AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1346340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346340 MtrunA17_Chr2g0307851 94.925 670 30 1 1 666 1 670 0.0 1226
Msa1346340 MtrunA17_Chr4g0061881 78.814 590 124 1 77 665 68 657 0.0 968
Msa1346340 MtrunA17_Chr4g0061841 52.412 311 64 5 151 461 8 234 5.09e-95 293
Msa1346340 MtrunA17_Chr4g0073611 49.518 311 111 6 152 457 2 271 7.07e-90 281
Msa1346340 MtrunA17_Chr5g0408331 43.478 368 118 6 79 445 34 312 1.35e-86 274
Msa1346340 MtrunA17_Chr5g0437391 44.709 378 119 12 198 568 6 300 2.03e-80 258
Msa1346340 MtrunA17_Chr4g0076561 63.636 209 40 2 346 554 14 186 1.34e-79 251
Msa1346340 MtrunA17_Chr4g0069071 39.426 383 199 11 138 509 11 371 4.19e-67 224
Msa1346340 MtrunA17_Chr8g0344851 62.778 180 56 5 427 603 1 172 2.24e-58 194
Msa1346340 MtrunA17_Chr4g0061831 85.437 103 15 0 489 591 9 111 1.61e-53 179
Msa1346340 MtrunA17_Chr4g0064001 51.724 203 72 6 452 642 4 192 1.88e-48 169
Msa1346340 MtrunA17_Chr4g0076571 68.041 97 31 0 148 244 2 98 4.14e-43 150
Msa1346340 MtrunA17_Chr8g0344821 64.815 108 36 1 493 600 5 110 5.95e-36 131
Msa1346340 MtrunA17_Chr5g0437441 57.143 105 39 3 104 205 1 102 2.02e-29 112
Msa1346340 MtrunA17_Chr8g0344831 51.181 127 49 2 322 448 5 118 1.40e-26 105
Msa1346340 MtrunA17_Chr4g0073621 75.758 66 14 1 541 604 1 66 3.89e-26 102
Msa1346340 MtrunA17_Chr5g0408341 60.494 81 32 0 546 626 1 81 9.61e-25 100
Msa1346340 MtrunA17_Chr5g0437451 82.353 51 9 0 543 593 98 148 1.34e-21 92.0
Msa1346340 MtrunA17_Chr4g0069081 50.000 86 43 0 522 607 2 87 6.20e-21 88.6
Msa1346340 MtrunA17_Chr4g0063991 57.143 84 24 2 344 427 2 73 1.13e-19 84.0
Msa1346340 MtrunA17_Chr4g0063981 43.662 71 30 2 181 251 1 61 8.53e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346340 AT1G73990.1 70.533 638 175 4 38 666 43 676 0.0 905
Msa1346340 AT1G73990.2 71.456 515 134 4 38 543 43 553 0.0 748

Find 172 sgRNAs with CRISPR-Local

Find 687 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTATGATCCTCGAATTTC+TGG 0.156422 tig0008587:-61782 Msa1346340:CDS
AAATGGACACTTGGAATTTC+AGG 0.199983 tig0008587:-57696 Msa1346340:CDS
GTCTTCTTCTTGAATGAGTT+TGG 0.227850 tig0008587:+63200 Msa1346340:intergenic
ATAGTATATCCATTATTAAA+TGG 0.254662 tig0008587:+52535 Msa1346340:intergenic
TCTTCTTCTTGAATGAGTTT+GGG 0.270184 tig0008587:+63201 Msa1346340:intergenic
CATACATTAAATTTGATATA+AGG 0.278743 tig0008587:+59041 Msa1346340:intergenic
TTTGAATTCGAACCTATTAC+TGG 0.295958 tig0008587:-63067 Msa1346340:CDS
GCAGAAAGTCTTACGTTAAC+TGG 0.296101 tig0008587:-56131 Msa1346340:CDS
CTTACTCGCCCATTTAATAA+TGG 0.310770 tig0008587:-52544 Msa1346340:three_prime_UTR
ATATGCATTCTGTGCAGATT+TGG 0.331313 tig0008587:+53412 Msa1346340:intergenic
AACTGCCAACGGTCGATTAC+GGG 0.340728 tig0008587:-58634 Msa1346340:intron
CATGGTTTGGTTGATGCTAT+TGG 0.357229 tig0008587:-53191 Msa1346340:CDS
GGTGTTGCGGCGGTAGAGGG+GGG 0.359266 tig0008587:+63297 Msa1346340:intergenic
GCAAATAGCTCTGCTTCATC+TGG 0.360163 tig0008587:+53434 Msa1346340:intergenic
AGGTGTTGCGGCGGTAGAGG+GGG 0.360641 tig0008587:+63296 Msa1346340:intergenic
AAACTGCCAACGGTCGATTA+CGG 0.362185 tig0008587:-58635 Msa1346340:CDS
GACAAAATGGGGTTGTCGTT+GGG 0.368893 tig0008587:+52838 Msa1346340:intergenic
ACGTGCTTTCAACTCCGGTT+AGG 0.374016 tig0008587:+52947 Msa1346340:intergenic
CACAGTTTAAACTATCAATA+TGG 0.374090 tig0008587:+61750 Msa1346340:intergenic
AAATTCCTCCAACCAGTAAT+AGG 0.377007 tig0008587:+63055 Msa1346340:intergenic
AAGGTGTTGCGGCGGTAGAG+GGG 0.381937 tig0008587:+63295 Msa1346340:intergenic
AAAACCAGTCATTGCTTCAA+TGG 0.389485 tig0008587:-56210 Msa1346340:CDS
CTTACGTTAACTGGTTCAAT+TGG 0.395398 tig0008587:-56122 Msa1346340:CDS
AGGTAGCACAGGGTAGAGTT+TGG 0.398928 tig0008587:-53235 Msa1346340:CDS
ATTGAATGAAATAAAATTAA+CGG 0.399687 tig0008587:+63365 Msa1346340:intergenic
AATGAATTATTAAAATCTAC+AGG 0.400136 tig0008587:+52791 Msa1346340:intergenic
ATAGCCATCATCCGGGCCTC+AGG 0.402955 tig0008587:-57660 Msa1346340:CDS
AGGGAGCATTAGTCGAGTTA+AGG 0.410229 tig0008587:-57640 Msa1346340:CDS
CTGTTCGTCCTGAGGTATAT+TGG 0.410992 tig0008587:+53130 Msa1346340:intergenic
TAAAATGACGCTTCGTGGCC+AGG 0.411967 tig0008587:-62969 Msa1346340:intron
TTGGAGGAATTTCGTCGTTA+AGG 0.417101 tig0008587:-63044 Msa1346340:CDS
ATTGAGAACTTTATAAATGA+AGG 0.419440 tig0008587:-59097 Msa1346340:CDS
AGATGCAGCATCACATGGTT+TGG 0.425370 tig0008587:-53204 Msa1346340:CDS
CGTGCTTTCAACTCCGGTTA+GGG 0.429338 tig0008587:+52948 Msa1346340:intergenic
AATACTCCCGGGTTAGGAAA+TGG 0.431438 tig0008587:-57713 Msa1346340:CDS
CACGTTGAAGGAACTGCTAC+AGG 0.432578 tig0008587:-52929 Msa1346340:CDS
CCTATGATCCTCGAATTTCT+GGG 0.434964 tig0008587:-61781 Msa1346340:CDS
TAGTATATCCATTATTAAAT+GGG 0.436210 tig0008587:+52536 Msa1346340:intergenic
TGTCTCATCTGGACTTCTGT+AGG 0.442944 tig0008587:-52588 Msa1346340:three_prime_UTR
AGGTAGAGAGGGACTAGATC+TGG 0.444443 tig0008587:+52996 Msa1346340:intergenic
GTCTCATCTGGACTTCTGTA+GGG 0.448382 tig0008587:-52587 Msa1346340:three_prime_UTR
ACAGGAAATACTCCCGGGTT+AGG 0.449319 tig0008587:-57719 Msa1346340:intron
ATAAGGTGTTGCGGCGGTAG+AGG 0.455950 tig0008587:+63293 Msa1346340:intergenic
TTCGAATTCAAATTCTCCAC+TGG 0.457392 tig0008587:+63078 Msa1346340:intergenic
AATGGATATACTATTTCTCT+TGG 0.458430 tig0008587:-52526 Msa1346340:three_prime_UTR
CAATATACCTCAGGACGAAC+AGG 0.460640 tig0008587:-53129 Msa1346340:intron
AAGAACTGATAGCCATCATC+CGG 0.468277 tig0008587:-57668 Msa1346340:CDS
TATGCCTGGATTGTCTCATC+TGG 0.468428 tig0008587:-52599 Msa1346340:three_prime_UTR
CCCAGAAATTCGAGGATCAT+AGG 0.470601 tig0008587:+61781 Msa1346340:intergenic
TAGATAATATCTATACAAAC+TGG 0.471417 tig0008587:-59237 Msa1346340:CDS
GGGAGCATTAGTCGAGTTAA+GGG 0.472364 tig0008587:-57639 Msa1346340:CDS
TTAGGATGTGGAGAGAAATT+CGG 0.477457 tig0008587:-56247 Msa1346340:intron
GAGGCAAGAGCGTCACCTCC+AGG 0.482340 tig0008587:+56928 Msa1346340:intergenic
CAGTTAAGTGTCTCTAGCTC+AGG 0.482587 tig0008587:-57615 Msa1346340:CDS
TGACAAAATGGGGTTGTCGT+TGG 0.483685 tig0008587:+52837 Msa1346340:intergenic
AGATGCTCATTGCGTATCCA+TGG 0.485437 tig0008587:-63018 Msa1346340:CDS
GTGTTGCGGCGGTAGAGGGG+GGG 0.488093 tig0008587:+63298 Msa1346340:intergenic
CAAGTGTCCATTTCCTAACC+CGG 0.488540 tig0008587:+57706 Msa1346340:intergenic
GGCGCACGGAGTTCCCTAAC+CGG 0.489745 tig0008587:-52961 Msa1346340:CDS
GTTCTTAAAATGACGCTTCG+TGG 0.490439 tig0008587:-62974 Msa1346340:CDS
GCAGGTTACTGACATGTTGA+AGG 0.493166 tig0008587:-58684 Msa1346340:intron
TAAGGTGTTGCGGCGGTAGA+GGG 0.494514 tig0008587:+63294 Msa1346340:intergenic
GACTAATGCTCCCTGAGGCC+CGG 0.494942 tig0008587:+57649 Msa1346340:intergenic
TTAATAAAGAAATCATATCA+AGG 0.499995 tig0008587:-54650 Msa1346340:CDS
CTTCAACGTGCTTTCAACTC+CGG 0.501193 tig0008587:+52942 Msa1346340:intergenic
AGTTTGGGGAAGAGAGTGAA+AGG 0.501583 tig0008587:+63216 Msa1346340:intergenic
CAAGATGGAGGAGGTAGCAC+AGG 0.504381 tig0008587:-53246 Msa1346340:CDS
GCTCCCTGAGGCCCGGATGA+TGG 0.505280 tig0008587:+57656 Msa1346340:intergenic
GCGAAACTGTATGAGAAGAT+TGG 0.507637 tig0008587:-54675 Msa1346340:CDS
TTGCCAATCCTTTCCACTTG+CGG 0.509346 tig0008587:+59334 Msa1346340:intergenic
CGTGCGCCTAATAAAATCTC+AGG 0.511141 tig0008587:+52976 Msa1346340:intergenic
TTTCTGATGGAGTTCAAGCT+AGG 0.514681 tig0008587:-52897 Msa1346340:CDS
AGTGAAGAGTAGATTCTCTC+CGG 0.517158 tig0008587:-61846 Msa1346340:CDS
AGAACGTACAGTCATAGATC+TGG 0.517426 tig0008587:+53361 Msa1346340:intergenic
TGATAGTTTAAACTGTGGGT+GGG 0.519618 tig0008587:-61744 Msa1346340:CDS
GATAGTTTAAACTGTGGGTG+GGG 0.519973 tig0008587:-61743 Msa1346340:CDS
GGAGGATACTACATGGCAAT+GGG 0.520535 tig0008587:-56170 Msa1346340:CDS
TGATGGAGTTCAAGCTAGGA+TGG 0.520543 tig0008587:-52893 Msa1346340:CDS
TATTGCCATAGCAAAATTGA+AGG 0.523316 tig0008587:-53153 Msa1346340:CDS
CTCAACCTAGGTGGACAAGA+TGG 0.525487 tig0008587:-53261 Msa1346340:intron
GGAAGAATCAAAAGCGCGAA+GGG 0.529032 tig0008587:+63171 Msa1346340:intergenic
ATAGTAAGAATACATATGCC+TGG 0.529719 tig0008587:-52613 Msa1346340:three_prime_UTR
ATTATCAGAATTGACAGTCC+TGG 0.529856 tig0008587:-56946 Msa1346340:CDS
TCGAACCTATTACTGGTTGG+AGG 0.530867 tig0008587:-63060 Msa1346340:CDS
GGTTTGGTTGATGCTATTGG+TGG 0.533991 tig0008587:-53188 Msa1346340:CDS
TTGATAGTTTAAACTGTGGG+TGG 0.533991 tig0008587:-61745 Msa1346340:CDS
TAATATCTATACAAACTGGC+TGG 0.538238 tig0008587:-59233 Msa1346340:CDS
CGGAGTTGAAAGCACGTTGA+AGG 0.539872 tig0008587:-52941 Msa1346340:CDS
ATTGGCAAGTACAAAAGTGC+AGG 0.541412 tig0008587:-59319 Msa1346340:CDS
GGTTCAATTGGAGTGGTCAC+AGG 0.541619 tig0008587:-56110 Msa1346340:intron
CGGGTTAGGAAATGGACACT+TGG 0.542638 tig0008587:-57705 Msa1346340:CDS
AAAGAAAAGTAAGCACTTGG+AGG 0.543239 tig0008587:+60840 Msa1346340:intergenic
AATTCGAACCTATTACTGGT+TGG 0.546364 tig0008587:-63063 Msa1346340:CDS
GAACCGCAAGTGGAAAGGAT+TGG 0.547009 tig0008587:-59337 Msa1346340:CDS
TCTTCTCATACAGTTTCGCT+AGG 0.547877 tig0008587:+54679 Msa1346340:intergenic
AACAAAGAAAAGTAAGCACT+TGG 0.548235 tig0008587:+60837 Msa1346340:intergenic
CTTCTTCTTGAATGAGTTTG+GGG 0.549616 tig0008587:+63202 Msa1346340:intergenic
GGAGTTCAAGCTAGGATGGA+TGG 0.550073 tig0008587:-52889 Msa1346340:CDS
TTCTACCCGTAATCGACCGT+TGG 0.552327 tig0008587:+58629 Msa1346340:intergenic
CCTTTACGAACACGTTCCCA+TGG 0.553283 tig0008587:+63001 Msa1346340:intergenic
ATTGAAGGCCAATATACCTC+AGG 0.554095 tig0008587:-53138 Msa1346340:CDS
CCATGGGAACGTGTTCGTAA+AGG 0.554425 tig0008587:-63001 Msa1346340:CDS
TTGAACACAGGAAATACTCC+CGG 0.555818 tig0008587:-57725 Msa1346340:intron
ATATTGATAGTTTAAACTGT+GGG 0.562161 tig0008587:-61748 Msa1346340:CDS
AATAAAATCTCAGGTAGAGA+GGG 0.563178 tig0008587:+52985 Msa1346340:intergenic
TCAGCCATTGAAGCAATGAC+TGG 0.563949 tig0008587:+56206 Msa1346340:intergenic
TAATAAAGAAATCATATCAA+GGG 0.565337 tig0008587:-54649 Msa1346340:CDS
AAATTTAATGTATGATGATG+AGG 0.565513 tig0008587:-59032 Msa1346340:intron
TGGAGGATACTACATGGCAA+TGG 0.566417 tig0008587:-56171 Msa1346340:CDS
TACCAGAACTTACAAATCAG+AGG 0.568309 tig0008587:+56909 Msa1346340:intergenic
AATAGGAGTTGAACCGCAAG+TGG 0.570611 tig0008587:-59347 Msa1346340:CDS
CAGCTTACCTCTGAGGAATG+AGG 0.572547 tig0008587:+60797 Msa1346340:intergenic
CATTGCTTCAATGGCTGATG+TGG 0.572578 tig0008587:-56201 Msa1346340:CDS
AAGAAAAGTAAGCACTTGGA+GGG 0.573901 tig0008587:+60841 Msa1346340:intergenic
TCGAATTCAAATTCTCCACT+GGG 0.574482 tig0008587:+63079 Msa1346340:intergenic
TGAACACAGGAAATACTCCC+GGG 0.579067 tig0008587:-57724 Msa1346340:intron
GAGTTGAACCGCAAGTGGAA+AGG 0.579458 tig0008587:-59342 Msa1346340:CDS
TAGCCATCATCCGGGCCTCA+GGG 0.580655 tig0008587:-57659 Msa1346340:CDS
GTTAACTGGTTCAATTGGAG+TGG 0.581126 tig0008587:-56117 Msa1346340:CDS
AAGTCCAGATGAGACAATCC+AGG 0.583833 tig0008587:+52595 Msa1346340:intergenic
AAGTGTCCATTTCCTAACCC+GGG 0.584075 tig0008587:+57707 Msa1346340:intergenic
CGTTGAAGGAACTGCTACAG+GGG 0.585808 tig0008587:-52927 Msa1346340:CDS
CTATGGCAATAGCTCGGGAA+AGG 0.585943 tig0008587:+53165 Msa1346340:intergenic
TAATAAAATCTCAGGTAGAG+AGG 0.589084 tig0008587:+52984 Msa1346340:intergenic
GAGAAGATTCGCACTGTCAG+AGG 0.592913 tig0008587:-57570 Msa1346340:intron
GATGCTCATTGCGTATCCAT+GGG 0.597452 tig0008587:-63017 Msa1346340:CDS
GTTGATAAGCTGAAAGAAGA+GGG 0.598500 tig0008587:-59064 Msa1346340:CDS
AGATAGACCCCAGAAATTCG+AGG 0.602106 tig0008587:+61773 Msa1346340:intergenic
ATGGCTGATGTGGCAGCAAG+TGG 0.602616 tig0008587:-56191 Msa1346340:CDS
GTGAAGAGTAGATTCTCTCC+GGG 0.602919 tig0008587:-61845 Msa1346340:CDS
CATATTGATAGTTTAAACTG+TGG 0.604388 tig0008587:-61749 Msa1346340:CDS
ATGTACGTACAGTGATTGCG+AGG 0.604584 tig0008587:+52677 Msa1346340:intergenic
GATAAAGTCTCTTCTGCCAA+AGG 0.606342 tig0008587:-59211 Msa1346340:intron
GAAAGACCAGCTTACCTCTG+AGG 0.608420 tig0008587:+60790 Msa1346340:intergenic
GACATGTTGAAGGAGAGACT+TGG 0.612900 tig0008587:-58674 Msa1346340:CDS
TCTCATCTGGACTTCTGTAG+GGG 0.617749 tig0008587:-52586 Msa1346340:three_prime_UTR
ACGTTGAAGGAACTGCTACA+GGG 0.618985 tig0008587:-52928 Msa1346340:CDS
AGTTGATAAGCTGAAAGAAG+AGG 0.622772 tig0008587:-59065 Msa1346340:CDS
AATAAAGAAATCATATCAAG+GGG 0.623523 tig0008587:-54648 Msa1346340:CDS
TAACTAACCTGTTCGTCCTG+AGG 0.625627 tig0008587:+53122 Msa1346340:intergenic
GGTAAAGATGCAGCATCACA+TGG 0.630228 tig0008587:-53209 Msa1346340:CDS
TGGACACTTGGAATTTCAGG+TGG 0.630389 tig0008587:-57693 Msa1346340:CDS
AGGAAGAATCAAAAGCGCGA+AGG 0.632352 tig0008587:+63170 Msa1346340:intergenic
GCTTGTAGGAAAATTTGTCG+TGG 0.632736 tig0008587:-60928 Msa1346340:intron
AGAACTGATAGCCATCATCC+GGG 0.633122 tig0008587:-57667 Msa1346340:CDS
AGTGAAGTGATGAGCTGACA+AGG 0.634549 tig0008587:+63440 Msa1346340:intergenic
TAGCTCAGGCATCACTGCGG+AGG 0.634924 tig0008587:-57601 Msa1346340:CDS
AGAAAAGTAAGCACTTGGAG+GGG 0.636043 tig0008587:+60842 Msa1346340:intergenic
GTAAAGTAGAAGAAATTCGA+AGG 0.637376 tig0008587:-61721 Msa1346340:CDS
AGCAAGTGGAGGATACTACA+TGG 0.638303 tig0008587:-56177 Msa1346340:CDS
CTAGGTGGACAAGATGGAGG+AGG 0.639098 tig0008587:-53255 Msa1346340:intron
GCACAGGGTAGAGTTTGGAC+TGG 0.644303 tig0008587:-53230 Msa1346340:CDS
GCTATGCCAGGTAACTGTTG+TGG 0.645235 tig0008587:-53025 Msa1346340:intron
AACCTAGGTGGACAAGATGG+AGG 0.648031 tig0008587:-53258 Msa1346340:intron
CTATGATCCTCGAATTTCTG+GGG 0.650704 tig0008587:-61780 Msa1346340:CDS
ATTTGAGGTAGAGAAAGTCC+CGG 0.652101 tig0008587:+61827 Msa1346340:intergenic
ATGAATTATTAAAATCTACA+GGG 0.660702 tig0008587:+52792 Msa1346340:intergenic
TTAAAATCTACAGGGAACTG+AGG 0.661779 tig0008587:+52800 Msa1346340:intergenic
GCTGATGTGGCAGCAAGTGG+AGG 0.665663 tig0008587:-56188 Msa1346340:CDS
ATCAGAATTGACAGTCCTGG+AGG 0.668918 tig0008587:-56943 Msa1346340:CDS
TCTCTTCACATGCAGACGCG+AGG 0.669498 tig0008587:+60871 Msa1346340:intergenic
TGTACGTACAGTGATTGCGA+GGG 0.672180 tig0008587:+52678 Msa1346340:intergenic
ATATAAACAATTTCGAGACA+AGG 0.676264 tig0008587:-53393 Msa1346340:CDS
AAGATGGAGGAGGTAGCACA+GGG 0.676774 tig0008587:-53245 Msa1346340:CDS
GGCTGACATAAACGAAGACG+TGG 0.691460 tig0008587:-63474 None:intergenic
ATGATGATGATAAGGTGTTG+CGG 0.697257 tig0008587:+63284 Msa1346340:intergenic
GTACGTACAGTGATTGCGAG+GGG 0.704083 tig0008587:+52679 Msa1346340:intergenic
GCTGATGAAGATTATCCCAG+TGG 0.718921 tig0008587:-63094 Msa1346340:CDS
GTTCAAGCCTCATTCCTCAG+AGG 0.722696 tig0008587:-60804 Msa1346340:intron
AACTCGACTAATGCTCCCTG+AGG 0.724123 tig0008587:+57644 Msa1346340:intergenic
CTCTAGCTCAGGCATCACTG+CGG 0.730860 tig0008587:-57604 Msa1346340:CDS
ATGATGATAAGGTGTTGCGG+CGG 0.786339 tig0008587:+63287 Msa1346330:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAATGAAATAAAATTAA+CGG + tig0008587:52597-52616 None:intergenic 10.0%
!!! CTTTATTTTATTTTGTTTAA+TGG + tig0008587:53458-53477 Msa1346340:intergenic 10.0%
!!! TTTAAATTTTAGAGAAAATA+TGG - tig0008587:54960-54979 Msa1346340:intron 10.0%
!! TTGACAAAAATAAAATAAAA+TGG - tig0008587:55689-55708 Msa1346340:intron 10.0%
!! TTAAACACTAAATATATAAA+AGG - tig0008587:55730-55749 Msa1346340:intron 10.0%
!! TAAACACTAAATATATAAAA+GGG - tig0008587:55731-55750 Msa1346340:intron 10.0%
!! ATAAATATTATATGTATAGT+TGG - tig0008587:55862-55881 Msa1346340:intron 10.0%
!!! TTTAATAATTTGATTTGTAT+TGG - tig0008587:59112-59131 Msa1346340:CDS 10.0%
!! TATATTAATAATAATAGGTA+TGG + tig0008587:61505-61524 Msa1346340:intergenic 10.0%
!! TAATGTAATGTAAAAAAGTT+TGG - tig0008587:53112-53131 Msa1346340:intron 15.0%
!! AATGTAATGTAAAAAAGTTT+GGG - tig0008587:53113-53132 Msa1346340:intron 15.0%
!! AACATACTATATGTATATTT+GGG + tig0008587:54030-54049 Msa1346340:intergenic 15.0%
!! CATCATATAATATGAAAAAA+AGG + tig0008587:54336-54355 Msa1346340:intergenic 15.0%
!!! AAATTACCTTTTTCTTTTTT+TGG - tig0008587:55225-55244 Msa1346340:intron 15.0%
!!! ATTTGTTTAGTTTTTACTTT+GGG + tig0008587:55442-55461 Msa1346340:intergenic 15.0%
!!! AATTTGTTTAGTTTTTACTT+TGG + tig0008587:55443-55462 Msa1346340:intergenic 15.0%
!!! AAATTTTCCCATTATATTTT+AGG - tig0008587:55548-55567 Msa1346340:intron 15.0%
!!! AGTATTCCATAATTTTTATT+TGG + tig0008587:55655-55674 Msa1346340:intergenic 15.0%
!! AAACACTAAATATATAAAAG+GGG - tig0008587:55732-55751 Msa1346340:intron 15.0%
!!! AATTTGAAACAACAATTAAA+AGG - tig0008587:55760-55779 Msa1346340:intron 15.0%
!!! TTGTTTTAAAGAGAAATTAT+TGG + tig0008587:56151-56170 Msa1346340:intergenic 15.0%
!! TAAAATATTGTAGATGTATA+TGG - tig0008587:56376-56395 Msa1346340:intron 15.0%
!! CATACATTAAATTTGATATA+AGG + tig0008587:56921-56940 Msa1346340:intergenic 15.0%
!! GAATATATATTAATAAAAGC+TGG + tig0008587:57005-57024 Msa1346340:intergenic 15.0%
!! AAGATAAAATTGAAACTTTA+CGG + tig0008587:57451-57470 Msa1346340:intergenic 15.0%
!!! AATTTTACAATTAGTGTATA+CGG - tig0008587:57986-58005 Msa1346340:intron 15.0%
!!! ATCATCTTGATATTTTATTT+TGG + tig0008587:58202-58221 Msa1346340:intergenic 15.0%
!! AATATTATATTGGTATTTAC+CGG - tig0008587:58488-58507 Msa1346340:intron 15.0%
!!! ATATGTTTATTTATTTTCTC+TGG + tig0008587:58720-58739 Msa1346340:intergenic 15.0%
!! ATTATAATAATTAGAAGTTG+TGG + tig0008587:58911-58930 Msa1346340:intergenic 15.0%
!!! TTTTGAAAATAAAACTAACA+TGG + tig0008587:59086-59105 Msa1346340:intergenic 15.0%
!!! CAAAAAAATTTGTCAAATTT+TGG - tig0008587:59343-59362 Msa1346340:CDS 15.0%
!!! AATCTAACTAAAAAAAGTAT+AGG - tig0008587:59930-59949 Msa1346340:intron 15.0%
!! TTAATAAAGAAATCATATCA+AGG - tig0008587:61309-61328 Msa1346340:intron 15.0%
!! TAATAAAGAAATCATATCAA+GGG - tig0008587:61310-61329 Msa1346340:intron 15.0%
!! ATTATGTAAAACTTAATTCA+TGG + tig0008587:61874-61893 Msa1346340:intergenic 15.0%
!!! AATCTTCATAATCAATTTTT+TGG - tig0008587:61921-61940 Msa1346340:intron 15.0%
!! TTAATAATGGTATGAATTAT+TGG - tig0008587:62251-62270 Msa1346340:intron 15.0%
!! TAATAATGGTATGAATTATT+GGG - tig0008587:62252-62271 Msa1346340:intron 15.0%
!!! TGTTTTTAATCTTTAATTGA+CGG - tig0008587:62467-62486 Msa1346340:intron 15.0%
!!! TCTTTTATAATTGACAAAAT+GGG + tig0008587:63136-63155 Msa1346340:intergenic 15.0%
!!! ATCTTTTATAATTGACAAAA+TGG + tig0008587:63137-63156 Msa1346340:intergenic 15.0%
!! ATGAATTATTAAAATCTACA+GGG + tig0008587:63170-63189 Msa1346340:intergenic 15.0%
!! AATGAATTATTAAAATCTAC+AGG + tig0008587:63171-63190 Msa1346340:intergenic 15.0%
!! TAGTATATCCATTATTAAAT+GGG + tig0008587:63426-63445 Msa1346340:intergenic 15.0%
!! ATAGTATATCCATTATTAAA+TGG + tig0008587:63427-63446 Msa1346340:intergenic 15.0%
!!! AAGAAATAGTTTGAGTTTAA+CGG + tig0008587:53279-53298 Msa1346340:intergenic 20.0%
!! TTATGAAAATAAGCTGAATA+TGG - tig0008587:53535-53554 Msa1346340:intron 20.0%
!!! GAATGTGATTAAATTGTTTT+AGG - tig0008587:53733-53752 Msa1346340:intron 20.0%
!! GAACATACTATATGTATATT+TGG + tig0008587:54031-54050 Msa1346340:intergenic 20.0%
!!! ATATTGATAGTTTAAACTGT+GGG - tig0008587:54211-54230 Msa1346340:intron 20.0%
!! ATCTTGAATTTCAAAAAATC+AGG - tig0008587:54264-54283 Msa1346340:intron 20.0%
!!! AACAGAAGATATATTGATTT+GGG + tig0008587:54678-54697 Msa1346340:intergenic 20.0%
!! AATATATCTTCTGTTGTTAT+AGG - tig0008587:54683-54702 Msa1346340:CDS 20.0%
!! ATATATCTTCTGTTGTTATA+GGG - tig0008587:54684-54703 Msa1346340:CDS 20.0%
!! TATTAAATTAATCACTCTCT+TGG + tig0008587:54815-54834 Msa1346340:intergenic 20.0%
!! AGATTATACAATAGTTCATT+TGG + tig0008587:55395-55414 Msa1346340:intergenic 20.0%
!! AATGAACTATTGTATAATCT+AGG - tig0008587:55395-55414 Msa1346340:intron 20.0%
!! GTAAAAACTAAACAAATTCA+TGG - tig0008587:55445-55464 Msa1346340:intron 20.0%
!! GAAATGTCCTAAAATATAAT+GGG + tig0008587:55558-55577 Msa1346340:intergenic 20.0%
!! AGAAATGTCCTAAAATATAA+TGG + tig0008587:55559-55578 Msa1346340:intergenic 20.0%
!! GTGTTTCCAAATAAAAATTA+TGG - tig0008587:55646-55665 Msa1346340:intron 20.0%
!! AACACTAAATATATAAAAGG+GGG - tig0008587:55733-55752 Msa1346340:intron 20.0%
!!! TTCATTTTGCTCTATTAATT+AGG + tig0008587:55810-55829 Msa1346340:intergenic 20.0%
!! TATTGAATTAGAAAAGCTTT+GGG + tig0008587:55914-55933 Msa1346340:intergenic 20.0%
!! AATTTATCCGAAAGAAAAAT+AGG + tig0008587:55966-55985 Msa1346340:intergenic 20.0%
!!! TAATATTTTTTCCATCAAAC+TGG - tig0008587:56110-56129 Msa1346340:intron 20.0%
!!! ACATCTACAATATTTTAGAA+AGG + tig0008587:56373-56392 Msa1346340:intergenic 20.0%
!! CAAATAATTCCTTTATTGTT+CGG - tig0008587:56433-56452 Msa1346340:intron 20.0%
!! AAAAGGTTTGATTAATAATC+TGG + tig0008587:56502-56521 Msa1346340:intergenic 20.0%
!! CTGATGCTTAAAAATTTAAA+AGG + tig0008587:56519-56538 Msa1346340:intergenic 20.0%
!! TAGATAATATCTATACAAAC+TGG - tig0008587:56722-56741 Msa1346340:intron 20.0%
!! ATTGAGAACTTTATAAATGA+AGG - tig0008587:56862-56881 Msa1346340:intron 20.0%
!!! AAATTTAATGTATGATGATG+AGG - tig0008587:56927-56946 Msa1346340:CDS 20.0%
!! TAAAAACAATACATTCATAC+AGG + tig0008587:57116-57135 Msa1346340:intergenic 20.0%
!! AGAATAGATTGCAATTAAAT+AGG - tig0008587:57222-57241 Msa1346340:intron 20.0%
!! GAATAGATTGCAATTAAATA+GGG - tig0008587:57223-57242 Msa1346340:intron 20.0%
!!! AAGTATATGTGTTTTATTTG+TGG - tig0008587:57383-57402 Msa1346340:intron 20.0%
!!! AGCTTTAGAAATAACTAATT+TGG - tig0008587:57418-57437 Msa1346340:intron 20.0%
!!! GCTTTAGAAATAACTAATTT+GGG - tig0008587:57419-57438 Msa1346340:intron 20.0%
!!! AAGAAGTATTTACATGTTTT+AGG - tig0008587:57537-57556 Msa1346340:intron 20.0%
!! TAACAATCAACAGAAATTAA+TGG + tig0008587:57621-57640 Msa1346340:intergenic 20.0%
!! CATTATTAGGAATAAAAGTT+GGG + tig0008587:58156-58175 Msa1346340:intergenic 20.0%
!! AAAATATCAAGATGATTTCT+TGG - tig0008587:58206-58225 Msa1346340:intron 20.0%
!! TTTAATGATAACTGCTTTAA+TGG + tig0008587:58437-58456 Msa1346340:intergenic 20.0%
!!! TATTTATTTTCTCTGGATTT+GGG + tig0008587:58713-58732 Msa1346340:intergenic 20.0%
!!! TTATTTATTTTCTCTGGATT+TGG + tig0008587:58714-58733 Msa1346340:intergenic 20.0%
!!! TTGTATTGGTTTGAAATTAT+TGG - tig0008587:59126-59145 Msa1346340:intron 20.0%
!!! CAAAACATTATTTTGTATCA+CGG - tig0008587:59686-59705 Msa1346340:intron 20.0%
!! AAAATCATAAATCTTTGGAT+TGG - tig0008587:60174-60193 Msa1346340:intron 20.0%
!!! TATTAGTGATGTATTTTAGA+GGG + tig0008587:60257-60276 Msa1346340:intergenic 20.0%
!!! TTATTAGTGATGTATTTTAG+AGG + tig0008587:60258-60277 Msa1346340:intergenic 20.0%
!!! CAACAATAATTTTTCTTCAT+TGG + tig0008587:60420-60439 Msa1346340:intergenic 20.0%
!! GTAAAAAACATCATTTATGA+TGG - tig0008587:60575-60594 Msa1346340:intron 20.0%
!! TCAAAATCATTTCCAATAAA+AGG - tig0008587:60875-60894 Msa1346340:CDS 20.0%
!!! TAAATACTTCTTCCTTTTAT+TGG + tig0008587:60890-60909 Msa1346340:intergenic 20.0%
!!! AAAGGAAGAAGTATTTAAAA+AGG - tig0008587:60893-60912 Msa1346340:CDS 20.0%
!!! TTTTCCAAAAACAATAATGT+AGG - tig0008587:60974-60993 Msa1346340:intron 20.0%
!!! ATGATATAACATTTTTCTGT+AGG - tig0008587:61248-61267 Msa1346340:intron 20.0%
!! AATAAAGAAATCATATCAAG+GGG - tig0008587:61311-61330 Msa1346340:intron 20.0%
!! AAGAAGTTATGCTAAAATAT+GGG - tig0008587:61581-61600 Msa1346340:intron 20.0%
!!! CTTTTATAATTGACAAAATG+GGG + tig0008587:63135-63154 Msa1346340:intergenic 20.0%
!!! TTGTATTTTTTTTTGTTCGA+GGG - tig0008587:63223-63242 Msa1346340:CDS 20.0%
! AATAAAATTAACGGAAGAGA+GGG + tig0008587:52588-52607 None:intergenic 25.0%
! AAATAAAATTAACGGAAGAG+AGG + tig0008587:52589-52608 None:intergenic 25.0%
!!! AATCACTTTTTCTTCGATTT+TGG + tig0008587:52821-52840 None:intergenic 25.0%
! AAGAAATGTGAAAATGGAAA+AGG + tig0008587:53027-53046 Msa1346340:intergenic 25.0%
! AAGGATAAGAAATGTGAAAA+TGG + tig0008587:53033-53052 Msa1346340:intergenic 25.0%
! CTCAGATATTTATTCAACTA+AGG + tig0008587:53052-53071 Msa1346340:intergenic 25.0%
!!! TGTTTATGTTTGAGTTGAAT+TGG - tig0008587:53080-53099 Msa1346340:intron 25.0%
! GTAAAAAAGTTTGGGAAAAT+AGG - tig0008587:53121-53140 Msa1346340:intron 25.0%
!! ATTTTACACTAACATCCAAT+AGG + tig0008587:53233-53252 Msa1346340:intergenic 25.0%
! CTAGTTTAATTAAGTGACAT+AGG - tig0008587:53354-53373 Msa1346340:intron 25.0%
!! TTATGTTGTTTATCCAAATC+AGG + tig0008587:53380-53399 Msa1346340:intergenic 25.0%
! CAAAATAAGCCAATTCAAAT+AGG - tig0008587:53634-53653 Msa1346340:intron 25.0%
! ACATGGTAGTAAGATATAAT+TGG - tig0008587:53658-53677 Msa1346340:intron 25.0%
! TGTTCATATGATAAGCAATT+AGG + tig0008587:53698-53717 Msa1346340:intergenic 25.0%
!!! TATGAACACTATTTCTAGAA+AGG - tig0008587:53710-53729 Msa1346340:intron 25.0%
!!! ATGAACACTATTTCTAGAAA+GGG - tig0008587:53711-53730 Msa1346340:intron 25.0%
! GTATGATTATAATTGAGCAT+GGG + tig0008587:53962-53981 Msa1346340:intergenic 25.0%
! AGTATGATTATAATTGAGCA+TGG + tig0008587:53963-53982 Msa1346340:intergenic 25.0%
!!! TCTGCTTTCATTTTTCAAAT+TGG - tig0008587:54049-54068 Msa1346340:intron 25.0%
! AAAAAATTCTCGCATATTTG+AGG + tig0008587:54150-54169 Msa1346340:intergenic 25.0%
! CACAGTTTAAACTATCAATA+TGG + tig0008587:54212-54231 Msa1346340:intergenic 25.0%
!! CATATTGATAGTTTAAACTG+TGG - tig0008587:54210-54229 Msa1346340:intron 25.0%
! TGTAAGTTTACTGAATTTCT+TGG + tig0008587:54404-54423 Msa1346340:intergenic 25.0%
!!! TTTTTTTGTCTATGCTGAAA+TGG - tig0008587:54629-54648 Msa1346340:CDS 25.0%
!!! GATATATTGATTTGGGAAAA+AGG + tig0008587:54671-54690 Msa1346340:intergenic 25.0%
!! CAACAGAAGATATATTGATT+TGG + tig0008587:54679-54698 Msa1346340:intergenic 25.0%
! TACACAGTGTTAAAATTTCA+CGG + tig0008587:54763-54782 Msa1346340:intergenic 25.0%
!! AGATACAATGATTTGGAAAA+AGG + tig0008587:54881-54900 Msa1346340:intergenic 25.0%
! ATTGTATCTCCTATTGTTAT+AGG - tig0008587:54892-54911 Msa1346340:intron 25.0%
! AAGTATCAATGCATGTTAAA+GGG + tig0008587:55005-55024 Msa1346340:intergenic 25.0%
! ACACAACCAAAAAAAGAAAA+AGG + tig0008587:55234-55253 Msa1346340:intergenic 25.0%
! TTGTGTATGAATTTCCAATT+TGG - tig0008587:55248-55267 Msa1346340:intron 25.0%
! AATTGATCACGTCTATATTA+AGG + tig0008587:55337-55356 Msa1346340:intergenic 25.0%
!! ATAGTTCATTTGGTTTCTTT+GGG + tig0008587:55385-55404 Msa1346340:intergenic 25.0%
!! AATAGTTCATTTGGTTTCTT+TGG + tig0008587:55386-55405 Msa1346340:intergenic 25.0%
! CAAAATGAAGTTCAGTATTT+AGG - tig0008587:55821-55840 Msa1346340:intron 25.0%
! GTATTGAATTAGAAAAGCTT+TGG + tig0008587:55915-55934 Msa1346340:intergenic 25.0%
!! AAGCTTTTCTAATTCAATAC+TGG - tig0008587:55915-55934 Msa1346340:intron 25.0%
!! AGCTTTTCTAATTCAATACT+GGG - tig0008587:55916-55935 Msa1346340:intron 25.0%
! TAGATTTGTCCTACATTTAT+TGG - tig0008587:56033-56052 Msa1346340:intron 25.0%
! GATGGAAAAAATATTACAAG+AGG + tig0008587:56106-56125 Msa1346340:intergenic 25.0%
!! ACAAAGTACTAGTATTATGA+CGG - tig0008587:56170-56189 Msa1346340:CDS 25.0%
! ATAACGTTTGTACATAACTT+TGG - tig0008587:56297-56316 Msa1346340:intron 25.0%
!! AAAGTTTTTCCGAACAATAA+AGG + tig0008587:56445-56464 Msa1346340:intergenic 25.0%
!!! CTTTTTTGCCAATTTAAAAC+AGG - tig0008587:56823-56842 Msa1346340:intron 25.0%
!!! TTCCTTTTCCTGTTTTAAAT+TGG + tig0008587:56834-56853 Msa1346340:intergenic 25.0%
!! GTATCTTATTTAGTGATTAG+TGG - tig0008587:57044-57063 Msa1346340:intron 25.0%
!!! TTTTAGTTGCTTCTTTATTG+TGG - tig0008587:57131-57150 Msa1346340:intron 25.0%
!! GTTGTATTCTTATTTATTGC+TGG - tig0008587:57175-57194 Msa1346340:intron 25.0%
! TGCAATTAAATAGGGTTATA+AGG - tig0008587:57231-57250 Msa1346340:intron 25.0%
!! GAAAATGTATGTTTTCAGAA+TGG + tig0008587:57564-57583 Msa1346340:intergenic 25.0%
! TGTTAATTAGATCTAAGTAG+CGG - tig0008587:57636-57655 Msa1346340:CDS 25.0%
! ATAAAAGTTGGGTAAGAAAA+AGG + tig0008587:58145-58164 Msa1346340:intergenic 25.0%
! GCATTATTAGGAATAAAAGT+TGG + tig0008587:58157-58176 Msa1346340:intergenic 25.0%
!! TGTATTTTATTCACCAAAAG+GGG + tig0008587:58179-58198 Msa1346340:intergenic 25.0%
!! GTGTATTTTATTCACCAAAA+GGG + tig0008587:58180-58199 Msa1346340:intergenic 25.0%
!!! ATTGCTATTGTTTTTCTAGT+AGG - tig0008587:58462-58481 Msa1346340:intron 25.0%
!!! TTGCTATTGTTTTTCTAGTA+GGG - tig0008587:58463-58482 Msa1346340:intron 25.0%
! TAGTAGGGGAAATATTATAT+TGG - tig0008587:58478-58497 Msa1346340:intron 25.0%
!! TAAGATTAATGAGAAGCATA+GGG - tig0008587:58517-58536 Msa1346340:intron 25.0%
! TTTATGAGATCTATGAATCT+CGG - tig0008587:58678-58697 Msa1346340:CDS 25.0%
! ATTACTAAAAGAGAATAGAC+AGG + tig0008587:58839-58858 Msa1346340:intergenic 25.0%
!!! CTTAAATTTTTTTGACTCTG+AGG + tig0008587:58987-59006 Msa1346340:intergenic 25.0%
! CTCAGAGTCAAAAAAATTTA+AGG - tig0008587:58985-59004 Msa1346340:intron 25.0%
! TGAAAATAAAACTAACATGG+AGG + tig0008587:59083-59102 Msa1346340:intergenic 25.0%
!!! ATTGGTTTGAAATTATTGGT+TGG - tig0008587:59130-59149 Msa1346340:intron 25.0%
!!! TGTTTTTATTCCCCAAAATA+CGG - tig0008587:59295-59314 Msa1346340:CDS 25.0%
!! ATAGTTAGTTACCGTATTTT+GGG + tig0008587:59309-59328 Msa1346340:intergenic 25.0%
!! AATAGTTAGTTACCGTATTT+TGG + tig0008587:59310-59329 Msa1346340:intergenic 25.0%
!! ATTGTTATCATTTTCAGTAG+AGG + tig0008587:59370-59389 Msa1346340:intergenic 25.0%
! CTACTGAAAATGATAACAAT+TGG - tig0008587:59370-59389 Msa1346340:intron 25.0%
! AAAAGGGTAATAATTGCATT+TGG + tig0008587:59486-59505 Msa1346340:intergenic 25.0%
! CAAATTTAACTGGACTATAA+GGG + tig0008587:59572-59591 Msa1346340:intergenic 25.0%
! TCAAATTTAACTGGACTATA+AGG + tig0008587:59573-59592 Msa1346340:intergenic 25.0%
! AGATGCATTTCAAATTTAAC+TGG + tig0008587:59582-59601 Msa1346340:intergenic 25.0%
!! AGTTAAATTTGAAATGCATC+TGG - tig0008587:59581-59600 Msa1346340:intron 25.0%
! ATTAAAATCATTCATGCACA+TGG - tig0008587:59957-59976 Msa1346340:intron 25.0%
! TTTCTATGTTACAATCTACT+TGG - tig0008587:60010-60029 Msa1346340:intron 25.0%
!! ATGTTACTTATAGTCAAGAT+AGG - tig0008587:60146-60165 Msa1346340:intron 25.0%
!! TGTTACTTATAGTCAAGATA+GGG - tig0008587:60147-60166 Msa1346340:intron 25.0%
! GGATGAAAATCATAAATCTT+TGG - tig0008587:60169-60188 Msa1346340:intron 25.0%
!!! ATTAGTGATGTATTTTAGAG+GGG + tig0008587:60256-60275 Msa1346340:intergenic 25.0%
! ACTTCAATTCATAATCCATA+AGG - tig0008587:60288-60307 Msa1346340:intron 25.0%
!! ATTTATGATGGAGATAAACA+TGG - tig0008587:60587-60606 Msa1346340:intron 25.0%
!! TTTATGATGGAGATAAACAT+GGG - tig0008587:60588-60607 Msa1346340:intron 25.0%
!! TTGCACAATCATATGATTTT+TGG + tig0008587:60765-60784 Msa1346340:intergenic 25.0%
! TCGAATGAATAATTAGCATT+CGG + tig0008587:61141-61160 Msa1346340:intergenic 25.0%
! CAAGAAGTTATGCTAAAATA+TGG - tig0008587:61580-61599 Msa1346340:intron 25.0%
! AATAATATACGTAGCAAGTT+TGG + tig0008587:61646-61665 Msa1346340:intergenic 25.0%
!!! CTACGTATATTATTGATTTG+AGG - tig0008587:61652-61671 Msa1346340:intron 25.0%
! TTTGATGTAGTCAAAAAGTT+AGG + tig0008587:61830-61849 Msa1346340:intergenic 25.0%
!! TGTTTCTTTCAAATTGCTTT+TGG - tig0008587:61991-62010 Msa1346340:intron 25.0%
! AATTGTACTATAAATCTTGC+AGG - tig0008587:62211-62230 Msa1346340:intron 25.0%
! ATTGTACTATAAATCTTGCA+GGG - tig0008587:62212-62231 Msa1346340:intron 25.0%
! ACCATATATGTGGTTAATAA+TGG - tig0008587:62238-62257 Msa1346340:intron 25.0%
! ACCATTATTAACCACATATA+TGG + tig0008587:62242-62261 Msa1346340:intergenic 25.0%
!!! CAATCTACTTTTATACATGA+TGG + tig0008587:62337-62356 Msa1346340:intergenic 25.0%
!! CTTGTAACTTGTAATGTATA+GGG + tig0008587:62407-62426 Msa1346340:intergenic 25.0%
!! ACTTGTAACTTGTAATGTAT+AGG + tig0008587:62408-62427 Msa1346340:intergenic 25.0%
! AAAGATTAAAAACACGTAAG+TGG + tig0008587:62461-62480 Msa1346340:intergenic 25.0%
! ATATTTCCTTTCTTTCTTAC+AGG - tig0008587:62502-62521 Msa1346340:intron 25.0%
! ATATAAACAATTTCGAGACA+AGG - tig0008587:62566-62585 Msa1346340:intron 25.0%
! ATGATGAATAAAAAAAGCTC+TGG + tig0008587:62645-62664 Msa1346340:intergenic 25.0%
! CTCAAATACAACATTCATAT+TGG + tig0008587:62881-62900 Msa1346340:intergenic 25.0%
! CTCGAACAAAAAAAAATACA+AGG + tig0008587:63224-63243 Msa1346340:intergenic 25.0%
!!! CTTGTATTTTTTTTTGTTCG+AGG - tig0008587:63222-63241 Msa1346340:CDS 25.0%
!! AATGGATATACTATTTCTCT+TGG - tig0008587:63433-63452 Msa1346340:five_prime_UTR 25.0%
! TGATGATGATGATGATGATA+AGG + tig0008587:52686-52705 None:intergenic 30.0%
TCTTCTTCTTGAATGAGTTT+GGG + tig0008587:52761-52780 None:intergenic 30.0%
!! TTTTTCTTCGATTTTGGTGT+CGG + tig0008587:52815-52834 None:intergenic 30.0%
GAAGAAAAAGTGATTCAAGA+AGG - tig0008587:52826-52845 Msa1346340:CDS 30.0%
TTTGAATTCGAACCTATTAC+TGG - tig0008587:52892-52911 Msa1346340:CDS 30.0%
TGAAAATGGAAAAGGATAGA+AGG + tig0008587:53019-53038 Msa1346340:intergenic 30.0%
! GAGAAATAGTTGATTCCTAT+TGG - tig0008587:53215-53234 Msa1346340:CDS 30.0%
! CACTATGTTTAAAATCGTAG+AGG - tig0008587:53320-53339 Msa1346340:intron 30.0%
! TGTTTAAAATCGTAGAGGTA+TGG - tig0008587:53325-53344 Msa1346340:intron 30.0%
TTTGCTTTCATGAGCTATAT+TGG - tig0008587:53507-53526 Msa1346340:intron 30.0%
AAGTACTTATGTGAGTAGAA+AGG - tig0008587:53609-53628 Msa1346340:intron 30.0%
CAAATCATGACGCAATATTA+AGG - tig0008587:53839-53858 Msa1346340:intron 30.0%
GTAAAGTAGAAGAAATTCGA+AGG - tig0008587:54238-54257 Msa1346340:intron 30.0%
TTTCTTGGAAAATTCTGCAT+AGG + tig0008587:54389-54408 Msa1346340:intergenic 30.0%
CTGCAGTTAGTAATTATTGA+TGG - tig0008587:54440-54459 Msa1346340:intron 30.0%
! GTAATTATTGATGGCTTCTA+TGG - tig0008587:54449-54468 Msa1346340:intron 30.0%
! TCTTGAACAATTTTCCTACT+TGG - tig0008587:54511-54530 Msa1346340:intron 30.0%
AAACTTCACAGTTTATGCAT+TGG + tig0008587:54540-54559 Msa1346340:intergenic 30.0%
TGATGCATGTTTAATCTACA+GGG - tig0008587:54711-54730 Msa1346340:intron 30.0%
AAAATTTCACGGTTTATCCA+TGG + tig0008587:54752-54771 Msa1346340:intergenic 30.0%
AGTACTTCTCGTATATCATA+TGG - tig0008587:54782-54801 Msa1346340:intron 30.0%
!! TTTTTCAATCTCTGCTGAAA+TGG - tig0008587:54839-54858 Msa1346340:intron 30.0%
AAAAAGGAACCTTCTACTTA+AGG + tig0008587:54865-54884 Msa1346340:intergenic 30.0%
CAATAGGAGATACAATGATT+TGG + tig0008587:54888-54907 Msa1346340:intergenic 30.0%
TTCATCACTCCTATAACAAT+AGG + tig0008587:54904-54923 Msa1346340:intergenic 30.0%
TGATGAAGCATGTTATATTC+TGG - tig0008587:54917-54936 Msa1346340:intron 30.0%
GATGAAGCATGTTATATTCT+GGG - tig0008587:54918-54937 Msa1346340:intron 30.0%
CAAGTATCAATGCATGTTAA+AGG + tig0008587:55006-55025 Msa1346340:intergenic 30.0%
! ATTCTTTTTCTTGGCATGTA+GGG + tig0008587:55064-55083 Msa1346340:intergenic 30.0%
! TATTCTTTTTCTTGGCATGT+AGG + tig0008587:55065-55084 Msa1346340:intergenic 30.0%
! CGAGGTAATATTCTTTTTCT+TGG + tig0008587:55073-55092 Msa1346340:intergenic 30.0%
AACAAAGAAAAGTAAGCACT+TGG + tig0008587:55125-55144 Msa1346340:intergenic 30.0%
!! AGTGCTTACTTTTCTTTGTT+TGG - tig0008587:55125-55144 Msa1346340:intron 30.0%
! TTGCATTGTTTAAAGTCTGA+CGG - tig0008587:55198-55217 Msa1346340:intron 30.0%
! TTTCCAATTTGGTCTTTCAA+TGG - tig0008587:55259-55278 Msa1346340:intron 30.0%
TTACCATTGAAAGACCAAAT+TGG + tig0008587:55265-55284 Msa1346340:intergenic 30.0%
!!! TATTACGCTTGCTTTTTATC+AGG - tig0008587:55311-55330 Msa1346340:intron 30.0%
AACTATTGTATAATCTAGGC+TGG - tig0008587:55399-55418 Msa1346340:intron 30.0%
ACTATTGTATAATCTAGGCT+GGG - tig0008587:55400-55419 Msa1346340:intron 30.0%
TATGTATAGTTGGATCAGTT+TGG - tig0008587:55872-55891 Msa1346340:intron 30.0%
! GCTTTTCTAATTCAATACTG+GGG - tig0008587:55917-55936 Msa1346340:intron 30.0%
TAAATTAGATCTGACCCAAA+TGG - tig0008587:55980-55999 Msa1346340:intron 30.0%
AATGTAGGACAAATCTAGTT+GGG + tig0008587:56030-56049 Msa1346340:intergenic 30.0%
AAATGTAGGACAAATCTAGT+TGG + tig0008587:56031-56050 Msa1346340:intergenic 30.0%
ATGACATTGCCAATAAATGT+AGG + tig0008587:56045-56064 Msa1346340:intergenic 30.0%
GAAAAAATATTACAAGAGGC+TGG + tig0008587:56102-56121 Msa1346340:intergenic 30.0%
TGCTTTAATAACCAGTTTGA+TGG + tig0008587:56124-56143 Msa1346340:intergenic 30.0%
ACAAACGTTATATGAAGTAC+TGG + tig0008587:56288-56307 Msa1346340:intergenic 30.0%
!!! CAGTTGTTAATTTTTTGTCC+AGG - tig0008587:56577-56596 Msa1346340:intron 30.0%
TAATATCTATACAAACTGGC+TGG - tig0008587:56726-56745 Msa1346340:intron 30.0%
!! TTGAAAAGCAAAAGTACCTT+TGG + tig0008587:56767-56786 Msa1346340:intergenic 30.0%
! TGCCAATTTAAAACAGGAAA+AGG - tig0008587:56829-56848 Msa1346340:intron 30.0%
! TCTTATTTAGTGATTAGTGG+TGG - tig0008587:57047-57066 Msa1346340:intron 30.0%
!! TTAGTGGTGGATATATTTGA+TGG - tig0008587:57060-57079 Msa1346340:intron 30.0%
CCAAACAAAAACTCTTCATT+TGG + tig0008587:57092-57111 Msa1346340:intergenic 30.0%
! CCAAATGAAGAGTTTTTGTT+TGG - tig0008587:57089-57108 Msa1346340:intron 30.0%
AACAGATAAAAAACTGCCAA+CGG - tig0008587:57314-57333 Msa1346340:intron 30.0%
GTTCTTATTGCATAGTAGAA+CGG + tig0008587:57749-57768 Msa1346340:intergenic 30.0%
!!! TTCACTAACTGCTTCTTTTT+TGG - tig0008587:57778-57797 Msa1346340:intron 30.0%
CAATTAGTGTATACGGAAAT+TGG - tig0008587:57993-58012 Msa1346340:intron 30.0%
ATTTCATTATCTCTTTGTCC+TGG - tig0008587:58067-58086 Msa1346340:intron 30.0%
! GGTGTATTTTATTCACCAAA+AGG + tig0008587:58181-58200 Msa1346340:intergenic 30.0%
!! TGCTATTGTTTTTCTAGTAG+GGG - tig0008587:58464-58483 Msa1346340:intron 30.0%
! CTAAGATTAATGAGAAGCAT+AGG - tig0008587:58516-58535 Msa1346340:intron 30.0%
! TTTGGAATCAAAAGCTTCAA+AGG + tig0008587:58552-58571 Msa1346340:intergenic 30.0%
!! GAAGCTTTTGATTCCAAAAA+TGG - tig0008587:58554-58573 Msa1346340:intron 30.0%
ACTAAGAGATACATTGACAA+AGG - tig0008587:58603-58622 Msa1346340:intron 30.0%
CAGGTAGATTATATTGAAAC+AGG - tig0008587:58632-58651 Msa1346340:intron 30.0%
TTATATTGAAACAGGATGCT+AGG - tig0008587:58640-58659 Msa1346340:CDS 30.0%
TTATGAGATCTATGAATCTC+GGG - tig0008587:58679-58698 Msa1346340:CDS 30.0%
ATATAACAAACGCACTATCT+TGG - tig0008587:58857-58876 Msa1346340:intron 30.0%
TTGTGCTATAATTTACGTCA+TGG - tig0008587:58942-58961 Msa1346340:intron 30.0%
! TAGTTAGTTACCGTATTTTG+GGG + tig0008587:59308-59327 Msa1346340:intergenic 30.0%
CGGTAACTAACTATTACTTT+CGG - tig0008587:59315-59334 Msa1346340:CDS 30.0%
CAAAAGGTGAAGAAACTTTA+GGG - tig0008587:59459-59478 Msa1346340:intron 30.0%
AAAAGGTGAAGAAACTTTAG+GGG - tig0008587:59460-59479 Msa1346340:intron 30.0%
!!! GCAATTATTACCCTTTTTTG+AGG - tig0008587:59489-59508 Msa1346340:intron 30.0%
!!! GTTTTTAGCTCCTCAAAAAA+GGG + tig0008587:59502-59521 Msa1346340:intergenic 30.0%
!!! TGTTTTTAGCTCCTCAAAAA+AGG + tig0008587:59503-59522 Msa1346340:intergenic 30.0%
TTCCTCTCAAGTTTAAAAGT+AGG + tig0008587:59534-59553 Msa1346340:intergenic 30.0%
! GTTAGGCTTTCTAAGTATTT+TGG - tig0008587:59626-59645 Msa1346340:intron 30.0%
!! ATCACGGTGTTTTATTGTTT+CGG - tig0008587:59874-59893 Msa1346340:intron 30.0%
TGCTGCTCAATTTAAGAATT+TGG - tig0008587:60033-60052 Msa1346340:intron 30.0%
GTTACTTATAGTCAAGATAG+GGG - tig0008587:60148-60167 Msa1346340:intron 30.0%
ACAATGAGGAAAAAGTTGTT+TGG - tig0008587:60519-60538 Msa1346340:intron 30.0%
CAATGAGGAAAAAGTTGTTT+GGG - tig0008587:60520-60539 Msa1346340:intron 30.0%
ATCATATCCAGAATATGATC+AGG - tig0008587:60727-60746 Msa1346340:intron 30.0%
CATGCTTAAAGTCATTATTG+TGG - tig0008587:60801-60820 Msa1346340:intron 30.0%
AGAGATTTCAAAAGAAGGAA+AGG + tig0008587:60838-60857 Msa1346340:intergenic 30.0%
TCCAAAAACAATAATGTAGG+AGG - tig0008587:60977-60996 Msa1346340:intron 30.0%
! TCCTCCTACATTATTGTTTT+TGG + tig0008587:60981-61000 Msa1346340:intergenic 30.0%
CTAATGTGCATAACCTATAA+AGG + tig0008587:61010-61029 Msa1346340:intergenic 30.0%
! TTTTCATGCTACCATTTGAA+TGG - tig0008587:61087-61106 Msa1346340:intron 30.0%
GCAGTTAATTACCATTCAAA+TGG + tig0008587:61101-61120 Msa1346340:intergenic 30.0%
TAATAGGTATGGAATCATCT+AGG + tig0008587:61494-61513 Msa1346340:intergenic 30.0%
AAGTTATGCTAAAATATGGG+TGG - tig0008587:61584-61603 Msa1346340:intron 30.0%
TTTATATGCCTATAGCTTGA+AGG + tig0008587:61614-61633 Msa1346340:intergenic 30.0%
!! TGGTTCTAGAGTTGATAAAT+TGG + tig0008587:61707-61726 Msa1346340:intergenic 30.0%
GCAAAAGAATAACAAAAGCA+AGG + tig0008587:62018-62037 Msa1346340:intergenic 30.0%
ACTAACAACCTCGATATTAA+CGG + tig0008587:62051-62070 Msa1346340:intergenic 30.0%
TAATTAGTCAATCTCCATCT+TGG - tig0008587:62151-62170 Msa1346340:intron 30.0%
TATAGTACAATTCAACACAC+TGG + tig0008587:62203-62222 Msa1346340:intergenic 30.0%
! TCTCTGAAGAAAAGAAATCA+AGG - tig0008587:62289-62308 Msa1346340:intron 30.0%
! AGAAAAGAAATCAAGGTGTT+AGG - tig0008587:62296-62315 Msa1346340:intron 30.0%
ATTAAAAACACGTAAGTGGA+AGG + tig0008587:62457-62476 Msa1346340:intergenic 30.0%
GAGAAAAGTAGTTGTATGAA+AGG + tig0008587:62681-62700 Msa1346340:intergenic 30.0%
TATTGCCATAGCAAAATTGA+AGG - tig0008587:62806-62825 Msa1346340:intron 30.0%
GAGTAGTACAGTTACAAAAA+TGG - tig0008587:62898-62917 Msa1346340:intron 30.0%
AATAAAATCTCAGGTAGAGA+GGG + tig0008587:62977-62996 Msa1346340:intergenic 30.0%
TAATAAAATCTCAGGTAGAG+AGG + tig0008587:62978-62997 Msa1346340:intergenic 30.0%
! TCTCTACCTGAGATTTTATT+AGG - tig0008587:62977-62996 Msa1346340:CDS 30.0%
!! TGGAATCATTTTTCGTTCAT+TGG - tig0008587:63090-63109 Msa1346340:CDS 30.0%
!! ATCATTTTTCGTTCATTGGA+AGG - tig0008587:63094-63113 Msa1346340:CDS 30.0%
ATAGTAAGAATACATATGCC+TGG - tig0008587:63346-63365 Msa1346340:five_prime_UTR 30.0%
!! CTATTTCTCTTGGTACTTTT+TGG - tig0008587:63443-63462 Msa1346340:five_prime_UTR 30.0%
!! ATGATGATGATAAGGTGTTG+CGG + tig0008587:52678-52697 None:intergenic 35.0%
CTTCTTCTTGAATGAGTTTG+GGG + tig0008587:52760-52779 None:intergenic 35.0%
GTCTTCTTCTTGAATGAGTT+TGG + tig0008587:52762-52781 None:intergenic 35.0%
TCGAATTCAAATTCTCCACT+GGG + tig0008587:52883-52902 Msa1346340:intergenic 35.0%
TTCGAATTCAAATTCTCCAC+TGG + tig0008587:52884-52903 Msa1346340:intergenic 35.0%
AATTCGAACCTATTACTGGT+TGG - tig0008587:52896-52915 Msa1346340:CDS 35.0%
AAATTCCTCCAACCAGTAAT+AGG + tig0008587:52907-52926 Msa1346340:intergenic 35.0%
! ACTATTTCTCCACCTCTATT+AGG + tig0008587:53205-53224 Msa1346340:intergenic 35.0%
! TAAAATCGTAGAGGTATGGT+AGG - tig0008587:53329-53348 Msa1346340:intron 35.0%
TACCATGTGCCTATTTGAAT+TGG + tig0008587:53646-53665 Msa1346340:intergenic 35.0%
! TTGATAGTTTAAACTGTGGG+TGG - tig0008587:54214-54233 Msa1346340:intron 35.0%
TGATAGTTTAAACTGTGGGT+GGG - tig0008587:54215-54234 Msa1346340:intron 35.0%
CTGATGCATGTTTAATCTAC+AGG - tig0008587:54710-54729 Msa1346340:intron 35.0%
!! TGGGTTTGTTATGTAACTGA+GGG - tig0008587:54937-54956 Msa1346340:intron 35.0%
TGATACTTGAGTATGCTTGT+AGG - tig0008587:55017-55036 Msa1346340:intron 35.0%
AAGAAAAGTAAGCACTTGGA+GGG + tig0008587:55121-55140 Msa1346340:intergenic 35.0%
AAAGAAAAGTAAGCACTTGG+AGG + tig0008587:55122-55141 Msa1346340:intergenic 35.0%
GTCTTTCAATGGTAATTTCG+AGG - tig0008587:55270-55289 Msa1346340:intron 35.0%
!! GTTTTTACTTTGGGTTACCA+TGG + tig0008587:55433-55452 Msa1346340:intergenic 35.0%
!!! GGGTTAGCCTATTTTTCTTT+CGG - tig0008587:55956-55975 Msa1346340:intron 35.0%
TCAGTACAAGACTTAACTTC+AGG + tig0008587:56346-56365 Msa1346340:intergenic 35.0%
! ATTATTTGAGACACTAGCAC+TGG + tig0008587:56421-56440 Msa1346340:intergenic 35.0%
!! CCTATTTTATCTAAAACGCC+TGG + tig0008587:56598-56617 Msa1346340:intergenic 35.0%
!! CCAGGCGTTTTAGATAAAAT+AGG - tig0008587:56595-56614 Msa1346340:intron 35.0%
! CTCACAATTTTCATCAGACA+TGG + tig0008587:56686-56705 Msa1346340:intergenic 35.0%
!! AGTTGATAAGCTGAAAGAAG+AGG - tig0008587:56894-56913 Msa1346340:intron 35.0%
! GTTGATAAGCTGAAAGAAGA+GGG - tig0008587:56895-56914 Msa1346340:intron 35.0%
TGAAACATTGAATGTTTCGC+AGG - tig0008587:57257-57276 Msa1346340:intron 35.0%
TTAGTGTATACGGAAATTGG+AGG - tig0008587:57996-58015 Msa1346340:intron 35.0%
! ATTCCTAATAATGCCCCTTT+TGG - tig0008587:58163-58182 Msa1346340:intron 35.0%
! TTCTTGGTTTGATTGAACAC+AGG - tig0008587:58222-58241 Msa1346340:intron 35.0%
AAATGGACACTTGGAATTTC+AGG - tig0008587:58263-58282 Msa1346340:intron 35.0%
CTCATTAATCTTAGTGACAC+CGG + tig0008587:58510-58529 Msa1346340:intergenic 35.0%
!! CAATACTGTATGGCCATTTT+TGG + tig0008587:58570-58589 Msa1346340:intergenic 35.0%
CGAAAGCAAACAATACTGTA+TGG + tig0008587:58580-58599 Msa1346340:intergenic 35.0%
ACATGAATGAAGAGTTCTGT+AGG + tig0008587:58745-58764 Msa1346340:intergenic 35.0%
!!! TAGACAGGTTTTATTGCTGT+TGG + tig0008587:58824-58843 Msa1346340:intergenic 35.0%
AACAGTATCGTAGATGAACA+CGG + tig0008587:58886-58905 Msa1346340:intergenic 35.0%
ATTATCAGAATTGACAGTCC+TGG - tig0008587:59013-59032 Msa1346340:intron 35.0%
TACCAGAACTTACAAATCAG+AGG + tig0008587:59053-59072 Msa1346340:intergenic 35.0%
!! TCCACTTTTGGTCCATTTTA+CGG - tig0008587:59397-59416 Msa1346340:intron 35.0%
! CCTAAAGTTTCTTCACCTTT+TGG + tig0008587:59461-59480 Msa1346340:intergenic 35.0%
CCAAAAGGTGAAGAAACTTT+AGG - tig0008587:59458-59477 Msa1346340:intron 35.0%
!! AGCCTACTTTTAAACTTGAG+AGG - tig0008587:59529-59548 Msa1346340:intron 35.0%
!! TGCATCTGGAATTTTTACCA+TGG - tig0008587:59595-59614 Msa1346340:intron 35.0%
!! TCTGGAATTTTTACCATGGA+TGG - tig0008587:59599-59618 Msa1346340:intron 35.0%
TTACCATGGATGGAATTGTT+AGG - tig0008587:59609-59628 Msa1346340:intron 35.0%
! TATTTTGTATCACGGTGCTT+AGG - tig0008587:59694-59713 Msa1346340:intron 35.0%
TTAGGATGTGGAGAGAAATT+CGG - tig0008587:59712-59731 Msa1346340:intron 35.0%
AAAACCAGTCATTGCTTCAA+TGG - tig0008587:59749-59768 Msa1346340:intron 35.0%
! CTTACGTTAACTGGTTCAAT+TGG - tig0008587:59837-59856 Msa1346340:intron 35.0%
TTGTTTCGGTAGGTGAATAT+AGG - tig0008587:59888-59907 Msa1346340:intron 35.0%
AAAATCATTCATGCACATGG+TGG - tig0008587:59960-59979 Msa1346340:intron 35.0%
CAATGATCAGTCTCAGTAAA+TGG - tig0008587:60077-60096 Msa1346340:intron 35.0%
!!! TCTCAGTTTTGTTCTCCTTA+TGG + tig0008587:60306-60325 Msa1346340:intergenic 35.0%
TCACTGTACAAAATGAACAG+TGG - tig0008587:60450-60469 Msa1346340:intron 35.0%
ATGACACAAGAGAAACAATG+AGG - tig0008587:60505-60524 Msa1346340:intron 35.0%
ATGGAGATAAACATGGGTTT+CGG - tig0008587:60594-60613 Msa1346340:intron 35.0%
GGTTTCAACAATTGGATTTC+TGG - tig0008587:60615-60634 Msa1346340:intron 35.0%
! TTCAACAATTGGATTTCTGG+TGG - tig0008587:60618-60637 Msa1346340:intron 35.0%
ATGATCTCACCAAATTGTGT+AGG + tig0008587:60712-60731 Msa1346340:intergenic 35.0%
AAGCATGATAGTCAAAACTG+TGG + tig0008587:60788-60807 Msa1346340:intergenic 35.0%
GCTGAAGAGATTTCAAAAGA+AGG + tig0008587:60843-60862 Msa1346340:intergenic 35.0%
!! TGGAAAAAGCATTGTAGAAC+AGG + tig0008587:60961-60980 Msa1346340:intergenic 35.0%
GCATTCGGCTATATATCATT+TGG + tig0008587:61126-61145 Msa1346340:intergenic 35.0%
CTAATTATTCATTCGACCTC+TGG - tig0008587:61145-61164 Msa1346340:intron 35.0%
TTATTTAGTATCTCAGCTGC+CGG - tig0008587:61385-61404 Msa1346340:intron 35.0%
! TCGTTGGGTTAGAATCTATT+TGG + tig0008587:61455-61474 Msa1346340:intergenic 35.0%
GATTCTAACCCAACGAAAAT+TGG - tig0008587:61459-61478 Msa1346340:intron 35.0%
! AAACAGCATTTTGTGTACTC+AGG + tig0008587:61976-61995 Msa1346340:intergenic 35.0%
!! ATATCGAGGTTGTTAGTCTT+TGG - tig0008587:62054-62073 Msa1346340:intron 35.0%
ACACACTGGAGAAAAGAATT+AGG + tig0008587:62189-62208 Msa1346340:intergenic 35.0%
TACAAGTTACAAGTTCAACC+TGG - tig0008587:62414-62433 Msa1346340:intron 35.0%
ACAAGTTACAAGTTCAACCT+GGG - tig0008587:62415-62434 Msa1346340:intron 35.0%
ATATGCATTCTGTGCAGATT+TGG + tig0008587:62550-62569 Msa1346340:intergenic 35.0%
!! ACAACTACTTTTCTCAACCT+AGG - tig0008587:62686-62705 Msa1346340:intron 35.0%
!! ATTTTGCTATGGCAATAGCT+CGG + tig0008587:62803-62822 Msa1346340:intergenic 35.0%
!!! ATTGGCCTTCAATTTTGCTA+TGG + tig0008587:62814-62833 Msa1346340:intergenic 35.0%
TTAAAATCTACAGGGAACTG+AGG + tig0008587:63162-63181 Msa1346340:intergenic 35.0%
CTTACTCGCCCATTTAATAA+TGG - tig0008587:63415-63434 Msa1346340:intron 35.0%
!! TCTCTTGGTACTTTTTGGTA+CGG - tig0008587:63448-63467 Msa1346340:five_prime_UTR 35.0%
TTGGAGGAATTTCGTCGTTA+AGG - tig0008587:52915-52934 Msa1346340:CDS 40.0%
GTTCTTAAAATGACGCTTCG+TGG - tig0008587:52985-53004 Msa1346340:CDS 40.0%
GAAAAGGATAGAAGGAAACC+TGG + tig0008587:53011-53030 Msa1346340:intergenic 40.0%
! AGGTGATTTGGCAGAATACA+CGG + tig0008587:53185-53204 Msa1346340:intergenic 40.0%
TCTGCCAAATCACCTAATAG+AGG - tig0008587:53190-53209 Msa1346340:CDS 40.0%
TCCACCTCTATTAGGTGATT+TGG + tig0008587:53197-53216 Msa1346340:intergenic 40.0%
TAAGTGACATAGGCCTGATT+TGG - tig0008587:53364-53383 Msa1346340:intron 40.0%
AGCCAATTCAAATAGGCACA+TGG - tig0008587:53641-53660 Msa1346340:intron 40.0%
AGTGAAGAGTAGATTCTCTC+CGG - tig0008587:54113-54132 Msa1346340:intron 40.0%
! ATTTGAGGTAGAGAAAGTCC+CGG + tig0008587:54135-54154 Msa1346340:intergenic 40.0%
CCTATGATCCTCGAATTTCT+GGG - tig0008587:54178-54197 Msa1346340:intron 40.0%
CTATGATCCTCGAATTTCTG+GGG - tig0008587:54179-54198 Msa1346340:intron 40.0%
GATAGTTTAAACTGTGGGTG+GGG - tig0008587:54216-54235 Msa1346340:intron 40.0%
CTCTCTTGAATGTTCTCTAC+AGG + tig0008587:54592-54611 Msa1346340:intergenic 40.0%
AAAAAGGAGCCTTCTACTGA+AGG + tig0008587:54655-54674 Msa1346340:intergenic 40.0%
! CTGAAATGGCCTTAAGTAGA+AGG - tig0008587:54853-54872 Msa1346340:intron 40.0%
!! CTGGGTTTGTTATGTAACTG+AGG - tig0008587:54936-54955 Msa1346340:intron 40.0%
GCTTGTAGGAAAATTTGTCG+TGG - tig0008587:55031-55050 Msa1346340:intron 40.0%
AGAAAAGTAAGCACTTGGAG+GGG + tig0008587:55120-55139 Msa1346340:intergenic 40.0%
TGGTAATTTCGAGGATTTCG+TGG - tig0008587:55279-55298 Msa1346340:intron 40.0%
GGTAATTTCGAGGATTTCGT+GGG - tig0008587:55280-55299 Msa1346340:intron 40.0%
! TGGGGTGTCAAATGATACAT+TGG - tig0008587:55935-55954 Msa1346340:intron 40.0%
! GGGGTGTCAAATGATACATT+GGG - tig0008587:55936-55955 Msa1346340:intron 40.0%
! AGTATTATGACGGAGAGAGT+AGG - tig0008587:56180-56199 Msa1346340:CDS 40.0%
CATAAAAGGGGAATGATACC+TGG - tig0008587:56203-56222 Msa1346340:CDS 40.0%
TACAGAATTACCAGACTACC+AGG + tig0008587:56224-56243 Msa1346340:intergenic 40.0%
ATCCTCGTAAGAAACTTACC+TGG - tig0008587:56258-56277 Msa1346340:intron 40.0%
TACCAGGTAAGTTTCTTACG+AGG + tig0008587:56263-56282 Msa1346340:intergenic 40.0%
!! ATATGAAGTACTGGACTACC+AGG + tig0008587:56279-56298 Msa1346340:intergenic 40.0%
! ATTGGCAAGTACAAAAGTGC+AGG - tig0008587:56640-56659 Msa1346340:intron 40.0%
GATAAAGTCTCTTCTGCCAA+AGG - tig0008587:56748-56767 Msa1346340:intron 40.0%
ACGGGTAGAAATTTCTTCAG+AGG - tig0008587:57343-57362 Msa1346340:intron 40.0%
TCCACCTCTATGCTTCAAAA+GGG - tig0008587:57585-57604 Msa1346340:CDS 40.0%
!!! ACATCCCTTTTGAAGCATAG+AGG + tig0008587:57592-57611 Msa1346340:intergenic 40.0%
!! GATCTAAGTAGCGGATTTCT+AGG - tig0008587:57645-57664 Msa1346340:CDS 40.0%
!! TGGAAGATGACGGAATCAAT+AGG + tig0008587:57701-57720 Msa1346340:intergenic 40.0%
ATGCACTATGTGGAAGATGA+CGG + tig0008587:57711-57730 Msa1346340:intergenic 40.0%
!! TCACCAAAAGGGGCATTATT+AGG + tig0008587:58169-58188 Msa1346340:intergenic 40.0%
TTGAACACAGGAAATACTCC+CGG - tig0008587:58234-58253 Msa1346340:intron 40.0%
AAGAACTGATAGCCATCATC+CGG - tig0008587:58291-58310 Msa1346340:intron 40.0%
ACATTGACAAAGGCAAGAAC+AGG - tig0008587:58613-58632 Msa1346340:intron 40.0%
! TGCCTCTGATTTGTAAGTTC+TGG - tig0008587:59048-59067 Msa1346340:CDS 40.0%
! ACAATTGGTCACTCCACTTT+TGG - tig0008587:59385-59404 Msa1346340:intron 40.0%
! TTTCTGAGAATGGCCACAAT+TGG + tig0008587:59431-59450 Msa1346340:intergenic 40.0%
!! TGGTCCTTCTTTTCTGAGAA+TGG + tig0008587:59441-59460 Msa1346340:intergenic 40.0%
CTCAGAAAAGAAGGACCAAA+AGG - tig0008587:59443-59462 Msa1346340:intron 40.0%
AAGCCTAACAATTCCATCCA+TGG + tig0008587:59615-59634 Msa1346340:intergenic 40.0%
GCAGAAAGTCTTACGTTAAC+TGG - tig0008587:59828-59847 Msa1346340:intron 40.0%
! GTTAACTGGTTCAATTGGAG+TGG - tig0008587:59842-59861 Msa1346340:intron 40.0%
!! CGGTGTTTTATTGTTTCGGT+AGG - tig0008587:59878-59897 Msa1346340:intron 40.0%
GGTAGGTGAATATAGGAGAA+GGG - tig0008587:59895-59914 Msa1346340:intron 40.0%
!! AGAATTTGGAAGCCTTGTTG+AGG - tig0008587:60047-60066 Msa1346340:intron 40.0%
GAGAACAAAACTGAGAACAG+AGG - tig0008587:60310-60329 Msa1346340:intron 40.0%
CATGTGTGACAGTGTTTCAT+GGG + tig0008587:60488-60507 Msa1346340:intergenic 40.0%
TCATGTGTGACAGTGTTTCA+TGG + tig0008587:60489-60508 Msa1346340:intergenic 40.0%
GTTGTTTGGGAAGAAATGCT+TGG - tig0008587:60533-60552 Msa1346340:intron 40.0%
TGGGTTTCGGTTTCAACAAT+TGG - tig0008587:60607-60626 Msa1346340:intron 40.0%
!! TGGTAAACCTGCTTTTGGTT+AGG - tig0008587:60638-60657 Msa1346340:intron 40.0%
CGCAATGATCCTACACAATT+TGG - tig0008587:60700-60719 Msa1346340:intron 40.0%
ACACGATCCTGATCATATTC+TGG + tig0008587:60737-60756 Msa1346340:intergenic 40.0%
AGAATATGATCAGGATCGTG+TGG - tig0008587:60736-60755 Msa1346340:intron 40.0%
GAATATGATCAGGATCGTGT+GGG - tig0008587:60737-60756 Msa1346340:intron 40.0%
AAAGAAGGAAAGGTCGCTAT+AGG + tig0008587:60828-60847 Msa1346340:intergenic 40.0%
! TGTAGAACAGGTTTTCCTCT+CGG + tig0008587:60949-60968 Msa1346340:intergenic 40.0%
AGGAGGAAATCTGCCTTTAT+AGG - tig0008587:60994-61013 Msa1346340:intron 40.0%
GTACTGTTGTTGATCTCTGT+AGG - tig0008587:61056-61075 Msa1346340:intron 40.0%
!! ATTCGACCTCTGGAATAATG+AGG - tig0008587:61155-61174 Msa1346340:intron 40.0%
TCTTCTCATACAGTTTCGCT+AGG + tig0008587:61283-61302 Msa1346340:intergenic 40.0%
GCGAAACTGTATGAGAAGAT+TGG - tig0008587:61284-61303 Msa1346340:intron 40.0%
!! TATTGATTTGAGGACCTCTC+AGG - tig0008587:61662-61681 Msa1346340:intron 40.0%
!! ATTGATTTGAGGACCTCTCA+GGG - tig0008587:61663-61682 Msa1346340:intron 40.0%
AGTGCAAACTGCAAACACAT+TGG + tig0008587:61727-61746 Msa1346340:intergenic 40.0%
! AGCATTTTGTGTACTCAGGT+GGG + tig0008587:61972-61991 Msa1346340:intergenic 40.0%
AGTCAATCTCCATCTTGGTT+TGG - tig0008587:62156-62175 Msa1346340:intron 40.0%
GGCATATATCCAAACCAAGA+TGG + tig0008587:62168-62187 Msa1346340:intergenic 40.0%
CAAGTTACAAGTTCAACCTG+GGG - tig0008587:62416-62435 Msa1346340:intron 40.0%
TAAGTGGAAGGAAGAACTCT+CGG + tig0008587:62445-62464 Msa1346340:intergenic 40.0%
ATCTGGCCTGTAAGAAAGAA+AGG + tig0008587:62511-62530 Msa1346340:intergenic 40.0%
AGAACGTACAGTCATAGATC+TGG + tig0008587:62601-62620 Msa1346340:intergenic 40.0%
!! ACTACTTTTCTCAACCTAGG+TGG - tig0008587:62689-62708 Msa1346340:intron 40.0%
!! CATGGTTTGGTTGATGCTAT+TGG - tig0008587:62768-62787 Msa1346340:intron 40.0%
!! TTTTGCTATGGCAATAGCTC+GGG + tig0008587:62802-62821 Msa1346340:intergenic 40.0%
ATTGAAGGCCAATATACCTC+AGG - tig0008587:62821-62840 Msa1346340:intron 40.0%
ATATCTCCACAACAGTTACC+TGG + tig0008587:62943-62962 Msa1346340:intergenic 40.0%
! CTGAGATTTTATTAGGCGCA+CGG - tig0008587:62984-63003 Msa1346340:CDS 40.0%
TTTCTGATGGAGTTCAAGCT+AGG - tig0008587:63062-63081 Msa1346340:CDS 40.0%
AGTGAAGTGATGAGCTGACA+AGG + tig0008587:52522-52541 None:intergenic 45.0%
AATTAACGGAAGAGAGGGAG+AGG + tig0008587:52583-52602 None:intergenic 45.0%
!! ATGATGATAAGGTGTTGCGG+CGG + tig0008587:52675-52694 None:intergenic 45.0%
AGTTTGGGGAAGAGAGTGAA+AGG + tig0008587:52746-52765 None:intergenic 45.0%
! GGAAGAATCAAAAGCGCGAA+GGG + tig0008587:52791-52810 None:intergenic 45.0%
! AGGAAGAATCAAAAGCGCGA+AGG + tig0008587:52792-52811 None:intergenic 45.0%
!!! TTCTTCGATTTTGGTGTCGG+AGG + tig0008587:52812-52831 None:intergenic 45.0%
GCTGATGAAGATTATCCCAG+TGG - tig0008587:52865-52884 Msa1346340:CDS 45.0%
! TCGAACCTATTACTGGTTGG+AGG - tig0008587:52899-52918 Msa1346340:CDS 45.0%
AGATGCTCATTGCGTATCCA+TGG - tig0008587:52941-52960 Msa1346340:CDS 45.0%
GATGCTCATTGCGTATCCAT+GGG - tig0008587:52942-52961 Msa1346340:CDS 45.0%
GCCAAATCACCTAATAGAGG+TGG - tig0008587:53193-53212 Msa1346340:CDS 45.0%
AAGGTTGTTGCCTTGTGAGT+TGG - tig0008587:53858-53877 Msa1346340:intron 45.0%
TAGAAACAGCTTTCCGCTTG+CGG - tig0008587:53900-53919 Msa1346340:intron 45.0%
GTGAAGAGTAGATTCTCTCC+GGG - tig0008587:54114-54133 Msa1346340:intron 45.0%
GCCTATGATCCTCGAATTTC+TGG - tig0008587:54177-54196 Msa1346340:intron 45.0%
CCCAGAAATTCGAGGATCAT+AGG + tig0008587:54181-54200 Msa1346340:intergenic 45.0%
AGATAGACCCCAGAAATTCG+AGG + tig0008587:54189-54208 Msa1346340:intergenic 45.0%
! TTATGCATTGGCAGCCAAGT+AGG + tig0008587:54528-54547 Msa1346340:intergenic 45.0%
CTGAAATGGCCTTCAGTAGA+AGG - tig0008587:54643-54662 Msa1346340:CDS 45.0%
ATTTCGAGGATTTCGTGGGA+TGG - tig0008587:55284-55303 Msa1346340:intron 45.0%
TTTCGAGGATTTCGTGGGAT+GGG - tig0008587:55285-55304 Msa1346340:intron 45.0%
TGTATAATCTAGGCTGGGTC+AGG - tig0008587:55405-55424 Msa1346340:intron 45.0%
TAGATCTGACCCAAATGGCT+TGG - tig0008587:55985-56004 Msa1346340:intron 45.0%
AGATCTGACCCAAATGGCTT+GGG - tig0008587:55986-56005 Msa1346340:intron 45.0%
TTACAAGAGGCTGGAACTGA+TGG + tig0008587:56093-56112 Msa1346340:intergenic 45.0%
ACGGAGAGAGTAGGCATAAA+AGG - tig0008587:56189-56208 Msa1346340:CDS 45.0%
CGGAGAGAGTAGGCATAAAA+GGG - tig0008587:56190-56209 Msa1346340:CDS 45.0%
GGAGAGAGTAGGCATAAAAG+GGG - tig0008587:56191-56210 Msa1346340:CDS 45.0%
! TTGAGACACTAGCACTGGAA+TGG + tig0008587:56416-56435 Msa1346340:intergenic 45.0%
AATAGGAGTTGAACCGCAAG+TGG - tig0008587:56612-56631 Msa1346340:intron 45.0%
TTGCCAATCCTTTCCACTTG+CGG + tig0008587:56628-56647 Msa1346340:intergenic 45.0%
GCAGGTTACTGACATGTTGA+AGG - tig0008587:57275-57294 Msa1346340:intron 45.0%
GACATGTTGAAGGAGAGACT+TGG - tig0008587:57285-57304 Msa1346340:intron 45.0%
AAACTGCCAACGGTCGATTA+CGG - tig0008587:57324-57343 Msa1346340:intron 45.0%
!!! CTTTTGAAGCATAGAGGTGG+AGG + tig0008587:57586-57605 Msa1346340:intergenic 45.0%
CTCCACCTCTATGCTTCAAA+AGG - tig0008587:57584-57603 Msa1346340:CDS 45.0%
!!! TCCCTTTTGAAGCATAGAGG+TGG + tig0008587:57589-57608 Msa1346340:intergenic 45.0%
AGCTGCAATGATGCACTATG+TGG + tig0008587:57721-57740 Msa1346340:intergenic 45.0%
! CTTTGTCCTGGTTCTTTCTG+TGG - tig0008587:58079-58098 Msa1346340:intron 45.0%
CATAAGCCACAGAAAGAACC+AGG + tig0008587:58088-58107 Msa1346340:intergenic 45.0%
TGAACACAGGAAATACTCCC+GGG - tig0008587:58235-58254 Msa1346340:intron 45.0%
! AATACTCCCGGGTTAGGAAA+TGG - tig0008587:58246-58265 Msa1346340:intron 45.0%
AAGTGTCCATTTCCTAACCC+GGG + tig0008587:58255-58274 Msa1346340:intergenic 45.0%
CAAGTGTCCATTTCCTAACC+CGG + tig0008587:58256-58275 Msa1346340:intergenic 45.0%
TGGACACTTGGAATTTCAGG+TGG - tig0008587:58266-58285 Msa1346340:intron 45.0%
AGAACTGATAGCCATCATCC+GGG - tig0008587:58292-58311 Msa1346340:intron 45.0%
!! AGGGAGCATTAGTCGAGTTA+AGG - tig0008587:58319-58338 Msa1346340:intron 45.0%
!! GGGAGCATTAGTCGAGTTAA+GGG - tig0008587:58320-58339 Msa1346340:intron 45.0%
! CAGTTAAGTGTCTCTAGCTC+AGG - tig0008587:58344-58363 Msa1346340:intron 45.0%
ATCAGAATTGACAGTCCTGG+AGG - tig0008587:59016-59035 Msa1346340:intron 45.0%
GCCGTAAAATGGACCAAAAG+TGG + tig0008587:59401-59420 Msa1346340:intergenic 45.0%
! TTTGGTCCATTTTACGGCTG+AGG - tig0008587:59403-59422 Msa1346340:intron 45.0%
! TTGGTCCATTTTACGGCTGA+GGG - tig0008587:59404-59423 Msa1346340:intron 45.0%
GTGGCCATTCTCAGAAAAGA+AGG - tig0008587:59434-59453 Msa1346340:intron 45.0%
TCAGCCATTGAAGCAATGAC+TGG + tig0008587:59756-59775 Msa1346340:intergenic 45.0%
CATTGCTTCAATGGCTGATG+TGG - tig0008587:59758-59777 Msa1346340:intron 45.0%
AGCAAGTGGAGGATACTACA+TGG - tig0008587:59782-59801 Msa1346340:intron 45.0%
TGGAGGATACTACATGGCAA+TGG - tig0008587:59788-59807 Msa1346340:intron 45.0%
GGAGGATACTACATGGCAAT+GGG - tig0008587:59789-59808 Msa1346340:intron 45.0%
CGGTAGGTGAATATAGGAGA+AGG - tig0008587:59894-59913 Msa1346340:intron 45.0%
CTGTCGAGACACTAAAGCAA+TGG + tig0008587:60107-60126 Msa1346340:intergenic 45.0%
!! CAGCATCAAAGGTTGGTTTG+GGG + tig0008587:60385-60404 Msa1346340:intergenic 45.0%
!! GCAGCATCAAAGGTTGGTTT+GGG + tig0008587:60386-60405 Msa1346340:intergenic 45.0%
! TGCAGCATCAAAGGTTGGTT+TGG + tig0008587:60387-60406 Msa1346340:intergenic 45.0%
ACTACTGCAGCATCAAAGGT+TGG + tig0008587:60392-60411 Msa1346340:intergenic 45.0%
TCGTACTACTGCAGCATCAA+AGG + tig0008587:60396-60415 Msa1346340:intergenic 45.0%
TGGGAAGAAATGCTTGGAAG+AGG - tig0008587:60539-60558 Msa1346340:intron 45.0%
GGGAAGAAATGCTTGGAAGA+GGG - tig0008587:60540-60559 Msa1346340:intron 45.0%
TTGGAAGAGGGTTAGATAGC+AGG - tig0008587:60552-60571 Msa1346340:intron 45.0%
TGGAAGAGGGTTAGATAGCA+GGG - tig0008587:60553-60572 Msa1346340:intron 45.0%
! TCTGGTGGTAAACCTGCTTT+TGG - tig0008587:60633-60652 Msa1346340:intron 45.0%
TGTCATGCCTAACCAAAAGC+AGG + tig0008587:60648-60667 Msa1346340:intergenic 45.0%
TCTGCTTACTTTCTACCGAG+AGG - tig0008587:60931-60950 Msa1346340:intron 45.0%
GTCTTGCCTCATTATTCCAG+AGG + tig0008587:61164-61183 Msa1346340:intergenic 45.0%
!! GTGCTGATCAGCGTTCTTTT+AGG - tig0008587:61354-61373 Msa1346340:intron 45.0%
!! TCCTTCTCAAAGAGAGTGTC+CGG + tig0008587:61407-61426 Msa1346340:intergenic 45.0%
ACCCAACGAAAATTGGCTGA+TGG - tig0008587:61466-61485 Msa1346340:intron 45.0%
! GCCATCAGCCAATTTTCGTT+GGG + tig0008587:61470-61489 Msa1346340:intergenic 45.0%
! TGCCATCAGCCAATTTTCGT+TGG + tig0008587:61471-61490 Msa1346340:intergenic 45.0%
GTGGACTTCCTTCAAGCTAT+AGG - tig0008587:61603-61622 Msa1346340:intron 45.0%
TTCTGTACGAAATCCCTGAG+AGG + tig0008587:61679-61698 Msa1346340:intergenic 45.0%
! CAGCATTTTGTGTACTCAGG+TGG + tig0008587:61973-61992 Msa1346340:intergenic 45.0%
TGCAGGGCTTACCATATATG+TGG - tig0008587:62228-62247 Msa1346340:intron 45.0%
! GCAAATAGCTCTGCTTCATC+TGG + tig0008587:62528-62547 Msa1346340:intergenic 45.0%
GGTAAAGATGCAGCATCACA+TGG - tig0008587:62750-62769 Msa1346340:intron 45.0%
AGATGCAGCATCACATGGTT+TGG - tig0008587:62755-62774 Msa1346340:intron 45.0%
! GGTTTGGTTGATGCTATTGG+TGG - tig0008587:62771-62790 Msa1346340:intron 45.0%
CTGTTCGTCCTGAGGTATAT+TGG + tig0008587:62832-62851 Msa1346340:intergenic 45.0%
CAATATACCTCAGGACGAAC+AGG - tig0008587:62830-62849 Msa1346340:intron 45.0%
TAACTAACCTGTTCGTCCTG+AGG + tig0008587:62840-62859 Msa1346340:intergenic 45.0%
CGTGCGCCTAATAAAATCTC+AGG + tig0008587:62986-63005 Msa1346340:intergenic 45.0%
CTTCAACGTGCTTTCAACTC+CGG + tig0008587:63020-63039 Msa1346340:intergenic 45.0%
ACGTTGAAGGAACTGCTACA+GGG - tig0008587:63031-63050 Msa1346340:CDS 45.0%
! CAGGGGTTGACATTTTCTGA+TGG - tig0008587:63049-63068 Msa1346340:CDS 45.0%
TGATGGAGTTCAAGCTAGGA+TGG - tig0008587:63066-63085 Msa1346340:CDS 45.0%
GACAAAATGGGGTTGTCGTT+GGG + tig0008587:63124-63143 Msa1346340:intergenic 45.0%
TGACAAAATGGGGTTGTCGT+TGG + tig0008587:63125-63144 Msa1346340:intergenic 45.0%
TGTACGTACAGTGATTGCGA+GGG + tig0008587:63284-63303 Msa1346340:intergenic 45.0%
ATGTACGTACAGTGATTGCG+AGG + tig0008587:63285-63304 Msa1346340:intergenic 45.0%
TATGCCTGGATTGTCTCATC+TGG - tig0008587:63360-63379 Msa1346340:five_prime_UTR 45.0%
AAGTCCAGATGAGACAATCC+AGG + tig0008587:63367-63386 Msa1346340:intergenic 45.0%
TGTCTCATCTGGACTTCTGT+AGG - tig0008587:63371-63390 Msa1346340:five_prime_UTR 45.0%
GTCTCATCTGGACTTCTGTA+GGG - tig0008587:63372-63391 Msa1346340:intron 45.0%
TCTCATCTGGACTTCTGTAG+GGG - tig0008587:63373-63392 Msa1346340:intron 45.0%
!!! AAATTATAACTTTTTATTTT+AGG - tig0008587:57908-57927 Msa1346340:intron 5.0%
!! TACTTTATATTAATAATAAT+AGG + tig0008587:61510-61529 Msa1346340:intergenic 5.0%
CCTTTACGAACACGTTCCCA+TGG + tig0008587:52961-52980 Msa1346340:intergenic 50.0%
CCATGGGAACGTGTTCGTAA+AGG - tig0008587:52958-52977 Msa1346340:CDS 50.0%
TAAAATGACGCTTCGTGGCC+AGG - tig0008587:52990-53009 Msa1346340:CDS 50.0%
! GTTGTTGCCTTGTGAGTTGG+AGG - tig0008587:53861-53880 Msa1346340:intron 50.0%
CTCATGACCTCCAACTCACA+AGG + tig0008587:53871-53890 Msa1346340:intergenic 50.0%
!! GCAAGCGGAAAGCTGTTTCT+AGG + tig0008587:53901-53920 Msa1346340:intergenic 50.0%
AGAAACAGCTTTCCGCTTGC+GGG - tig0008587:53901-53920 Msa1346340:intron 50.0%
CATGGGTGATTAAGCACACG+AGG + tig0008587:53945-53964 Msa1346340:intergenic 50.0%
GGCTGCTAATGCATAAGCCA+TGG - tig0008587:54732-54751 Msa1346340:intron 50.0%
GTTCAAGCCTCATTCCTCAG+AGG - tig0008587:55155-55174 Msa1346340:intron 50.0%
! CAGCTTACCTCTGAGGAATG+AGG + tig0008587:55165-55184 Msa1346340:intergenic 50.0%
CTCATTCCTCAGAGGTAAGC+TGG - tig0008587:55163-55182 Msa1346340:intron 50.0%
GAAAGACCAGCTTACCTCTG+AGG + tig0008587:55172-55191 Msa1346340:intergenic 50.0%
! TGACCCAAATGGCTTGGGTT+GGG - tig0008587:55991-56010 Msa1346340:intron 50.0%
AAGCCCAACCCAAGCCATTT+GGG + tig0008587:55997-56016 Msa1346340:intergenic 50.0%
!! CTTGGGTTGGGCTTGATCAA+CGG - tig0008587:56003-56022 Msa1346340:intron 50.0%
GGGAATGATACCTGGTAGTC+TGG - tig0008587:56211-56230 Msa1346340:CDS 50.0%
GAGTTGAACCGCAAGTGGAA+AGG - tig0008587:56617-56636 Msa1346340:intron 50.0%
GAACCGCAAGTGGAAAGGAT+TGG - tig0008587:56622-56641 Msa1346340:intron 50.0%
AACTGCCAACGGTCGATTAC+GGG - tig0008587:57325-57344 Msa1346340:intron 50.0%
TTCTACCCGTAATCGACCGT+TGG + tig0008587:57333-57352 Msa1346340:intergenic 50.0%
ACAGGAAATACTCCCGGGTT+AGG - tig0008587:58240-58259 Msa1346340:intron 50.0%
! CGGGTTAGGAAATGGACACT+TGG - tig0008587:58254-58273 Msa1346340:intron 50.0%
AACTCGACTAATGCTCCCTG+AGG + tig0008587:58318-58337 Msa1346340:intergenic 50.0%
GAGAAGATTCGCACTGTCAG+AGG - tig0008587:58389-58408 Msa1346340:intron 50.0%
GAAACAGGATGCTAGGACTG+AGG - tig0008587:58647-58666 Msa1346340:CDS 50.0%
TTGGTCCCTCAGCCGTAAAA+TGG + tig0008587:59412-59431 Msa1346340:intergenic 50.0%
GTATCACGGTGCTTAGGATG+TGG - tig0008587:59700-59719 Msa1346340:intron 50.0%
GGTTCAATTGGAGTGGTCAC+AGG - tig0008587:59849-59868 Msa1346340:intron 50.0%
GGAGTGGTCACAGGTAATCA+CGG - tig0008587:59858-59877 Msa1346340:intron 50.0%
!!! GGGGCTACAGGATTTTGGTT+TGG + tig0008587:60366-60385 Msa1346340:intergenic 50.0%
!! GGTTTGGGGCTACAGGATTT+TGG + tig0008587:60371-60390 Msa1346340:intergenic 50.0%
!! AAAGGTTGGTTTGGGGCTAC+AGG + tig0008587:60378-60397 Msa1346340:intergenic 50.0%
TTCACGCGCCGTTAATATCG+AGG - tig0008587:62040-62059 Msa1346340:intron 50.0%
GTTACAAGTTCAACCTGGGG+AGG - tig0008587:62419-62438 Msa1346340:intron 50.0%
CTCAACCTAGGTGGACAAGA+TGG - tig0008587:62698-62717 Msa1346340:intron 50.0%
AACCTAGGTGGACAAGATGG+AGG - tig0008587:62701-62720 Msa1346340:intron 50.0%
AAGATGGAGGAGGTAGCACA+GGG - tig0008587:62714-62733 Msa1346340:intron 50.0%
AGGTAGCACAGGGTAGAGTT+TGG - tig0008587:62724-62743 Msa1346340:intron 50.0%
CTATGGCAATAGCTCGGGAA+AGG + tig0008587:62797-62816 Msa1346340:intergenic 50.0%
GACTTTGCTTGTGCTATGCC+AGG - tig0008587:62922-62941 Msa1346340:intron 50.0%
GCTATGCCAGGTAACTGTTG+TGG - tig0008587:62934-62953 Msa1346340:intron 50.0%
AGGTAGAGAGGGACTAGATC+TGG + tig0008587:62966-62985 Msa1346340:intergenic 50.0%
CGTGCTTTCAACTCCGGTTA+GGG + tig0008587:63014-63033 Msa1346340:intergenic 50.0%
ACGTGCTTTCAACTCCGGTT+AGG + tig0008587:63015-63034 Msa1346340:intergenic 50.0%
! CGGAGTTGAAAGCACGTTGA+AGG - tig0008587:63018-63037 Msa1346340:CDS 50.0%
CACGTTGAAGGAACTGCTAC+AGG - tig0008587:63030-63049 Msa1346340:CDS 50.0%
CGTTGAAGGAACTGCTACAG+GGG - tig0008587:63032-63051 Msa1346340:CDS 50.0%
GGAGTTCAAGCTAGGATGGA+TGG - tig0008587:63070-63089 Msa1346340:CDS 50.0%
GTACGTACAGTGATTGCGAG+GGG + tig0008587:63283-63302 Msa1346340:intergenic 50.0%
!! TAAGGTGTTGCGGCGGTAGA+GGG + tig0008587:52668-52687 None:intergenic 55.0%
!! ATAAGGTGTTGCGGCGGTAG+AGG + tig0008587:52669-52688 None:intergenic 55.0%
TCTCTTCACATGCAGACGCG+AGG + tig0008587:55091-55110 Msa1346340:intergenic 55.0%
! CTGACCCAAATGGCTTGGGT+TGG - tig0008587:55990-56009 Msa1346340:intron 55.0%
CAAGCCCAACCCAAGCCATT+TGG + tig0008587:55998-56017 Msa1346340:intergenic 55.0%
! CTCTAGCTCAGGCATCACTG+CGG - tig0008587:58355-58374 Msa1346340:intron 55.0%
TACGGCTGAGGGACCAATTG+TGG - tig0008587:59415-59434 Msa1346340:intron 55.0%
ATGGCTGATGTGGCAGCAAG+TGG - tig0008587:59768-59787 Msa1346340:intron 55.0%
CATTGCTCAGCGCCTCAACA+AGG + tig0008587:60062-60081 Msa1346340:intergenic 55.0%
! GCCGGACACTCTCTTTGAGA+AGG - tig0008587:61403-61422 Msa1346340:intron 55.0%
CTCCTCCATCTTGTCCACCT+AGG + tig0008587:62706-62725 Msa1346340:intergenic 55.0%
CTAGGTGGACAAGATGGAGG+AGG - tig0008587:62704-62723 Msa1346340:intron 55.0%
CAAGATGGAGGAGGTAGCAC+AGG - tig0008587:62713-62732 Msa1346340:intron 55.0%
GCACAGGGTAGAGTTTGGAC+TGG - tig0008587:62729-62748 Msa1346340:intron 55.0%
!! AAGGTGTTGCGGCGGTAGAG+GGG + tig0008587:52667-52686 None:intergenic 60.0%
ACACGAGGCTTCCACCAGGT+GGG + tig0008587:53930-53949 Msa1346340:intergenic 60.0%
AAGCACACGAGGCTTCCACC+AGG + tig0008587:53934-53953 Msa1346340:intergenic 60.0%
CTAGGCTGGGTCAGGAACCA+TGG - tig0008587:55413-55432 Msa1346340:intron 60.0%
ATAGCCATCATCCGGGCCTC+AGG - tig0008587:58299-58318 Msa1346340:intron 60.0%
TAGCCATCATCCGGGCCTCA+GGG - tig0008587:58300-58319 Msa1346340:intron 60.0%
GACTAATGCTCCCTGAGGCC+CGG + tig0008587:58313-58332 Msa1346340:intergenic 60.0%
TAGCTCAGGCATCACTGCGG+AGG - tig0008587:58358-58377 Msa1346340:intron 60.0%
GCTGATGTGGCAGCAAGTGG+AGG - tig0008587:59771-59790 Msa1346340:intron 60.0%
! AGGTGTTGCGGCGGTAGAGG+GGG + tig0008587:52666-52685 None:intergenic 65.0%
ACGAGGCTTCCACCAGGTGG+GGG + tig0008587:53928-53947 Msa1346340:intergenic 65.0%
CACGAGGCTTCCACCAGGTG+GGG + tig0008587:53929-53948 Msa1346340:intergenic 65.0%
CACACGAGGCTTCCACCAGG+TGG + tig0008587:53931-53950 Msa1346340:intergenic 65.0%
!! GAGGCAAGAGCGTCACCTCC+AGG + tig0008587:59034-59053 Msa1346340:intergenic 65.0%
GAAGAACTCTCGGCCTCCCC+AGG + tig0008587:62435-62454 Msa1346340:intergenic 65.0%
GGCGCACGGAGTTCCCTAAC+CGG - tig0008587:62998-63017 Msa1346340:CDS 65.0%
GTGTTGCGGCGGTAGAGGGG+GGG + tig0008587:52664-52683 None:intergenic 70.0%
! GGTGTTGCGGCGGTAGAGGG+GGG + tig0008587:52665-52684 None:intergenic 70.0%
GCTCCCTGAGGCCCGGATGA+TGG + tig0008587:58306-58325 Msa1346340:intergenic 70.0%
! CGGCGGTAGAGGGGGGGTGT+GGG + tig0008587:52658-52677 None:intergenic 75.0%
CCAGGTGGGGGACCCGCAAG+CGG + tig0008587:53916-53935 Msa1346340:intergenic 75.0%
CTTGCGGGTCCCCCACCTGG+TGG - tig0008587:53916-53935 Msa1346340:intron 75.0%
! GCGGCGGTAGAGGGGGGGTG+TGG + tig0008587:52659-52678 None:intergenic 80.0%
! CCGCTTGCGGGTCCCCCACC+TGG - tig0008587:53913-53932 Msa1346340:intron 80.0%
Chromosome Type Strat End Strand Name
tig0008587 gene 52497 63484 52497 ID=Msa1346340;Name=Msa1346340
tig0008587 mRNA 52497 63484 52497 ID=Msa1346340-mRNA-1;Parent=Msa1346340;Name=Msa1346340-mRNA-1;_AED=0.11;_eAED=0.11;_QI=111|1|1|1|0.92|0.85|14|310|666
tig0008587 exon 52497 53037 52497 ID=Msa1346340-mRNA-1:exon:5453;Parent=Msa1346340-mRNA-1
tig0008587 exon 53130 53273 53130 ID=Msa1346340-mRNA-1:exon:5452;Parent=Msa1346340-mRNA-1
tig0008587 exon 53370 53457 53370 ID=Msa1346340-mRNA-1:exon:5451;Parent=Msa1346340-mRNA-1
tig0008587 exon 54606 54711 54606 ID=Msa1346340-mRNA-1:exon:5450;Parent=Msa1346340-mRNA-1
tig0008587 exon 56111 56265 56111 ID=Msa1346340-mRNA-1:exon:5449;Parent=Msa1346340-mRNA-1
tig0008587 exon 56922 56991 56922 ID=Msa1346340-mRNA-1:exon:5448;Parent=Msa1346340-mRNA-1
tig0008587 exon 57571 57737 57571 ID=Msa1346340-mRNA-1:exon:5447;Parent=Msa1346340-mRNA-1
tig0008587 exon 58635 58702 58635 ID=Msa1346340-mRNA-1:exon:5446;Parent=Msa1346340-mRNA-1
tig0008587 exon 59033 59136 59033 ID=Msa1346340-mRNA-1:exon:5445;Parent=Msa1346340-mRNA-1
tig0008587 exon 59212 59382 59212 ID=Msa1346340-mRNA-1:exon:5444;Parent=Msa1346340-mRNA-1
tig0008587 exon 60805 60942 60805 ID=Msa1346340-mRNA-1:exon:5443;Parent=Msa1346340-mRNA-1
tig0008587 exon 61696 61879 61696 ID=Msa1346340-mRNA-1:exon:5442;Parent=Msa1346340-mRNA-1
tig0008587 exon 62970 63390 62970 ID=Msa1346340-mRNA-1:exon:5441;Parent=Msa1346340-mRNA-1
tig0008587 exon 63420 63484 63420 ID=Msa1346340-mRNA-1:exon:5440;Parent=Msa1346340-mRNA-1
tig0008587 five_prime_UTR 63420 63484 63420 ID=Msa1346340-mRNA-1:five_prime_utr;Parent=Msa1346340-mRNA-1
tig0008587 five_prime_UTR 63345 63390 63345 ID=Msa1346340-mRNA-1:five_prime_utr;Parent=Msa1346340-mRNA-1
tig0008587 CDS 62970 63344 62970 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 61696 61879 61696 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 60805 60942 60805 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 59212 59382 59212 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 59033 59136 59033 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 58635 58702 58635 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 57571 57737 57571 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 56922 56991 56922 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 56111 56265 56111 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 54606 54711 54606 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 53370 53457 53370 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 53130 53273 53130 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 CDS 52807 53037 52807 ID=Msa1346340-mRNA-1:cds;Parent=Msa1346340-mRNA-1
tig0008587 three_prime_UTR 52497 52806 52497 ID=Msa1346340-mRNA-1:three_prime_utr;Parent=Msa1346340-mRNA-1
Gene Sequence

>Msa1346340

ATGTCTACACTTCTTCTACCCACACCCCCCCTCTACCGCCGCAACACCTTATCATCATCATCATCATCATCATCGCTTCAATTTCACTCTCGCTTCTCTTTTTCTTCCTTTCACTCTCTTCCCCAAACTCATTCAAGAAGAAGACGCATTTCCCTTCGCGCTTTTGATTCTTCCTCCGACACCAAAATCGAAGAAAAAGTGATTCAAGAAGGTGAAAAAGTTAGAATTGCTGATGAAGATTATCCCAGTGGAGAATTTGAATTCGAACCTATTACTGGTTGGAGGAATTTCGTCGTTAAGGTTAAGATGCTCATTGCGTATCCATGGGAACGTGTTCGTAAAGGTAGTGTTCTTAAAATGACGCTTCGTGGCCAGATATCTGATCAAGTGAAGAGTAGATTCTCTCCGGGACTTTCTCTACCTCAAATATGCGAGAATTTTTTGAAAGCAGCCTATGATCCTCGAATTTCTGGGGTCTATCTCCATATTGATAGTTTAAACTGTGGGTGGGGTAAAGTAGAAGAAATTCGAAGGCACATCTTGAATTTCAAAAAATCAGGAAAATTTGTCGTGGCTTATCTCCCTACATGCCAAGAAAAAGAATATTACCTCGCGTCTGCATGTGAAGAGATATATGCCCCTCCAAGTGCTTACTTTTCTTTGTTTGGATTGAGTGTTCAAGCCTCATTCCTCAGAGGCGTTTTAGATAAAATAGGAGTTGAACCGCAAGTGGAAAGGATTGGCAAGTACAAAAGTGCAGGAGATCAATTAGCTCGAACAACCATGTCTGATGAAAATTGTGAGATGTTGACTGCATTACTAGATAATATCTATACAAACTGGCTGGATAAAGTCTCTTCTGCCAAAGGAAAAGGAAGAGAAGATATTGAGAACTTTATAAATGAAGGTGTTTATCAAGTTGATAAGCTGAAAGAAGAGGGCCTTATATCAAATTTAATGTATGATGATGAGGTTACTGACATGTTGAAGGAGAGACTTGGAGTGAAAACAGATAAAAAACTGCCAACGGTCGATTACGGGAAATACTCCCGGGTTAGGAAATGGACACTTGGAATTTCAGGTGGCAAAGAACTGATAGCCATCATCCGGGCCTCAGGGAGCATTAGTCGAGTTAAGGGTCAGTTAAGTGTCTCTAGCTCAGGCATCACTGCGGAGGAGTTCATTGAGAAGATTCGCACTGTCAGAGAGTCAAAAAAATTTAAGGCTGCTATTATCAGAATTGACAGTCCTGGAGGTGACGCTCTTGCCTCTGATTTGATGTGGAGAGAAATTCGGCTTTTAGCTGCTTCAAAACCAGTCATTGCTTCAATGGCTGATGTGGCAGCAAGTGGAGGATACTACATGGCAATGGGAACTGATGCTATTGTTGCAGAAAGTCTTACGTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTAGCGAAACTGTATGAGAAGATTGGCTTTAATAAAGAAATCATATCAAGGGGAAGATATGCTGAGCTCGTTAGTGCTGATCAGCGTTCTTTTAGGCCAGATGAAGCAGAGCTATTTGCCAAATCTGCACAGAATGCATATAAACAATTTCGAGACAAGGCAGCTTTATCCAGATCTATGACTGTGGACAAGATGGAGGAGGTAGCACAGGGTAGAGTTTGGACTGGTAAAGATGCAGCATCACATGGTTTGGTTGATGCTATTGGTGGCCTTTCCCGAGCTATTGCCATAGCAAAATTGAAGGCCAATATACCTCAGGACGAACAGGTAACTGTTGTGGAGATATCCAGATCTAGTCCCTCTCTACCTGAGATTTTATTAGGCGCACGGAGTTCCCTAACCGGAGTTGAAAGCACGTTGAAGGAACTGCTACAGGGGTTGACATTTTCTGATGGAGTTCAAGCTAGGATGGATGGAATCATTTTTCGTTCATTGGAAGGATATCCCAACGACAACCCCATTTTGTCAATTATAAAAGATTACCTCAGTTCCCTGTAG

Protein sequence

>Msa1346340

MSTLLLPTPPLYRRNTLSSSSSSSSLQFHSRFSFSSFHSLPQTHSRRRRISLRAFDSSSDTKIEEKVIQEGEKVRIADEDYPSGEFEFEPITGWRNFVVKVKMLIAYPWERVRKGSVLKMTLRGQISDQVKSRFSPGLSLPQICENFLKAAYDPRISGVYLHIDSLNCGWGKVEEIRRHILNFKKSGKFVVAYLPTCQEKEYYLASACEEIYAPPSAYFSLFGLSVQASFLRGVLDKIGVEPQVERIGKYKSAGDQLARTTMSDENCEMLTALLDNIYTNWLDKVSSAKGKGREDIENFINEGVYQVDKLKEEGLISNLMYDDEVTDMLKERLGVKTDKKLPTVDYGKYSRVRKWTLGISGGKELIAIIRASGSISRVKGQLSVSSSGITAEEFIEKIRTVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMADVAASGGYYMAMGTDAIVAESLTLTGSIGVVTGKFNLAKLYEKIGFNKEIISRGRYAELVSADQRSFRPDEAELFAKSAQNAYKQFRDKAALSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKLKANIPQDEQVTVVEISRSSPSLPEILLGARSSLTGVESTLKELLQGLTFSDGVQARMDGIIFRSLEGYPNDNPILSIIKDYLSSL*