AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0877710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0877710 MtrunA17_Chr6g0460211 100.000 149 0 0 1 149 1 149 1.74e-106 300
Msa0877710 MtrunA17_Chr3g0093271 99.329 149 1 0 1 149 52 200 4.50e-106 300
Msa0877710 MtrunA17_Chr5g0440931 99.329 149 1 0 1 149 1 149 6.63e-106 298
Msa0877710 MtrunA17_Chr7g0254731 98.658 149 2 0 1 149 1 149 1.79e-104 295
Msa0877710 MtrunA17_Chr1g0166281 78.378 148 32 0 1 148 1 148 2.67e-83 241
Msa0877710 MtrunA17_Chr1g0166281 47.692 65 34 0 85 149 12 76 4.12e-12 60.1
Msa0877710 MtrunA17_Chr1g0188171 77.703 148 33 0 1 148 1 148 4.41e-83 241
Msa0877710 MtrunA17_Chr1g0188171 45.070 71 36 1 82 149 6 76 2.21e-11 58.2
Msa0877710 MtrunA17_Chr7g0274101 62.838 148 55 0 1 148 1 148 1.75e-57 176
Msa0877710 MtrunA17_Chr1g0185001 58.503 147 60 1 1 147 1 146 3.46e-57 175
Msa0877710 MtrunA17_Chr1g0185001 40.260 77 45 1 73 149 1 76 5.04e-12 59.7
Msa0877710 MtrunA17_Chr5g0398751 51.007 149 71 1 1 149 1 147 3.68e-49 154
Msa0877710 MtrunA17_Chr3g0100541 53.425 146 53 1 1 146 41 171 2.27e-43 141
Msa0877710 MtrunA17_Chr8g0366401 45.946 148 77 1 4 148 9 156 2.65e-43 140
Msa0877710 MtrunA17_Chr7g0245231 45.455 143 78 0 4 146 22 164 3.76e-39 130
Msa0877710 MtrunA17_Chr7g0245231 46.970 66 35 0 84 149 29 94 2.47e-12 61.2
Msa0877710 MtrunA17_Chr1g0161211 47.945 146 72 1 4 149 42 183 2.99e-37 126
Msa0877710 MtrunA17_Chr6g0450921 44.056 143 80 0 4 146 21 163 3.15e-37 125
Msa0877710 MtrunA17_Chr6g0450921 43.421 76 43 0 74 149 18 93 1.60e-12 61.6
Msa0877710 MtrunA17_Chr3g0100511 46.897 145 62 1 1 145 41 170 1.06e-36 124
Msa0877710 MtrunA17_Chr4g0062221 43.262 141 78 1 8 146 7 147 1.30e-36 123
Msa0877710 MtrunA17_Chr4g0062221 46.875 64 34 0 16 79 90 153 1.09e-12 62.0
Msa0877710 MtrunA17_Chr3g0100561 46.207 145 63 1 1 145 41 170 1.47e-34 118
Msa0877710 MtrunA17_Chr8g0368681 42.657 143 80 1 6 146 6 148 2.04e-34 117
Msa0877710 MtrunA17_Chr8g0368681 39.706 68 41 0 12 79 87 154 7.87e-11 57.0
Msa0877710 MtrunA17_Chr8g0391691 48.855 131 67 0 12 142 36 166 7.15e-34 117
Msa0877710 MtrunA17_Chr8g0391691 54.688 64 29 0 6 69 103 166 3.56e-16 71.6
Msa0877710 MtrunA17_Chr4g0033601 44.928 138 74 1 11 146 4 141 6.08e-33 114
Msa0877710 MtrunA17_Chr4g0033601 44.118 68 36 1 8 73 74 141 6.99e-11 57.0
Msa0877710 MtrunA17_Chr8g0392951 44.444 135 74 1 12 146 24 157 7.92e-32 111
Msa0877710 MtrunA17_Chr8g0392951 43.284 67 38 0 7 73 91 157 2.13e-12 61.2
Msa0877710 MtrunA17_Chr3g0100471 68.000 75 24 0 1 75 41 115 3.31e-31 108
Msa0877710 MtrunA17_Chr5g0434951 42.963 135 76 1 12 146 4 137 8.86e-31 107
Msa0877710 MtrunA17_Chr5g0434951 39.706 68 41 0 8 75 72 139 2.93e-11 57.8
Msa0877710 MtrunA17_Chr3g0111371 42.963 135 73 1 12 146 5 135 1.24e-28 102
Msa0877710 MtrunA17_Chr3g0111371 43.750 64 36 0 12 75 74 137 5.15e-13 62.4
Msa0877710 MtrunA17_Chr1g0169581 39.416 137 81 1 12 146 4 140 2.94e-28 101
Msa0877710 MtrunA17_Chr1g0169581 43.750 64 36 0 12 75 79 142 2.56e-12 60.5
Msa0877710 MtrunA17_Chr6g0482731 40.288 139 81 2 12 149 26 163 3.16e-27 100
Msa0877710 MtrunA17_Chr6g0482731 43.836 73 41 0 6 78 93 165 5.37e-13 63.2
Msa0877710 MtrunA17_Chr5g0444171 40.268 149 85 3 1 148 386 531 6.81e-27 104
Msa0877710 MtrunA17_Chr7g0267751 41.096 146 83 2 1 146 429 571 7.26e-27 104
Msa0877710 MtrunA17_Chr7g0256171 44.286 140 76 1 11 148 4 143 9.20e-27 98.2
Msa0877710 MtrunA17_Chr7g0245911 40.000 145 78 3 11 146 46 190 1.85e-26 98.6
Msa0877710 MtrunA17_Chr7g0256701 40.816 147 82 3 5 146 66 212 2.43e-26 99.0
Msa0877710 MtrunA17_Chr4g0074811 39.456 147 85 3 1 146 385 528 2.73e-26 103
Msa0877710 MtrunA17_Chr8g0351681 39.189 148 82 3 7 146 44 191 1.22e-25 96.7
Msa0877710 MtrunA17_Chr1g0200601 39.865 148 82 3 1 146 324 466 1.58e-25 100
Msa0877710 MtrunA17_Chr8g0385341 38.356 146 87 2 1 146 324 466 1.76e-25 100
Msa0877710 MtrunA17_Chr1g0157131 37.162 148 87 3 1 146 368 511 2.42e-25 100
Msa0877710 MtrunA17_Chr4g0064231 40.523 153 73 2 12 146 64 216 2.79e-25 96.3
Msa0877710 MtrunA17_Chr4g0059951 37.838 148 87 4 1 146 367 511 3.21e-25 100
Msa0877710 MtrunA17_Chr1g0176751 37.671 146 88 2 1 146 418 560 3.30e-25 100
Msa0877710 MtrunA17_Chr3g0131181 36.986 146 89 2 1 146 323 465 5.22e-25 99.4
Msa0877710 MtrunA17_Chr5g0397101 38.514 148 85 3 1 146 360 503 6.22e-25 99.4
Msa0877710 MtrunA17_Chr3g0098951 37.662 154 89 2 1 148 377 529 1.35e-24 98.2
Msa0877710 MtrunA17_Chr8g0387671 37.162 148 87 3 1 146 360 503 1.35e-23 95.5
Msa0877710 MtrunA17_Chr1g0169621 33.537 164 82 2 12 148 4 167 4.17e-23 89.4
Msa0877710 MtrunA17_Chr5g0448721 35.616 146 91 2 1 146 390 532 7.02e-23 93.6
Msa0877710 MtrunA17_Chr7g0242561 35.616 146 93 1 1 146 350 494 7.48e-23 93.2
Msa0877710 MtrunA17_Chr1g0170281 34.932 146 92 2 1 146 412 554 1.40e-22 92.8
Msa0877710 MtrunA17_Chr0c02g0489761 36.986 146 90 2 1 146 372 515 3.66e-22 91.3
Msa0877710 MtrunA17_Chr7g0225921 33.333 141 91 3 8 147 2 140 3.90e-22 85.9
Msa0877710 MtrunA17_Chr7g0225921 40.299 67 40 0 7 73 74 140 4.36e-11 57.4
Msa0877710 MtrunA17_Chr2g0329371 41.429 140 78 2 11 146 63 202 6.54e-22 87.0
Msa0877710 MtrunA17_Chr4g0044961 35.766 137 86 1 10 146 55 189 1.22e-21 86.3
Msa0877710 MtrunA17_Chr5g0441691 36.054 147 90 3 1 146 362 505 1.59e-21 89.7
Msa0877710 MtrunA17_Chr4g0057651 35.714 140 80 3 12 147 6 139 1.60e-21 84.3
Msa0877710 MtrunA17_Chr3g0100501 38.194 144 36 2 1 144 41 131 1.92e-21 84.0
Msa0877710 MtrunA17_Chr3g0116151 32.374 139 83 2 13 146 7 139 2.43e-21 84.0
Msa0877710 MtrunA17_Chr3g0116141 32.374 139 83 2 13 146 6 138 2.55e-21 84.0
Msa0877710 MtrunA17_Chr5g0409441 32.847 137 92 0 6 142 16 152 6.04e-21 83.6
Msa0877710 MtrunA17_Chr4g0033371 34.694 147 93 3 1 147 366 509 6.81e-21 87.8
Msa0877710 MtrunA17_Chr3g0100461 64.815 54 19 0 93 146 53 106 1.07e-20 81.6
Msa0877710 MtrunA17_Chr3g0100461 42.667 75 36 1 1 75 41 108 2.59e-13 62.4
Msa0877710 MtrunA17_Chr4g0057661 34.286 140 82 3 12 147 6 139 4.95e-20 80.5
Msa0877710 MtrunA17_Chr1g0173541 31.081 148 101 1 1 148 346 492 5.62e-20 85.1
Msa0877710 MtrunA17_Chr4g0057641 34.286 140 82 3 12 147 6 139 6.61e-20 80.1
Msa0877710 MtrunA17_Chr7g0257751 31.081 148 101 1 1 148 352 498 1.63e-19 84.0
Msa0877710 MtrunA17_Chr6g0459231 28.571 140 99 1 8 147 4 142 3.09e-19 78.6
Msa0877710 MtrunA17_Chr5g0402361 36.029 136 86 1 12 147 48 182 1.30e-18 80.9
Msa0877710 MtrunA17_Chr5g0402361 35.000 140 83 3 12 147 220 355 1.10e-16 75.5
Msa0877710 MtrunA17_Chr5g0402361 28.834 163 88 3 12 146 120 282 4.34e-14 68.2
Msa0877710 MtrunA17_Chr4g0074791 33.333 147 83 5 1 146 390 522 2.14e-18 80.5
Msa0877710 MtrunA17_Chr5g0402331 35.000 140 83 3 12 147 48 183 9.93e-18 75.9
Msa0877710 MtrunA17_Chr8g0373691 32.593 135 89 2 13 146 54 187 1.44e-17 75.5
Msa0877710 MtrunA17_Chr1g0176421 32.374 139 91 2 1 139 455 590 3.90e-17 77.0
Msa0877710 MtrunA17_Chr7g0245371 32.192 146 87 2 13 146 25 170 3.11e-16 71.6
Msa0877710 MtrunA17_Chr5g0396261 33.036 112 73 1 36 145 1 112 4.86e-15 67.0
Msa0877710 MtrunA17_Chr3g0121191 47.059 68 36 0 6 73 150 217 2.53e-14 67.4
Msa0877710 MtrunA17_Chr3g0121191 32.847 137 82 1 11 147 92 218 7.86e-14 66.2
Msa0877710 MtrunA17_Chr5g0405421 27.632 152 98 4 1 146 395 540 7.44e-14 67.8
Msa0877710 MtrunA17_Chr7g0252401 29.861 144 92 4 1 142 23 159 5.26e-12 62.4
Msa0877710 MtrunA17_Chr4g0042491 44.595 74 41 0 73 146 102 175 6.95e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0877710 AT3G43810.2 100.000 148 0 0 1 148 1 148 1.28e-106 303
Msa0877710 AT3G43810.2 45.455 77 41 1 73 149 1 76 4.87e-13 64.3
Msa0877710 AT3G43810.1 100.000 149 0 0 1 149 1 149 2.40e-106 300
Msa0877710 AT2G27030.3 99.329 149 1 0 1 149 1 149 4.05e-106 300
Msa0877710 AT2G27030.3 44.304 79 43 1 1 78 73 151 1.81e-13 64.7
Msa0877710 AT5G21274.1 99.329 149 1 0 1 149 1 149 7.60e-106 298
Msa0877710 AT3G56800.1 99.329 149 1 0 1 149 1 149 9.06e-106 298
Msa0877710 AT2G41110.1 99.329 149 1 0 1 149 1 149 9.06e-106 298
Msa0877710 AT2G27030.1 99.329 149 1 0 1 149 1 149 9.06e-106 298
Msa0877710 AT1G66410.1 97.315 149 4 0 1 149 1 149 2.46e-104 295
Msa0877710 AT5G37780.1 97.315 149 4 0 1 149 1 149 2.46e-104 295
Msa0877710 AT2G41110.2 91.925 161 1 1 1 149 1 161 7.30e-102 289
Msa0877710 AT1G66410.2 91.195 159 4 1 1 149 1 159 5.13e-101 286
Msa0877710 AT5G37780.2 88.415 164 4 1 1 149 1 164 4.69e-100 284
Msa0877710 AT5G37780.3 82.857 175 4 1 1 149 1 175 3.62e-98 280
Msa0877710 AT5G37780.4 97.581 124 3 0 26 149 13 136 7.11e-86 247
Msa0877710 AT5G37780.4 45.455 77 41 1 1 76 60 136 6.60e-14 64.7
Msa0877710 AT3G22930.1 76.389 144 34 0 4 147 27 170 5.23e-80 234
Msa0877710 AT4G14640.1 74.825 143 36 0 5 147 6 148 3.64e-79 231
Msa0877710 AT3G43810.4 100.000 113 0 0 37 149 1 113 1.24e-78 228
Msa0877710 AT3G43810.4 45.455 77 41 1 1 76 37 113 6.11e-14 64.3
Msa0877710 AT3G43810.3 100.000 113 0 0 37 149 1 113 1.24e-78 228
Msa0877710 AT3G43810.3 45.455 77 41 1 1 76 37 113 6.11e-14 64.3
Msa0877710 AT1G66410.4 97.345 113 3 0 37 149 1 113 3.43e-77 224
Msa0877710 AT1G66410.4 45.455 77 41 1 1 76 37 113 1.52e-14 65.9
Msa0877710 AT1G66410.3 97.345 113 3 0 37 149 1 113 3.43e-77 224
Msa0877710 AT1G66410.3 45.455 77 41 1 1 76 37 113 1.52e-14 65.9
Msa0877710 AT4G14640.2 72.951 122 33 0 26 147 9 130 1.27e-65 196
Msa0877710 AT4G14640.2 46.774 62 33 0 12 73 68 129 4.27e-13 62.8
Msa0877710 AT2G41090.1 64.430 149 50 1 1 149 1 146 5.74e-61 186
Msa0877710 AT2G41100.7 57.229 166 54 2 1 149 55 220 1.61e-54 173
Msa0877710 AT2G41100.7 62.766 94 32 1 4 97 148 238 6.06e-31 112
Msa0877710 AT2G41100.7 45.669 127 53 2 36 146 1 127 1.72e-29 108
Msa0877710 AT2G41100.6 57.229 166 54 2 1 149 55 220 1.61e-54 173
Msa0877710 AT2G41100.6 62.766 94 32 1 4 97 148 238 6.06e-31 112
Msa0877710 AT2G41100.6 45.669 127 53 2 36 146 1 127 1.72e-29 108
Msa0877710 AT2G41100.3 57.229 166 54 2 1 149 55 220 1.61e-54 173
Msa0877710 AT2G41100.3 62.766 94 32 1 4 97 148 238 6.06e-31 112
Msa0877710 AT2G41100.3 45.669 127 53 2 36 146 1 127 1.72e-29 108
Msa0877710 AT2G41100.4 57.229 166 54 2 1 149 90 255 4.23e-54 173
Msa0877710 AT2G41100.4 51.852 162 62 2 1 146 1 162 4.91e-50 163
Msa0877710 AT2G41100.4 62.766 94 32 1 4 97 183 273 1.22e-30 112
Msa0877710 AT2G41100.1 57.229 166 54 2 1 149 90 255 4.23e-54 173
Msa0877710 AT2G41100.1 51.852 162 62 2 1 146 1 162 4.91e-50 163
Msa0877710 AT2G41100.1 62.766 94 32 1 4 97 183 273 1.22e-30 112
Msa0877710 AT4G14640.3 73.786 103 27 0 5 107 6 108 7.13e-54 166
Msa0877710 AT3G22930.2 73.786 103 27 0 4 106 27 129 3.58e-52 162
Msa0877710 AT3G22930.2 46.774 62 33 0 85 146 35 96 3.45e-11 57.8
Msa0877710 AT1G12310.1 49.660 147 72 1 3 149 4 148 4.52e-47 150
Msa0877710 AT1G62820.1 48.980 147 73 1 3 149 4 148 8.99e-47 149
Msa0877710 AT3G51920.1 50.676 148 73 0 1 148 1 148 2.34e-46 148
Msa0877710 AT1G32250.1 42.763 152 81 1 1 146 5 156 9.72e-41 134
Msa0877710 AT3G50360.1 47.183 142 75 0 5 146 20 161 9.16e-40 132
Msa0877710 AT3G50360.1 45.714 70 38 0 80 149 22 91 4.50e-13 63.5
Msa0877710 AT4G37010.2 43.662 142 80 0 5 146 24 165 1.36e-35 121
Msa0877710 AT4G37010.1 43.662 142 80 0 5 146 20 161 1.76e-35 121
Msa0877710 AT2G41100.2 53.077 130 44 2 37 149 1 130 4.19e-35 121
Msa0877710 AT2G41100.2 62.766 94 32 1 4 97 58 148 4.48e-32 113
Msa0877710 AT2G41100.5 61.856 97 34 1 1 97 1 94 5.39e-35 119
Msa0877710 AT2G41100.5 50.649 77 37 1 73 149 1 76 1.53e-17 74.7
Msa0877710 AT1G18530.1 42.069 145 76 2 7 146 2 143 7.79e-34 116
Msa0877710 AT1G18530.1 42.647 68 39 0 12 79 82 149 1.56e-11 59.3
Msa0877710 AT1G24620.1 46.763 139 73 1 9 147 34 171 2.32e-33 116
Msa0877710 AT1G24620.1 49.254 67 34 0 7 73 105 171 1.85e-13 64.7
Msa0877710 AT3G25600.1 41.060 151 81 2 1 146 1 148 9.71e-33 114
Msa0877710 AT3G25600.1 41.176 68 40 0 12 79 87 154 2.18e-11 58.9
Msa0877710 AT3G03000.1 43.836 146 81 1 4 148 12 157 3.14e-32 112
Msa0877710 AT1G18210.2 42.222 135 74 1 12 146 23 153 4.26e-31 110
Msa0877710 AT1G18210.1 42.222 135 74 1 12 146 23 153 4.26e-31 110
Msa0877710 AT1G05990.1 44.604 139 74 2 11 146 4 142 4.42e-31 109
Msa0877710 AT1G66400.1 43.478 138 76 1 12 147 15 152 6.18e-31 109
Msa0877710 AT5G37770.1 42.446 139 76 1 12 146 17 155 8.53e-30 106
Msa0877710 AT5G37770.1 44.615 65 36 0 10 74 92 156 1.41e-13 64.7
Msa0877710 AT5G37770.2 42.446 139 76 1 12 146 17 155 8.53e-30 106
Msa0877710 AT5G37770.2 44.615 65 36 0 10 74 92 156 1.41e-13 64.7
Msa0877710 AT1G73630.1 40.146 137 78 1 12 148 20 152 2.05e-29 105
Msa0877710 AT4G03290.1 45.390 141 72 2 11 146 4 144 2.48e-29 105
Msa0877710 AT4G03290.1 46.875 64 32 1 14 75 83 146 1.96e-11 58.9
Msa0877710 AT2G43290.1 42.657 143 75 3 11 146 64 206 2.51e-29 106
Msa0877710 AT1G76040.1 41.096 146 84 2 1 146 167 310 4.78e-29 108
Msa0877710 AT1G76040.4 41.096 146 84 2 1 146 167 310 4.78e-29 108
Msa0877710 AT1G76040.2 41.096 146 84 2 1 146 405 548 6.41e-28 108
Msa0877710 AT3G59440.1 42.336 137 76 2 12 146 51 186 3.81e-27 100
Msa0877710 AT2G15680.1 37.324 142 87 1 5 146 43 182 1.28e-26 99.0
Msa0877710 AT5G23580.1 39.726 146 85 2 1 146 316 458 1.72e-26 103
Msa0877710 AT4G21940.1 39.597 149 86 3 1 148 395 540 6.80e-26 102
Msa0877710 AT4G21940.2 39.597 149 86 3 1 148 395 540 8.49e-26 102
Msa0877710 AT4G12860.1 40.580 138 80 1 11 146 4 141 3.08e-25 94.7
Msa0877710 AT4G23650.1 38.514 148 85 3 1 146 372 515 3.74e-25 100
Msa0877710 AT4G23650.1 43.478 69 36 1 82 147 377 445 5.13e-11 59.7
Msa0877710 AT1G35670.1 37.671 146 88 2 1 146 320 462 4.56e-25 99.8
Msa0877710 AT4G09570.1 38.514 148 84 3 1 146 319 461 6.67e-25 99.4
Msa0877710 AT3G07490.1 41.304 138 79 1 11 146 4 141 7.27e-25 93.6
Msa0877710 AT4G04720.2 38.255 149 88 3 1 148 373 518 1.42e-24 98.6
Msa0877710 AT4G04720.1 38.255 149 88 3 1 148 373 518 1.42e-24 98.6
Msa0877710 AT3G10660.2 36.301 146 90 2 1 146 480 622 2.11e-24 98.2
Msa0877710 AT3G10660.1 36.301 146 90 2 1 146 480 622 2.11e-24 98.2
Msa0877710 AT4G38230.1 36.986 146 89 2 1 146 174 316 2.27e-24 96.7
Msa0877710 AT5G19360.1 40.136 147 84 3 1 146 362 505 2.66e-24 97.8
Msa0877710 AT4G38230.4 36.986 146 89 2 1 146 318 460 6.40e-24 96.7
Msa0877710 AT4G38230.3 36.986 146 89 2 1 146 318 460 6.40e-24 96.7
Msa0877710 AT4G38230.2 36.986 146 89 2 1 146 348 490 6.53e-24 96.7
Msa0877710 AT1G61950.1 38.514 148 85 3 1 146 393 536 6.68e-24 96.7
Msa0877710 AT3G10190.1 40.146 137 79 3 12 146 70 205 7.08e-24 92.4
Msa0877710 AT5G12180.1 39.456 147 85 3 1 146 367 510 1.15e-23 95.9
Msa0877710 AT5G04870.1 35.616 146 91 2 1 146 444 586 2.22e-23 95.5
Msa0877710 AT1G74740.1 35.570 149 93 3 1 148 353 499 4.29e-23 94.4
Msa0877710 AT3G20410.2 36.301 146 91 2 1 146 385 528 1.02e-22 93.2
Msa0877710 AT3G20410.1 36.301 146 91 2 1 146 385 528 1.02e-22 93.2
Msa0877710 AT2G17290.1 35.616 146 91 2 1 146 379 521 1.56e-22 92.8
Msa0877710 AT2G17290.2 35.616 146 91 2 1 146 379 521 1.56e-22 92.8
Msa0877710 AT3G50770.1 36.429 140 84 2 12 146 64 203 2.10e-22 88.6
Msa0877710 AT3G50770.1 44.118 68 38 0 82 149 61 128 8.40e-13 63.5
Msa0877710 AT4G04740.4 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0877710 AT4G04740.6 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0877710 AT4G04740.5 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0877710 AT4G04740.3 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0877710 AT4G04740.1 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0877710 AT4G04740.7 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0877710 AT2G38910.1 34.932 146 92 2 1 146 428 570 4.60e-22 91.7
Msa0877710 AT4G04695.1 36.242 149 91 3 1 148 325 470 4.69e-22 91.3
Msa0877710 AT4G35310.2 34.932 146 92 2 1 146 391 533 4.90e-22 91.7
Msa0877710 AT4G35310.1 34.932 146 92 2 1 146 391 533 4.90e-22 91.7
Msa0877710 AT5G17470.1 37.500 136 82 2 15 148 5 139 5.92e-22 85.9
Msa0877710 AT5G17470.1 47.541 61 32 0 14 74 79 139 2.79e-12 60.8
Msa0877710 AT1G50700.1 34.932 146 93 2 1 146 367 510 8.56e-22 90.9
Msa0877710 AT4G04700.1 38.095 147 87 3 1 146 325 468 1.48e-21 90.1
Msa0877710 AT5G42380.1 36.232 138 87 1 10 146 47 184 2.16e-21 85.5
Msa0877710 AT1G18890.1 37.333 150 89 4 1 148 357 503 5.25e-21 88.6
Msa0877710 AT3G57530.1 35.374 147 91 3 1 146 357 500 1.19e-20 87.4
Msa0877710 AT5G12480.2 34.228 149 96 2 1 148 259 406 1.22e-20 87.0
Msa0877710 AT2G36180.1 41.176 136 76 3 15 147 3 137 1.39e-20 82.4
Msa0877710 AT5G12480.1 34.228 149 96 2 1 148 353 500 1.47e-20 87.4
Msa0877710 AT3G03400.1 37.600 125 76 1 17 139 10 134 2.30e-20 81.6
Msa0877710 AT3G03410.1 35.556 135 78 1 14 148 4 129 9.75e-20 79.7
Msa0877710 AT3G51850.1 32.877 146 97 1 1 146 348 492 1.04e-19 84.7
Msa0877710 AT2G41410.1 34.459 148 94 3 4 148 62 209 1.44e-19 81.6
Msa0877710 AT5G19450.2 32.215 149 99 2 1 148 351 498 7.69e-19 82.4
Msa0877710 AT5G19450.1 32.215 149 99 2 1 148 351 498 7.69e-19 82.4
Msa0877710 AT4G04710.3 34.694 147 92 3 1 146 312 455 1.02e-18 82.0
Msa0877710 AT4G04710.2 34.694 147 92 3 1 146 326 469 1.04e-18 82.0
Msa0877710 AT4G04710.1 34.694 147 92 3 1 146 339 482 1.09e-18 82.0
Msa0877710 AT2G41860.1 31.507 146 99 1 1 146 348 492 7.48e-18 79.3
Msa0877710 AT2G41860.2 31.507 146 99 1 1 146 348 492 8.08e-18 79.3
Msa0877710 AT4G04710.4 34.899 149 91 4 1 146 339 484 1.48e-17 78.6
Msa0877710 AT1G50700.2 30.233 172 92 3 1 146 367 536 2.21e-17 78.2
Msa0877710 AT2G31500.1 32.000 150 97 4 1 147 360 507 9.73e-17 76.3
Msa0877710 AT4G20780.1 33.775 151 78 3 17 146 34 183 1.43e-16 73.2
Msa0877710 AT4G04740.2 34.848 132 82 3 2 132 363 491 4.52e-16 74.3
Msa0877710 AT5G44460.1 33.566 143 83 2 16 146 32 174 3.72e-15 69.3
Msa0877710 AT1G76040.3 36.634 101 63 1 1 101 405 504 1.46e-14 70.1
Msa0877710 AT4G21940.3 37.374 99 61 1 1 99 395 492 2.30e-14 69.3
Msa0877710 AT1G76650.1 32.168 143 90 2 7 146 38 176 3.73e-14 66.6
Msa0877710 AT1G76650.3 32.168 143 90 2 7 146 38 176 3.73e-14 66.6
Msa0877710 AT5G66210.1 27.632 152 98 4 1 146 358 503 4.46e-14 68.6
Msa0877710 AT5G66210.2 27.632 152 98 4 1 146 358 503 4.46e-14 68.6
Msa0877710 AT2G17890.1 27.632 152 98 5 1 146 404 549 5.35e-14 68.6
Msa0877710 AT3G51850.2 33.962 106 69 1 1 106 348 452 5.42e-14 68.6
Msa0877710 AT1G76640.1 31.852 135 86 2 16 146 26 158 8.35e-14 65.1
Msa0877710 AT5G49480.1 28.758 153 101 3 1 146 7 158 5.68e-13 63.2
Msa0877710 AT1G21550.1 30.719 153 82 4 11 147 9 153 1.17e-12 62.0
Msa0877710 AT1G50700.3 35.354 99 63 1 1 99 367 464 1.59e-12 64.3
Msa0877710 AT1G76650.2 31.469 143 81 3 7 146 38 166 1.42e-11 59.3
Msa0877710 AT5G66210.3 26.718 131 90 3 1 125 358 488 2.67e-11 60.8
Msa0877710 AT4G36070.1 27.273 154 100 5 1 148 367 514 7.55e-11 59.3
Msa0877710 AT4G36070.2 27.273 154 100 5 1 148 367 514 7.77e-11 59.3

Find 65 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCCTACCATTCATATTT+TGG 0.145819 6_1:-17636392 Msa0877710:three_prime_UTR
CACGTAGCCTCAAATTTAAT+TGG 0.280446 6_1:+17636230 None:intergenic
ACAAGAGGTTTAAGTAGTTT+AGG 0.305310 6_1:-17636285 Msa0877710:three_prime_UTR
GGAGCTGAAAGAGGCGTTTC+GGG 0.325103 6_1:-17636855 Msa0877710:CDS
CCCAACTGAGGCAGAGCTTC+AGG 0.327616 6_1:-17636978 Msa0877710:CDS
GGAACTGTTATGCGTTCATT+GGG 0.343588 6_1:-17637007 Msa0877710:CDS
TGGAACTGTTATGCGTTCAT+TGG 0.360083 6_1:-17637008 Msa0877710:CDS
ATGGTTAAATGTTTGATTAG+TGG 0.365514 6_1:-17636510 Msa0877710:three_prime_UTR
TTGATCAAGGAAATGACAAT+AGG 0.365586 6_1:-17636607 Msa0877710:three_prime_UTR
AGGAGCTGAAAGAGGCGTTT+CGG 0.391958 6_1:-17636856 Msa0877710:CDS
TAGAAAACCAATTAAATTTG+AGG 0.405121 6_1:-17636237 None:intergenic
AGCTTTCAGCTTATTCGATA+AGG 0.414465 6_1:-17639737 Msa0877710:CDS
TGATCAAGGAAATGACAATA+GGG 0.419292 6_1:-17636606 Msa0877710:three_prime_UTR
TCCTGAAGCTCTGCCTCAGT+TGG 0.419465 6_1:+17636977 None:intergenic
TGATCAGATCTCTGAGTTCA+AGG 0.430216 6_1:-17639761 Msa0877710:CDS
GTGGTAAGTCCTGCTGCTAT+TGG 0.435030 6_1:-17636491 Msa0877710:three_prime_UTR
CCTGAAGCTCTGCCTCAGTT+GGG 0.457983 6_1:+17636978 None:intergenic
AAACTATGAGGAATTCGTTA+AGG 0.465882 6_1:-17636696 Msa0877710:CDS
TTTAAGTAGTTTAGGACTTG+TGG 0.466718 6_1:-17636277 Msa0877710:three_prime_UTR
ATCCGTGAGGCTGATGTTGA+TGG 0.484617 6_1:-17636731 Msa0877710:CDS
TGCATCACAACCAAGGAGCT+TGG 0.485199 6_1:-17637028 Msa0877710:CDS
CGCCTCTTTCAGCTCCTCCT+CGG 0.490822 6_1:+17636862 None:intergenic
CATAACAGTTCCAAGCTCCT+TGG 0.491995 6_1:+17637018 None:intergenic
CCCTGAGTTTCTTAACCTCA+TGG 0.495316 6_1:-17636909 Msa0877710:CDS
ATTTCAGAGAATGTTGATCA+AGG 0.498909 6_1:-17636620 Msa0877710:three_prime_UTR
TGCTATTGGTTGTGGTCGAA+TGG 0.507018 6_1:-17636477 Msa0877710:three_prime_UTR
CATCGGTGAGCTTCTCGCCA+AGG 0.508143 6_1:+17636771 None:intergenic
AGTCCTGCTGCTATTGGTTG+TGG 0.512344 6_1:-17636485 Msa0877710:three_prime_UTR
ACCATTCACCAAAATATGAA+TGG 0.512874 6_1:+17636384 None:intergenic
TTTCAGCTCCTCCTCGGAGT+CGG 0.513859 6_1:+17636868 None:intergenic
CATCTCATCGACTTCTTCAT+CGG 0.523419 6_1:+17636754 None:intergenic
GCCATGAGGTTAAGAAACTC+AGG 0.525054 6_1:+17636908 None:intergenic
TGATGGTCAAATAAACTATG+AGG 0.543599 6_1:-17636708 Msa0877710:CDS
CTCCGAGGAGGAGCTGAAAG+AGG 0.551298 6_1:-17636864 Msa0877710:CDS
TTTAGAGAGAGAAACTGAAT+CGG 0.551786 6_1:+17639830 None:intergenic
AGGAAATGACAATAGGGGAG+GGG 0.559584 6_1:-17636600 Msa0877710:three_prime_UTR
TTCAGCTTATTCGATAAGGA+TGG 0.562759 6_1:-17639733 Msa0877710:CDS
GGAAATGACAATAGGGGAGG+GGG 0.563777 6_1:-17636599 Msa0877710:three_prime_UTR
GGTGAGCTTCTCGCCAAGGT+TGG 0.567744 6_1:+17636775 None:intergenic
CGACCACAACCAATAGCAGC+AGG 0.573340 6_1:+17636482 None:intergenic
GCAATGATTACTACAAAGCA+AGG 0.582533 6_1:+17636556 None:intergenic
CGTCATGTGATGACCAACCT+TGG 0.582821 6_1:-17636788 Msa0877710:CDS
CCTTCATCTTCCTTGCCATG+AGG 0.583416 6_1:+17636894 None:intergenic
AAGAAGAAGAAAAGCGACGA+TGG 0.585072 6_1:-17639800 Msa0877710:exon
TCTTCTTGAATGGTGACAAG+AGG 0.585083 6_1:-17636300 Msa0877710:three_prime_UTR
CCTCATGGCAAGGAAGATGA+AGG 0.591761 6_1:-17636894 Msa0877710:CDS
ATCAATGAAGTAGATGCTGA+TGG 0.594359 6_1:-17636950 Msa0877710:CDS
CACCATCAACATCAGCCTCA+CGG 0.595594 6_1:+17636729 None:intergenic
GGAATTCGTTAAGGTCATGA+TGG 0.606742 6_1:-17636687 Msa0877710:CDS
AAGGAAATGACAATAGGGGA+GGG 0.609529 6_1:-17636601 Msa0877710:three_prime_UTR
TTCACCAAAATATGAATGGT+AGG 0.610974 6_1:+17636388 None:intergenic
AGTTTCTTAACCTCATGGCA+AGG 0.615477 6_1:-17636904 Msa0877710:CDS
GAGGCTGATGTTGATGGTGA+TGG 0.620773 6_1:-17636725 Msa0877710:CDS
GAAGTAGATGCTGATGGGAA+TGG 0.624358 6_1:-17636944 Msa0877710:CDS
CAAGGAAATGACAATAGGGG+AGG 0.628999 6_1:-17636602 Msa0877710:three_prime_UTR
GATCAAGGAAATGACAATAG+GGG 0.635571 6_1:-17636605 Msa0877710:three_prime_UTR
CCATGAGGTTAAGAAACTCA+GGG 0.643314 6_1:+17636909 None:intergenic
TTATTCGATAAGGATGGCGA+TGG 0.647329 6_1:-17639727 Msa0877710:intron
TGCAGGTTGCATCACAACCA+AGG 0.653135 6_1:-17637035 Msa0877710:intron
GAACTGTTATGCGTTCATTG+GGG 0.667564 6_1:-17637006 Msa0877710:CDS
GATGAAGGACACCGACTCCG+AGG 0.669209 6_1:-17636879 Msa0877710:CDS
TCAATGAAGTAGATGCTGAT+GGG 0.676011 6_1:-17636949 Msa0877710:CDS
GAAGGACACCGACTCCGAGG+AGG 0.689648 6_1:-17636876 Msa0877710:CDS
ATTGGGGCAAAACCCAACTG+AGG 0.728233 6_1:-17636990 Msa0877710:CDS
AGTCGATGAGATGATCCGTG+AGG 0.760734 6_1:-17636744 Msa0877710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATGTAAAAAGAAA+GGG + chr6_1:17639589-17639608 None:intergenic 10.0%
!! AAACAAATTAACAAAATCAA+AGG + chr6_1:17636613-17636632 None:intergenic 15.0%
!!! TTAATTTGTTTTGAATTTCA+TGG - chr6_1:17636622-17636641 Msa0877710:three_prime_UTR 15.0%
!!! AACTTTTATTCATGATAATA+TGG + chr6_1:17638712-17638731 None:intergenic 15.0%
!!! GTTGTTGATTATTATATATA+TGG - chr6_1:17639054-17639073 Msa0877710:intron 15.0%
!! GAAATAAAATGTAAAAAGAA+AGG + chr6_1:17639590-17639609 None:intergenic 15.0%
!!! TCTTTTTACATTTTATTTCA+TGG - chr6_1:17639591-17639610 Msa0877710:intron 15.0%
!!! TTTTATAATTTCTTCTTGAA+TGG - chr6_1:17639810-17639829 Msa0877710:five_prime_UTR 15.0%
!! TACTTACTACTTTATAATGA+CGG - chr6_1:17637091-17637110 Msa0877710:intron 20.0%
!! CGATTCTCTTAAATTATTAT+CGG + chr6_1:17637130-17637149 None:intergenic 20.0%
!! CTGGTTATTAATTACAAAAA+GGG + chr6_1:17637410-17637429 None:intergenic 20.0%
!! ATCATTTAACCATTATATCA+AGG + chr6_1:17637488-17637507 None:intergenic 20.0%
!! TTATTATGTGTTGTCAATAA+CGG - chr6_1:17637658-17637677 Msa0877710:intron 20.0%
!!! TCAAAGTATATGTTTTTCAA+TGG + chr6_1:17637923-17637942 None:intergenic 20.0%
!!! TTTTTCATTCAATCAAATTG+AGG + chr6_1:17637946-17637965 None:intergenic 20.0%
!! GAAAAAAGTTAAATACATGT+TGG - chr6_1:17637960-17637979 Msa0877710:intron 20.0%
!!! ATCAATAACACTTTGAAAAA+GGG + chr6_1:17638098-17638117 None:intergenic 20.0%
!!! AATCAATAACACTTTGAAAA+AGG + chr6_1:17638099-17638118 None:intergenic 20.0%
!! ACAACACTTTCTATTAAATA+GGG - chr6_1:17638312-17638331 Msa0877710:intron 20.0%
!! TTCAAATTCTACTATGATAT+AGG - chr6_1:17638358-17638377 Msa0877710:intron 20.0%
!! TATTTCATTCAATCAAATAC+AGG + chr6_1:17638517-17638536 None:intergenic 20.0%
!!! TTTTCTAGATTAACTTACTT+AGG + chr6_1:17639870-17639889 None:intergenic 20.0%
!!! TTTGGATTAGAATTTTTCCT+AGG - chr6_1:17636577-17636596 Msa0877710:three_prime_UTR 25.0%
!! TTAGAATTTTTCCTAGGTTT+TGG - chr6_1:17636583-17636602 Msa0877710:three_prime_UTR 25.0%
!! AAAGAAAATTGCGATTTGTT+AGG - chr6_1:17636812-17636831 Msa0877710:CDS 25.0%
!!! TATGATAGTTCTAACTTCTA+AGG - chr6_1:17636862-17636881 Msa0877710:CDS 25.0%
! TAGTTTATTACGATAGTGAT+AGG - chr6_1:17636907-17636926 Msa0877710:CDS 25.0%
! CCTATTTAACACTAACAATT+CGG + chr6_1:17637360-17637379 None:intergenic 25.0%
! GCTGGTTATTAATTACAAAA+AGG + chr6_1:17637411-17637430 None:intergenic 25.0%
! TTTGTAATTAATAACCAGCA+AGG - chr6_1:17637412-17637431 Msa0877710:intron 25.0%
! TAAAGATTATGATTCCAATG+AGG - chr6_1:17637436-17637455 Msa0877710:intron 25.0%
!!! AAGTGTTATTGACATTTTTG+TGG - chr6_1:17637538-17637557 Msa0877710:intron 25.0%
! GATTCACTATTTAGTACAAA+GGG + chr6_1:17637749-17637768 None:intergenic 25.0%
! TGATTCACTATTTAGTACAA+AGG + chr6_1:17637750-17637769 None:intergenic 25.0%
!! TATCTTGTTATGTCATTTGA+AGG - chr6_1:17637883-17637902 Msa0877710:intron 25.0%
!! ATCTTGTTATGTCATTTGAA+GGG - chr6_1:17637884-17637903 Msa0877710:intron 25.0%
! AAACTCTCATCTTGATTTAA+TGG - chr6_1:17638036-17638055 Msa0877710:intron 25.0%
!!! TGACATGTTTTGAAAGATAT+GGG - chr6_1:17638198-17638217 Msa0877710:intron 25.0%
! TTATTCAGTATTGTCAATAG+CGG - chr6_1:17638236-17638255 Msa0877710:intron 25.0%
! GACAACACTTTCTATTAAAT+AGG - chr6_1:17638311-17638330 Msa0877710:intron 25.0%
! ATTAGCGACATAACTAAAAT+GGG + chr6_1:17638873-17638892 None:intergenic 25.0%
! TATTAGCGACATAACTAAAA+TGG + chr6_1:17638874-17638893 None:intergenic 25.0%
! ATTAGTTAGATGATTATGGT+TGG + chr6_1:17638955-17638974 None:intergenic 25.0%
! GAGAATTAGTTAGATGATTA+TGG + chr6_1:17638959-17638978 None:intergenic 25.0%
! TAACTAATTCTCATCTAACT+AGG - chr6_1:17638967-17638986 Msa0877710:intron 25.0%
! TAAGAAGTCATTTGCTTATA+GGG - chr6_1:17639005-17639024 Msa0877710:intron 25.0%
!!! CTCTGAAATTTAGATTTTTG+TGG + chr6_1:17639489-17639508 None:intergenic 25.0%
! ATGGTTAAATGTTTGATTAG+TGG - chr6_1:17639610-17639629 Msa0877710:intron 25.0%
TTTAGAGAGAGAAACTGAAT+CGG + chr6_1:17636293-17636312 None:intergenic 30.0%
!!! TTTGTGATGCGATTTTGATT+AGG - chr6_1:17636489-17636508 Msa0877710:three_prime_UTR 30.0%
!! GATTGATTTGTGATGTGATT+TGG - chr6_1:17636559-17636578 Msa0877710:three_prime_UTR 30.0%
ATGACTTTGATTACAAGTGT+TGG + chr6_1:17637217-17637236 None:intergenic 30.0%
CCGAATTGTTAGTGTTAAAT+AGG - chr6_1:17637357-17637376 Msa0877710:intron 30.0%
ATCATAATCTTTATCCTTGC+TGG + chr6_1:17637429-17637448 None:intergenic 30.0%
! ACATTTTTGTGGATATCCTA+TGG - chr6_1:17637549-17637568 Msa0877710:intron 30.0%
!! TTTTGAGAAACATGACATGA+TGG - chr6_1:17637599-17637618 Msa0877710:intron 30.0%
! TAACGGATCAAAGCAAATAA+TGG - chr6_1:17637675-17637694 Msa0877710:intron 30.0%
AACGGATCAAAGCAAATAAT+GGG - chr6_1:17637676-17637695 Msa0877710:intron 30.0%
! ACATGTTGGCTATATTTATG+TGG - chr6_1:17637974-17637993 Msa0877710:intron 30.0%
TATGTGGCTTATATACTAGT+AGG - chr6_1:17637990-17638009 Msa0877710:intron 30.0%
ATGTGGCTTATATACTAGTA+GGG - chr6_1:17637991-17638010 Msa0877710:intron 30.0%
! ATTCGTAGATATTTTGCCTA+TGG - chr6_1:17638130-17638149 Msa0877710:intron 30.0%
!!! TGTATGAGTTTTGAGAAACA+TGG - chr6_1:17638171-17638190 Msa0877710:intron 30.0%
!!! GTGACATGTTTTGAAAGATA+TGG - chr6_1:17638197-17638216 Msa0877710:intron 30.0%
TATTCAGTATTGTCAATAGC+GGG - chr6_1:17638237-17638256 Msa0877710:intron 30.0%
TGGTTCAGATACTTGAAAAA+TGG - chr6_1:17638812-17638831 Msa0877710:intron 30.0%
GTAAGAAGTCATTTGCTTAT+AGG - chr6_1:17639004-17639023 Msa0877710:intron 30.0%
AAGAAGTCATTTGCTTATAG+GGG - chr6_1:17639006-17639025 Msa0877710:intron 30.0%
TGATGGTCAAATAAACTATG+AGG - chr6_1:17639412-17639431 Msa0877710:intron 30.0%
AAACTATGAGGAATTCGTTA+AGG - chr6_1:17639424-17639443 Msa0877710:intron 30.0%
ATTTCAGAGAATGTTGATCA+AGG - chr6_1:17639500-17639519 Msa0877710:intron 30.0%
TTGATCAAGGAAATGACAAT+AGG - chr6_1:17639513-17639532 Msa0877710:intron 30.0%
TGATCAAGGAAATGACAATA+GGG - chr6_1:17639514-17639533 Msa0877710:intron 30.0%
! AGTTCCTACCATTCATATTT+TGG - chr6_1:17639728-17639747 Msa0877710:CDS 30.0%
TTCACCAAAATATGAATGGT+AGG + chr6_1:17639735-17639754 None:intergenic 30.0%
!!! ACCATTCATATTTTGGTGAA+TGG - chr6_1:17639735-17639754 Msa0877710:CDS 30.0%
ACCATTCACCAAAATATGAA+TGG + chr6_1:17639739-17639758 None:intergenic 30.0%
ACAAGAGGTTTAAGTAGTTT+AGG - chr6_1:17639835-17639854 Msa0877710:five_prime_UTR 30.0%
! TTTAAGTAGTTTAGGACTTG+TGG - chr6_1:17639843-17639862 Msa0877710:five_prime_UTR 30.0%
AGCTTTCAGCTTATTCGATA+AGG - chr6_1:17636383-17636402 Msa0877710:three_prime_UTR 35.0%
TTCAGCTTATTCGATAAGGA+TGG - chr6_1:17636387-17636406 Msa0877710:three_prime_UTR 35.0%
TCAAAGGAAAACCAAAACCT+AGG + chr6_1:17636597-17636616 None:intergenic 35.0%
CGATAGTGATAGGTAAATAC+TGG - chr6_1:17636917-17636936 Msa0877710:CDS 35.0%
ACACAACACTGGTAGTAATT+TGG + chr6_1:17637293-17637312 None:intergenic 35.0%
ATGATTCCAATGAGGAAGTA+AGG - chr6_1:17637444-17637463 Msa0877710:intron 35.0%
TGATTCCAATGAGGAAGTAA+GGG - chr6_1:17637445-17637464 Msa0877710:intron 35.0%
GAACTCTCACCTTGATATAA+TGG - chr6_1:17637476-17637495 Msa0877710:intron 35.0%
TAAACAAGCTCACAAACCAT+AGG + chr6_1:17637568-17637587 None:intergenic 35.0%
TAAACAAACTCACAAGCCAT+AGG + chr6_1:17638149-17638168 None:intergenic 35.0%
!! ATTATGGTTGGTTTACATCC+TGG + chr6_1:17638943-17638962 None:intergenic 35.0%
TATATATGGTGTGAACTTGC+AGG - chr6_1:17639068-17639087 Msa0877710:intron 35.0%
ATCAATGAAGTAGATGCTGA+TGG - chr6_1:17639170-17639189 Msa0877710:intron 35.0%
TCAATGAAGTAGATGCTGAT+GGG - chr6_1:17639171-17639190 Msa0877710:intron 35.0%
! GTTTTTGACAAGGATCAGAA+TGG - chr6_1:17639287-17639306 Msa0877710:intron 35.0%
GATCAAGGAAATGACAATAG+GGG - chr6_1:17639515-17639534 Msa0877710:intron 35.0%
GCAATGATTACTACAAAGCA+AGG + chr6_1:17639567-17639586 None:intergenic 35.0%
AAGAAGAAGAAAAGCGACGA+TGG - chr6_1:17636320-17636339 Msa0877710:three_prime_UTR 40.0%
TGATCAGATCTCTGAGTTCA+AGG - chr6_1:17636359-17636378 Msa0877710:three_prime_UTR 40.0%
TTATTCGATAAGGATGGCGA+TGG - chr6_1:17636393-17636412 Msa0877710:three_prime_UTR 40.0%
TTCGGATCGAATGCATAAAG+TGG + chr6_1:17637031-17637050 None:intergenic 40.0%
ACCTATGCAGTACAACGATT+CGG + chr6_1:17637049-17637068 None:intergenic 40.0%
ATGTCAGTGTTGTGTTAGTG+TGG - chr6_1:17637166-17637185 Msa0877710:intron 40.0%
!! TACAAGTGTTGGTGCTACAA+AGG + chr6_1:17637206-17637225 None:intergenic 40.0%
ATCACATGTCGATGTCATGT+TGG + chr6_1:17637248-17637267 None:intergenic 40.0%
ACACTAACAATTCGGACCAA+AGG + chr6_1:17637352-17637371 None:intergenic 40.0%
CTTATCCCTTACTTCCTCAT+TGG + chr6_1:17637453-17637472 None:intergenic 40.0%
!! ATAGAGGTGCTACATCATAG+TGG + chr6_1:17637799-17637818 None:intergenic 40.0%
AACTCAGTGTTGTCGAATAG+AGG + chr6_1:17637815-17637834 None:intergenic 40.0%
TAGTAGGGTGAGAGAAGTAA+GGG - chr6_1:17638006-17638025 Msa0877710:intron 40.0%
TTGAAAAAGGGTTGCAGATG+TGG + chr6_1:17638086-17638105 None:intergenic 40.0%
AGTTGAATACACACTGACAC+TGG - chr6_1:17638536-17638555 Msa0877710:intron 40.0%
TCTCCAGCACTTACTAACAT+GGG + chr6_1:17638584-17638603 None:intergenic 40.0%
TACGTGGCTTATATACGAGA+AGG - chr6_1:17638645-17638664 Msa0877710:intron 40.0%
ACGTGGCTTATATACGAGAA+GGG - chr6_1:17638646-17638665 Msa0877710:intron 40.0%
AGCTTGATCTCATAACCTCA+AGG - chr6_1:17638785-17638804 Msa0877710:intron 40.0%
GCTTGATCTCATAACCTCAA+GGG - chr6_1:17638786-17638805 Msa0877710:intron 40.0%
CTTGATCTCATAACCTCAAG+GGG - chr6_1:17638787-17638806 Msa0877710:intron 40.0%
TATGTCGCTAATACACTAGC+AGG - chr6_1:17638881-17638900 Msa0877710:intron 40.0%
ATGTCGCTAATACACTAGCA+GGG - chr6_1:17638882-17638901 Msa0877710:intron 40.0%
CCTGGCTAGTAAGATGATTA+TGG + chr6_1:17638925-17638944 None:intergenic 40.0%
CCATAATCATCTTACTAGCC+AGG - chr6_1:17638922-17638941 Msa0877710:intron 40.0%
TGGAACTGTTATGCGTTCAT+TGG - chr6_1:17639112-17639131 Msa0877710:intron 40.0%
GGAACTGTTATGCGTTCATT+GGG - chr6_1:17639113-17639132 Msa0877710:intron 40.0%
GAACTGTTATGCGTTCATTG+GGG - chr6_1:17639114-17639133 Msa0877710:intron 40.0%
CCATGAGGTTAAGAAACTCA+GGG + chr6_1:17639214-17639233 None:intergenic 40.0%
AGTTTCTTAACCTCATGGCA+AGG - chr6_1:17639216-17639235 Msa0877710:intron 40.0%
!! CATCTCATCGACTTCTTCAT+CGG + chr6_1:17639369-17639388 None:intergenic 40.0%
GGAATTCGTTAAGGTCATGA+TGG - chr6_1:17639433-17639452 Msa0877710:intron 40.0%
AAGGAAATGACAATAGGGGA+GGG - chr6_1:17639519-17639538 Msa0877710:intron 40.0%
TCTTCTTGAATGGTGACAAG+AGG - chr6_1:17639820-17639839 Msa0877710:five_prime_UTR 40.0%
TCCGAATCGTTGTACTGCAT+AGG - chr6_1:17637045-17637064 Msa0877710:intron 45.0%
GAGAAACATGACATGATGGC+AGG - chr6_1:17637603-17637622 Msa0877710:intron 45.0%
!! GGCAGGTGTTGAAAGATACT+AGG - chr6_1:17637620-17637639 Msa0877710:intron 45.0%
CTAGTAGGGTGAGAGAAGTA+AGG - chr6_1:17638005-17638024 Msa0877710:intron 45.0%
CACTGTAGTCTGTAGCATAG+TGG + chr6_1:17638274-17638293 None:intergenic 45.0%
! CTTACTAACATGGGTGCTGT+TGG + chr6_1:17638575-17638594 None:intergenic 45.0%
CTCTCCAGCACTTACTAACA+TGG + chr6_1:17638585-17638604 None:intergenic 45.0%
!! CATGTTAGTAAGTGCTGGAG+AGG - chr6_1:17638583-17638602 Msa0877710:intron 45.0%
CGTAACAATGCCAACAGCAA+GGG + chr6_1:17638629-17638648 None:intergenic 45.0%
ACGTAACAATGCCAACAGCA+AGG + chr6_1:17638630-17638649 None:intergenic 45.0%
! TTGCTGTTGGCATTGTTACG+TGG - chr6_1:17638629-17638648 Msa0877710:intron 45.0%
AGAAGGGTGAGAGATGTAAG+TGG - chr6_1:17638662-17638681 Msa0877710:intron 45.0%
!! GTATGTGTGACTAGTCTGTG+TGG - chr6_1:17638746-17638765 Msa0877710:intron 45.0%
CATAACAGTTCCAAGCTCCT+TGG + chr6_1:17639105-17639124 None:intergenic 45.0%
GAAGTAGATGCTGATGGGAA+TGG - chr6_1:17639176-17639195 Msa0877710:intron 45.0%
CCCTGAGTTTCTTAACCTCA+TGG - chr6_1:17639211-17639230 Msa0877710:intron 45.0%
GCCATGAGGTTAAGAAACTC+AGG + chr6_1:17639215-17639234 None:intergenic 45.0%
CAAGGAAATGACAATAGGGG+AGG - chr6_1:17639518-17639537 Msa0877710:intron 45.0%
AGGAAATGACAATAGGGGAG+GGG - chr6_1:17639520-17639539 Msa0877710:intron 45.0%
! TGCTATTGGTTGTGGTCGAA+TGG - chr6_1:17639643-17639662 Msa0877710:intron 45.0%
GTGTTAGTGTGGACACTCTC+CGG - chr6_1:17637177-17637196 Msa0877710:intron 50.0%
!! GTTGGTGCTACAAAGGTGTC+CGG + chr6_1:17637199-17637218 None:intergenic 50.0%
CAGACACACAGACACAACAC+TGG + chr6_1:17637304-17637323 None:intergenic 50.0%
CTGTGTCAGTGCTTCATAGC+CGG - chr6_1:17637321-17637340 Msa0877710:intron 50.0%
GCACCCATGTTAGTAAGTGC+TGG - chr6_1:17638578-17638597 Msa0877710:intron 50.0%
TGCTGGAGAGGAGTAACACT+TGG - chr6_1:17638595-17638614 Msa0877710:intron 50.0%
AGGGTGAGAGATGTAAGTGG+TGG - chr6_1:17638665-17638684 Msa0877710:intron 50.0%
! GAGAGATGTAAGTGGTGGAG+AGG - chr6_1:17638670-17638689 Msa0877710:intron 50.0%
TCTCATAACCTCAAGGGGCA+TGG - chr6_1:17638792-17638811 Msa0877710:intron 50.0%
TATCTGAACCATGCCCCTTG+AGG + chr6_1:17638803-17638822 None:intergenic 50.0%
TGCAGGTTGCATCACAACCA+AGG - chr6_1:17639085-17639104 Msa0877710:intron 50.0%
TGCATCACAACCAAGGAGCT+TGG - chr6_1:17639092-17639111 Msa0877710:intron 50.0%
ATTGGGGCAAAACCCAACTG+AGG - chr6_1:17639130-17639149 Msa0877710:intron 50.0%
CCTTCATCTTCCTTGCCATG+AGG + chr6_1:17639229-17639248 None:intergenic 50.0%
CCTCATGGCAAGGAAGATGA+AGG - chr6_1:17639226-17639245 Msa0877710:intron 50.0%
!! AGGAGCTGAAAGAGGCGTTT+CGG - chr6_1:17639264-17639283 Msa0877710:intron 50.0%
!!! GGCGTTTCGGGTTTTTGACA+AGG - chr6_1:17639277-17639296 Msa0877710:intron 50.0%
CGTCATGTGATGACCAACCT+TGG - chr6_1:17639332-17639351 Msa0877710:intron 50.0%
AGTCGATGAGATGATCCGTG+AGG - chr6_1:17639376-17639395 Msa0877710:intron 50.0%
ATCCGTGAGGCTGATGTTGA+TGG - chr6_1:17639389-17639408 Msa0877710:intron 50.0%
CACCATCAACATCAGCCTCA+CGG + chr6_1:17639394-17639413 None:intergenic 50.0%
!! GAGGCTGATGTTGATGGTGA+TGG - chr6_1:17639395-17639414 Msa0877710:intron 50.0%
GGAAATGACAATAGGGGAGG+GGG - chr6_1:17639521-17639540 Msa0877710:intron 50.0%
GTGGTAAGTCCTGCTGCTAT+TGG - chr6_1:17639629-17639648 Msa0877710:intron 50.0%
! AGTCCTGCTGCTATTGGTTG+TGG - chr6_1:17639635-17639654 Msa0877710:intron 50.0%
TTCATAGCCGGACACGCCTT+TGG - chr6_1:17637333-17637352 Msa0877710:intron 55.0%
! ATTCGGACCAAAGGCGTGTC+CGG + chr6_1:17637343-17637362 None:intergenic 55.0%
! GGATGCGTTACCCTTGCTGT+TGG - chr6_1:17638616-17638635 Msa0877710:intron 55.0%
CCTGAAGCTCTGCCTCAGTT+GGG + chr6_1:17639145-17639164 None:intergenic 55.0%
TCCTGAAGCTCTGCCTCAGT+TGG + chr6_1:17639146-17639165 None:intergenic 55.0%
TTTCAGCTCCTCCTCGGAGT+CGG + chr6_1:17639255-17639274 None:intergenic 55.0%
!! GGAGCTGAAAGAGGCGTTTC+GGG - chr6_1:17639265-17639284 Msa0877710:intron 55.0%
CGACCACAACCAATAGCAGC+AGG + chr6_1:17639641-17639660 None:intergenic 55.0%
CCCAACTGAGGCAGAGCTTC+AGG - chr6_1:17639142-17639161 Msa0877710:intron 60.0%
!! GATGAAGGACACCGACTCCG+AGG - chr6_1:17639241-17639260 Msa0877710:intron 60.0%
CTCCGAGGAGGAGCTGAAAG+AGG - chr6_1:17639256-17639275 Msa0877710:intron 60.0%
CGCCTCTTTCAGCTCCTCCT+CGG + chr6_1:17639261-17639280 None:intergenic 60.0%
GGTGAGCTTCTCGCCAAGGT+TGG + chr6_1:17639348-17639367 None:intergenic 60.0%
CATCGGTGAGCTTCTCGCCA+AGG + chr6_1:17639352-17639371 None:intergenic 60.0%
!! GAAGGACACCGACTCCGAGG+AGG - chr6_1:17639244-17639263 Msa0877710:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 17636238 17639904 17636238 ID=Msa0877710;Name=Msa0877710
chr6_1 mRNA 17636238 17639904 17636238 ID=Msa0877710-mRNA-1;Parent=Msa0877710;Name=Msa0877710-mRNA-1;_AED=0.09;_eAED=0.09;_QI=101|1|1|1|1|1|2|441|149
chr6_1 exon 17636238 17637052 17636238 ID=Msa0877710-mRNA-1:exon:4821;Parent=Msa0877710-mRNA-1
chr6_1 exon 17639728 17639904 17639728 ID=Msa0877710-mRNA-1:exon:4820;Parent=Msa0877710-mRNA-1
chr6_1 five_prime_UTR 17639804 17639904 17639804 ID=Msa0877710-mRNA-1:five_prime_utr;Parent=Msa0877710-mRNA-1
chr6_1 CDS 17639728 17639803 17639728 ID=Msa0877710-mRNA-1:cds;Parent=Msa0877710-mRNA-1
chr6_1 CDS 17636679 17637052 17636679 ID=Msa0877710-mRNA-1:cds;Parent=Msa0877710-mRNA-1
chr6_1 three_prime_UTR 17636238 17636678 17636238 ID=Msa0877710-mRNA-1:three_prime_utr;Parent=Msa0877710-mRNA-1
Gene Sequence

>Msa0877710

ATGGCAGATCAACTCACAGATGATCAGATCTCTGAGTTCAAGGAAGCTTTCAGCTTATTCGATAAGGATGGCGATGGTTGCATCACAACCAAGGAGCTTGGAACTGTTATGCGTTCATTGGGGCAAAACCCAACTGAGGCAGAGCTTCAGGACATGATCAATGAAGTAGATGCTGATGGGAATGGTACTATTGACTTCCCTGAGTTTCTTAACCTCATGGCAAGGAAGATGAAGGACACCGACTCCGAGGAGGAGCTGAAAGAGGCGTTTCGGGTTTTTGACAAGGATCAGAATGGTTTCATTTCTGCTGCTGAGCTTCGTCATGTGATGACCAACCTTGGCGAGAAGCTCACCGATGAAGAAGTCGATGAGATGATCCGTGAGGCTGATGTTGATGGTGATGGTCAAATAAACTATGAGGAATTCGTTAAGGTCATGATGGCTAAATGA
Protein sequence

>Msa0877710

MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*