Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085700 | A0A072VPP7 | 81.481 | 270 | 7 | 1 | 1 | 270 | 1 | 227 | 2.54e-152 | 433 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042550 | Msa0085700 | -0.801555 | 8.518316e-49 | -8.615850e-47 |
| Msa0068740 | Msa0085700 | 0.826924 | 2.076756e-54 | -8.615850e-47 |
| Msa0085700 | Msa0124550 | -0.801978 | 6.976021e-49 | -8.615850e-47 |
| Msa0085700 | Msa0178510 | -0.808381 | 3.185113e-50 | -8.615850e-47 |
| Msa0085700 | Msa0347120 | -0.810330 | 1.216473e-50 | -8.615850e-47 |
| Msa0085700 | Msa0462200 | -0.823297 | 1.494118e-53 | -8.615850e-47 |
| Msa0085700 | Msa0679550 | -0.809894 | 1.510257e-50 | -8.615850e-47 |
| Msa0085700 | Msa0715410 | -0.800133 | 1.662344e-48 | -8.615850e-47 |
| Msa0085700 | Msa0751850 | -0.806668 | 7.354923e-50 | -8.615850e-47 |
| Msa0085700 | Msa0827350 | 0.824239 | 8.989674e-54 | -8.615850e-47 |
| Msa0085700 | Msa0877710 | -0.802386 | 5.749745e-49 | -8.615850e-47 |
| Msa0085700 | Msa0992600 | -0.808384 | 3.180787e-50 | -8.615850e-47 |
| Msa0085700 | Msa1031820 | -0.807710 | 4.425329e-50 | -8.615850e-47 |
| Msa0085700 | Msa1063690 | -0.816086 | 6.630060e-52 | -8.615850e-47 |
| Msa0085700 | Msa1115430 | -0.801676 | 8.048425e-49 | -8.615850e-47 |
| Msa0085700 | Msa1118760 | -0.800037 | 1.738861e-48 | -8.615850e-47 |
| Msa0085700 | Msa1371940 | -0.803658 | 3.138036e-49 | -8.615850e-47 |
| Msa0085700 | Msa1372150 | -0.807623 | 4.618155e-50 | -8.615850e-47 |
| Msa0085700 | Msa1406110 | 0.880738 | 4.285285e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085700 | MtrunA17_Chr1g0201551 | 95.676 | 185 | 8 | 0 | 1 | 185 | 1 | 185 | 8.09e-123 | 348 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0085700 | AT1G22790.1 | 54.106 | 207 | 77 | 6 | 1 | 190 | 1 | 206 | 1.07e-60 | 191 |
| Msa0085700 | AT1G22790.2 | 54.106 | 207 | 77 | 6 | 1 | 190 | 1 | 206 | 1.07e-60 | 191 |
| Msa0085700 | AT1G34010.3 | 43.548 | 186 | 79 | 6 | 1 | 185 | 1 | 161 | 2.74e-39 | 135 |
| Msa0085700 | AT1G34010.1 | 43.548 | 186 | 79 | 6 | 1 | 185 | 1 | 161 | 2.74e-39 | 135 |
| Msa0085700 | AT1G34010.2 | 43.548 | 186 | 79 | 6 | 1 | 185 | 66 | 226 | 8.97e-39 | 136 |
Find 114 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGGCTTACTTGTTATTC+TGG | 0.167627 | 1_2:-65961402 | Msa0085700:CDS |
| TATGCCTCTCCTCAAGCTTT+TGG | 0.191293 | 1_2:-65962952 | Msa0085700:CDS |
| TTCTTCTCTGCTTCGGCTTC+AGG | 0.195978 | 1_2:-65964394 | Msa0085700:CDS |
| GGGCCTGAGCCTACTCCTTT+TGG | 0.208630 | 1_2:-65964362 | Msa0085700:CDS |
| CATGTCCTATAAACCATTTC+AGG | 0.267175 | 1_2:+65961378 | None:intergenic |
| GGAGTTGAGGGTCAGATTCT+TGG | 0.321871 | 1_2:+65964278 | None:intergenic |
| TGAAGTTTCATTAAGACGTT+AGG | 0.331449 | 1_2:-65960636 | Msa0085700:three_prime_UTR |
| CTTCTTTCTGCTTGATCACC+AGG | 0.334073 | 1_2:+65963956 | None:intergenic |
| TGCTTTGGTCGCACTTCCGC+AGG | 0.348461 | 1_2:-65964205 | Msa0085700:CDS |
| ATCACCAATGTCAACGATAA+TGG | 0.368141 | 1_2:+65961476 | None:intergenic |
| TTGTTATTCTGGACCTGAAA+TGG | 0.369570 | 1_2:-65961391 | Msa0085700:intron |
| CTGATGTTATTTGCAGTAGA+AGG | 0.376579 | 1_2:-65964424 | Msa0085700:CDS |
| TGTGCCTCCTTTGTCTGCTT+TGG | 0.387522 | 1_2:-65964220 | Msa0085700:CDS |
| CTTGGTCTACCAACTGGTAA+TGG | 0.398010 | 1_2:+65964296 | None:intergenic |
| TGGAGGATTCTTCTCTGCTT+CGG | 0.400442 | 1_2:-65964401 | Msa0085700:CDS |
| TCAGATGATGAATATGATAA+TGG | 0.406348 | 1_2:-65960695 | Msa0085700:CDS |
| TCTTCTCTGCTTCGGCTTCA+GGG | 0.410976 | 1_2:-65964393 | Msa0085700:CDS |
| ACCTGATGCGTCTTGCTCAT+TGG | 0.411504 | 1_2:+65963997 | None:intergenic |
| GCGGGAAAGGCGATTCTTTG+TGG | 0.428089 | 1_2:+65964246 | None:intergenic |
| TTCAACTGCAGTGAAGTAGA+TGG | 0.429913 | 1_2:-65960719 | Msa0085700:intron |
| CTTAACACAAATTCGTCAAC+AGG | 0.431027 | 1_2:+65960291 | None:intergenic |
| CCTCATTCCTTTGACCCAAA+AGG | 0.437528 | 1_2:+65964347 | None:intergenic |
| AACAAATTGATGACAGGTAT+AGG | 0.442079 | 1_2:+65960457 | None:intergenic |
| TGATAACAATGATGGTATAA+AGG | 0.444241 | 1_2:-65964080 | Msa0085700:CDS |
| GCATTTGTTGTTCTTCTAAG+AGG | 0.444468 | 1_2:-65964493 | Msa0085700:five_prime_UTR |
| TATATACACCAACATGTTGC+GGG | 0.450809 | 1_2:-65960530 | Msa0085700:three_prime_UTR |
| TCCTTTCCATCATTAGAAAC+CGG | 0.451042 | 1_2:+65964118 | None:intergenic |
| TGCAGCTATGGTGTTTACCT+TGG | 0.453966 | 1_2:-65961419 | Msa0085700:CDS |
| TGGAAGCCAGCTGGAGTTGA+GGG | 0.459813 | 1_2:+65964266 | None:intergenic |
| TGGTGAAACATCATGTTGTT+GGG | 0.460560 | 1_2:+65964147 | None:intergenic |
| ACCAATGAGCAAGACGCATC+AGG | 0.466072 | 1_2:-65963998 | Msa0085700:CDS |
| AGACGTTAGGGTCATTCATC+GGG | 0.469465 | 1_2:-65960623 | Msa0085700:three_prime_UTR |
| TATAAATTAAGTCCATGTTC+CGG | 0.470758 | 1_2:-65960232 | Msa0085700:three_prime_UTR |
| CAGATTCTTGGTCTACCAAC+TGG | 0.473927 | 1_2:+65964290 | None:intergenic |
| ATAACATCAGTTCTGCTCAT+TGG | 0.474198 | 1_2:+65964437 | None:intergenic |
| AGGAGGCACACCCGCGGGAA+AGG | 0.474287 | 1_2:+65964233 | None:intergenic |
| CTCTTAAAAGTAGCATTAGA+AGG | 0.478292 | 1_2:-65964054 | Msa0085700:CDS |
| GTTCCACGGTGCAACTCTCA+TGG | 0.480426 | 1_2:+65964318 | None:intergenic |
| TGGGTTGGTCCGACTTTAAG+AGG | 0.483807 | 1_2:+65964166 | None:intergenic |
| GGGCTACCGGTTTCTAATGA+TGG | 0.487640 | 1_2:-65964124 | Msa0085700:CDS |
| GTGGAAGCCAGCTGGAGTTG+AGG | 0.488108 | 1_2:+65964265 | None:intergenic |
| CAACAACATGATGTTTCACC+AGG | 0.491096 | 1_2:-65964145 | Msa0085700:CDS |
| CTGGTGAAACATCATGTTGT+TGG | 0.491892 | 1_2:+65964146 | None:intergenic |
| ATAAAACAATTGCCGGAACA+TGG | 0.498814 | 1_2:+65960220 | None:intergenic |
| TTCAATTTACATTATCGCAC+AGG | 0.500378 | 1_2:+65960655 | None:intergenic |
| ATCTGACCCTCAACTCCAGC+TGG | 0.500906 | 1_2:-65964272 | Msa0085700:CDS |
| GGACATGTCGTTTGTACTCC+TGG | 0.502337 | 1_2:-65963974 | Msa0085700:CDS |
| GAAGTTTCATTAAGACGTTA+GGG | 0.506913 | 1_2:-65960635 | Msa0085700:three_prime_UTR |
| TGAAGCAAGGAGTGGCGCTT+CGG | 0.507113 | 1_2:-65962981 | Msa0085700:intron |
| GTCGGCGGCGCGTGGATCGA+CGG | 0.510656 | 1_2:+65965346 | None:intergenic |
| TGATGTTTCACCAGGGCTAC+CGG | 0.511052 | 1_2:-65964137 | Msa0085700:CDS |
| AAGACGTTAGGGTCATTCAT+CGG | 0.512007 | 1_2:-65960624 | Msa0085700:three_prime_UTR |
| AAAGCTTGAGGAGAGGCATA+TGG | 0.514117 | 1_2:+65962955 | None:intergenic |
| GACAAAGGAGGCACACCCGC+GGG | 0.516351 | 1_2:+65964228 | None:intergenic |
| CATATAGATGATAACAATGA+TGG | 0.521660 | 1_2:-65964088 | Msa0085700:CDS |
| TCATTAGAAACCGGTAGCCC+TGG | 0.527877 | 1_2:+65964127 | None:intergenic |
| GATTCTTTGTGGAAGCCAGC+TGG | 0.528710 | 1_2:+65964257 | None:intergenic |
| GACCTGTGCTTCTGATTCTC+CGG | 0.532469 | 1_2:-65965326 | Msa0085700:intron |
| TTATTTGCAGTAGAAGGTGG+AGG | 0.532906 | 1_2:-65964418 | Msa0085700:CDS |
| GACCCAAAAGGAGTAGGCTC+AGG | 0.534302 | 1_2:+65964359 | None:intergenic |
| CTGGTGATCAAGCAGAAAGA+AGG | 0.536495 | 1_2:-65963955 | Msa0085700:CDS |
| CGTGGATCGACGGTGAAGAA+TGG | 0.539299 | 1_2:+65965356 | None:intergenic |
| AAGCACAGGTCGGCGGCGCG+TGG | 0.540061 | 1_2:+65965338 | None:intergenic |
| GAAACATCATGTTGTTGGGT+TGG | 0.541784 | 1_2:+65964151 | None:intergenic |
| ATCTTTAACACAACATCACT+CGG | 0.541788 | 1_2:-65960594 | Msa0085700:three_prime_UTR |
| AGCACCATTATCGTTGACAT+TGG | 0.544239 | 1_2:-65961480 | Msa0085700:CDS |
| ATTATCGTTGACATTGGTGA+TGG | 0.545602 | 1_2:-65961474 | Msa0085700:CDS |
| ATGAACTAAATACTATGCTA+TGG | 0.549688 | 1_2:-65960367 | Msa0085700:three_prime_UTR |
| TTCCACGGTGCAACTCTCAT+GGG | 0.559762 | 1_2:+65964319 | None:intergenic |
| GTCAACGATAATGGTGCTGA+AGG | 0.560710 | 1_2:+65961485 | None:intergenic |
| AGACAAAGGAGGCACACCCG+CGG | 0.568338 | 1_2:+65964227 | None:intergenic |
| CAAAGAATCGCCTTTCCCGC+GGG | 0.568676 | 1_2:-65964243 | Msa0085700:CDS |
| TTCGGCTTCAGGGTATAGCA+AGG | 0.570156 | 1_2:-65964383 | Msa0085700:CDS |
| GGTCCGACTTTAAGAGGTGA+TGG | 0.570924 | 1_2:+65964172 | None:intergenic |
| TACCGGAGAATCAGAAGCAC+AGG | 0.572060 | 1_2:+65965324 | None:intergenic |
| ATGTTATTTGCAGTAGAAGG+TGG | 0.573304 | 1_2:-65964421 | Msa0085700:CDS |
| ACCAACTGGTAATGGTTCCA+CGG | 0.576625 | 1_2:+65964304 | None:intergenic |
| ACCGGTTTCTAATGATGGAA+AGG | 0.577810 | 1_2:-65964119 | Msa0085700:CDS |
| GCTTTGGTCGCACTTCCGCA+GGG | 0.579792 | 1_2:-65964204 | Msa0085700:CDS |
| GAGTGATGTTGTGTTAAAGA+TGG | 0.580276 | 1_2:+65960596 | None:intergenic |
| GTCTCTACTATTGCTTGCTG+CGG | 0.582044 | 1_2:-65960494 | Msa0085700:three_prime_UTR |
| TAATAAATCAGTTTCTGTTG+AGG | 0.585466 | 1_2:-65964023 | Msa0085700:CDS |
| ATTATGCGGCCGTGAGTCGT+CGG | 0.587617 | 1_2:+65965382 | None:intergenic |
| GACGAATTTGTGTTAAGACT+AGG | 0.589749 | 1_2:-65960285 | Msa0085700:three_prime_UTR |
| ACAAAGAATCGCCTTTCCCG+CGG | 0.591445 | 1_2:-65964244 | Msa0085700:CDS |
| TCCTTTGACCCAAAAGGAGT+AGG | 0.598947 | 1_2:+65964353 | None:intergenic |
| TGTGGGAAGGAATGCAGCTA+TGG | 0.599320 | 1_2:-65961431 | Msa0085700:CDS |
| TTTGTTGTTCTTCTAAGAGG+AGG | 0.605961 | 1_2:-65964490 | Msa0085700:five_prime_UTR |
| ATATATACACCAACATGTTG+CGG | 0.607841 | 1_2:-65960531 | Msa0085700:three_prime_UTR |
| TTATACAACAAATTGATGAC+AGG | 0.608212 | 1_2:+65960451 | None:intergenic |
| GAATCAGAAGCACAGGTCGG+CGG | 0.612402 | 1_2:+65965331 | None:intergenic |
| AAATACGAGAATTTGAGCCC+AGG | 0.614035 | 1_2:-65963892 | Msa0085700:intron |
| CCAGAATAACAAGTAAGCCA+AGG | 0.616750 | 1_2:+65961402 | None:intergenic |
| CAGAAAGAAGGAGAGTGCAG+TGG | 0.619006 | 1_2:-65963943 | Msa0085700:CDS |
| TTGTTATCATCTATATGAGA+GGG | 0.619691 | 1_2:+65964094 | None:intergenic |
| CACAGACACCCAAAAGCTTG+AGG | 0.620393 | 1_2:+65962943 | None:intergenic |
| TCGGCTTCAGGGTATAGCAA+GGG | 0.629191 | 1_2:-65964382 | Msa0085700:CDS |
| GTTGGTGTATATATCTCCAA+AGG | 0.630828 | 1_2:+65960540 | None:intergenic |
| ATTGTTATCATCTATATGAG+AGG | 0.632848 | 1_2:+65964093 | None:intergenic |
| CAATCACTCCCGCAACATGT+TGG | 0.633931 | 1_2:+65960522 | None:intergenic |
| ACCGTGGAACCATTACCAGT+TGG | 0.634769 | 1_2:-65964305 | Msa0085700:CDS |
| AGTGCGACCAAAGCAGACAA+AGG | 0.639795 | 1_2:+65964213 | None:intergenic |
| GTGAAGAATGGTAGATTATG+CGG | 0.646865 | 1_2:+65965368 | None:intergenic |
| ACTCCATCACCTCTTAAAGT+CGG | 0.647699 | 1_2:-65964175 | Msa0085700:CDS |
| GAAACTGATTTATTACTGTG+TGG | 0.656477 | 1_2:+65964031 | None:intergenic |
| ATGCGGCCGTGAGTCGTCGG+AGG | 0.658910 | 1_2:+65965385 | None:intergenic |
| GCGACCAAAGCAGACAAAGG+AGG | 0.660173 | 1_2:+65964216 | None:intergenic |
| AATGAGCAAGACGCATCAGG+TGG | 0.664133 | 1_2:-65963995 | Msa0085700:CDS |
| ACACCCAAAAGCTTGAGGAG+AGG | 0.681513 | 1_2:+65962948 | None:intergenic |
| GTGCAGTGGACAGATGCTTG+CGG | 0.709323 | 1_2:-65963929 | Msa0085700:CDS |
| GGAGAATCAGAAGCACAGGT+CGG | 0.727041 | 1_2:+65965328 | None:intergenic |
| AACAACATGATGTTTCACCA+GGG | 0.731260 | 1_2:-65964144 | Msa0085700:CDS |
| TGATGGAGTATCATGCCCTG+CGG | 0.746184 | 1_2:+65964189 | None:intergenic |
| AACCCATGAGAGTTGCACCG+TGG | 0.749362 | 1_2:-65964321 | Msa0085700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATATATAAAAATCATTTA+TGG | - | chr1_2:65961221-65961240 | Msa0085700:intron | 10.0% |
| !! | TGCAAAAAAAAAAAAAAAAA+AGG | - | chr1_2:65963081-65963100 | Msa0085700:intron | 10.0% |
| !! | GCAAAAAAAAAAAAAAAAAA+GGG | - | chr1_2:65963082-65963101 | Msa0085700:intron | 10.0% |
| !!! | ATGATTATTTTGTTATCTTA+TGG | - | chr1_2:65961000-65961019 | Msa0085700:intron | 15.0% |
| !! | TTTAAAAGATATGAAAATGA+AGG | - | chr1_2:65961110-65961129 | Msa0085700:intron | 15.0% |
| !! | AATAAAATATTCAAATACCT+GGG | + | chr1_2:65961813-65961832 | None:intergenic | 15.0% |
| !! | AAATAAAATATTCAAATACC+TGG | + | chr1_2:65961814-65961833 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr1_2:65962109-65962128 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr1_2:65962108-65962127 | Msa0085700:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | - | chr1_2:65962235-65962254 | Msa0085700:intron | 15.0% |
| !!! | TAATTTCTTTTGATCTATTT+TGG | - | chr1_2:65962671-65962690 | Msa0085700:intron | 15.0% |
| !!! | AGGTGAATAATAATAAATTT+TGG | - | chr1_2:65962770-65962789 | Msa0085700:intron | 15.0% |
| !!! | GGTGAATAATAATAAATTTT+GGG | - | chr1_2:65962771-65962790 | Msa0085700:intron | 15.0% |
| !! | TTTATATGATGTTTGATTAA+TGG | - | chr1_2:65962817-65962836 | Msa0085700:intron | 15.0% |
| !! | AAAAATGATCATAATAGAAT+AGG | + | chr1_2:65962976-65962995 | None:intergenic | 15.0% |
| !!! | TCTAAACAAATTTTTTTACA+GGG | + | chr1_2:65963155-65963174 | None:intergenic | 15.0% |
| !!! | ATCTAAACAAATTTTTTTAC+AGG | + | chr1_2:65963156-65963175 | None:intergenic | 15.0% |
| !! | AAATTGAACTAAAATCAAAT+TGG | + | chr1_2:65963517-65963536 | None:intergenic | 15.0% |
| !! | TTGAAAAAATGTTTATAAGT+AGG | - | chr1_2:65963765-65963784 | Msa0085700:intron | 15.0% |
| !! | AATTACTTTCTATCAAATAT+TGG | + | chr1_2:65964664-65964683 | None:intergenic | 15.0% |
| !! | TATTTGATAGAAAGTAATTT+AGG | - | chr1_2:65964665-65964684 | Msa0085700:intron | 15.0% |
| !!! | TCCTTTTTATCTGTTTTTTT+GGG | - | chr1_2:65960822-65960841 | Msa0085700:intron | 20.0% |
| !!! | TACATATTCAACATGTTTTT+TGG | - | chr1_2:65960852-65960871 | Msa0085700:intron | 20.0% |
| !!! | ATCTGATTATTGATTTCTTT+TGG | - | chr1_2:65961155-65961174 | Msa0085700:intron | 20.0% |
| !! | TCCTGACAATAAAATAAAAT+CGG | + | chr1_2:65961914-65961933 | None:intergenic | 20.0% |
| !!! | ATCAAACAAAATAAAGTATC+AGG | + | chr1_2:65961947-65961966 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr1_2:65962118-65962137 | None:intergenic | 20.0% |
| !!! | TAGTTTTAAAAGTGATACTT+TGG | - | chr1_2:65962132-65962151 | Msa0085700:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr1_2:65962195-65962214 | Msa0085700:intron | 20.0% |
| !!! | AGTTGTCTTTAATTTTCAAA+TGG | + | chr1_2:65962590-65962609 | None:intergenic | 20.0% |
| !! | AGAAATTAATTCAAATTTGC+AGG | + | chr1_2:65962659-65962678 | None:intergenic | 20.0% |
| !!! | ATTTTATTTTCCGATTTGTT+TGG | - | chr1_2:65962898-65962917 | Msa0085700:intron | 20.0% |
| !! | AAAACAAAAACCAAACAAAT+CGG | + | chr1_2:65962911-65962930 | None:intergenic | 20.0% |
| !!! | TTTTTGACCTTTATAATTAG+AGG | - | chr1_2:65962927-65962946 | Msa0085700:intron | 20.0% |
| !!! | CTAAACAAATTTTTTTACAG+GGG | + | chr1_2:65963154-65963173 | None:intergenic | 20.0% |
| !! | TATTGTTGAACGTAATAAAT+TGG | + | chr1_2:65963439-65963458 | None:intergenic | 20.0% |
| !! | AAAAAATGTTTATAAGTAGG+AGG | - | chr1_2:65963768-65963787 | Msa0085700:intron | 20.0% |
| !! | ATTAAGTAGAATACATAACA+TGG | - | chr1_2:65963920-65963939 | Msa0085700:CDS | 20.0% |
| !!! | AAGAATGAAAAAAAGTACAT+GGG | + | chr1_2:65964016-65964035 | None:intergenic | 20.0% |
| !!! | AAAGAATGAAAAAAAGTACA+TGG | + | chr1_2:65964017-65964036 | None:intergenic | 20.0% |
| !! | ACTAGAATAGAAAAAGTTTA+TGG | - | chr1_2:65964637-65964656 | Msa0085700:intron | 20.0% |
| !! | TATCATATAGAATCAATTAC+AGG | + | chr1_2:65964936-65964955 | None:intergenic | 20.0% |
| ! | AGCATAAATCAACTACTTTA+TGG | - | chr1_2:65960798-65960817 | Msa0085700:intron | 25.0% |
| !!! | CTCCTTTTTATCTGTTTTTT+TGG | - | chr1_2:65960821-65960840 | Msa0085700:intron | 25.0% |
| ! | ACCCAAAAAAACAGATAAAA+AGG | + | chr1_2:65960826-65960845 | None:intergenic | 25.0% |
| !!! | TTTTTATCTGTTTTTTTGGG+TGG | - | chr1_2:65960825-65960844 | Msa0085700:intron | 25.0% |
| !!! | GTCTTAAAGTGTTTTTTGTT+TGG | - | chr1_2:65960896-65960915 | Msa0085700:intron | 25.0% |
| !!! | AATGAAGGATTTTGAAACTA+AGG | - | chr1_2:65961125-65961144 | Msa0085700:intron | 25.0% |
| !!! | TTGATTTCTTTTGGTTGAAA+AGG | - | chr1_2:65961164-65961183 | Msa0085700:intron | 25.0% |
| ! | TTGTTATCATCTATATGAGA+GGG | + | chr1_2:65961594-65961613 | None:intergenic | 25.0% |
| ! | ATTGTTATCATCTATATGAG+AGG | + | chr1_2:65961595-65961614 | None:intergenic | 25.0% |
| ! | CATATAGATGATAACAATGA+TGG | - | chr1_2:65961597-65961616 | Msa0085700:intron | 25.0% |
| ! | TGATAACAATGATGGTATAA+AGG | - | chr1_2:65961605-65961624 | Msa0085700:intron | 25.0% |
| ! | TAATAAATCAGTTTCTGTTG+AGG | - | chr1_2:65961662-65961681 | Msa0085700:intron | 25.0% |
| ! | CCTGACAATAAAATAAAATC+GGG | + | chr1_2:65961913-65961932 | None:intergenic | 25.0% |
| !!! | TTGTTGATTCCAAATGATAT+CGG | - | chr1_2:65962481-65962500 | Msa0085700:intron | 25.0% |
| ! | TTAAGGATCTACAAGTTTAA+TGG | + | chr1_2:65962523-65962542 | None:intergenic | 25.0% |
| !! | TGTTGTTTATAAACTTCTTG+AGG | + | chr1_2:65963007-65963026 | None:intergenic | 25.0% |
| ! | CAAAGAATCTTCAAATTACA+AGG | + | chr1_2:65963184-65963203 | None:intergenic | 25.0% |
| ! | TTTGTAGTCAAAATTCATGA+AGG | + | chr1_2:65963214-65963233 | None:intergenic | 25.0% |
| ! | GAAGATCATAAAAGTAATAC+AGG | + | chr1_2:65963375-65963394 | None:intergenic | 25.0% |
| ! | TAAGATAAAATCAAATCCCT+TGG | + | chr1_2:65963488-65963507 | None:intergenic | 25.0% |
| ! | TAAATGATGTTCCAATAAAC+AGG | + | chr1_2:65963575-65963594 | None:intergenic | 25.0% |
| ! | TTGAATTAAGCATTACTCTT+TGG | - | chr1_2:65963823-65963842 | Msa0085700:intron | 25.0% |
| !! | TTTTACATTTGATTGATCTG+TGG | + | chr1_2:65964073-65964092 | None:intergenic | 25.0% |
| ! | TTAGAAGCAGTATTTAACAT+TGG | + | chr1_2:65964098-65964117 | None:intergenic | 25.0% |
| ! | CTATATGCTTGCATAATATT+GGG | + | chr1_2:65964704-65964723 | None:intergenic | 25.0% |
| ! | ACTATATGCTTGCATAATAT+TGG | + | chr1_2:65964705-65964724 | None:intergenic | 25.0% |
| ! | ACAGCATATACACAAATTAA+TGG | + | chr1_2:65964828-65964847 | None:intergenic | 25.0% |
| ! | ATACCTGTTATTATATGAGT+TGG | - | chr1_2:65964849-65964868 | Msa0085700:intron | 25.0% |
| ! | TCAGATGATGAATATGATAA+TGG | - | chr1_2:65964990-65965009 | Msa0085700:intron | 25.0% |
| !!! | CAAAATGAGTGAAGATTTTT+TGG | - | chr1_2:65965121-65965140 | Msa0085700:intron | 25.0% |
| !! | TTATACAACAAATTGATGAC+AGG | + | chr1_2:65965237-65965256 | None:intergenic | 25.0% |
| ! | ATGAACTAAATACTATGCTA+TGG | - | chr1_2:65965318-65965337 | Msa0085700:intron | 25.0% |
| !!! | TATTTTGTAAAGTATCACTG+TGG | - | chr1_2:65965368-65965387 | Msa0085700:five_prime_UTR | 25.0% |
| AAAGAAAGCAAAGTGAGATT+TGG | + | chr1_2:65960476-65960495 | None:intergenic | 30.0% | |
| CAAAAATATCCAAGAGATGT+CGG | + | chr1_2:65960764-65960783 | None:intergenic | 30.0% | |
| CTCTTAAAAGTAGCATTAGA+AGG | - | chr1_2:65961631-65961650 | Msa0085700:intron | 30.0% | |
| ! | GAAACTGATTTATTACTGTG+TGG | + | chr1_2:65961657-65961676 | None:intergenic | 30.0% |
| TCGATATCAGCTGTAATAAA+AGG | - | chr1_2:65961834-65961853 | Msa0085700:intron | 30.0% | |
| GTATAATAGTACGAAGAGAA+AGG | + | chr1_2:65961865-65961884 | None:intergenic | 30.0% | |
| !!! | CCCGATTTTATTTTATTGTC+AGG | - | chr1_2:65961910-65961929 | Msa0085700:intron | 30.0% |
| ! | TATTTTATTGTCAGGACACA+TGG | - | chr1_2:65961918-65961937 | Msa0085700:intron | 30.0% |
| ! | ATTTTATTGTCAGGACACAT+GGG | - | chr1_2:65961919-65961938 | Msa0085700:intron | 30.0% |
| !! | GGAGGGAGTATATTTTTAAA+AGG | + | chr1_2:65962005-65962024 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr1_2:65962026-65962045 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr1_2:65962027-65962046 | Msa0085700:intron | 30.0% |
| TGTAAAATTCCTTAGAGCTT+GGG | + | chr1_2:65962458-65962477 | None:intergenic | 30.0% | |
| ATGTAAAATTCCTTAGAGCT+TGG | + | chr1_2:65962459-65962478 | None:intergenic | 30.0% | |
| ! | TGGAATTTTATGATGAAGCA+AGG | - | chr1_2:65962691-65962710 | Msa0085700:intron | 30.0% |
| ! | AAGGCATCCTCTAATTATAA+AGG | + | chr1_2:65962937-65962956 | None:intergenic | 30.0% |
| AGAATAGGAACAATGATAGA+GGG | + | chr1_2:65962961-65962980 | None:intergenic | 30.0% | |
| TAGAATAGGAACAATGATAG+AGG | + | chr1_2:65962962-65962981 | None:intergenic | 30.0% | |
| AGAAACCGTTAATATTACAG+GGG | + | chr1_2:65963124-65963143 | None:intergenic | 30.0% | |
| CAGAAACCGTTAATATTACA+GGG | + | chr1_2:65963125-65963144 | None:intergenic | 30.0% | |
| GAATCTTCAAATTACAAGGT+TGG | + | chr1_2:65963180-65963199 | None:intergenic | 30.0% | |
| ! | TACAAAATTGATGATATGCC+AGG | - | chr1_2:65963228-65963247 | Msa0085700:intron | 30.0% |
| ! | ACAAAATTGATGATATGCCA+GGG | - | chr1_2:65963229-65963248 | Msa0085700:intron | 30.0% |
| !! | ACATCTTTAGGATAATCCAA+GGG | - | chr1_2:65963469-65963488 | Msa0085700:intron | 30.0% |
| CATGTTTATTACTACAGTCT+AGG | + | chr1_2:65963621-65963640 | None:intergenic | 30.0% | |
| ATACCATGTAGAAAGTAATG+GGG | + | chr1_2:65963654-65963673 | None:intergenic | 30.0% | |
| GATACCATGTAGAAAGTAAT+GGG | + | chr1_2:65963655-65963674 | None:intergenic | 30.0% | |
| TGATACCATGTAGAAAGTAA+TGG | + | chr1_2:65963656-65963675 | None:intergenic | 30.0% | |
| !!! | TTTTCAAGTTATATCCTCTC+AGG | + | chr1_2:65963752-65963771 | None:intergenic | 30.0% |
| TAATCTCTATGAACAAGGTA+TGG | + | chr1_2:65963904-65963923 | None:intergenic | 30.0% | |
| CTACTTAATCTCTATGAACA+AGG | + | chr1_2:65963909-65963928 | None:intergenic | 30.0% | |
| ! | TTTAAGATGTGGTATCAACA+TGG | + | chr1_2:65963992-65964011 | None:intergenic | 30.0% |
| GACATGCAGTTTATATGAAT+AGG | + | chr1_2:65964161-65964180 | None:intergenic | 30.0% | |
| TTATAGGACATGACATGATT+TGG | - | chr1_2:65964318-65964337 | Msa0085700:CDS | 30.0% | |
| !! | AAGTGGTTTTGCAAAAGAAT+TGG | - | chr1_2:65964433-65964452 | Msa0085700:exon | 30.0% |
| TTGCAAAAGAATTGGTTGTT+AGG | - | chr1_2:65964441-65964460 | Msa0085700:exon | 30.0% | |
| TGCAAAAGAATTGGTTGTTA+GGG | - | chr1_2:65964442-65964461 | Msa0085700:exon | 30.0% | |
| ! | AGTTTTCTTCCAGTTTCAAT+TGG | + | chr1_2:65964606-65964625 | None:intergenic | 30.0% |
| TGAAACTGGAAGAAAACTAT+AGG | - | chr1_2:65964608-65964627 | Msa0085700:intron | 30.0% | |
| CAACCAACTCATATAATAAC+AGG | + | chr1_2:65964855-65964874 | None:intergenic | 30.0% | |
| CACGAAAACAAACAATAACA+AGG | + | chr1_2:65964901-65964920 | None:intergenic | 30.0% | |
| !!! | CTTGTTATTGTTTGTTTTCG+TGG | - | chr1_2:65964899-65964918 | Msa0085700:intron | 30.0% |
| ATATAGAATCAATTACAGGC+AGG | + | chr1_2:65964932-65964951 | None:intergenic | 30.0% | |
| TTCAATTTACATTATCGCAC+AGG | + | chr1_2:65965033-65965052 | None:intergenic | 30.0% | |
| TGAAGTTTCATTAAGACGTT+AGG | - | chr1_2:65965049-65965068 | Msa0085700:intron | 30.0% | |
| GAAGTTTCATTAAGACGTTA+GGG | - | chr1_2:65965050-65965069 | Msa0085700:intron | 30.0% | |
| ATCTTTAACACAACATCACT+CGG | - | chr1_2:65965091-65965110 | Msa0085700:intron | 30.0% | |
| ATATATACACCAACATGTTG+CGG | - | chr1_2:65965154-65965173 | Msa0085700:intron | 30.0% | |
| ! | AACAAATTGATGACAGGTAT+AGG | + | chr1_2:65965231-65965250 | None:intergenic | 30.0% |
| !!! | AGACTAGGATTTCTTTTTTG+AGG | - | chr1_2:65965415-65965434 | Msa0085700:five_prime_UTR | 30.0% |
| GTGAAGAATGGTAGATTATG+CGG | + | chr1_2:65960320-65960339 | None:intergenic | 35.0% | |
| ! | AAAGTGAGATTTGGAAGTGT+CGG | + | chr1_2:65960467-65960486 | None:intergenic | 35.0% |
| AATTTGAACTTTGTCCCTTG+AGG | - | chr1_2:65960711-65960730 | Msa0085700:CDS | 35.0% | |
| ATTCGACCTTATAACCTCAA+GGG | + | chr1_2:65960728-65960747 | None:intergenic | 35.0% | |
| AATTCGACCTTATAACCTCA+AGG | + | chr1_2:65960729-65960748 | None:intergenic | 35.0% | |
| !! | GCATTTGTTGTTCTTCTAAG+AGG | - | chr1_2:65961192-65961211 | Msa0085700:intron | 35.0% |
| !! | TTTGTTGTTCTTCTAAGAGG+AGG | - | chr1_2:65961195-65961214 | Msa0085700:intron | 35.0% |
| ATAACATCAGTTCTGCTCAT+TGG | + | chr1_2:65961251-65961270 | None:intergenic | 35.0% | |
| ! | CTGATGTTATTTGCAGTAGA+AGG | - | chr1_2:65961261-65961280 | Msa0085700:intron | 35.0% |
| ! | ATGTTATTTGCAGTAGAAGG+TGG | - | chr1_2:65961264-65961283 | Msa0085700:intron | 35.0% |
| TGGTGAAACATCATGTTGTT+GGG | + | chr1_2:65961541-65961560 | None:intergenic | 35.0% | |
| AACAACATGATGTTTCACCA+GGG | - | chr1_2:65961541-65961560 | Msa0085700:intron | 35.0% | |
| TCCTTTCCATCATTAGAAAC+CGG | + | chr1_2:65961570-65961589 | None:intergenic | 35.0% | |
| GTGTATGAATGAGATATGCT+AGG | - | chr1_2:65961975-65961994 | Msa0085700:intron | 35.0% | |
| ATGAATGAGATATGCTAGGA+TGG | - | chr1_2:65961979-65961998 | Msa0085700:intron | 35.0% | |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr1_2:65962157-65962176 | Msa0085700:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr1_2:65962161-65962180 | Msa0085700:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr1_2:65962225-65962244 | Msa0085700:intron | 35.0% |
| TGCAGCGAATACAAAGATTT+GGG | + | chr1_2:65962316-65962335 | None:intergenic | 35.0% | |
| TTGCAGCGAATACAAAGATT+TGG | + | chr1_2:65962317-65962336 | None:intergenic | 35.0% | |
| !! | AACTTCTAGCATTTAGCTTG+AGG | - | chr1_2:65962351-65962370 | Msa0085700:intron | 35.0% |
| ! | GTTTTACTTCAGAGAGATGA+AGG | - | chr1_2:65962392-65962411 | Msa0085700:intron | 35.0% |
| TTCATTGGACCGATATCATT+TGG | + | chr1_2:65962493-65962512 | None:intergenic | 35.0% | |
| GATCTACAAGTTTAATGGTC+CGG | + | chr1_2:65962518-65962537 | None:intergenic | 35.0% | |
| ! | TTTTATGATGAAGCAAGGAG+TGG | - | chr1_2:65962696-65962715 | Msa0085700:intron | 35.0% |
| GATTAATGGCCATTGTAATC+TGG | - | chr1_2:65962831-65962850 | Msa0085700:intron | 35.0% | |
| TCCAAGAAACCAGATTACAA+TGG | + | chr1_2:65962843-65962862 | None:intergenic | 35.0% | |
| ! | TTGGAACTCGATTTTGAACT+AGG | - | chr1_2:65962858-65962877 | Msa0085700:intron | 35.0% |
| ! | AACTCGATTTTGAACTAGGA+AGG | - | chr1_2:65962862-65962881 | Msa0085700:intron | 35.0% |
| ! | TTTTCCTCCTTCTTCTTTCT+AGG | - | chr1_2:65963039-65963058 | Msa0085700:intron | 35.0% |
| TAGCATACCTAGAAAGAAGA+AGG | + | chr1_2:65963049-65963068 | None:intergenic | 35.0% | |
| AAACCGTTAATATTACAGGG+GGG | + | chr1_2:65963122-65963141 | None:intergenic | 35.0% | |
| GAAACCGTTAATATTACAGG+GGG | + | chr1_2:65963123-65963142 | None:intergenic | 35.0% | |
| CCAGAAACCGTTAATATTAC+AGG | + | chr1_2:65963126-65963145 | None:intergenic | 35.0% | |
| CCTGTAATATTAACGGTTTC+TGG | - | chr1_2:65963123-65963142 | Msa0085700:intron | 35.0% | |
| ! | CAAAATTGATGATATGCCAG+GGG | - | chr1_2:65963230-65963249 | Msa0085700:intron | 35.0% |
| ! | AAAATTGATGATATGCCAGG+GGG | - | chr1_2:65963231-65963250 | Msa0085700:intron | 35.0% |
| ! | GGAAATTTGCTCAGATTACA+GGG | - | chr1_2:65963259-65963278 | Msa0085700:intron | 35.0% |
| ! | GAAATTTGCTCAGATTACAG+GGG | - | chr1_2:65963260-65963279 | Msa0085700:intron | 35.0% |
| AGAAACAACCAACATGGATT+TGG | + | chr1_2:65963340-65963359 | None:intergenic | 35.0% | |
| CACTAAAGAAACAACCAACA+TGG | + | chr1_2:65963346-65963365 | None:intergenic | 35.0% | |
| TTTGTGTTTGTGTCGAGATT+TGG | - | chr1_2:65963412-65963431 | Msa0085700:intron | 35.0% | |
| TAACTCTTTGCCACATCTTT+AGG | - | chr1_2:65963457-65963476 | Msa0085700:intron | 35.0% | |
| CTTGGATTATCCTAAAGATG+TGG | + | chr1_2:65963470-65963489 | None:intergenic | 35.0% | |
| !! | CACATCTTTAGGATAATCCA+AGG | - | chr1_2:65963468-65963487 | Msa0085700:intron | 35.0% |
| ACATCAGTTGTCCTGTTTAT+TGG | - | chr1_2:65963561-65963580 | Msa0085700:intron | 35.0% | |
| TTTCCCCATTACTTTCTACA+TGG | - | chr1_2:65963648-65963667 | Msa0085700:intron | 35.0% | |
| TGGCTCAACAGATCTATATA+TGG | + | chr1_2:65963682-65963701 | None:intergenic | 35.0% | |
| CAAACCAGATTGTATTGTGA+GGG | + | chr1_2:65963797-65963816 | None:intergenic | 35.0% | |
| TTACTCTTTGGTTGATCTGT+AGG | - | chr1_2:65963835-65963854 | Msa0085700:intron | 35.0% | |
| CTTGTATATTGCCACTAGTT+TGG | - | chr1_2:65963861-65963880 | Msa0085700:intron | 35.0% | |
| TGCATTTCATACCAAACTAG+TGG | + | chr1_2:65963875-65963894 | None:intergenic | 35.0% | |
| !! | CAAATTTGCTGTAGTGTCAT+CGG | - | chr1_2:65963944-65963963 | Msa0085700:CDS | 35.0% |
| !!! | AGTACATGGGTTTTAAGATG+TGG | + | chr1_2:65964003-65964022 | None:intergenic | 35.0% |
| !! | CTTTTCTAAGAACTCTTCAG+CGG | - | chr1_2:65964033-65964052 | Msa0085700:CDS | 35.0% |
| AGTACAACTCTACAAGCATT+AGG | + | chr1_2:65964138-65964157 | None:intergenic | 35.0% | |
| ATCACCAATGTCAACGATAA+TGG | + | chr1_2:65964212-65964231 | None:intergenic | 35.0% | |
| ! | TTGTTATTCTGGACCTGAAA+TGG | - | chr1_2:65964294-65964313 | Msa0085700:CDS | 35.0% |
| CATGTCCTATAAACCATTTC+AGG | + | chr1_2:65964310-65964329 | None:intergenic | 35.0% | |
| TCTGTTGTTGCATATTGAAG+TGG | - | chr1_2:65964416-65964435 | Msa0085700:CDS | 35.0% | |
| !! | TTTTGCATGCTATGTTGACT+TGG | - | chr1_2:65964500-65964519 | Msa0085700:five_prime_UTR | 35.0% |
| !! | ATGCTATGTTGACTTGGAAA+AGG | - | chr1_2:65964506-65964525 | Msa0085700:intron | 35.0% |
| ! | TTGTTGCTTCTAGTTAAGTC+AGG | - | chr1_2:65964577-65964596 | Msa0085700:intron | 35.0% |
| ! | TGTTGCTTCTAGTTAAGTCA+GGG | - | chr1_2:65964578-65964597 | Msa0085700:intron | 35.0% |
| GAGTGATGTTGTGTTAAAGA+TGG | + | chr1_2:65965092-65965111 | None:intergenic | 35.0% | |
| !!! | GTGAAGATTTTTTGGTCCTT+TGG | - | chr1_2:65965129-65965148 | Msa0085700:intron | 35.0% |
| GTTGGTGTATATATCTCCAA+AGG | + | chr1_2:65965148-65965167 | None:intergenic | 35.0% | |
| TATATACACCAACATGTTGC+GGG | - | chr1_2:65965155-65965174 | Msa0085700:intron | 35.0% | |
| CTTAACACAAATTCGTCAAC+AGG | + | chr1_2:65965397-65965416 | None:intergenic | 35.0% | |
| GACGAATTTGTGTTAAGACT+AGG | - | chr1_2:65965400-65965419 | Msa0085700:five_prime_UTR | 35.0% | |
| !!! | TTTTGAGGTATATCTGTTGC+AGG | - | chr1_2:65965430-65965449 | Msa0085700:five_prime_UTR | 35.0% |
| GATCGAAGAAGAACAAGAAG+AGG | + | chr1_2:65960398-65960417 | None:intergenic | 40.0% | |
| CTTTGTCCCTTGAGGTTATA+AGG | - | chr1_2:65960719-65960738 | Msa0085700:intron | 40.0% | |
| TGTCCTTGTCTTAGCTTAGA+AGG | - | chr1_2:65960920-65960939 | Msa0085700:intron | 40.0% | |
| AAGCCTTCTAAGCTAAGACA+AGG | + | chr1_2:65960926-65960945 | None:intergenic | 40.0% | |
| ! | TTTGAAGAGTGCAAGTGCAT+AGG | - | chr1_2:65961063-65961082 | Msa0085700:intron | 40.0% |
| TTATTTGCAGTAGAAGGTGG+AGG | - | chr1_2:65961267-65961286 | Msa0085700:intron | 40.0% | |
| ACTCCATCACCTCTTAAAGT+CGG | - | chr1_2:65961510-65961529 | Msa0085700:intron | 40.0% | |
| GAAACATCATGTTGTTGGGT+TGG | + | chr1_2:65961537-65961556 | None:intergenic | 40.0% | |
| CTGGTGAAACATCATGTTGT+TGG | + | chr1_2:65961542-65961561 | None:intergenic | 40.0% | |
| CAACAACATGATGTTTCACC+AGG | - | chr1_2:65961540-65961559 | Msa0085700:intron | 40.0% | |
| ! | ACCGGTTTCTAATGATGGAA+AGG | - | chr1_2:65961566-65961585 | Msa0085700:intron | 40.0% |
| AAATACGAGAATTTGAGCCC+AGG | - | chr1_2:65961793-65961812 | Msa0085700:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1_2:65962265-65962284 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr1_2:65962160-65962179 | Msa0085700:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1_2:65962265-65962284 | Msa0085700:intron | 40.0% |
| TATAGCTTTCCCAAGCTCTA+AGG | - | chr1_2:65962446-65962465 | Msa0085700:intron | 40.0% | |
| TTTAATGGTCCGGCATTCAT+TGG | + | chr1_2:65962508-65962527 | None:intergenic | 40.0% | |
| TTTGTACACCTATGCGTAGA+AGG | + | chr1_2:65962553-65962572 | None:intergenic | 40.0% | |
| ! | GCCATTGTAATCTGGTTTCT+TGG | - | chr1_2:65962839-65962858 | Msa0085700:intron | 40.0% |
| CATACCTAGAAAGAAGAAGG+AGG | + | chr1_2:65963046-65963065 | None:intergenic | 40.0% | |
| TTGCCCCCCTGTAATATTAA+CGG | - | chr1_2:65963116-65963135 | Msa0085700:intron | 40.0% | |
| ! | CGGAAATTTGCTCAGATTAC+AGG | - | chr1_2:65963258-65963277 | Msa0085700:intron | 40.0% |
| GTTCTACACCAAATCCATGT+TGG | - | chr1_2:65963329-65963348 | Msa0085700:intron | 40.0% | |
| TGACCTGAGTGGTTTGATAA+CGG | + | chr1_2:65963706-65963725 | None:intergenic | 40.0% | |
| ACATTAGAGATGTCTAGTCC+TGG | - | chr1_2:65963725-65963744 | Msa0085700:intron | 40.0% | |
| CCAAACCAGATTGTATTGTG+AGG | + | chr1_2:65963798-65963817 | None:intergenic | 40.0% | |
| CCTCACAATACAATCTGGTT+TGG | - | chr1_2:65963795-65963814 | Msa0085700:intron | 40.0% | |
| AGCATTAGGCTGTAAAGCTT+CGG | + | chr1_2:65964124-65964143 | None:intergenic | 40.0% | |
| AGCACCATTATCGTTGACAT+TGG | - | chr1_2:65964205-65964224 | Msa0085700:CDS | 40.0% | |
| TCTGTCCAAAAAACTGGATG+TGG | - | chr1_2:65964236-65964255 | Msa0085700:CDS | 40.0% | |
| CTGTCCAAAAAACTGGATGT+GGG | - | chr1_2:65964237-65964256 | Msa0085700:CDS | 40.0% | |
| CCAGAATAACAAGTAAGCCA+AGG | + | chr1_2:65964286-65964305 | None:intergenic | 40.0% | |
| !! | CCTTGGCTTACTTGTTATTC+TGG | - | chr1_2:65964283-65964302 | Msa0085700:CDS | 40.0% |
| CTGGACCTGAAATGGTTTAT+AGG | - | chr1_2:65964302-65964321 | Msa0085700:CDS | 40.0% | |
| ! | ACATGACATGATTTGGAGAC+AGG | - | chr1_2:65964325-65964344 | Msa0085700:CDS | 40.0% |
| CTTGGAAAAGGTTGTTACTG+TGG | - | chr1_2:65964518-65964537 | Msa0085700:intron | 40.0% | |
| TCTGCCACATCAGCAAATTA+TGG | - | chr1_2:65964549-65964568 | Msa0085700:intron | 40.0% | |
| CAAACAAGCTAACTGCAGTA+CGG | + | chr1_2:65964770-65964789 | None:intergenic | 40.0% | |
| TAATGGTTGTCAACCTGTCA+GGG | + | chr1_2:65964811-65964830 | None:intergenic | 40.0% | |
| TTAATGGTTGTCAACCTGTC+AGG | + | chr1_2:65964812-65964831 | None:intergenic | 40.0% | |
| ATCTACTTCACTGCAGTTGA+AGG | + | chr1_2:65964967-65964986 | None:intergenic | 40.0% | |
| TTCAACTGCAGTGAAGTAGA+TGG | - | chr1_2:65964966-65964985 | Msa0085700:intron | 40.0% | |
| AAGACGTTAGGGTCATTCAT+CGG | - | chr1_2:65965061-65965080 | Msa0085700:intron | 40.0% | |
| AAGAGGCGAGTAAACAGTAC+CGG | + | chr1_2:65960381-65960400 | None:intergenic | 45.0% | |
| TCTTCGTTGCGATTTGTCGT+AGG | - | chr1_2:65960688-65960707 | Msa0085700:CDS | 45.0% | |
| TGGAGGATTCTTCTCTGCTT+CGG | - | chr1_2:65961284-65961303 | Msa0085700:intron | 45.0% | |
| TCCTTTGACCCAAAAGGAGT+AGG | + | chr1_2:65961335-65961354 | None:intergenic | 45.0% | |
| CCTCATTCCTTTGACCCAAA+AGG | + | chr1_2:65961341-65961360 | None:intergenic | 45.0% | |
| !! | CCTTTTGGGTCAAAGGAATG+AGG | - | chr1_2:65961338-65961357 | Msa0085700:intron | 45.0% |
| !! | ACCAACTGGTAATGGTTCCA+CGG | + | chr1_2:65961384-65961403 | None:intergenic | 45.0% |
| CTTGGTCTACCAACTGGTAA+TGG | + | chr1_2:65961392-65961411 | None:intergenic | 45.0% | |
| CAGATTCTTGGTCTACCAAC+TGG | + | chr1_2:65961398-65961417 | None:intergenic | 45.0% | |
| CTTCTTTCTGCTTGATCACC+AGG | + | chr1_2:65961732-65961751 | None:intergenic | 45.0% | |
| CTGGTGATCAAGCAGAAAGA+AGG | - | chr1_2:65961730-65961749 | Msa0085700:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1_2:65962264-65962283 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1_2:65962264-65962283 | Msa0085700:intron | 45.0% |
| GATATCGGTCCAATGAATGC+CGG | - | chr1_2:65962496-65962515 | Msa0085700:intron | 45.0% | |
| GCGTAGAAGGAGTTGGATTA+AGG | + | chr1_2:65962540-65962559 | None:intergenic | 45.0% | |
| ATCCAACTCCTTCTACGCAT+AGG | - | chr1_2:65962542-65962561 | Msa0085700:intron | 45.0% | |
| ! | AAAGCTTGAGGAGAGGCATA+TGG | + | chr1_2:65962733-65962752 | None:intergenic | 45.0% |
| ! | TATGCCTCTCCTCAAGCTTT+TGG | - | chr1_2:65962733-65962752 | Msa0085700:intron | 45.0% |
| ! | ATGCCTCTCCTCAAGCTTTT+GGG | - | chr1_2:65962734-65962753 | Msa0085700:intron | 45.0% |
| !! | AGCTTTTGGGTGTCTGTGAT+TGG | - | chr1_2:65962747-65962766 | Msa0085700:intron | 45.0% |
| !! | TTTTGGGTGTCTGTGATTGG+AGG | - | chr1_2:65962750-65962769 | Msa0085700:intron | 45.0% |
| AGGAACAATGATAGAGGGCA+AGG | + | chr1_2:65962956-65962975 | None:intergenic | 45.0% | |
| ATGATATGCCAGGGGGTAAA+CGG | - | chr1_2:65963238-65963257 | Msa0085700:intron | 45.0% | |
| ! | GACCTGAGTGGTTTGATAAC+GGG | + | chr1_2:65963705-65963724 | None:intergenic | 45.0% |
| CATCTCTAATGTGACCTGAG+TGG | + | chr1_2:65963717-65963736 | None:intergenic | 45.0% | |
| AGTTATATCCTCTCAGGACC+AGG | + | chr1_2:65963746-65963765 | None:intergenic | 45.0% | |
| GCATCCCTCACAATACAATC+TGG | - | chr1_2:65963790-65963809 | Msa0085700:intron | 45.0% | |
| TCATCGGCAGATTGAGTGTT+AGG | - | chr1_2:65963960-65963979 | Msa0085700:CDS | 45.0% | |
| ! | GTCAACGATAATGGTGCTGA+AGG | + | chr1_2:65964203-65964222 | None:intergenic | 45.0% |
| !!! | CCTTCCCACATCCAGTTTTT+TGG | + | chr1_2:65964244-65964263 | None:intergenic | 45.0% |
| CCAAAAAACTGGATGTGGGA+AGG | - | chr1_2:65964241-65964260 | Msa0085700:CDS | 45.0% | |
| TGCAGCTATGGTGTTTACCT+TGG | - | chr1_2:65964266-65964285 | Msa0085700:CDS | 45.0% | |
| ! | TGATTTGGAGACAGGCATGT+CGG | - | chr1_2:65964333-65964352 | Msa0085700:CDS | 45.0% |
| !! | GCTGCCATAATTTGCTGATG+TGG | + | chr1_2:65964556-65964575 | None:intergenic | 45.0% |
| GTCAGGGATCCAATTGAAAC+TGG | - | chr1_2:65964594-65964613 | Msa0085700:intron | 45.0% | |
| TTGTCAACCTGTCAGGGTAT+AGG | + | chr1_2:65964805-65964824 | None:intergenic | 45.0% | |
| AGACGTTAGGGTCATTCATC+GGG | - | chr1_2:65965062-65965081 | Msa0085700:intron | 45.0% | |
| ! | GTCTCTACTATTGCTTGCTG+CGG | - | chr1_2:65965191-65965210 | Msa0085700:intron | 45.0% |
| !!! | ATTATTATTATTTAGTTTTT+TGG | - | chr1_2:65960586-65960605 | Msa0085700:three_prime_UTR | 5.0% |
| !! | TTGTTTAATAAATATATATT+CGG | + | chr1_2:65964730-65964749 | None:intergenic | 5.0% |
| GAGTCGTCGGAGGAAAAACT+CGG | + | chr1_2:65960293-65960312 | None:intergenic | 50.0% | |
| ! | GTTTTTCCTCCGACGACTCA+CGG | - | chr1_2:65960294-65960313 | Msa0085700:three_prime_UTR | 50.0% |
| ! | GGAGAATCAGAAGCACAGGT+CGG | + | chr1_2:65960360-65960379 | None:intergenic | 50.0% |
| GACCTGTGCTTCTGATTCTC+CGG | - | chr1_2:65960359-65960378 | Msa0085700:three_prime_UTR | 50.0% | |
| ! | TACCGGAGAATCAGAAGCAC+AGG | + | chr1_2:65960364-65960383 | None:intergenic | 50.0% |
| ATCACTGAGCCGACATCTCT+TGG | - | chr1_2:65960752-65960771 | Msa0085700:intron | 50.0% | |
| TTCTTCTCTGCTTCGGCTTC+AGG | - | chr1_2:65961291-65961310 | Msa0085700:intron | 50.0% | |
| TCTTCTCTGCTTCGGCTTCA+GGG | - | chr1_2:65961292-65961311 | Msa0085700:intron | 50.0% | |
| TTCGGCTTCAGGGTATAGCA+AGG | - | chr1_2:65961302-65961321 | Msa0085700:intron | 50.0% | |
| TCGGCTTCAGGGTATAGCAA+GGG | - | chr1_2:65961303-65961322 | Msa0085700:intron | 50.0% | |
| !! | GCCTACTCCTTTTGGGTCAA+AGG | - | chr1_2:65961331-65961350 | Msa0085700:intron | 50.0% |
| TTCCACGGTGCAACTCTCAT+GGG | + | chr1_2:65961369-65961388 | None:intergenic | 50.0% | |
| ACCGTGGAACCATTACCAGT+TGG | - | chr1_2:65961380-65961399 | Msa0085700:intron | 50.0% | |
| GGAGTTGAGGGTCAGATTCT+TGG | + | chr1_2:65961410-65961429 | None:intergenic | 50.0% | |
| GATTCTTTGTGGAAGCCAGC+TGG | + | chr1_2:65961431-65961450 | None:intergenic | 50.0% | |
| ACAAAGAATCGCCTTTCCCG+CGG | - | chr1_2:65961441-65961460 | Msa0085700:CDS | 50.0% | |
| TGTGCCTCCTTTGTCTGCTT+TGG | - | chr1_2:65961465-65961484 | Msa0085700:CDS | 50.0% | |
| AGTGCGACCAAAGCAGACAA+AGG | + | chr1_2:65961475-65961494 | None:intergenic | 50.0% | |
| ! | TGATGGAGTATCATGCCCTG+CGG | + | chr1_2:65961499-65961518 | None:intergenic | 50.0% |
| ! | GGTCCGACTTTAAGAGGTGA+TGG | + | chr1_2:65961516-65961535 | None:intergenic | 50.0% |
| !! | TGGGTTGGTCCGACTTTAAG+AGG | + | chr1_2:65961522-65961541 | None:intergenic | 50.0% |
| TGATGTTTCACCAGGGCTAC+CGG | - | chr1_2:65961548-65961567 | Msa0085700:intron | 50.0% | |
| TCATTAGAAACCGGTAGCCC+TGG | + | chr1_2:65961561-65961580 | None:intergenic | 50.0% | |
| !! | GGGCTACCGGTTTCTAATGA+TGG | - | chr1_2:65961561-65961580 | Msa0085700:intron | 50.0% |
| ACCAATGAGCAAGACGCATC+AGG | - | chr1_2:65961687-65961706 | Msa0085700:intron | 50.0% | |
| ACCTGATGCGTCTTGCTCAT+TGG | + | chr1_2:65961691-65961710 | None:intergenic | 50.0% | |
| AATGAGCAAGACGCATCAGG+TGG | - | chr1_2:65961690-65961709 | Msa0085700:intron | 50.0% | |
| ! | GGACATGTCGTTTGTACTCC+TGG | - | chr1_2:65961711-65961730 | Msa0085700:intron | 50.0% |
| ! | CAGAAAGAAGGAGAGTGCAG+TGG | - | chr1_2:65961742-65961761 | Msa0085700:intron | 50.0% |
| CACCTATGCGTAGAAGGAGT+TGG | + | chr1_2:65962547-65962566 | None:intergenic | 50.0% | |
| ACACCCAAAAGCTTGAGGAG+AGG | + | chr1_2:65962740-65962759 | None:intergenic | 50.0% | |
| CACAGACACCCAAAAGCTTG+AGG | + | chr1_2:65962745-65962764 | None:intergenic | 50.0% | |
| GCAAATTTCCGTTTACCCCC+TGG | + | chr1_2:65963249-65963268 | None:intergenic | 50.0% | |
| !! | CTGAGTGGTTTGATAACGGG+TGG | + | chr1_2:65963702-65963721 | None:intergenic | 50.0% |
| CACCCGTTATCAAACCACTC+AGG | - | chr1_2:65963700-65963719 | Msa0085700:intron | 50.0% | |
| TGTGGGAAGGAATGCAGCTA+TGG | - | chr1_2:65964254-65964273 | Msa0085700:CDS | 50.0% | |
| GATTTGGAGACAGGCATGTC+GGG | - | chr1_2:65964334-65964353 | Msa0085700:CDS | 50.0% | |
| CTAGTGCACAATTTGAGCCG+TGG | - | chr1_2:65964364-65964383 | Msa0085700:CDS | 50.0% | |
| ! | TTAGGGATGACTAGCTGAGC+AGG | - | chr1_2:65964459-65964478 | Msa0085700:five_prime_UTR | 50.0% |
| ! | GATGACTAGCTGAGCAGGTT+TGG | - | chr1_2:65964464-65964483 | Msa0085700:five_prime_UTR | 50.0% |
| AACCTGTCCTATACCCTGAC+AGG | - | chr1_2:65964795-65964814 | Msa0085700:intron | 50.0% | |
| AACCTGTCAGGGTATAGGAC+AGG | + | chr1_2:65964800-65964819 | None:intergenic | 50.0% | |
| CAATCACTCCCGCAACATGT+TGG | + | chr1_2:65965166-65965185 | None:intergenic | 50.0% | |
| ATTATGCGGCCGTGAGTCGT+CGG | + | chr1_2:65960306-65960325 | None:intergenic | 55.0% | |
| CGTGGATCGACGGTGAAGAA+TGG | + | chr1_2:65960332-65960351 | None:intergenic | 55.0% | |
| ! | GAATCAGAAGCACAGGTCGG+CGG | + | chr1_2:65960357-65960376 | None:intergenic | 55.0% |
| ! | GGCCTGAGCCTACTCCTTTT+GGG | - | chr1_2:65961324-65961343 | Msa0085700:intron | 55.0% |
| GACCCAAAAGGAGTAGGCTC+AGG | + | chr1_2:65961329-65961348 | None:intergenic | 55.0% | |
| AACCCATGAGAGTTGCACCG+TGG | - | chr1_2:65961364-65961383 | Msa0085700:intron | 55.0% | |
| GTTCCACGGTGCAACTCTCA+TGG | + | chr1_2:65961370-65961389 | None:intergenic | 55.0% | |
| ATCTGACCCTCAACTCCAGC+TGG | - | chr1_2:65961413-65961432 | Msa0085700:CDS | 55.0% | |
| TGGAAGCCAGCTGGAGTTGA+GGG | + | chr1_2:65961422-65961441 | None:intergenic | 55.0% | |
| GCGGGAAAGGCGATTCTTTG+TGG | + | chr1_2:65961442-65961461 | None:intergenic | 55.0% | |
| CAAAGAATCGCCTTTCCCGC+GGG | - | chr1_2:65961442-65961461 | Msa0085700:CDS | 55.0% | |
| GCGACCAAAGCAGACAAAGG+AGG | + | chr1_2:65961472-65961491 | None:intergenic | 55.0% | |
| GTGCAGTGGACAGATGCTTG+CGG | - | chr1_2:65961756-65961775 | Msa0085700:intron | 55.0% | |
| TGAAGCAAGGAGTGGCGCTT+CGG | - | chr1_2:65962704-65962723 | Msa0085700:intron | 55.0% | |
| TGTCTAGTCCTGGTCCTGAG+AGG | - | chr1_2:65963735-65963754 | Msa0085700:intron | 55.0% | |
| AGGCAGCAAATCAGCACTGC+AGG | + | chr1_2:65964183-65964202 | None:intergenic | 55.0% | |
| CCAAGTCCAACCATGCCTCA+CGG | + | chr1_2:65964390-65964409 | None:intergenic | 55.0% | |
| TGAGGCATGGTTGGACTTGG+AGG | - | chr1_2:65964390-65964409 | Msa0085700:CDS | 55.0% | |
| GAGGCATGGTTGGACTTGGA+GGG | - | chr1_2:65964391-65964410 | Msa0085700:CDS | 55.0% | |
| AGGCATGGTTGGACTTGGAG+GGG | - | chr1_2:65964392-65964411 | Msa0085700:CDS | 55.0% | |
| ! | GGGCCTGAGCCTACTCCTTT+TGG | - | chr1_2:65961323-65961342 | Msa0085700:intron | 60.0% |
| GTGGAAGCCAGCTGGAGTTG+AGG | + | chr1_2:65961423-65961442 | None:intergenic | 60.0% | |
| ! | AGACAAAGGAGGCACACCCG+CGG | + | chr1_2:65961461-65961480 | None:intergenic | 60.0% |
| TGCTTTGGTCGCACTTCCGC+AGG | - | chr1_2:65961480-65961499 | Msa0085700:CDS | 60.0% | |
| GCTTTGGTCGCACTTCCGCA+GGG | - | chr1_2:65961481-65961500 | Msa0085700:CDS | 60.0% | |
| CAATTTGAGCCGTGGCCGTG+AGG | - | chr1_2:65964372-65964391 | Msa0085700:CDS | 60.0% | |
| CCGTGAGGCATGGTTGGACT+TGG | - | chr1_2:65964387-65964406 | Msa0085700:CDS | 60.0% | |
| ! | GACAAAGGAGGCACACCCGC+GGG | + | chr1_2:65961460-65961479 | None:intergenic | 65.0% |
| CCAACCATGCCTCACGGCCA+CGG | + | chr1_2:65964384-65964403 | None:intergenic | 65.0% | |
| ATGCGGCCGTGAGTCGTCGG+AGG | + | chr1_2:65960303-65960322 | None:intergenic | 70.0% | |
| ! | AGGAGGCACACCCGCGGGAA+AGG | + | chr1_2:65961455-65961474 | None:intergenic | 70.0% |
| TGAGCCGTGGCCGTGAGGCA+TGG | - | chr1_2:65964377-65964396 | Msa0085700:CDS | 70.0% | |
| CCGTGGCCGTGAGGCATGGT+TGG | - | chr1_2:65964381-65964400 | Msa0085700:CDS | 70.0% | |
| GTCGGCGGCGCGTGGATCGA+CGG | + | chr1_2:65960342-65960361 | None:intergenic | 75.0% | |
| AAGCACAGGTCGGCGGCGCG+TGG | + | chr1_2:65960350-65960369 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 65960232 | 65965475 | 65960232 | ID=Msa0085700;Name=Msa0085700 |
| chr1_2 | mRNA | 65960232 | 65965475 | 65960232 | ID=Msa0085700-mRNA-1;Parent=Msa0085700;Name=Msa0085700-mRNA-1;_AED=0.12;_eAED=0.12;_QI=227|0.5|0.8|0.8|0|0|5|429|270 |
| chr1_2 | exon | 65960232 | 65960730 | 65960232 | ID=Msa0085700-mRNA-1:exon:22302;Parent=Msa0085700-mRNA-1 |
| chr1_2 | exon | 65961392 | 65961520 | 65961392 | ID=Msa0085700-mRNA-1:exon:22301;Parent=Msa0085700-mRNA-1 |
| chr1_2 | exon | 65962936 | 65962998 | 65962936 | ID=Msa0085700-mRNA-1:exon:22300;Parent=Msa0085700-mRNA-1 |
| chr1_2 | exon | 65963893 | 65964521 | 65963893 | ID=Msa0085700-mRNA-1:exon:22299;Parent=Msa0085700-mRNA-1 |
| chr1_2 | exon | 65965327 | 65965475 | 65965327 | ID=Msa0085700-mRNA-1:exon:22298;Parent=Msa0085700-mRNA-1 |
| chr1_2 | five_prime_UTR | 65965327 | 65965475 | 65965327 | ID=Msa0085700-mRNA-1:five_prime_utr;Parent=Msa0085700-mRNA-1 |
| chr1_2 | five_prime_UTR | 65964444 | 65964521 | 65964444 | ID=Msa0085700-mRNA-1:five_prime_utr;Parent=Msa0085700-mRNA-1 |
| chr1_2 | CDS | 65963893 | 65964443 | 65963893 | ID=Msa0085700-mRNA-1:cds;Parent=Msa0085700-mRNA-1 |
| chr1_2 | CDS | 65962936 | 65962998 | 65962936 | ID=Msa0085700-mRNA-1:cds;Parent=Msa0085700-mRNA-1 |
| chr1_2 | CDS | 65961392 | 65961520 | 65961392 | ID=Msa0085700-mRNA-1:cds;Parent=Msa0085700-mRNA-1 |
| chr1_2 | CDS | 65960661 | 65960730 | 65960661 | ID=Msa0085700-mRNA-1:cds;Parent=Msa0085700-mRNA-1 |
| chr1_2 | three_prime_UTR | 65960232 | 65960660 | 65960232 | ID=Msa0085700-mRNA-1:three_prime_utr;Parent=Msa0085700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
