 Msa1101300:intron 40.0%
ATATACCTGACAGTACTGCA+GGG - chr7_3:31993496-31993515 Msa1101300:intron 40.0%
ATACACAGTTGTTAGAGGGT+TGG + chr7_3:31993552-31993571 None:intergenic 40.0%
ATCTGGTAATAACCCTTGCA+TGG - chr7_3:31993582-31993601 Msa1101300:intron 40.0%
TTATTGGTGGAAGGTAGAAG+GGG - chr7_3:31993648-31993667 Msa1101300:intron 40.0%
AGTACTAACCAAGAGGTCTA+AGG + chr7_3:31993762-31993781 None:intergenic 40.0%
!! TAGAAGGAGTACTAACCAAG+AGG + chr7_3:31993769-31993788 None:intergenic 40.0%
TACTCCTTCTACTATCTAGC+TGG - chr7_3:31993778-31993797 Msa1101300:intron 40.0%
CAAACCAGCTAGATAGTAGA+AGG + chr7_3:31993785-31993804 None:intergenic 40.0%
TGGTTTGAACCTTAGTTCCT+AGG - chr7_3:31993798-31993817 Msa1101300:intron 40.0%
AGGTTCAAACCTAGGAACTA+AGG + chr7_3:31993742-31993761 None:intergenic 40.0%
AGGTAGTAAGGTTCAAACCT+AGG + chr7_3:31993818-31993837 None:intergenic 40.0%
GTTTGAACCTTACTACCTCT+TGG - chr7_3:31993820-31993839 Msa1101300:intron 40.0%
AACATGACCAAGAGGTAGTA+AGG + chr7_3:31993830-31993849 None:intergenic 40.0%
CGTCAACAAAATGTTAGGTG+AGG + chr7_3:31993870-31993889 None:intergenic 40.0%
TTCAAAGGGGTCTACCATTA+AGG + chr7_3:31993909-31993928 None:intergenic 40.0%
!! CCCTTTGAAAGCTTTGAAAG+AGG - chr7_3:31993920-31993939 Msa1101300:intron 40.0%
CCCTCTTTCAAAGCTTTCAA+AGG + chr7_3:31993924-31993943 None:intergenic 40.0%
CTTTAGTAGGTTTACATGGG+TGG + chr7_3:31994065-31994084 None:intergenic 40.0%
TGCCCTTAGTTCATAATCAC+TGG + chr7_3:31994111-31994130 None:intergenic 40.0%
CTACTTATAGAAAAGGGGGT+TGG - chr7_3:31994190-31994209 Msa1101300:intron 40.0%
! GGTTGGATTCTCTTTTGTGA+AGG - chr7_3:31994207-31994226 Msa1101300:intron 40.0%
!! TGAGAGTACTAGATTGCAAG+AGG - chr7_3:31994233-31994252 Msa1101300:intron 40.0%
CCAGCTTTCATAACTACGAA+AGG + chr7_3:31994421-31994440 None:intergenic 40.0%
CCTTTCGTAGTTATGAAAGC+TGG - chr7_3:31994418-31994437 Msa1101300:intron 40.0%
AGTACTTTCCATCCATGAAC+CGG - chr7_3:31994461-31994480 Msa1101300:intron 40.0%
CTCCAGGATGAACATAATAC+GGG - chr7_3:31994580-31994599 Msa1101300:intron 40.0%
ATCCCGTATTATGTTCATCC+TGG + chr7_3:31994585-31994604 None:intergenic 40.0%
!! GGGATCTCTGTATTTTGAGA+GGG - chr7_3:31994600-31994619 Msa1101300:intron 40.0%
CTGTTCCAGTAAGAATGAGA+AGG + chr7_3:31994783-31994802 None:intergenic 40.0%
TCTCATTCTTACTGGAACAG+TGG - chr7_3:31994783-31994802 Msa1101300:intron 40.0%
ATGATTTCTGAGCAAGGAAC+TGG + chr7_3:31995380-31995399 None:intergenic 40.0%
GTTCCTTGCTCAGAAATCAT+AGG - chr7_3:31995380-31995399 Msa1101300:intron 40.0%
! TAGCCTACTTTGCCTTTTAG+GGG + chr7_3:31995427-31995446 None:intergenic 40.0%
ATGGTATATTCGTGCTAGGT+AGG + chr7_3:31995515-31995534 None:intergenic 40.0%
GGTAATCTCTTGTCAATGCA+AGG + chr7_3:31995745-31995764 None:intergenic 40.0%
TTTCGTAATTGAAGTCCGTC+TGG - chr7_3:31995968-31995987 Msa1101300:intron 40.0%
CACATGATAAAACAGCCAGA+CGG + chr7_3:31995986-31996005 None:intergenic 40.0%
AATAGATACTGGGGAACATG+GGG - chr7_3:31996174-31996193 Msa1101300:intron 40.0%
!! TTGTGGCTTTGATTGCGAAA+AGG + chr7_3:31996519-31996538 None:intergenic 40.0%
AGGACATGATACATCATCGA+TGG - chr7_3:31997081-31997100 Msa1101300:intron 40.0%
AGCTAGAGATGATGCATTTC+TGG - chr7_3:31997446-31997465 Msa1101300:intron 40.0%
CAAGTTAGCATGACCCATTA+AGG + chr7_3:31997655-31997674 None:intergenic 40.0%
TTGCTTAATATGTGCCCTCA+GGG + chr7_3:31997680-31997699 None:intergenic 40.0%
ATTAAGGTAGGGAAAGGCTA+AGG + chr7_3:31997812-31997831 None:intergenic 40.0%
TCCAGATGCAACTCAAAGAA+AGG - chr7_3:31997918-31997937 Msa1101300:intron 40.0%
!! TCCTTTCTTTGAGTTGCATC+TGG + chr7_3:31997922-31997941 None:intergenic 40.0%
! GAAGTTGATTAAGGTCCCAA+AGG - chr7_3:31997968-31997987 Msa1101300:intron 40.0%
AGGCAACAATATAGCTACCA+AGG - chr7_3:31998052-31998071 Msa1101300:intron 40.0%
CTAAGTTCCTCTTAGAACCA+TGG - chr7_3:31998312-31998331 Msa1101300:CDS 40.0%
GATGAGAGGGTTAAATTCTG+AGG + chr7_3:31998622-31998641 None:intergenic 40.0%
CGCTTGAAGCTTCTCTTCAA+TGG - chr7_3:31992247-31992266 Msa1101300:three_prime_UTR 45.0%
AACACTTCCCTTTGCTTCTG+AGG + chr7_3:31992375-31992394 None:intergenic 45.0%
!! AGGGAAGTGTTGTAATGCTG+AGG - chr7_3:31992384-31992403 Msa1101300:CDS 45.0%
!! TTTGATGGTGATGGCTTGTC+TGG - chr7_3:31992493-31992512 Msa1101300:intron 45.0%
! TGATGGCTTGTCTGGTTTCA+GGG - chr7_3:31992501-31992520 Msa1101300:intron 45.0%
TGGTAATAACCCTTGCATGG+TGG - chr7_3:31993585-31993604 Msa1101300:intron 45.0%
!! CTCACTTTTCCACCATGCAA+GGG + chr7_3:31993597-31993616 None:intergenic 45.0%
! ACGAGGCCAGAGTTTTTCTA+TGG - chr7_3:31993678-31993697 Msa1101300:intron 45.0%
! GAGGTCTAAGGTTCAAACCT+AGG + chr7_3:31993750-31993769 None:intergenic 45.0%
GGTTTGAACCTTAGACCTCT+TGG - chr7_3:31993751-31993770 Msa1101300:intron 45.0%
TCTCCACACAGCTACCTTAA+TGG - chr7_3:31993892-31993911 Msa1101300:intron 45.0%
CTACCATTAAGGTAGCTGTG+TGG + chr7_3:31993898-31993917 None:intergenic 45.0%
AAAGAGGGCAAAGCACACAA+TGG - chr7_3:31993936-31993955 Msa1101300:intron 45.0%
TGAAAGCTGGGATCAAAGCA+AGG - chr7_3:31994431-31994450 Msa1101300:intron 45.0%
AACAAGTTCCGGTTCATGGA+TGG + chr7_3:31994472-31994491 None:intergenic 45.0%
!! CGGGATCTCTGTATTTTGAG+AGG - chr7_3:31994599-31994618 Msa1101300:intron 45.0%
TGAGAGGGATCAAACAAAGC+TGG - chr7_3:31994615-31994634 Msa1101300:intron 45.0%
TGTTTACAAGTGGCACGATG+TGG - chr7_3:31994879-31994898 Msa1101300:intron 45.0%
GTTTACAAGTGGCACGATGT+GGG - chr7_3:31994880-31994899 Msa1101300:intron 45.0%
CAGGGCTATGTTTAGTTGAG+TGG + chr7_3:31995155-31995174 None:intergenic 45.0%
GTGCCTATGATTTCTGAGCA+AGG + chr7_3:31995386-31995405 None:intergenic 45.0%
GTTCACAACACACCCCTAAA+AGG - chr7_3:31995412-31995431 Msa1101300:intron 45.0%
ACACCCCTAAAAGGCAAAGT+AGG - chr7_3:31995421-31995440 Msa1101300:intron 45.0%
ATAGATACTGGGGAACATGG+GGG - chr7_3:31996175-31996194 Msa1101300:intron 45.0%
GTTGCTTAATATGTGCCCTC+AGG + chr7_3:31997681-31997700 None:intergenic 45.0%
GAAAGGACGAAAGTCCTTAG+AGG - chr7_3:31997935-31997954 Msa1101300:intron 45.0%
TAACATTGGCAACCCTTCCT+TGG + chr7_3:31998072-31998091 None:intergenic 45.0%
GCGAGAATGTCATAGTCCTT+TGG + chr7_3:31998219-31998238 None:intergenic 45.0%
! AAGAGTTCTGACCGCGAAAA+AGG - chr7_3:31998263-31998282 Msa1101300:CDS 45.0%
! AGAGTTCTGACCGCGAAAAA+GGG - chr7_3:31998264-31998283 Msa1101300:CDS 45.0%
! AAAAGGGCACACCTGATGAA+TGG - chr7_3:31998280-31998299 Msa1101300:CDS 45.0%
AGATACTGACGCCATTCATC+AGG + chr7_3:31998294-31998313 None:intergenic 45.0%
!! GACTAACCCATGGTTCTAAG+AGG + chr7_3:31998322-31998341 None:intergenic 45.0%
!! CTTAGAACCATGGGTTAGTC+TGG - chr7_3:31998322-31998341 Msa1101300:CDS 45.0%
AAAGAGAATCGTAGCGTGTC+TGG + chr7_3:31998376-31998395 None:intergenic 45.0%
GTGAACTGTGCCATACCCTT+TGG + chr7_3:31992217-31992236 None:intergenic 50.0%
ATGGCACAGTTCACTGCACA+AGG - chr7_3:31992223-31992242 Msa1101300:three_prime_UTR 50.0%
! GTGATGGCTTGTCTGGTTTC+AGG - chr7_3:31992500-31992519 Msa1101300:intron 50.0%
! GATGGCTTGTCTGGTTTCAG+GGG - chr7_3:31992502-31992521 Msa1101300:intron 50.0%
! TGGTTTCAGGGGTCTTGTGT+TGG - chr7_3:31992513-31992532 Msa1101300:intron 50.0%
GACTGCTATCATCATGCTCC+AGG - chr7_3:31992790-31992809 Msa1101300:intron 50.0%
! GCATACAACATTGACTGGCC+TGG + chr7_3:31992811-31992830 None:intergenic 50.0%
GGCCAGTCAATGTTGTATGC+TGG - chr7_3:31992811-31992830 Msa1101300:intron 50.0%
GGACATACCCTTAAGACAGC+TGG + chr7_3:31993277-31993296 None:intergenic 50.0%
!! CCTCACTTTTCCACCATGCA+AGG + chr7_3:31993598-31993617 None:intergenic 50.0%
! CCTTGCATGGTGGAAAAGTG+AGG - chr7_3:31993595-31993614 Msa1101300:intron 50.0%
! CATGGGTGGTAGTGCTCAAA+GGG + chr7_3:31994051-31994070 None:intergenic 50.0%
! ACATGGGTGGTAGTGCTCAA+AGG + chr7_3:31994052-31994071 None:intergenic 50.0%
TGGAGAACGCTGTCGAAGTT+TGG + chr7_3:31994328-31994347 None:intergenic 50.0%
AAGCTGGGATCAAAGCAAGG+TGG - chr7_3:31994434-31994453 Msa1101300:intron 50.0%
ACAACCACTAGACTCTCTCC+AGG - chr7_3:31994564-31994583 Msa1101300:intron 50.0%
TCATCCTGGAGAGAGTCTAG+TGG + chr7_3:31994571-31994590 None:intergenic 50.0%
AGTGGGTGGACAATGGACAT+GGG - chr7_3:31995831-31995850 Msa1101300:intron 50.0%
TAGATACTGGGGAACATGGG+GGG - chr7_3:31996176-31996195 Msa1101300:intron 50.0%
TGAGCTGTTGTGTGGCCTAT+TGG - chr7_3:31996358-31996377 Msa1101300:intron 50.0%
GAGCTGTTGTGTGGCCTATT+GGG - chr7_3:31996359-31996378 Msa1101300:intron 50.0%
CGCAATCAAAGCCACAAGCA+TGG - chr7_3:31996522-31996541 Msa1101300:intron 50.0%
! TCATGCTAACTTGTGCCCTG+AGG - chr7_3:31997662-31997681 Msa1101300:intron 50.0%
! CATGCTAACTTGTGCCCTGA+GGG - chr7_3:31997663-31997682 Msa1101300:intron 50.0%
AGCTGCTGCTGTTAGAGGTA+TGG + chr7_3:31998241-31998260 None:intergenic 50.0%
CTTAGAGCTGCTGCTGTTAG+AGG + chr7_3:31998246-31998265 None:intergenic 50.0%
!! ATCAGGTGTGCCCTTTTTCG+CGG + chr7_3:31998277-31998296 None:intergenic 50.0%
!! AGAACCATGGGTTAGTCTGG+TGG - chr7_3:31998325-31998344 Msa1101300:CDS 50.0%
GATGGCTCAGACCTTCTCAT+TGG - chr7_3:31998548-31998567 Msa1101300:five_prime_UTR 50.0%
AAGACTGTGAACTCCCCCAG+TGG - chr7_3:31993238-31993257 Msa1101300:intron 55.0%
GACTTCCCTGCAGTACTGTC+AGG + chr7_3:31993504-31993523 None:intergenic 55.0%
GTAGAAGGGGTAGCTTCACG+AGG - chr7_3:31993661-31993680 Msa1101300:intron 55.0%
AGCTGGCACAACGTGATCGA+TGG + chr7_3:31995809-31995828 None:intergenic 55.0%
CAGTGGGTGGACAATGGACA+TGG - chr7_3:31995830-31995849 Msa1101300:intron 55.0%
!! TTGGTGTCGTGCCATGCTTG+TGG + chr7_3:31996536-31996555 None:intergenic 55.0%
GCAACCACCAGACTAACCCA+TGG + chr7_3:31998332-31998351 None:intergenic 55.0%
CGCACTGAGCATAGAGGCCT+GGG + chr7_3:31993078-31993097 None:intergenic 60.0%
TGCACGCGCACTGAGCATAG+AGG + chr7_3:31993084-31993103 None:intergenic 60.0%
TCACGTTGTGCCAGCTGCAG+TGG - chr7_3:31995813-31995832 Msa1101300:intron 60.0%
CACGTTGTGCCAGCTGCAGT+GGG - chr7_3:31995814-31995833 Msa1101300:intron 60.0%
CATTGTCCACCCACTGCAGC+TGG + chr7_3:31995826-31995845 None:intergenic 60.0%
CAGCTGCAGTGGGTGGACAA+TGG - chr7_3:31995824-31995843 Msa1101300:intron 60.0%
GCGTGTCTGGCATCACACAC+AGG + chr7_3:31998363-31998382 None:intergenic 60.0%
GCTGAGGCACGTCCCAGTGA+AGG - chr7_3:31992400-31992419 Msa1101300:CDS 65.0%
GCGCACTGAGCATAGAGGCC+TGG + chr7_3:31993079-31993098 None:intergenic 65.0%
GTTGTGCCAGCTGCAGTGGG+TGG - chr7_3:31995817-31995836 Msa1101300:intron 65.0%
CTGGGGAACATGGGGGGAGA+AGG - chr7_3:31996182-31996201 Msa1101300:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 31992020 31998642 31992020 ID=Msa1101300;Name=Msa1101300
chr7_3 mRNA 31992020 31998642 31992020 ID=Msa1101300-mRNA-1;Parent=Msa1101300;Name=Msa1101300-mRNA-1;_AED=0.17;_eAED=0.17;_QI=203|0.62|0.77|0.77|1|1|9|316|336
chr7_3 exon 31992020 31992449 31992020 ID=Msa1101300-mRNA-1:exon:6902;Parent=Msa1101300-mRNA-1
chr7_3 exon 31992673 31992756 31992673 ID=Msa1101300-mRNA-1:exon:6901;Parent=Msa1101300-mRNA-1
chr7_3 exon 31994801 31994882 31994801 ID=Msa1101300-mRNA-1:exon:6900;Parent=Msa1101300-mRNA-1
chr7_3 exon 31995568 31995662 31995568 ID=Msa1101300-mRNA-1:exon:6899;Parent=Msa1101300-mRNA-1
chr7_3 exon 31995858 31995954 31995858 ID=Msa1101300-mRNA-1:exon:6898;Parent=Msa1101300-mRNA-1
chr7_3 exon 31997002 31997084 31997002 ID=Msa1101300-mRNA-1:exon:6897;Parent=Msa1101300-mRNA-1
chr7_3 exon 31997374 31997448 31997374 ID=Msa1101300-mRNA-1:exon:6896;Parent=Msa1101300-mRNA-1
chr7_3 exon 31997796 31997850 31997796 ID=Msa1101300-mRNA-1:exon:6895;Parent=Msa1101300-mRNA-1
chr7_3 exon 31998114 31998642 31998114 ID=Msa1101300-mRNA-1:exon:6894;Parent=Msa1101300-mRNA-1
chr7_3 five_prime_UTR 31998440 31998642 31998440 ID=Msa1101300-mRNA-1:five_prime_utr;Parent=Msa1101300-mRNA-1
chr7_3 CDS 31998114 31998439 31998114 ID=Msa1101300-mRNA-1:cds;Parent=Msa1101300-mRNA-1
chr7_3 CDS 31997796 31997850 31997796 ID=Msa1101300-mRNA-1:cds;Parent=Msa1101300-mRNA-1
chr7_3 CDS 31997374 31997448 31997374 ID=Msa1101300-mRNA-1:cds;Parent=Msa1101300-mRNA-1
chr7_3 CDS 31997002 31997084 31997002 ID=Msa1101300-mRNA-1:cds;Parent=Msa1101300-mRNA-1
chr7_3 CDS 31995858 31995954 31995858 ID=Msa1101300-mRNA-1:cds;Parent=Msa1101300-mRNA-1
chr7_3 CDS 31995568 31995662 31995568 ID=Msa1101300-mRNA-1:cds;Parent=Msa1101300-mRNA-1
chr7_3 CDS 31994801 31994882 31994801 ID=Msa1101300-mRNA-1:cds;Parent=Msa1101300-mRNA-1
chr7_3 CDS 31992673 31992756 31992673 ID=Msa1101300-mRNA-1:cds;Parent=Msa1101300-mRNA-1
chr7_3 CDS 31992336 31992449 31992336 ID=Msa1101300-mRNA-1:cds;Parent=Msa1101300-mRNA-1
chr7_3 three_prime_UTR 31992020 31992335 31992020 ID=Msa1101300-mRNA-1:three_prime_utr;Parent=Msa1101300-mRNA-1
Gene Sequence

>Msa1101300

ATGGCACAGTTCACTGCACAAGGTCGCTTGAAGCTTCTCTTCAATGGAGAAACTGTGTCATCTCTCATGGTTCAGACCCACAAGAGAAGAACAAGTTACAAAGGTTCTTCTTCTTTTGCTTCTAGATTTCACCATGCATCTTCTTCATACCTCAGAAGCAAAGGGAAGTGTTGTAATGCTGAGGCACGTCCCAGTGAAGGTGTTCATGATGAATATGCATATGTTTTTGAATATGATTCTGTTGATGAGGATGATGATGATGATGATGTATTTGATGGTGATGGCTTGTCTGGTTTCAGGGGTCTTGTGTTGGATATATCTTACAGGCCAGTCAATGTTGTATGCTGGAAACGTGCCATTTGTTTAGAGTTTATGGAGAAGGCTGATGTACTAGAGTATTATGATAAGACTGTGAACTCCCCCAGTGGATCTTTCTATATACCAGCTGTCTTAAGGAACTATCTGGTAATAACCCTTGCATGGTGGAAAAGTGAGGTAGAAGAGTTTAGTAAACATGTATACTATTTTATTGGTGGAAGCAGAGATCAAGAGAGCTCTAATACCATCTTAGTTAGCAAAGCAGAAGAAGATATCAGTGAAAAGAGGATTGACCTTCTCATTCTTACTGGAACAGTGGTTCGTCATTTACTTCAGATTATTAAAAGAAGAAGAGTAGTCAAGAACAGTCTTAGTCGGAAAAATATACTGTTTAGAGACAATTACACCTGTCAGTATTGCTCTTCACATGAGAATTTGACCATCGATCACGTTGTGCCAGCTGCAGTGGGTGGACAATGGACATGGGAAAATCTAGTGACTGCTTGTTCCAGATGCAACTCAAAGAAAGGACGAAAGTCCTTAGAGGAAGCAAAAATGAAGTTGATTAAGGTCCCAAAGAAACCAAAGGACTATGACATTCTCGCCATACCTCTAACAGCAGCAGCTCTAAGAGTTCTGACCGCGAAAAAGGGCACACCTGATGAATGGCGTCAGTATCTAAGTTCCTCTTAG

Protein sequence

>Msa1101300

MAQFTAQGRLKLLFNGETVSSLMVQTHKRRTSYKGSSSFASRFHHASSSYLRSKGKCCNAEARPSEGVHDEYAYVFEYDSVDEDDDDDDVFDGDGLSGFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDKTVNSPSGSFYIPAVLRNYLVITLAWWKSEVEEFSKHVYYFIGGSRDQESSNTILVSKAEEDISEKRIDLLILTGTVVRHLLQIIKRRRVVKNSLSRKNILFRDNYTCQYCSSHENLTIDHVVPAAVGGQWTWENLVTACSRCNSKKGRKSLEEAKMKLIKVPKKPKDYDILAIPLTAAALRVLTAKKGTPDEWRQYLSSS*