AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1406110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406110 MtrunA17_Chr1g0201551 79.920 249 7 1 1 249 1 206 3.72e-139 389
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406110 AT1G22790.1 46.538 260 84 7 1 249 1 216 1.05e-61 193
Msa1406110 AT1G22790.2 46.538 260 84 7 1 249 1 216 1.05e-61 193
Msa1406110 AT1G34010.3 36.800 250 89 7 1 249 1 182 1.18e-41 140
Msa1406110 AT1G34010.1 36.800 250 89 7 1 249 1 182 1.18e-41 140
Msa1406110 AT1G34010.2 36.800 250 89 7 1 249 66 247 3.85e-41 141

Find 110 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGGCTTACTTGTTATTC+TGG 0.167627 tig0023189:+28420 Msa1406110:CDS
TTCTTCTCTGCTTCGGCTTC+AGG 0.195978 tig0023189:+25651 Msa1406110:CDS
GGGCCTGAGCCTACTCCTTT+TGG 0.208630 tig0023189:+25683 Msa1406110:CDS
CATGTCCTATAAACCATTTC+AGG 0.267175 tig0023189:-28444 None:intergenic
GGAGTTGAGGGTCAGATTCT+TGG 0.321871 tig0023189:-25767 None:intergenic
TGAAGTTTCATTAAGACGTT+AGG 0.331449 tig0023189:+29186 Msa1406110:three_prime_UTR
CTTCTTTCTGCTTGATCACC+AGG 0.334073 tig0023189:-26089 None:intergenic
TGCTTTGGTCGCACTTCCGC+AGG 0.348461 tig0023189:+25840 Msa1406110:CDS
ATCACCAATGTCAACGATAA+TGG 0.368141 tig0023189:-28346 None:intergenic
TTGTTATTCTGGACCTGAAA+TGG 0.369570 tig0023189:+28431 Msa1406110:CDS
CTGATGTTATTTGCAGTAGA+AGG 0.376579 tig0023189:+25621 Msa1406110:exon
TGTGCCTCCTTTGTCTGCTT+TGG 0.387522 tig0023189:+25825 Msa1406110:CDS
CTTGGTCTACCAACTGGTAA+TGG 0.398010 tig0023189:-25749 None:intergenic
TGGAGGATTCTTCTCTGCTT+CGG 0.400442 tig0023189:+25644 Msa1406110:CDS
TCAGATGATGAATATGATAA+TGG 0.406348 tig0023189:+29127 Msa1406110:CDS
TCTTCTCTGCTTCGGCTTCA+GGG 0.410976 tig0023189:+25652 Msa1406110:CDS
ACCTGATGCGTCTTGCTCAT+TGG 0.415636 tig0023189:-26048 None:intergenic
GCGGGAAAGGCGATTCTTTG+TGG 0.428089 tig0023189:-25799 None:intergenic
CATAACACAAATTCGTCAAC+AGG 0.436878 tig0023189:-29531 None:intergenic
CCTCATTCCTTTGACCCAAA+AGG 0.437528 tig0023189:-25698 None:intergenic
AACAAATTGATGACAGGTAT+AGG 0.442079 tig0023189:-29365 None:intergenic
TGATAACAATGATGGTATAA+AGG 0.444241 tig0023189:+25965 Msa1406110:CDS
GCATTTGTTGTTCTTCTAAG+AGG 0.444468 tig0023189:+25552 Msa1406110:five_prime_UTR
TATATACACCAACATGTTGC+GGG 0.450809 tig0023189:+29292 Msa1406110:three_prime_UTR
TCCTTTCCATCATTAGAAAC+CGG 0.451042 tig0023189:-25927 None:intergenic
TGCAGCTATGGTGTTTACCT+TGG 0.453966 tig0023189:+28403 Msa1406110:CDS
TGGAAGCCAGCTGGAGTTGA+GGG 0.459813 tig0023189:-25779 None:intergenic
TGGTGAAACATCATGTTGTT+GGG 0.460560 tig0023189:-25898 None:intergenic
ACCAATGAGCAAGACGCATC+AGG 0.466072 tig0023189:+26047 Msa1406110:CDS
AGACGTTAGGGTCATTCATC+GGG 0.469465 tig0023189:+29199 Msa1406110:three_prime_UTR
TATAAATTAAGTCCATGTTC+CGG 0.470758 tig0023189:+29590 Msa1406110:three_prime_UTR
CAGATTCTTGGTCTACCAAC+TGG 0.473927 tig0023189:-25755 None:intergenic
ATAACATCAGTTCTGCTCAT+TGG 0.474198 tig0023189:-25608 None:intergenic
AGGAGGCACACCCGCGGGAA+AGG 0.474287 tig0023189:-25812 None:intergenic
CTCTTAAAAGTAGCATTAGA+AGG 0.478292 tig0023189:+25991 Msa1406110:CDS
GTTCCACGGTGCAACTCTCA+TGG 0.480426 tig0023189:-25727 None:intergenic
TGGGTTGGTCCGACTTTAAG+AGG 0.483807 tig0023189:-25879 None:intergenic
GGGCTACCGGTTTCTAATGA+TGG 0.487640 tig0023189:+25921 Msa1406110:CDS
GTGGAAGCCAGCTGGAGTTG+AGG 0.488108 tig0023189:-25780 None:intergenic
CAACAACATGATGTTTCACC+AGG 0.491096 tig0023189:+25900 Msa1406110:CDS
CTGGTGAAACATCATGTTGT+TGG 0.491892 tig0023189:-25899 None:intergenic
ATAAAACAATTGCCGGAACA+TGG 0.498814 tig0023189:-29602 None:intergenic
TTCAATTTACATTATCGCAC+AGG 0.500378 tig0023189:-29167 None:intergenic
ATCTGACCCTCAACTCCAGC+TGG 0.500906 tig0023189:+25773 Msa1406110:CDS
GGACATGTCGTTTGTACTCC+TGG 0.502337 tig0023189:+26071 Msa1406110:CDS
GAAGTTTCATTAAGACGTTA+GGG 0.506913 tig0023189:+29187 Msa1406110:three_prime_UTR
GTCGGCGGCGCGTGGATCGA+CGG 0.510656 tig0023189:-24707 None:intergenic
TGATGTTTCACCAGGGCTAC+CGG 0.511052 tig0023189:+25908 Msa1406110:CDS
AAGACGTTAGGGTCATTCAT+CGG 0.512007 tig0023189:+29198 Msa1406110:three_prime_UTR
TTCCTTCAACTGCAGTGAAG+TGG 0.515417 tig0023189:+29099 Msa1406110:intron
GACAAAGGAGGCACACCCGC+GGG 0.516351 tig0023189:-25817 None:intergenic
CATATAGATGATAACAATGA+TGG 0.521660 tig0023189:+25957 Msa1406110:CDS
TCATTAGAAACCGGTAGCCC+TGG 0.527877 tig0023189:-25918 None:intergenic
GATTCTTTGTGGAAGCCAGC+TGG 0.528710 tig0023189:-25788 None:intergenic
GACCTGTGCTTCTGATTCTC+CGG 0.532469 tig0023189:+24727 Msa1406110:five_prime_UTR
TTATTTGCAGTAGAAGGTGG+AGG 0.532906 tig0023189:+25627 Msa1406110:CDS
GACCCAAAAGGAGTAGGCTC+AGG 0.534302 tig0023189:-25686 None:intergenic
CTGGTGATCAAGCAGAAAGA+AGG 0.536495 tig0023189:+26090 Msa1406110:CDS
CGTGGATCGACGGTGAAGAA+TGG 0.539299 tig0023189:-24697 None:intergenic
AAGCACAGGTCGGCGGCGCG+TGG 0.540061 tig0023189:-24715 None:intergenic
GAAACATCATGTTGTTGGGT+TGG 0.541784 tig0023189:-25894 None:intergenic
ATCTTTAACACAACATCACT+CGG 0.541788 tig0023189:+29228 Msa1406110:three_prime_UTR
AGCACCATTATCGTTGACAT+TGG 0.544239 tig0023189:+28342 Msa1406110:CDS
ATTATCGTTGACATTGGTGA+TGG 0.545602 tig0023189:+28348 Msa1406110:CDS
ATGAACTAAATACTATGCTA+TGG 0.549688 tig0023189:+29455 Msa1406110:three_prime_UTR
TTCCACGGTGCAACTCTCAT+GGG 0.559762 tig0023189:-25726 None:intergenic
GTCAACGATAATGGTGCTGA+AGG 0.560710 tig0023189:-28337 None:intergenic
AGACAAAGGAGGCACACCCG+CGG 0.568338 tig0023189:-25818 None:intergenic
CAAAGAATCGCCTTTCCCGC+GGG 0.568676 tig0023189:+25802 Msa1406110:CDS
TTCGGCTTCAGGGTATAGCA+AGG 0.570156 tig0023189:+25662 Msa1406110:CDS
GGTCCGACTTTAAGAGGTGA+TGG 0.570924 tig0023189:-25873 None:intergenic
TACCGGAGAATCAGAAGCAC+AGG 0.572060 tig0023189:-24729 None:intergenic
ATGTTATTTGCAGTAGAAGG+TGG 0.573304 tig0023189:+25624 Msa1406110:CDS
TAATAATTCAGTTTCTGTTG+AGG 0.576147 tig0023189:+26022 Msa1406110:CDS
ACCAACTGGTAATGGTTCCA+CGG 0.576625 tig0023189:-25741 None:intergenic
ACCGGTTTCTAATGATGGAA+AGG 0.577810 tig0023189:+25926 Msa1406110:CDS
GCTTTGGTCGCACTTCCGCA+GGG 0.579792 tig0023189:+25841 Msa1406110:CDS
GAGTGATGTTGTGTTAAAGA+TGG 0.580276 tig0023189:-29226 None:intergenic
GTCTCTACTATTGCTTGCTG+CGG 0.582044 tig0023189:+29328 Msa1406110:three_prime_UTR
ATTATGCGGCCGTGAGTCGT+CGG 0.587617 tig0023189:-24671 None:intergenic
ACAAAGAATCGCCTTTCCCG+CGG 0.591445 tig0023189:+25801 Msa1406110:CDS
TTCAACTGCAGTGAAGTGGA+TGG 0.592726 tig0023189:+29103 Msa1406110:intron
TCCTTTGACCCAAAAGGAGT+AGG 0.598947 tig0023189:-25692 None:intergenic
TGTGGGAAGGAATGCAGCTA+TGG 0.599320 tig0023189:+28391 Msa1406110:CDS
TTTGTTGTTCTTCTAAGAGG+AGG 0.605961 tig0023189:+25555 Msa1406110:five_prime_UTR
ATATATACACCAACATGTTG+CGG 0.607841 tig0023189:+29291 Msa1406110:three_prime_UTR
TTATACAACAAATTGATGAC+AGG 0.608212 tig0023189:-29371 None:intergenic
GAATCAGAAGCACAGGTCGG+CGG 0.612402 tig0023189:-24722 None:intergenic
AAATACGAGAATTTGAGCCC+AGG 0.614035 tig0023189:+26153 Msa1406110:CDS
CCAGAATAACAAGTAAGCCA+AGG 0.616750 tig0023189:-28420 None:intergenic
CAGAAAGAAGGAGAGTGCAG+TGG 0.619006 tig0023189:+26102 Msa1406110:CDS
TTGTTATCATCTATATGAGA+GGG 0.619691 tig0023189:-25951 None:intergenic
TCGGCTTCAGGGTATAGCAA+GGG 0.629191 tig0023189:+25663 Msa1406110:CDS
GTTGGTGTATATATCTCCAA+AGG 0.630828 tig0023189:-29282 None:intergenic
ATTGTTATCATCTATATGAG+AGG 0.632848 tig0023189:-25952 None:intergenic
CAATCACTCCCGCAACATGT+TGG 0.633931 tig0023189:-29300 None:intergenic
ACCGTGGAACCATTACCAGT+TGG 0.634769 tig0023189:+25740 Msa1406110:CDS
AGTGCGACCAAAGCAGACAA+AGG 0.639795 tig0023189:-25832 None:intergenic
GTGAAGAATGGTAGATTATG+CGG 0.646865 tig0023189:-24685 None:intergenic
ACTCCATCACCTCTTAAAGT+CGG 0.647699 tig0023189:+25870 Msa1406110:CDS
ATGCGGCCGTGAGTCGTCGG+AGG 0.658910 tig0023189:-24668 None:intergenic
GCGACCAAAGCAGACAAAGG+AGG 0.660173 tig0023189:-25829 None:intergenic
AATGAGCAAGACGCATCAGG+TGG 0.664133 tig0023189:+26050 Msa1406110:CDS
GACGAATTTGTGTTATGACT+AGG 0.666824 tig0023189:+29537 Msa1406110:three_prime_UTR
GAAACTGAATTATTACTGTG+TGG 0.674445 tig0023189:-26014 None:intergenic
GTGCAGTGGACAGATGCTTG+CGG 0.709323 tig0023189:+26116 Msa1406110:CDS
GGAGAATCAGAAGCACAGGT+CGG 0.727041 tig0023189:-24725 None:intergenic
AACAACATGATGTTTCACCA+GGG 0.731260 tig0023189:+25901 Msa1406110:CDS
TGATGGAGTATCATGCCCTG+CGG 0.746184 tig0023189:-25856 None:intergenic
AACCCATGAGAGTTGCACCG+TGG 0.749362 tig0023189:+25724 Msa1406110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTATTATTTGGTTTTT+TGG + tig0023189:24946-24965 Msa1406110:intron 10.0%
!! TGATATATAAAAATCATTTA+TGG + tig0023189:25581-25600 Msa1406110:five_prime_UTR 10.0%
!! TTTATGCAAAAAAAAAAAAA+GGG + tig0023189:27160-27179 Msa1406110:intron 10.0%
!!! TAAACAATTTTTTTTTTACA+GGG - tig0023189:27233-27252 None:intergenic 10.0%
!!! ATGATTATTTTGTTATCTTA+TGG + tig0023189:25361-25380 Msa1406110:intron 15.0%
!! TTTAAAAGATATGAAAATGA+TGG + tig0023189:25470-25489 Msa1406110:intron 15.0%
!! AATAAAATATTCAAATACCT+GGG - tig0023189:26173-26192 None:intergenic 15.0%
!! AAATAAAATATTCAAATACC+TGG - tig0023189:26174-26193 None:intergenic 15.0%
!!! TATTATACATTTTAGATTAG+AGG + tig0023189:26237-26256 Msa1406110:intron 15.0%
!!! TAATTTCTTTTGATCTATTT+TGG + tig0023189:26755-26774 Msa1406110:intron 15.0%
!!! AGGTGAATAATAATAAATTT+TGG + tig0023189:26854-26873 Msa1406110:intron 15.0%
!!! GGTGAATAATAATAAATTTT+GGG + tig0023189:26855-26874 Msa1406110:intron 15.0%
!! TTTATATGATGTTTGATTAA+TGG + tig0023189:26901-26920 Msa1406110:intron 15.0%
!! AAAAATGATCATAATAGAAT+AGG - tig0023189:27060-27079 None:intergenic 15.0%
!! GTTTATGCAAAAAAAAAAAA+AGG + tig0023189:27159-27178 Msa1406110:intron 15.0%
!!! AAACAATTTTTTTTTTACAG+GGG - tig0023189:27232-27251 None:intergenic 15.0%
!!! CTAAACAATTTTTTTTTTAC+AGG - tig0023189:27234-27253 None:intergenic 15.0%
!! AAATACAAATCAAATCAAAT+GGG - tig0023189:27597-27616 None:intergenic 15.0%
!! TAAATACAAATCAAATCAAA+TGG - tig0023189:27598-27617 None:intergenic 15.0%
!! TTGAAAAAATGTTTATAAGT+AGG + tig0023189:27868-27887 Msa1406110:intron 15.0%
!! AGCATAAATGAATTACTTTA+TGG + tig0023189:25161-25180 Msa1406110:intron 20.0%
!!! TTACATATTCAACATGTTTT+TGG + tig0023189:25214-25233 Msa1406110:intron 20.0%
!!! ATCTGATTATTGATTTCTTT+TGG + tig0023189:25515-25534 Msa1406110:intron 20.0%
!! TCCTGACAATAAAATAAAAT+CGG - tig0023189:26273-26292 None:intergenic 20.0%
!!! ATCAAACAAAATAAAGTATC+AGG - tig0023189:26306-26325 None:intergenic 20.0%
!! TTGTAAATTCCAAATGATAT+CGG + tig0023189:26565-26584 Msa1406110:intron 20.0%
!!! AGTTGTCTTTAATTTTCAAA+TGG - tig0023189:26674-26693 None:intergenic 20.0%
!! AGAAATTAATTCAAATTTGC+AGG - tig0023189:26743-26762 None:intergenic 20.0%
!!! ATTTTATTTTCCGATTTGTT+TGG + tig0023189:26982-27001 Msa1406110:intron 20.0%
!! AAAACAAAAACCAAACAAAT+CGG - tig0023189:26995-27014 None:intergenic 20.0%
!!! TTTTTGACCTTTATAATTAG+AGG + tig0023189:27011-27030 Msa1406110:intron 20.0%
!!! AACAATTTTTTTTTTACAGG+GGG - tig0023189:27231-27250 None:intergenic 20.0%
!!! CAAAGAATTTTCAAATTACA+AGG - tig0023189:27264-27283 None:intergenic 20.0%
!! TATTGTTGAACGTAATAAAT+TGG - tig0023189:27519-27538 None:intergenic 20.0%
!! AAAAAATGTTTATAAGTAGG+AGG + tig0023189:27871-27890 Msa1406110:intron 20.0%
!! ATTATGTAGAATACATAACA+TGG + tig0023189:28028-28047 Msa1406110:intron 20.0%
!!! AAGAATGAAAAAAAGTACAT+GGG - tig0023189:28145-28164 None:intergenic 20.0%
!!! AAAGAATGAAAAAAAGTACA+TGG - tig0023189:28146-28165 None:intergenic 20.0%
!! ACTAGAATAGAAAAAGTTTA+TGG + tig0023189:28774-28793 Msa1406110:intron 20.0%
!! TATCATATAGAATCAATTAC+AGG - tig0023189:29073-29092 None:intergenic 20.0%
!!! TCCTTTTTAGCTGTTTTTTT+GGG + tig0023189:25185-25204 Msa1406110:intron 25.0%
!!! GTCTTAAAGTGTTTTTTGTT+TGG + tig0023189:25258-25277 Msa1406110:intron 25.0%
!!! TTGATTTCTTTTGGTTGAAA+AGG + tig0023189:25524-25543 Msa1406110:intron 25.0%
! TTGTTATCATCTATATGAGA+GGG - tig0023189:25954-25973 None:intergenic 25.0%
! ATTGTTATCATCTATATGAG+AGG - tig0023189:25955-25974 None:intergenic 25.0%
! CATATAGATGATAACAATGA+TGG + tig0023189:25957-25976 Msa1406110:CDS 25.0%
! TGATAACAATGATGGTATAA+AGG + tig0023189:25965-25984 Msa1406110:CDS 25.0%
! TAATAATTCAGTTTCTGTTG+AGG + tig0023189:26022-26041 Msa1406110:CDS 25.0%
! CCTGACAATAAAATAAAATC+GGG - tig0023189:26272-26291 None:intergenic 25.0%
! TGTAAAATTCCTTAAAGCTT+GGG - tig0023189:26542-26561 None:intergenic 25.0%
! ATGTAAAATTCCTTAAAGCT+TGG - tig0023189:26543-26562 None:intergenic 25.0%
! TTAAGGATCTACAAGTTTAA+TGG - tig0023189:26607-26626 None:intergenic 25.0%
!! TGTTGTTTATAAACTTCTTG+AGG - tig0023189:27090-27109 None:intergenic 25.0%
!! GAATTTTCAAATTACAAGGT+TGG - tig0023189:27260-27279 None:intergenic 25.0%
! TTTGTAGTCAAAATTCATGA+AGG - tig0023189:27294-27313 None:intergenic 25.0%
! GAAGATCATAAAAGTAATAC+AGG - tig0023189:27455-27474 None:intergenic 25.0%
! TAAGATAAAATCAAATCCCT+TGG - tig0023189:27568-27587 None:intergenic 25.0%
! TAAATGATGTTCCAATAAAC+AGG - tig0023189:27639-27658 None:intergenic 25.0%
! ATATGTTAAAATTCCCACAT+TGG + tig0023189:27833-27852 Msa1406110:intron 25.0%
! TTGAATTAAGCATTACTCTT+TGG + tig0023189:27926-27945 Msa1406110:intron 25.0%
!! TTTTACATTTGATTGATCTG+TGG - tig0023189:28210-28229 None:intergenic 25.0%
! TTAGAAGCAGTATTTAACAT+TGG - tig0023189:28235-28254 None:intergenic 25.0%
! AATTACTTTCAATCAAGTCT+TGG - tig0023189:28801-28820 None:intergenic 25.0%
! GACTTGATTGAAAGTAATTT+AGG + tig0023189:28802-28821 Msa1406110:intron 25.0%
! CTATATGCTTGCATAATATT+GGG - tig0023189:28841-28860 None:intergenic 25.0%
! ACTATATGCTTGCATAATAT+TGG - tig0023189:28842-28861 None:intergenic 25.0%
! ACAGCATATACACAAATTAA+TGG - tig0023189:28965-28984 None:intergenic 25.0%
! ATACCTGTTATTATATGAGT+TGG + tig0023189:28986-29005 Msa1406110:intron 25.0%
! TCAGATGATGAATATGATAA+TGG + tig0023189:29127-29146 Msa1406110:CDS 25.0%
!!! CAAAATGAGTGAAGATTTTT+TGG + tig0023189:29258-29277 Msa1406110:three_prime_UTR 25.0%
!! TTATACAACAAATTGATGAC+AGG - tig0023189:29374-29393 None:intergenic 25.0%
! ATGAACTAAATACTATGCTA+TGG + tig0023189:29455-29474 Msa1406110:three_prime_UTR 25.0%
!!! TATTTTGTAAAGTATCACTG+TGG + tig0023189:29505-29524 Msa1406110:three_prime_UTR 25.0%
AAAGAAAGCAAAGTGAGATT+TGG - tig0023189:24844-24863 None:intergenic 30.0%
CAAAAATATCCAAGAGATGT+CGG - tig0023189:25127-25146 None:intergenic 30.0%
!!! CTCCTTTTTAGCTGTTTTTT+TGG + tig0023189:25184-25203 Msa1406110:intron 30.0%
ACCCAAAAAAACAGCTAAAA+AGG - tig0023189:25189-25208 None:intergenic 30.0%
!!! TTTTTAGCTGTTTTTTTGGG+TGG + tig0023189:25188-25207 Msa1406110:intron 30.0%
!! AATGATGGATTTCGAAACTA+AGG + tig0023189:25485-25504 Msa1406110:intron 30.0%
CTCTTAAAAGTAGCATTAGA+AGG + tig0023189:25991-26010 Msa1406110:CDS 30.0%
GAAACTGAATTATTACTGTG+TGG - tig0023189:26017-26036 None:intergenic 30.0%
TCGATATCAGCTGTAATAAA+AGG + tig0023189:26194-26213 Msa1406110:intron 30.0%
GTATAATAGTACGAAGAGAA+AGG - tig0023189:26225-26244 None:intergenic 30.0%
!!! CCCGATTTTATTTTATTGTC+AGG + tig0023189:26269-26288 Msa1406110:intron 30.0%
! TATTTTATTGTCAGGACACA+TGG + tig0023189:26277-26296 Msa1406110:intron 30.0%
! ATTTTATTGTCAGGACACAT+GGG + tig0023189:26278-26297 Msa1406110:intron 30.0%
! TGGAATTTTATGATGAAGCA+AGG + tig0023189:26775-26794 Msa1406110:intron 30.0%
! AAGGCATCCTCTAATTATAA+AGG - tig0023189:27021-27040 None:intergenic 30.0%
AGAATAGGAACAATGATAGA+GGG - tig0023189:27045-27064 None:intergenic 30.0%
TAGAATAGGAACAATGATAG+AGG - tig0023189:27046-27065 None:intergenic 30.0%
AGAAACCGTTAATATTACAG+GGG - tig0023189:27202-27221 None:intergenic 30.0%
CAGAAACCGTTAATATTACA+GGG - tig0023189:27203-27222 None:intergenic 30.0%
! TACAAAATTGATGATATGCC+AGG + tig0023189:27308-27327 Msa1406110:intron 30.0%
! ACAAAATTGATGATATGCCA+GGG + tig0023189:27309-27328 Msa1406110:intron 30.0%
!! ACATCTTTAGGATAATCCAA+GGG + tig0023189:27549-27568 Msa1406110:intron 30.0%
CATGTTTATTACTACAGTCT+AGG - tig0023189:27685-27704 None:intergenic 30.0%
ATACCATGTAGAAAGTAATG+GGG - tig0023189:27718-27737 None:intergenic 30.0%
GATACCATGTAGAAAGTAAT+GGG - tig0023189:27719-27738 None:intergenic 30.0%
TGATACCATGTAGAAAGTAA+TGG - tig0023189:27720-27739 None:intergenic 30.0%
ATCCTCAACAGATCTATATA+TGG - tig0023189:27746-27765 None:intergenic 30.0%
!! GAATTTTAACATATCCTCTC+AGG - tig0023189:27827-27846 None:intergenic 30.0%
AGTTATATCTCTTCCAATGT+GGG - tig0023189:27849-27868 None:intergenic 30.0%
AAGTTATATCTCTTCCAATG+TGG - tig0023189:27850-27869 None:intergenic 30.0%
TAATCTCTATGAACAAGGTA+AGG - tig0023189:28012-28031 None:intergenic 30.0%
CTACATAATCTCTATGAACA+AGG - tig0023189:28017-28036 None:intergenic 30.0%
! TTTAAGATGTGGTATCAACA+TGG - tig0023189:28121-28140 None:intergenic 30.0%
GACATGCAGTTTATATGAAT+AGG - tig0023189:28298-28317 None:intergenic 30.0%
TTATAGGACATGACATGATT+TGG + tig0023189:28455-28474 Msa1406110:intron 30.0%
!! AAGTGGTTTTGCAAAAGAAT+TGG + tig0023189:28570-28589 Msa1406110:intron 30.0%
TTGCAAAAGAATTGGTTGTT+AGG + tig0023189:28578-28597 Msa1406110:intron 30.0%
TGCAAAAGAATTGGTTGTTA+GGG + tig0023189:28579-28598 Msa1406110:intron 30.0%
! AGTTTTCTTCCAGTTTCAAT+TGG - tig0023189:28743-28762 None:intergenic 30.0%
TGAAACTGGAAGAAAACTAT+AGG + tig0023189:28745-28764 Msa1406110:intron 30.0%
CAACCAACTCATATAATAAC+AGG - tig0023189:28992-29011 None:intergenic 30.0%
CACGAAAACAAACAATAACA+AGG - tig0023189:29038-29057 None:intergenic 30.0%
!!! CTTGTTATTGTTTGTTTTCG+TGG + tig0023189:29036-29055 Msa1406110:intron 30.0%
ATATAGAATCAATTACAGGC+AGG - tig0023189:29069-29088 None:intergenic 30.0%
TTCAATTTACATTATCGCAC+AGG - tig0023189:29170-29189 None:intergenic 30.0%
TGAAGTTTCATTAAGACGTT+AGG + tig0023189:29186-29205 Msa1406110:three_prime_UTR 30.0%
GAAGTTTCATTAAGACGTTA+GGG + tig0023189:29187-29206 Msa1406110:three_prime_UTR 30.0%
ATCTTTAACACAACATCACT+CGG + tig0023189:29228-29247 Msa1406110:three_prime_UTR 30.0%
ATATATACACCAACATGTTG+CGG + tig0023189:29291-29310 Msa1406110:three_prime_UTR 30.0%
! AACAAATTGATGACAGGTAT+AGG - tig0023189:29368-29387 None:intergenic 30.0%
!!! TGACTAGGATTTCTTTTTTG+AGG + tig0023189:29552-29571 Msa1406110:three_prime_UTR 30.0%
GTGAAGAATGGTAGATTATG+CGG - tig0023189:24688-24707 None:intergenic 35.0%
! AAAGTGAGATTTGGAAGTGT+CGG - tig0023189:24835-24854 None:intergenic 35.0%
ATTCGACCTTATAACCTCAA+GGG - tig0023189:25091-25110 None:intergenic 35.0%
AATTCGACCTTATAACCTCA+AGG - tig0023189:25092-25111 None:intergenic 35.0%
!! GCATTTGTTGTTCTTCTAAG+AGG + tig0023189:25552-25571 Msa1406110:five_prime_UTR 35.0%
!! TTTGTTGTTCTTCTAAGAGG+AGG + tig0023189:25555-25574 Msa1406110:five_prime_UTR 35.0%
ATAACATCAGTTCTGCTCAT+TGG - tig0023189:25611-25630 None:intergenic 35.0%
! CTGATGTTATTTGCAGTAGA+AGG + tig0023189:25621-25640 Msa1406110:exon 35.0%
! ATGTTATTTGCAGTAGAAGG+TGG + tig0023189:25624-25643 Msa1406110:CDS 35.0%
TGGTGAAACATCATGTTGTT+GGG - tig0023189:25901-25920 None:intergenic 35.0%
AACAACATGATGTTTCACCA+GGG + tig0023189:25901-25920 Msa1406110:CDS 35.0%
TCCTTTCCATCATTAGAAAC+CGG - tig0023189:25930-25949 None:intergenic 35.0%
GTGTATGAATGAGATATGCT+AGG + tig0023189:26334-26353 Msa1406110:intron 35.0%
ATGAATGAGATATGCTAGGA+TGG + tig0023189:26338-26357 Msa1406110:intron 35.0%
TGCAGCGAATACAAAGATTT+GGG - tig0023189:26400-26419 None:intergenic 35.0%
TTGCAGCGAATACAAAGATT+TGG - tig0023189:26401-26420 None:intergenic 35.0%
!! AACTTCTAGCATTTAGCTTG+AGG + tig0023189:26435-26454 Msa1406110:intron 35.0%
! GTTTTACTTCAGAGAGATGA+AGG + tig0023189:26476-26495 Msa1406110:intron 35.0%
TATAGCTTTCCCAAGCTTTA+AGG + tig0023189:26530-26549 Msa1406110:intron 35.0%
TTCATTGGACCGATATCATT+TGG - tig0023189:26577-26596 None:intergenic 35.0%
GATCTACAAGTTTAATGGTC+CGG - tig0023189:26602-26621 None:intergenic 35.0%
! TTTTATGATGAAGCAAGGAG+TGG + tig0023189:26780-26799 Msa1406110:intron 35.0%
GATTAATGGCCATTGTAATC+TGG + tig0023189:26915-26934 Msa1406110:intron 35.0%
TCCAAGAAACCAGATTACAA+TGG - tig0023189:26927-26946 None:intergenic 35.0%
! TTGGAACTCGATTTAGAACT+AGG + tig0023189:26942-26961 Msa1406110:intron 35.0%
! AACTCGATTTAGAACTAGGA+AGG + tig0023189:26946-26965 Msa1406110:intron 35.0%
! TTTTCCTCCTTCTTCTTTCT+AGG + tig0023189:27122-27141 Msa1406110:intron 35.0%
TAGCATACCTAGAAAGAAGA+AGG - tig0023189:27132-27151 None:intergenic 35.0%
AAACCGTTAATATTACAGGG+GGG - tig0023189:27200-27219 None:intergenic 35.0%
GAAACCGTTAATATTACAGG+GGG - tig0023189:27201-27220 None:intergenic 35.0%
CCAGAAACCGTTAATATTAC+AGG - tig0023189:27204-27223 None:intergenic 35.0%
CCTGTAATATTAACGGTTTC+TGG + tig0023189:27201-27220 Msa1406110:intron 35.0%
! CAAAATTGATGATATGCCAG+GGG + tig0023189:27310-27329 Msa1406110:intron 35.0%
! AAAATTGATGATATGCCAGG+GGG + tig0023189:27311-27330 Msa1406110:intron 35.0%
! GGAAATTTGCTCAGATTACA+GGG + tig0023189:27339-27358 Msa1406110:intron 35.0%
! GAAATTTGCTCAGATTACAG+GGG + tig0023189:27340-27359 Msa1406110:intron 35.0%
AGAAACAACCAACATGGATT+TGG - tig0023189:27420-27439 None:intergenic 35.0%
CACTAAAGAAACAACCAACA+TGG - tig0023189:27426-27445 None:intergenic 35.0%
TTTGTGTTTGTGTCGAGATT+TGG + tig0023189:27492-27511 Msa1406110:intron 35.0%
TAAGTCTTTGCCACATCTTT+AGG + tig0023189:27537-27556 Msa1406110:intron 35.0%
CTTGGATTATCCTAAAGATG+TGG - tig0023189:27550-27569 None:intergenic 35.0%
!! CACATCTTTAGGATAATCCA+AGG + tig0023189:27548-27567 Msa1406110:intron 35.0%
ACATCAGTTGTCCTGTTTAT+TGG + tig0023189:27625-27644 Msa1406110:intron 35.0%
TTTCCCCATTACTTTCTACA+TGG + tig0023189:27712-27731 Msa1406110:intron 35.0%
AGCCATATATAGATCTGTTG+AGG + tig0023189:27741-27760 Msa1406110:intron 35.0%
CAAACCAGATTGTATTGTGA+GGG - tig0023189:27900-27919 None:intergenic 35.0%
TTACTCTTTGGTTGATCTGT+AGG + tig0023189:27938-27957 Msa1406110:intron 35.0%
CTTGTATATTGCCACTAGTT+TGG + tig0023189:27964-27983 Msa1406110:intron 35.0%
TGCATTTCATACCAAACTAG+TGG - tig0023189:27978-27997 None:intergenic 35.0%
TCTATGAACAAGGTAAGGTA+TGG - tig0023189:28007-28026 None:intergenic 35.0%
!! CAAATTTGCTGTAGTGTCAT+CGG + tig0023189:28052-28071 Msa1406110:intron 35.0%
!!! AGTACATGGGTTTTAAGATG+TGG - tig0023189:28132-28151 None:intergenic 35.0%
AGTACAACTCTACAAGCATT+AGG - tig0023189:28275-28294 None:intergenic 35.0%
ATCACCAATGTCAACGATAA+TGG - tig0023189:28349-28368 None:intergenic 35.0%
ATTATCGTTGACATTGGTGA+TGG + tig0023189:28348-28367 Msa1406110:CDS 35.0%
ATGGAATCTGTCCAAAAAAC+TGG + tig0023189:28367-28386 Msa1406110:CDS 35.0%
! TTGTTATTCTGGACCTGAAA+TGG + tig0023189:28431-28450 Msa1406110:CDS 35.0%
CATGTCCTATAAACCATTTC+AGG - tig0023189:28447-28466 None:intergenic 35.0%
TCTGTTGTTGCATATTGAAG+TGG + tig0023189:28553-28572 Msa1406110:intron 35.0%
!! TTTTGCATGCTATGTTGACT+TGG + tig0023189:28637-28656 Msa1406110:intron 35.0%
!! ATGCTATGTTGACTTGGAAA+AGG + tig0023189:28643-28662 Msa1406110:intron 35.0%
! TTGTTGCTTCTAGTTAAGTC+AGG + tig0023189:28714-28733 Msa1406110:intron 35.0%
! TGTTGCTTCTAGTTAAGTCA+GGG + tig0023189:28715-28734 Msa1406110:intron 35.0%
GAGTGATGTTGTGTTAAAGA+TGG - tig0023189:29229-29248 None:intergenic 35.0%
!!! GTGAAGATTTTTTGGTCCTT+TGG + tig0023189:29266-29285 Msa1406110:three_prime_UTR 35.0%
GTTGGTGTATATATCTCCAA+AGG - tig0023189:29285-29304 None:intergenic 35.0%
TATATACACCAACATGTTGC+GGG + tig0023189:29292-29311 Msa1406110:three_prime_UTR 35.0%
CATAACACAAATTCGTCAAC+AGG - tig0023189:29534-29553 None:intergenic 35.0%
GACGAATTTGTGTTATGACT+AGG + tig0023189:29537-29556 Msa1406110:three_prime_UTR 35.0%
!!! TTTTGAGGTATATCTGTTGC+AGG + tig0023189:29567-29586 Msa1406110:three_prime_UTR 35.0%
GATCGAAGAAGAACAAGAAG+AGG - tig0023189:24766-24785 None:intergenic 40.0%
GATTTGAACTTTGTCCCTTG+AGG + tig0023189:25074-25093 Msa1406110:intron 40.0%
CTTTGTCCCTTGAGGTTATA+AGG + tig0023189:25082-25101 Msa1406110:intron 40.0%
TGTCCTTGTCTTAGCTTAGA+AGG + tig0023189:25282-25301 Msa1406110:intron 40.0%
AAGCCTTCTAAGCTAAGACA+AGG - tig0023189:25288-25307 None:intergenic 40.0%
! TTTGAAGAGTGCAAGTGCAT+AGG + tig0023189:25424-25443 Msa1406110:intron 40.0%
TTATTTGCAGTAGAAGGTGG+AGG + tig0023189:25627-25646 Msa1406110:CDS 40.0%
ACTCCATCACCTCTTAAAGT+CGG + tig0023189:25870-25889 Msa1406110:CDS 40.0%
GAAACATCATGTTGTTGGGT+TGG - tig0023189:25897-25916 None:intergenic 40.0%
CTGGTGAAACATCATGTTGT+TGG - tig0023189:25902-25921 None:intergenic 40.0%
CAACAACATGATGTTTCACC+AGG + tig0023189:25900-25919 Msa1406110:CDS 40.0%
! ACCGGTTTCTAATGATGGAA+AGG + tig0023189:25926-25945 Msa1406110:CDS 40.0%
AAATACGAGAATTTGAGCCC+AGG + tig0023189:26153-26172 Msa1406110:CDS 40.0%
TTTAATGGTCCGGCATTCAT+TGG - tig0023189:26592-26611 None:intergenic 40.0%
TTTGTACACCTATGCGTAGA+AGG - tig0023189:26637-26656 None:intergenic 40.0%
! GCCATTGTAATCTGGTTTCT+TGG + tig0023189:26923-26942 Msa1406110:intron 40.0%
CATACCTAGAAAGAAGAAGG+AGG - tig0023189:27129-27148 None:intergenic 40.0%
TTGCCCCCCTGTAATATTAA+CGG + tig0023189:27194-27213 Msa1406110:intron 40.0%
! CGGAAATTTGCTCAGATTAC+AGG + tig0023189:27338-27357 Msa1406110:intron 40.0%
GTTCTACACCAAATCCATGT+TGG + tig0023189:27409-27428 Msa1406110:intron 40.0%
AGGACTAGACATCTCTAATG+TGG - tig0023189:27801-27820 None:intergenic 40.0%
ACATTAGAGATGTCTAGTCC+TGG + tig0023189:27800-27819 Msa1406110:intron 40.0%
CCAAACCAGATTGTATTGTG+AGG - tig0023189:27901-27920 None:intergenic 40.0%
CCTCACAATACAATCTGGTT+TGG + tig0023189:27898-27917 Msa1406110:intron 40.0%
GCAAATTGAGTGTTCACATG+CGG + tig0023189:28074-28093 Msa1406110:intron 40.0%
CAAATTGAGTGTTCACATGC+GGG + tig0023189:28075-28094 Msa1406110:intron 40.0%
AACATGGAAAAAGCCTAACC+AGG - tig0023189:28105-28124 None:intergenic 40.0%
AGCATTAGGCTGTAAAGCTT+CGG - tig0023189:28261-28280 None:intergenic 40.0%
AGCACCATTATCGTTGACAT+TGG + tig0023189:28342-28361 Msa1406110:CDS 40.0%
TCTGTCCAAAAAACTGGATG+TGG + tig0023189:28373-28392 Msa1406110:CDS 40.0%
CTGTCCAAAAAACTGGATGT+GGG + tig0023189:28374-28393 Msa1406110:CDS 40.0%
CCAGAATAACAAGTAAGCCA+AGG - tig0023189:28423-28442 None:intergenic 40.0%
!! CCTTGGCTTACTTGTTATTC+TGG + tig0023189:28420-28439 Msa1406110:CDS 40.0%
CTGGACCTGAAATGGTTTAT+AGG + tig0023189:28439-28458 Msa1406110:intron 40.0%
! ACATGACATGATTTGGAGAC+AGG + tig0023189:28462-28481 Msa1406110:intron 40.0%
ACTATTAACCAAACCTGCTC+AGG - tig0023189:28612-28631 None:intergenic 40.0%
CTTGGAAAAGGTTGTTACTG+TGG + tig0023189:28655-28674 Msa1406110:intron 40.0%
TCTGCCACATCAGCAAATTA+TGG + tig0023189:28686-28705 Msa1406110:intron 40.0%
CAAACAAGCTAACTGCAGTA+CGG - tig0023189:28907-28926 None:intergenic 40.0%
TAATGGTTGTCAACCTGTCA+GGG - tig0023189:28948-28967 None:intergenic 40.0%
TTAATGGTTGTCAACCTGTC+AGG - tig0023189:28949-28968 None:intergenic 40.0%
AAGACGTTAGGGTCATTCAT+CGG + tig0023189:29198-29217 Msa1406110:three_prime_UTR 40.0%
AAGAGGCGAGTAAACAGTAC+CGG - tig0023189:24749-24768 None:intergenic 45.0%
TCTTCGTTGCGATTTGTCGT+AGG + tig0023189:25051-25070 Msa1406110:intron 45.0%
CTTCGTTGCGATTTGTCGTA+GGG + tig0023189:25052-25071 Msa1406110:intron 45.0%
TGGAGGATTCTTCTCTGCTT+CGG + tig0023189:25644-25663 Msa1406110:CDS 45.0%
TCCTTTGACCCAAAAGGAGT+AGG - tig0023189:25695-25714 None:intergenic 45.0%
CCTCATTCCTTTGACCCAAA+AGG - tig0023189:25701-25720 None:intergenic 45.0%
!! CCTTTTGGGTCAAAGGAATG+AGG + tig0023189:25698-25717 Msa1406110:CDS 45.0%
!! ACCAACTGGTAATGGTTCCA+CGG - tig0023189:25744-25763 None:intergenic 45.0%
CTTGGTCTACCAACTGGTAA+TGG - tig0023189:25752-25771 None:intergenic 45.0%
CAGATTCTTGGTCTACCAAC+TGG - tig0023189:25758-25777 None:intergenic 45.0%
CTTCTTTCTGCTTGATCACC+AGG - tig0023189:26092-26111 None:intergenic 45.0%
CTGGTGATCAAGCAGAAAGA+AGG + tig0023189:26090-26109 Msa1406110:CDS 45.0%
GATATCGGTCCAATGAATGC+CGG + tig0023189:26580-26599 Msa1406110:intron 45.0%
GCGTAGAAGGAGTTGGATTA+AGG - tig0023189:26624-26643 None:intergenic 45.0%
ATCCAACTCCTTCTACGCAT+AGG + tig0023189:26626-26645 Msa1406110:intron 45.0%
! AAAGCTTGAGGAGAGGCATA+TGG - tig0023189:26817-26836 None:intergenic 45.0%
! TATGCCTCTCCTCAAGCTTT+TGG + tig0023189:26817-26836 Msa1406110:intron 45.0%
! ATGCCTCTCCTCAAGCTTTT+GGG + tig0023189:26818-26837 Msa1406110:intron 45.0%
!! AGCTTTTGGGTGTCTGTGAT+TGG + tig0023189:26831-26850 Msa1406110:intron 45.0%
!! TTTTGGGTGTCTGTGATTGG+AGG + tig0023189:26834-26853 Msa1406110:intron 45.0%
AGGAACAATGATAGAGGGCA+AGG - tig0023189:27040-27059 None:intergenic 45.0%
ATGATATGCCAGGGGGTAAA+CGG + tig0023189:27318-27337 Msa1406110:intron 45.0%
TGGCCTGAGTGGTTTGATAA+CGG - tig0023189:27781-27800 None:intergenic 45.0%
TAACATATCCTCTCAGGACC+AGG - tig0023189:27821-27840 None:intergenic 45.0%
GCATCCCTCACAATACAATC+TGG + tig0023189:27893-27912 Msa1406110:intron 45.0%
! GTCAACGATAATGGTGCTGA+AGG - tig0023189:28340-28359 None:intergenic 45.0%
!!! CCTTCCCACATCCAGTTTTT+TGG - tig0023189:28381-28400 None:intergenic 45.0%
CCAAAAAACTGGATGTGGGA+AGG + tig0023189:28378-28397 Msa1406110:CDS 45.0%
TGCAGCTATGGTGTTTACCT+TGG + tig0023189:28403-28422 Msa1406110:CDS 45.0%
! TGATTTGGAGACAGGCATGT+CGG + tig0023189:28470-28489 Msa1406110:intron 45.0%
!! GCTGCCATAATTTGCTGATG+TGG - tig0023189:28693-28712 None:intergenic 45.0%
GTCAGGGATCCAATTGAAAC+TGG + tig0023189:28731-28750 Msa1406110:intron 45.0%
TTGTCAACCTGTCAGGGTAT+AGG - tig0023189:28942-28961 None:intergenic 45.0%
ATCCACTTCACTGCAGTTGA+AGG - tig0023189:29104-29123 None:intergenic 45.0%
TTCAACTGCAGTGAAGTGGA+TGG + tig0023189:29103-29122 Msa1406110:intron 45.0%
AGACGTTAGGGTCATTCATC+GGG + tig0023189:29199-29218 Msa1406110:three_prime_UTR 45.0%
! GTCTCTACTATTGCTTGCTG+CGG + tig0023189:29328-29347 Msa1406110:three_prime_UTR 45.0%
!!! TAATTTGTTTTATTATTATT+TGG + tig0023189:24938-24957 Msa1406110:intron 5.0%
!!! AAAAAACATATATTTTTAAA+AGG - tig0023189:26364-26383 None:intergenic 5.0%
!! TTGTTTAATAAATATATATT+CGG - tig0023189:28867-28886 None:intergenic 5.0%
GAGTCGTCGGAGGAAAAACT+CGG - tig0023189:24661-24680 None:intergenic 50.0%
! GTTTTTCCTCCGACGACTCA+CGG + tig0023189:24662-24681 Msa1406110:five_prime_UTR 50.0%
! GGAGAATCAGAAGCACAGGT+CGG - tig0023189:24728-24747 None:intergenic 50.0%
GACCTGTGCTTCTGATTCTC+CGG + tig0023189:24727-24746 Msa1406110:five_prime_UTR 50.0%
! TACCGGAGAATCAGAAGCAC+AGG - tig0023189:24732-24751 None:intergenic 50.0%
ATCACTGAGCCGACATCTCT+TGG + tig0023189:25115-25134 Msa1406110:intron 50.0%
TTCTTCTCTGCTTCGGCTTC+AGG + tig0023189:25651-25670 Msa1406110:CDS 50.0%
TCTTCTCTGCTTCGGCTTCA+GGG + tig0023189:25652-25671 Msa1406110:CDS 50.0%
TTCGGCTTCAGGGTATAGCA+AGG + tig0023189:25662-25681 Msa1406110:CDS 50.0%
TCGGCTTCAGGGTATAGCAA+GGG + tig0023189:25663-25682 Msa1406110:CDS 50.0%
!! GCCTACTCCTTTTGGGTCAA+AGG + tig0023189:25691-25710 Msa1406110:CDS 50.0%
TTCCACGGTGCAACTCTCAT+GGG - tig0023189:25729-25748 None:intergenic 50.0%
ACCGTGGAACCATTACCAGT+TGG + tig0023189:25740-25759 Msa1406110:CDS 50.0%
GGAGTTGAGGGTCAGATTCT+TGG - tig0023189:25770-25789 None:intergenic 50.0%
GATTCTTTGTGGAAGCCAGC+TGG - tig0023189:25791-25810 None:intergenic 50.0%
ACAAAGAATCGCCTTTCCCG+CGG + tig0023189:25801-25820 Msa1406110:CDS 50.0%
TGTGCCTCCTTTGTCTGCTT+TGG + tig0023189:25825-25844 Msa1406110:CDS 50.0%
AGTGCGACCAAAGCAGACAA+AGG - tig0023189:25835-25854 None:intergenic 50.0%
! TGATGGAGTATCATGCCCTG+CGG - tig0023189:25859-25878 None:intergenic 50.0%
! GGTCCGACTTTAAGAGGTGA+TGG - tig0023189:25876-25895 None:intergenic 50.0%
!! TGGGTTGGTCCGACTTTAAG+AGG - tig0023189:25882-25901 None:intergenic 50.0%
TGATGTTTCACCAGGGCTAC+CGG + tig0023189:25908-25927 Msa1406110:CDS 50.0%
TCATTAGAAACCGGTAGCCC+TGG - tig0023189:25921-25940 None:intergenic 50.0%
!! GGGCTACCGGTTTCTAATGA+TGG + tig0023189:25921-25940 Msa1406110:CDS 50.0%
ACCAATGAGCAAGACGCATC+AGG + tig0023189:26047-26066 Msa1406110:CDS 50.0%
ACCTGATGCGTCTTGCTCAT+TGG - tig0023189:26051-26070 None:intergenic 50.0%
AATGAGCAAGACGCATCAGG+TGG + tig0023189:26050-26069 Msa1406110:CDS 50.0%
! GGACATGTCGTTTGTACTCC+TGG + tig0023189:26071-26090 Msa1406110:CDS 50.0%
! CAGAAAGAAGGAGAGTGCAG+TGG + tig0023189:26102-26121 Msa1406110:CDS 50.0%
CACCTATGCGTAGAAGGAGT+TGG - tig0023189:26631-26650 None:intergenic 50.0%
ACACCCAAAAGCTTGAGGAG+AGG - tig0023189:26824-26843 None:intergenic 50.0%
CACAGACACCCAAAAGCTTG+AGG - tig0023189:26829-26848 None:intergenic 50.0%
GCAAATTTCCGTTTACCCCC+TGG - tig0023189:27329-27348 None:intergenic 50.0%
!! CTGAGTGGTTTGATAACGGG+TGG - tig0023189:27777-27796 None:intergenic 50.0%
CACCCGTTATCAAACCACTC+AGG + tig0023189:27775-27794 Msa1406110:intron 50.0%
! GGCCTGAGTGGTTTGATAAC+GGG - tig0023189:27780-27799 None:intergenic 50.0%
CATCTCTAATGTGGCCTGAG+TGG - tig0023189:27792-27811 None:intergenic 50.0%
TGTTCACATGCGGGTATACC+TGG + tig0023189:28084-28103 Msa1406110:intron 50.0%
ACATGCGGGTATACCTGGTT+AGG + tig0023189:28089-28108 Msa1406110:intron 50.0%
TCCCCTAAGAAGCTCTTCAG+CGG + tig0023189:28170-28189 Msa1406110:intron 50.0%
AGCCGCTGAAGAGCTTCTTA+GGG - tig0023189:28175-28194 None:intergenic 50.0%
TGTGGGAAGGAATGCAGCTA+TGG + tig0023189:28391-28410 Msa1406110:CDS 50.0%
GATTTGGAGACAGGCATGTC+GGG + tig0023189:28471-28490 Msa1406110:intron 50.0%
CTAGTGCACAATTTGAGCCG+TGG + tig0023189:28501-28520 Msa1406110:intron 50.0%
AACCTGTCCTATACCCTGAC+AGG + tig0023189:28932-28951 Msa1406110:intron 50.0%
AACCTGTCAGGGTATAGGAC+AGG - tig0023189:28937-28956 None:intergenic 50.0%
CAATCACTCCCGCAACATGT+TGG - tig0023189:29303-29322 None:intergenic 50.0%
ATTATGCGGCCGTGAGTCGT+CGG - tig0023189:24674-24693 None:intergenic 55.0%
CGTGGATCGACGGTGAAGAA+TGG - tig0023189:24700-24719 None:intergenic 55.0%
! GAATCAGAAGCACAGGTCGG+CGG - tig0023189:24725-24744 None:intergenic 55.0%
! GGCCTGAGCCTACTCCTTTT+GGG + tig0023189:25684-25703 Msa1406110:CDS 55.0%
GACCCAAAAGGAGTAGGCTC+AGG - tig0023189:25689-25708 None:intergenic 55.0%
AACCCATGAGAGTTGCACCG+TGG + tig0023189:25724-25743 Msa1406110:CDS 55.0%
GTTCCACGGTGCAACTCTCA+TGG - tig0023189:25730-25749 None:intergenic 55.0%
ATCTGACCCTCAACTCCAGC+TGG + tig0023189:25773-25792 Msa1406110:CDS 55.0%
TGGAAGCCAGCTGGAGTTGA+GGG - tig0023189:25782-25801 None:intergenic 55.0%
GCGGGAAAGGCGATTCTTTG+TGG - tig0023189:25802-25821 None:intergenic 55.0%
CAAAGAATCGCCTTTCCCGC+GGG + tig0023189:25802-25821 Msa1406110:CDS 55.0%
GCGACCAAAGCAGACAAAGG+AGG - tig0023189:25832-25851 None:intergenic 55.0%
GTGCAGTGGACAGATGCTTG+CGG + tig0023189:26116-26135 Msa1406110:CDS 55.0%
TGAAGCAAGGAGTGGCGCTT+CGG + tig0023189:26788-26807 Msa1406110:intron 55.0%
TGTCTAGTCCTGGTCCTGAG+AGG + tig0023189:27810-27829 Msa1406110:intron 55.0%
GCCGCTGAAGAGCTTCTTAG+GGG - tig0023189:28174-28193 None:intergenic 55.0%
GAGCCGCTGAAGAGCTTCTT+AGG - tig0023189:28176-28195 None:intergenic 55.0%
AGGCAGCAAATCAGCACTGC+AGG - tig0023189:28320-28339 None:intergenic 55.0%
CCAAGTCCAACCATGCCTCA+CGG - tig0023189:28527-28546 None:intergenic 55.0%
TGAGGCATGGTTGGACTTGG+AGG + tig0023189:28527-28546 Msa1406110:intron 55.0%
GAGGCATGGTTGGACTTGGA+GGG + tig0023189:28528-28547 Msa1406110:intron 55.0%
AGGCATGGTTGGACTTGGAG+GGG + tig0023189:28529-28548 Msa1406110:intron 55.0%
TTAGGGCTGACTACCTGAGC+AGG + tig0023189:28596-28615 Msa1406110:intron 55.0%
GCTGACTACCTGAGCAGGTT+TGG + tig0023189:28601-28620 Msa1406110:intron 55.0%
! GGGCCTGAGCCTACTCCTTT+TGG + tig0023189:25683-25702 Msa1406110:CDS 60.0%
GTGGAAGCCAGCTGGAGTTG+AGG - tig0023189:25783-25802 None:intergenic 60.0%
! AGACAAAGGAGGCACACCCG+CGG - tig0023189:25821-25840 None:intergenic 60.0%
TGCTTTGGTCGCACTTCCGC+AGG + tig0023189:25840-25859 Msa1406110:CDS 60.0%
GCTTTGGTCGCACTTCCGCA+GGG + tig0023189:25841-25860 Msa1406110:CDS 60.0%
CAATTTGAGCCGTGGCCGTG+AGG + tig0023189:28509-28528 Msa1406110:intron 60.0%
CCGTGAGGCATGGTTGGACT+TGG + tig0023189:28524-28543 Msa1406110:intron 60.0%
! GACAAAGGAGGCACACCCGC+GGG - tig0023189:25820-25839 None:intergenic 65.0%
CCAACCATGCCTCACGGCCA+CGG - tig0023189:28521-28540 None:intergenic 65.0%
ATGCGGCCGTGAGTCGTCGG+AGG - tig0023189:24671-24690 None:intergenic 70.0%
! AGGAGGCACACCCGCGGGAA+AGG - tig0023189:25815-25834 None:intergenic 70.0%
TGAGCCGTGGCCGTGAGGCA+TGG + tig0023189:28514-28533 Msa1406110:intron 70.0%
CCGTGGCCGTGAGGCATGGT+TGG + tig0023189:28518-28537 Msa1406110:intron 70.0%
GTCGGCGGCGCGTGGATCGA+CGG - tig0023189:24710-24729 None:intergenic 75.0%
AAGCACAGGTCGGCGGCGCG+TGG - tig0023189:24718-24737 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0023189 gene 24600 29612 24600 ID=Msa1406110;Name=Msa1406110
tig0023189 mRNA 24600 29612 24600 ID=Msa1406110-mRNA-1;Parent=Msa1406110;Name=Msa1406110-mRNA-1;_AED=0.34;_eAED=0.34;_QI=227|0.33|0.75|0.75|0.33|0|4|429|249
tig0023189 exon 24600 24748 24600 ID=Msa1406110-mRNA-1:exon:24411;Parent=Msa1406110-mRNA-1
tig0023189 exon 25546 26174 25546 ID=Msa1406110-mRNA-1:exon:24412;Parent=Msa1406110-mRNA-1
tig0023189 exon 28324 28452 28324 ID=Msa1406110-mRNA-1:exon:24413;Parent=Msa1406110-mRNA-1
tig0023189 exon 29114 29612 29114 ID=Msa1406110-mRNA-1:exon:24414;Parent=Msa1406110-mRNA-1
tig0023189 five_prime_UTR 24600 24748 24600 ID=Msa1406110-mRNA-1:five_prime_utr;Parent=Msa1406110-mRNA-1
tig0023189 five_prime_UTR 25546 25623 25546 ID=Msa1406110-mRNA-1:five_prime_utr;Parent=Msa1406110-mRNA-1
tig0023189 CDS 25624 26174 25624 ID=Msa1406110-mRNA-1:cds;Parent=Msa1406110-mRNA-1
tig0023189 CDS 28324 28452 28324 ID=Msa1406110-mRNA-1:cds;Parent=Msa1406110-mRNA-1
tig0023189 CDS 29114 29183 29114 ID=Msa1406110-mRNA-1:cds;Parent=Msa1406110-mRNA-1
tig0023189 three_prime_UTR 29184 29612 29184 ID=Msa1406110-mRNA-1:three_prime_utr;Parent=Msa1406110-mRNA-1
Gene Sequence

>Msa1406110

ATGTTATTTGCAGTAGAAGGTGGAGGATTCTTCTCTGCTTCGGCTTCAGGGTATAGCAAGGGCCTGAGCCTACTCCTTTTGGGTCAAAGGAATGAGGATAAACCCATGAGAGTTGCACCGTGGAACCATTACCAGTTGGTAGACCAAGAATCTGACCCTCAACTCCAGCTGGCTTCCACAAAGAATCGCCTTTCCCGCGGGTGTGCCTCCTTTGTCTGCTTTGGTCGCACTTCCGCAGGGCATGATACTCCATCACCTCTTAAAGTCGGACCAACCCAACAACATGATGTTTCACCAGGGCTACCGGTTTCTAATGATGGAAAGGATCCCTCTCATATAGATGATAACAATGATGGTATAAAGGTCACTCTTAAAAGTAGCATTAGAAGGCCACACAGTAATAATTCAGTTTCTGTTGAGGCTACCAATGAGCAAGACGCATCAGGTGGACATGTCGTTTGTACTCCTGGTGATCAAGCAGAAAGAAGGAGAGTGCAGTGGACAGATGCTTGCGGTAGTGAGCTTGTTGAAATACGAGAATTTGAGCCCAGTGCTGATTTGCTGCCTTCAGCACCATTATCGTTGACATTGGTGATGGAATCTGTCCAAAAAACTGGATGTGGGAAGGAATGCAGCTATGGTGTTTACCTTGGCTTACTTGTTATTCTGGACCTGAAATGTGAAGTGGATGGATCAGATGATGAATATGATAATGGAAATGAGAGAACTTGTTCCTGTGCGATAATGTAA

Protein sequence

>Msa1406110

MLFAVEGGGFFSASASGYSKGLSLLLLGQRNEDKPMRVAPWNHYQLVDQESDPQLQLASTKNRLSRGCASFVCFGRTSAGHDTPSPLKVGPTQQHDVSPGLPVSNDGKDPSHIDDNNDGIKVTLKSSIRRPHSNNSVSVEATNEQDASGGHVVCTPGDQAERRRVQWTDACGSELVEIREFEPSADLLPSAPLSLTLVMESVQKTGCGKECSYGVYLGLLVILDLKCEVDGSDDEYDNGNERTCSCAIM*