AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0827350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827350 MtrunA17_Chr1g0201551 79.920 249 7 1 1 249 1 206 3.72e-139 389
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827350 AT1G22790.1 46.538 260 84 7 1 249 1 216 1.05e-61 193
Msa0827350 AT1G22790.2 46.538 260 84 7 1 249 1 216 1.05e-61 193
Msa0827350 AT1G34010.3 36.800 250 89 7 1 249 1 182 1.18e-41 140
Msa0827350 AT1G34010.1 36.800 250 89 7 1 249 1 182 1.18e-41 140
Msa0827350 AT1G34010.2 36.800 250 89 7 1 249 66 247 3.85e-41 141

Find 110 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGGCTTACTTGTTATTC+TGG 0.167627 5_3:-68519166 Msa0827350:CDS
TTCTTCTCTGCTTCGGCTTC+AGG 0.195978 5_3:-68521935 Msa0827350:CDS
GGGCCTGAGCCTACTCCTTT+TGG 0.208630 5_3:-68521903 Msa0827350:CDS
CATGTCCTATAAACCATTTC+AGG 0.267175 5_3:+68519142 None:intergenic
GGAGTTGAGGGTCAGATTCT+TGG 0.321871 5_3:+68521819 None:intergenic
TGAAGTTTCATTAAGACGTT+AGG 0.331449 5_3:-68518400 Msa0827350:three_prime_UTR
CTTCTTTCTGCTTGATCACC+AGG 0.334073 5_3:+68521497 None:intergenic
TGCTTTGGTCGCACTTCCGC+AGG 0.348461 5_3:-68521746 Msa0827350:CDS
ATCACCAATGTCAACGATAA+TGG 0.368141 5_3:+68519240 None:intergenic
TTGTTATTCTGGACCTGAAA+TGG 0.369570 5_3:-68519155 Msa0827350:intron
CTGATGTTATTTGCAGTAGA+AGG 0.376579 5_3:-68521965 Msa0827350:CDS
TGTGCCTCCTTTGTCTGCTT+TGG 0.387522 5_3:-68521761 Msa0827350:CDS
CTTGGTCTACCAACTGGTAA+TGG 0.398010 5_3:+68521837 None:intergenic
TGGAGGATTCTTCTCTGCTT+CGG 0.400442 5_3:-68521942 Msa0827350:CDS
TCAGATGATGAATATGATAA+TGG 0.406348 5_3:-68518459 Msa0827350:CDS
TCTTCTCTGCTTCGGCTTCA+GGG 0.410976 5_3:-68521934 Msa0827350:CDS
ACCTGATGCGTCTTGCTCAT+TGG 0.415636 5_3:+68521538 None:intergenic
GCGGGAAAGGCGATTCTTTG+TGG 0.428089 5_3:+68521787 None:intergenic
CATAACACAAATTCGTCAAC+AGG 0.436878 5_3:+68518055 None:intergenic
CCTCATTCCTTTGACCCAAA+AGG 0.437528 5_3:+68521888 None:intergenic
AACAAATTGATGACAGGTAT+AGG 0.442079 5_3:+68518221 None:intergenic
TGATAACAATGATGGTATAA+AGG 0.444241 5_3:-68521621 Msa0827350:CDS
GCATTTGTTGTTCTTCTAAG+AGG 0.444468 5_3:-68522034 Msa0827350:five_prime_UTR
TCCTTTCCATCATTAGAAAC+CGG 0.451042 5_3:+68521659 None:intergenic
TGCAGCTATGGTGTTTACCT+TGG 0.453966 5_3:-68519183 Msa0827350:CDS
TGGAAGCCAGCTGGAGTTGA+GGG 0.459813 5_3:+68521807 None:intergenic
TGGTGAAACATCATGTTGTT+GGG 0.460560 5_3:+68521688 None:intergenic
ACCAATGAGCAAGACGCATC+AGG 0.466072 5_3:-68521539 Msa0827350:CDS
AGACGTTAGGGTCATTCATC+GGG 0.469465 5_3:-68518387 Msa0827350:three_prime_UTR
TATAAATTAAGTCCATGTTC+CGG 0.470758 5_3:-68517996 Msa0827350:three_prime_UTR
CAGATTCTTGGTCTACCAAC+TGG 0.473927 5_3:+68521831 None:intergenic
ATAACATCAGTTCTGCTCAT+TGG 0.474198 5_3:+68521978 None:intergenic
AGGAGGCACACCCGCGGGAA+AGG 0.474287 5_3:+68521774 None:intergenic
CTCTTAAAAGTAGCATTAGA+AGG 0.478292 5_3:-68521595 Msa0827350:CDS
GTTCCACGGTGCAACTCTCA+TGG 0.480426 5_3:+68521859 None:intergenic
TGGGTTGGTCCGACTTTAAG+AGG 0.483807 5_3:+68521707 None:intergenic
GGGCTACCGGTTTCTAATGA+TGG 0.487640 5_3:-68521665 Msa0827350:CDS
GTGGAAGCCAGCTGGAGTTG+AGG 0.488108 5_3:+68521806 None:intergenic
CAACAACATGATGTTTCACC+AGG 0.491096 5_3:-68521686 Msa0827350:CDS
CTGGTGAAACATCATGTTGT+TGG 0.491892 5_3:+68521687 None:intergenic
ATAAAACAATTGCCGGAACA+TGG 0.498814 5_3:+68517984 None:intergenic
TTCAATTTACATTATCGCAC+AGG 0.500378 5_3:+68518419 None:intergenic
ATCTGACCCTCAACTCCAGC+TGG 0.500906 5_3:-68521813 Msa0827350:CDS
GGACATGTCGTTTGTACTCC+TGG 0.502337 5_3:-68521515 Msa0827350:CDS
GAAGTTTCATTAAGACGTTA+GGG 0.506913 5_3:-68518399 Msa0827350:three_prime_UTR
GTCGGCGGCGCGTGGATCGA+CGG 0.510656 5_3:+68522879 None:intergenic
TGATGTTTCACCAGGGCTAC+CGG 0.511052 5_3:-68521678 Msa0827350:CDS
AAGACGTTAGGGTCATTCAT+CGG 0.512007 5_3:-68518388 Msa0827350:three_prime_UTR
TTCCTTCAACTGCAGTGAAG+TGG 0.515417 5_3:-68518487 Msa0827350:intron
GACAAAGGAGGCACACCCGC+GGG 0.516351 5_3:+68521769 None:intergenic
CATATAGATGATAACAATGA+TGG 0.521660 5_3:-68521629 Msa0827350:CDS
TCATTAGAAACCGGTAGCCC+TGG 0.527877 5_3:+68521668 None:intergenic
GATTCTTTGTGGAAGCCAGC+TGG 0.528710 5_3:+68521798 None:intergenic
GACCTGTGCTTCTGATTCTC+CGG 0.532469 5_3:-68522859 Msa0827350:intron
TTATTTGCAGTAGAAGGTGG+AGG 0.532906 5_3:-68521959 Msa0827350:CDS
GACCCAAAAGGAGTAGGCTC+AGG 0.534302 5_3:+68521900 None:intergenic
CTGGTGATCAAGCAGAAAGA+AGG 0.536495 5_3:-68521496 Msa0827350:CDS
TATATACACCAACATGTTGT+GGG 0.536547 5_3:-68518294 Msa0827350:three_prime_UTR
CGTGGATCGACGGTGAAGAA+TGG 0.539299 5_3:+68522889 None:intergenic
AAGCACAGGTCGGCGGCGCG+TGG 0.540061 5_3:+68522871 None:intergenic
GAAACATCATGTTGTTGGGT+TGG 0.541784 5_3:+68521692 None:intergenic
ATCTTTAACACAACATCACT+CGG 0.541788 5_3:-68518358 Msa0827350:three_prime_UTR
AGCACCATTATCGTTGACAT+TGG 0.544239 5_3:-68519244 Msa0827350:CDS
ATTATCGTTGACATTGGTGA+TGG 0.545602 5_3:-68519238 Msa0827350:CDS
ATGAACTAAATACTATGCTA+TGG 0.549688 5_3:-68518131 Msa0827350:three_prime_UTR
TTCCACGGTGCAACTCTCAT+GGG 0.559762 5_3:+68521860 None:intergenic
GTCAACGATAATGGTGCTGA+AGG 0.560710 5_3:+68519249 None:intergenic
AGACAAAGGAGGCACACCCG+CGG 0.568338 5_3:+68521768 None:intergenic
CAAAGAATCGCCTTTCCCGC+GGG 0.568676 5_3:-68521784 Msa0827350:CDS
TTCGGCTTCAGGGTATAGCA+AGG 0.570156 5_3:-68521924 Msa0827350:CDS
GGTCCGACTTTAAGAGGTGA+TGG 0.570924 5_3:+68521713 None:intergenic
TACCGGAGAATCAGAAGCAC+AGG 0.572060 5_3:+68522857 None:intergenic
ATGTTATTTGCAGTAGAAGG+TGG 0.573304 5_3:-68521962 Msa0827350:CDS
TAATAATTCAGTTTCTGTTG+AGG 0.576147 5_3:-68521564 Msa0827350:CDS
ACCAACTGGTAATGGTTCCA+CGG 0.576625 5_3:+68521845 None:intergenic
ACCGGTTTCTAATGATGGAA+AGG 0.577810 5_3:-68521660 Msa0827350:CDS
GCTTTGGTCGCACTTCCGCA+GGG 0.579792 5_3:-68521745 Msa0827350:CDS
GAGTGATGTTGTGTTAAAGA+TGG 0.580276 5_3:+68518360 None:intergenic
GTCTCTACTATTGCTTGCTG+CGG 0.582044 5_3:-68518258 Msa0827350:three_prime_UTR
ATTATGCGGCCGTGAGTCGT+CGG 0.587617 5_3:+68522915 None:intergenic
ACAAAGAATCGCCTTTCCCG+CGG 0.591445 5_3:-68521785 Msa0827350:CDS
TTCAACTGCAGTGAAGTGGA+TGG 0.592726 5_3:-68518483 Msa0827350:intron
ATATATACACCAACATGTTG+TGG 0.596459 5_3:-68518295 Msa0827350:three_prime_UTR
TCCTTTGACCCAAAAGGAGT+AGG 0.598947 5_3:+68521894 None:intergenic
TGTGGGAAGGAATGCAGCTA+TGG 0.599320 5_3:-68519195 Msa0827350:CDS
TTTGTTGTTCTTCTAAGAGG+AGG 0.605961 5_3:-68522031 Msa0827350:five_prime_UTR
TTATACAACAAATTGATGAC+AGG 0.608212 5_3:+68518215 None:intergenic
GAATCAGAAGCACAGGTCGG+CGG 0.612402 5_3:+68522864 None:intergenic
AAATACGAGAATTTGAGCCC+AGG 0.614035 5_3:-68521433 Msa0827350:intron
CCAGAATAACAAGTAAGCCA+AGG 0.616750 5_3:+68519166 None:intergenic
CAGAAAGAAGGAGAGTGCAG+TGG 0.619006 5_3:-68521484 Msa0827350:CDS
TTGTTATCATCTATATGAGA+GGG 0.619691 5_3:+68521635 None:intergenic
TCGGCTTCAGGGTATAGCAA+GGG 0.629191 5_3:-68521923 Msa0827350:CDS
GTTGGTGTATATATCTCCAA+AGG 0.630828 5_3:+68518304 None:intergenic
ATTGTTATCATCTATATGAG+AGG 0.632848 5_3:+68521634 None:intergenic
ACCGTGGAACCATTACCAGT+TGG 0.634769 5_3:-68521846 Msa0827350:CDS
AGTGCGACCAAAGCAGACAA+AGG 0.639795 5_3:+68521754 None:intergenic
CAATCACTCCCACAACATGT+TGG 0.646410 5_3:+68518286 None:intergenic
GTGAAGAATGGTAGATTATG+CGG 0.646865 5_3:+68522901 None:intergenic
ACTCCATCACCTCTTAAAGT+CGG 0.647699 5_3:-68521716 Msa0827350:CDS
ATGCGGCCGTGAGTCGTCGG+AGG 0.658910 5_3:+68522918 None:intergenic
GCGACCAAAGCAGACAAAGG+AGG 0.660173 5_3:+68521757 None:intergenic
AATGAGCAAGACGCATCAGG+TGG 0.664133 5_3:-68521536 Msa0827350:CDS
GACGAATTTGTGTTATGACT+AGG 0.666824 5_3:-68518049 Msa0827350:three_prime_UTR
GAAACTGAATTATTACTGTG+TGG 0.674445 5_3:+68521572 None:intergenic
GTGCAGTGGACAGATGCTTG+CGG 0.709323 5_3:-68521470 Msa0827350:CDS
GGAGAATCAGAAGCACAGGT+CGG 0.727041 5_3:+68522861 None:intergenic
AACAACATGATGTTTCACCA+GGG 0.731260 5_3:-68521685 Msa0827350:CDS
TGATGGAGTATCATGCCCTG+CGG 0.746184 5_3:+68521730 None:intergenic
AACCCATGAGAGTTGCACCG+TGG 0.749362 5_3:-68521862 Msa0827350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTATTATTTGGTTTTT+TGG - chr5_3:68518342-68518361 Msa0827350:three_prime_UTR 10.0%
!! TGATATATAAAAATCATTTA+TGG - chr5_3:68518977-68518996 Msa0827350:intron 10.0%
!! TTTATGCAAAAAAAAAAAAA+GGG - chr5_3:68520556-68520575 Msa0827350:intron 10.0%
!!! TAAACAATTTTTTTTTTACA+GGG + chr5_3:68520629-68520648 None:intergenic 10.0%
!!! ATGATTATTTTGTTATCTTA+TGG - chr5_3:68518757-68518776 Msa0827350:intron 15.0%
!! TTTAAAAGATATGAAAATGA+TGG - chr5_3:68518866-68518885 Msa0827350:intron 15.0%
!! AATAAAATATTCAAATACCT+GGG + chr5_3:68519569-68519588 None:intergenic 15.0%
!! AAATAAAATATTCAAATACC+TGG + chr5_3:68519570-68519589 None:intergenic 15.0%
!!! TATTATACATTTTAGATTAG+AGG - chr5_3:68519633-68519652 Msa0827350:intron 15.0%
!!! TAATTTCTTTTGATCTATTT+TGG - chr5_3:68520151-68520170 Msa0827350:intron 15.0%
!!! AGGTGAATAATAATAAATTT+TGG - chr5_3:68520250-68520269 Msa0827350:intron 15.0%
!!! GGTGAATAATAATAAATTTT+GGG - chr5_3:68520251-68520270 Msa0827350:intron 15.0%
!! TTTATATGATGTTTGATTAA+TGG - chr5_3:68520297-68520316 Msa0827350:intron 15.0%
!! AAAAATGATCATAATAGAAT+AGG + chr5_3:68520456-68520475 None:intergenic 15.0%
!! GTTTATGCAAAAAAAAAAAA+AGG - chr5_3:68520555-68520574 Msa0827350:intron 15.0%
!!! AAACAATTTTTTTTTTACAG+GGG + chr5_3:68520628-68520647 None:intergenic 15.0%
!!! CTAAACAATTTTTTTTTTAC+AGG + chr5_3:68520630-68520649 None:intergenic 15.0%
!! AAATACAAATCAAATCAAAT+GGG + chr5_3:68520993-68521012 None:intergenic 15.0%
!! TAAATACAAATCAAATCAAA+TGG + chr5_3:68520994-68521013 None:intergenic 15.0%
!! TTGAAAAAATGTTTATAAGT+AGG - chr5_3:68521264-68521283 Msa0827350:intron 15.0%
!! AGCATAAATGAATTACTTTA+TGG - chr5_3:68518557-68518576 Msa0827350:intron 20.0%
!!! TTACATATTCAACATGTTTT+TGG - chr5_3:68518610-68518629 Msa0827350:intron 20.0%
!!! ATCTGATTATTGATTTCTTT+TGG - chr5_3:68518911-68518930 Msa0827350:intron 20.0%
!! TCCTGACAATAAAATAAAAT+CGG + chr5_3:68519669-68519688 None:intergenic 20.0%
!!! ATCAAACAAAATAAAGTATC+AGG + chr5_3:68519702-68519721 None:intergenic 20.0%
!! TTGTAAATTCCAAATGATAT+CGG - chr5_3:68519961-68519980 Msa0827350:intron 20.0%
!!! AGTTGTCTTTAATTTTCAAA+TGG + chr5_3:68520070-68520089 None:intergenic 20.0%
!! AGAAATTAATTCAAATTTGC+AGG + chr5_3:68520139-68520158 None:intergenic 20.0%
!!! ATTTTATTTTCCGATTTGTT+TGG - chr5_3:68520378-68520397 Msa0827350:intron 20.0%
!! AAAACAAAAACCAAACAAAT+CGG + chr5_3:68520391-68520410 None:intergenic 20.0%
!!! TTTTTGACCTTTATAATTAG+AGG - chr5_3:68520407-68520426 Msa0827350:intron 20.0%
!!! AACAATTTTTTTTTTACAGG+GGG + chr5_3:68520627-68520646 None:intergenic 20.0%
!!! CAAAGAATTTTCAAATTACA+AGG + chr5_3:68520660-68520679 None:intergenic 20.0%
!! TATTGTTGAACGTAATAAAT+TGG + chr5_3:68520915-68520934 None:intergenic 20.0%
!! AAAAAATGTTTATAAGTAGG+AGG - chr5_3:68521267-68521286 Msa0827350:intron 20.0%
!! ATTATGTAGAATACATAACA+TGG - chr5_3:68521424-68521443 Msa0827350:intron 20.0%
!!! AAGAATGAAAAAAAGTACAT+GGG + chr5_3:68521541-68521560 None:intergenic 20.0%
!!! AAAGAATGAAAAAAAGTACA+TGG + chr5_3:68521542-68521561 None:intergenic 20.0%
!! ACTAGAATAGAAAAAGTTTA+TGG - chr5_3:68522170-68522189 Msa0827350:intron 20.0%
!! TATCATATAGAATCAATTAC+AGG + chr5_3:68522469-68522488 None:intergenic 20.0%
!!! TCCTTTTTAGCTGTTTTTTT+GGG - chr5_3:68518581-68518600 Msa0827350:intron 25.0%
!!! GTCTTAAAGTGTTTTTTGTT+TGG - chr5_3:68518654-68518673 Msa0827350:intron 25.0%
!!! TTGATTTCTTTTGGTTGAAA+AGG - chr5_3:68518920-68518939 Msa0827350:intron 25.0%
! TTGTTATCATCTATATGAGA+GGG + chr5_3:68519350-68519369 None:intergenic 25.0%
! ATTGTTATCATCTATATGAG+AGG + chr5_3:68519351-68519370 None:intergenic 25.0%
! CATATAGATGATAACAATGA+TGG - chr5_3:68519353-68519372 Msa0827350:intron 25.0%
! TGATAACAATGATGGTATAA+AGG - chr5_3:68519361-68519380 Msa0827350:intron 25.0%
! TAATAATTCAGTTTCTGTTG+AGG - chr5_3:68519418-68519437 Msa0827350:intron 25.0%
! CCTGACAATAAAATAAAATC+GGG + chr5_3:68519668-68519687 None:intergenic 25.0%
! TGTAAAATTCCTTAAAGCTT+GGG + chr5_3:68519938-68519957 None:intergenic 25.0%
! ATGTAAAATTCCTTAAAGCT+TGG + chr5_3:68519939-68519958 None:intergenic 25.0%
! TTAAGGATCTACAAGTTTAA+TGG + chr5_3:68520003-68520022 None:intergenic 25.0%
!! TGTTGTTTATAAACTTCTTG+AGG + chr5_3:68520486-68520505 None:intergenic 25.0%
!! GAATTTTCAAATTACAAGGT+TGG + chr5_3:68520656-68520675 None:intergenic 25.0%
! TTTGTAGTCAAAATTCATGA+AGG + chr5_3:68520690-68520709 None:intergenic 25.0%
! GAAGATCATAAAAGTAATAC+AGG + chr5_3:68520851-68520870 None:intergenic 25.0%
! TAAGATAAAATCAAATCCCT+TGG + chr5_3:68520964-68520983 None:intergenic 25.0%
! TAAATGATGTTCCAATAAAC+AGG + chr5_3:68521035-68521054 None:intergenic 25.0%
! ATATGTTAAAATTCCCACAT+TGG - chr5_3:68521229-68521248 Msa0827350:intron 25.0%
! TTGAATTAAGCATTACTCTT+TGG - chr5_3:68521322-68521341 Msa0827350:intron 25.0%
!! TTTTACATTTGATTGATCTG+TGG + chr5_3:68521606-68521625 None:intergenic 25.0%
! TTAGAAGCAGTATTTAACAT+TGG + chr5_3:68521631-68521650 None:intergenic 25.0%
! AATTACTTTCAATCAAGTCT+TGG + chr5_3:68522197-68522216 None:intergenic 25.0%
! GACTTGATTGAAAGTAATTT+AGG - chr5_3:68522198-68522217 Msa0827350:intron 25.0%
! CTATATGCTTGCATAATATT+GGG + chr5_3:68522237-68522256 None:intergenic 25.0%
! ACTATATGCTTGCATAATAT+TGG + chr5_3:68522238-68522257 None:intergenic 25.0%
! ACAGCATATACACAAATTAA+TGG + chr5_3:68522361-68522380 None:intergenic 25.0%
! ATACCTGTTATTATATGAGT+TGG - chr5_3:68522382-68522401 Msa0827350:intron 25.0%
! TCAGATGATGAATATGATAA+TGG - chr5_3:68522523-68522542 Msa0827350:intron 25.0%
!!! CAAAATGAGTGAAGATTTTT+TGG - chr5_3:68522654-68522673 Msa0827350:intron 25.0%
!! TTATACAACAAATTGATGAC+AGG + chr5_3:68522770-68522789 None:intergenic 25.0%
! ATGAACTAAATACTATGCTA+TGG - chr5_3:68522851-68522870 Msa0827350:intron 25.0%
!!! TATTTTGTAAAGTATCACTG+TGG - chr5_3:68522901-68522920 Msa0827350:five_prime_UTR 25.0%
AAAGAAAGCAAAGTGAGATT+TGG + chr5_3:68518240-68518259 None:intergenic 30.0%
CAAAAATATCCAAGAGATGT+CGG + chr5_3:68518523-68518542 None:intergenic 30.0%
!!! CTCCTTTTTAGCTGTTTTTT+TGG - chr5_3:68518580-68518599 Msa0827350:intron 30.0%
ACCCAAAAAAACAGCTAAAA+AGG + chr5_3:68518585-68518604 None:intergenic 30.0%
!!! TTTTTAGCTGTTTTTTTGGG+TGG - chr5_3:68518584-68518603 Msa0827350:intron 30.0%
!! AATGATGGATTTCGAAACTA+AGG - chr5_3:68518881-68518900 Msa0827350:intron 30.0%
CTCTTAAAAGTAGCATTAGA+AGG - chr5_3:68519387-68519406 Msa0827350:intron 30.0%
GAAACTGAATTATTACTGTG+TGG + chr5_3:68519413-68519432 None:intergenic 30.0%
TCGATATCAGCTGTAATAAA+AGG - chr5_3:68519590-68519609 Msa0827350:intron 30.0%
GTATAATAGTACGAAGAGAA+AGG + chr5_3:68519621-68519640 None:intergenic 30.0%
!!! CCCGATTTTATTTTATTGTC+AGG - chr5_3:68519665-68519684 Msa0827350:intron 30.0%
! TATTTTATTGTCAGGACACA+TGG - chr5_3:68519673-68519692 Msa0827350:intron 30.0%
! ATTTTATTGTCAGGACACAT+GGG - chr5_3:68519674-68519693 Msa0827350:intron 30.0%
! TGGAATTTTATGATGAAGCA+AGG - chr5_3:68520171-68520190 Msa0827350:intron 30.0%
! AAGGCATCCTCTAATTATAA+AGG + chr5_3:68520417-68520436 None:intergenic 30.0%
AGAATAGGAACAATGATAGA+GGG + chr5_3:68520441-68520460 None:intergenic 30.0%
TAGAATAGGAACAATGATAG+AGG + chr5_3:68520442-68520461 None:intergenic 30.0%
AGAAACCGTTAATATTACAG+GGG + chr5_3:68520598-68520617 None:intergenic 30.0%
CAGAAACCGTTAATATTACA+GGG + chr5_3:68520599-68520618 None:intergenic 30.0%
! TACAAAATTGATGATATGCC+AGG - chr5_3:68520704-68520723 Msa0827350:intron 30.0%
! ACAAAATTGATGATATGCCA+GGG - chr5_3:68520705-68520724 Msa0827350:intron 30.0%
!! ACATCTTTAGGATAATCCAA+GGG - chr5_3:68520945-68520964 Msa0827350:intron 30.0%
CATGTTTATTACTACAGTCT+AGG + chr5_3:68521081-68521100 None:intergenic 30.0%
ATACCATGTAGAAAGTAATG+GGG + chr5_3:68521114-68521133 None:intergenic 30.0%
GATACCATGTAGAAAGTAAT+GGG + chr5_3:68521115-68521134 None:intergenic 30.0%
TGATACCATGTAGAAAGTAA+TGG + chr5_3:68521116-68521135 None:intergenic 30.0%
ATCCTCAACAGATCTATATA+TGG + chr5_3:68521142-68521161 None:intergenic 30.0%
!! GAATTTTAACATATCCTCTC+AGG + chr5_3:68521223-68521242 None:intergenic 30.0%
AGTTATATCTCTTCCAATGT+GGG + chr5_3:68521245-68521264 None:intergenic 30.0%
AAGTTATATCTCTTCCAATG+TGG + chr5_3:68521246-68521265 None:intergenic 30.0%
TAATCTCTATGAACAAGGTA+AGG + chr5_3:68521408-68521427 None:intergenic 30.0%
CTACATAATCTCTATGAACA+AGG + chr5_3:68521413-68521432 None:intergenic 30.0%
! TTTAAGATGTGGTATCAACA+TGG + chr5_3:68521517-68521536 None:intergenic 30.0%
GACATGCAGTTTATATGAAT+AGG + chr5_3:68521694-68521713 None:intergenic 30.0%
TTATAGGACATGACATGATT+TGG - chr5_3:68521851-68521870 Msa0827350:CDS 30.0%
!! AAGTGGTTTTGCAAAAGAAT+TGG - chr5_3:68521966-68521985 Msa0827350:exon 30.0%
TTGCAAAAGAATTGGTTGTT+AGG - chr5_3:68521974-68521993 Msa0827350:exon 30.0%
TGCAAAAGAATTGGTTGTTA+GGG - chr5_3:68521975-68521994 Msa0827350:exon 30.0%
! AGTTTTCTTCCAGTTTCAAT+TGG + chr5_3:68522139-68522158 None:intergenic 30.0%
TGAAACTGGAAGAAAACTAT+AGG - chr5_3:68522141-68522160 Msa0827350:intron 30.0%
CAACCAACTCATATAATAAC+AGG + chr5_3:68522388-68522407 None:intergenic 30.0%
CACGAAAACAAACAATAACA+AGG + chr5_3:68522434-68522453 None:intergenic 30.0%
!!! CTTGTTATTGTTTGTTTTCG+TGG - chr5_3:68522432-68522451 Msa0827350:intron 30.0%
ATATAGAATCAATTACAGGC+AGG + chr5_3:68522465-68522484 None:intergenic 30.0%
TTCAATTTACATTATCGCAC+AGG + chr5_3:68522566-68522585 None:intergenic 30.0%
TGAAGTTTCATTAAGACGTT+AGG - chr5_3:68522582-68522601 Msa0827350:intron 30.0%
GAAGTTTCATTAAGACGTTA+GGG - chr5_3:68522583-68522602 Msa0827350:intron 30.0%
ATCTTTAACACAACATCACT+CGG - chr5_3:68522624-68522643 Msa0827350:intron 30.0%
ATATATACACCAACATGTTG+TGG - chr5_3:68522687-68522706 Msa0827350:intron 30.0%
TATATACACCAACATGTTGT+GGG - chr5_3:68522688-68522707 Msa0827350:intron 30.0%
! AACAAATTGATGACAGGTAT+AGG + chr5_3:68522764-68522783 None:intergenic 30.0%
!!! TGACTAGGATTTCTTTTTTG+AGG - chr5_3:68522948-68522967 Msa0827350:five_prime_UTR 30.0%
GTGAAGAATGGTAGATTATG+CGG + chr5_3:68518084-68518103 None:intergenic 35.0%
! AAAGTGAGATTTGGAAGTGT+CGG + chr5_3:68518231-68518250 None:intergenic 35.0%
ATTCGACCTTATAACCTCAA+GGG + chr5_3:68518487-68518506 None:intergenic 35.0%
AATTCGACCTTATAACCTCA+AGG + chr5_3:68518488-68518507 None:intergenic 35.0%
!! GCATTTGTTGTTCTTCTAAG+AGG - chr5_3:68518948-68518967 Msa0827350:intron 35.0%
!! TTTGTTGTTCTTCTAAGAGG+AGG - chr5_3:68518951-68518970 Msa0827350:intron 35.0%
ATAACATCAGTTCTGCTCAT+TGG + chr5_3:68519007-68519026 None:intergenic 35.0%
! CTGATGTTATTTGCAGTAGA+AGG - chr5_3:68519017-68519036 Msa0827350:intron 35.0%
! ATGTTATTTGCAGTAGAAGG+TGG - chr5_3:68519020-68519039 Msa0827350:intron 35.0%
TGGTGAAACATCATGTTGTT+GGG + chr5_3:68519297-68519316 None:intergenic 35.0%
AACAACATGATGTTTCACCA+GGG - chr5_3:68519297-68519316 Msa0827350:intron 35.0%
TCCTTTCCATCATTAGAAAC+CGG + chr5_3:68519326-68519345 None:intergenic 35.0%
GTGTATGAATGAGATATGCT+AGG - chr5_3:68519730-68519749 Msa0827350:intron 35.0%
ATGAATGAGATATGCTAGGA+TGG - chr5_3:68519734-68519753 Msa0827350:intron 35.0%
TGCAGCGAATACAAAGATTT+GGG + chr5_3:68519796-68519815 None:intergenic 35.0%
TTGCAGCGAATACAAAGATT+TGG + chr5_3:68519797-68519816 None:intergenic 35.0%
!! AACTTCTAGCATTTAGCTTG+AGG - chr5_3:68519831-68519850 Msa0827350:intron 35.0%
! GTTTTACTTCAGAGAGATGA+AGG - chr5_3:68519872-68519891 Msa0827350:intron 35.0%
TATAGCTTTCCCAAGCTTTA+AGG - chr5_3:68519926-68519945 Msa0827350:intron 35.0%
TTCATTGGACCGATATCATT+TGG + chr5_3:68519973-68519992 None:intergenic 35.0%
GATCTACAAGTTTAATGGTC+CGG + chr5_3:68519998-68520017 None:intergenic 35.0%
! TTTTATGATGAAGCAAGGAG+TGG - chr5_3:68520176-68520195 Msa0827350:intron 35.0%
GATTAATGGCCATTGTAATC+TGG - chr5_3:68520311-68520330 Msa0827350:intron 35.0%
TCCAAGAAACCAGATTACAA+TGG + chr5_3:68520323-68520342 None:intergenic 35.0%
! TTGGAACTCGATTTAGAACT+AGG - chr5_3:68520338-68520357 Msa0827350:intron 35.0%
! AACTCGATTTAGAACTAGGA+AGG - chr5_3:68520342-68520361 Msa0827350:intron 35.0%
! TTTTCCTCCTTCTTCTTTCT+AGG - chr5_3:68520518-68520537 Msa0827350:intron 35.0%
TAGCATACCTAGAAAGAAGA+AGG + chr5_3:68520528-68520547 None:intergenic 35.0%
AAACCGTTAATATTACAGGG+GGG + chr5_3:68520596-68520615 None:intergenic 35.0%
GAAACCGTTAATATTACAGG+GGG + chr5_3:68520597-68520616 None:intergenic 35.0%
CCAGAAACCGTTAATATTAC+AGG + chr5_3:68520600-68520619 None:intergenic 35.0%
CCTGTAATATTAACGGTTTC+TGG - chr5_3:68520597-68520616 Msa0827350:intron 35.0%
! CAAAATTGATGATATGCCAG+GGG - chr5_3:68520706-68520725 Msa0827350:intron 35.0%
! AAAATTGATGATATGCCAGG+GGG - chr5_3:68520707-68520726 Msa0827350:intron 35.0%
! GGAAATTTGCTCAGATTACA+GGG - chr5_3:68520735-68520754 Msa0827350:intron 35.0%
! GAAATTTGCTCAGATTACAG+GGG - chr5_3:68520736-68520755 Msa0827350:intron 35.0%
AGAAACAACCAACATGGATT+TGG + chr5_3:68520816-68520835 None:intergenic 35.0%
CACTAAAGAAACAACCAACA+TGG + chr5_3:68520822-68520841 None:intergenic 35.0%
TTTGTGTTTGTGTCGAGATT+TGG - chr5_3:68520888-68520907 Msa0827350:intron 35.0%
TAAGTCTTTGCCACATCTTT+AGG - chr5_3:68520933-68520952 Msa0827350:intron 35.0%
CTTGGATTATCCTAAAGATG+TGG + chr5_3:68520946-68520965 None:intergenic 35.0%
!! CACATCTTTAGGATAATCCA+AGG - chr5_3:68520944-68520963 Msa0827350:intron 35.0%
ACATCAGTTGTCCTGTTTAT+TGG - chr5_3:68521021-68521040 Msa0827350:intron 35.0%
TTTCCCCATTACTTTCTACA+TGG - chr5_3:68521108-68521127 Msa0827350:intron 35.0%
AGCCATATATAGATCTGTTG+AGG - chr5_3:68521137-68521156 Msa0827350:intron 35.0%
CAAACCAGATTGTATTGTGA+GGG + chr5_3:68521296-68521315 None:intergenic 35.0%
TTACTCTTTGGTTGATCTGT+AGG - chr5_3:68521334-68521353 Msa0827350:intron 35.0%
CTTGTATATTGCCACTAGTT+TGG - chr5_3:68521360-68521379 Msa0827350:intron 35.0%
TGCATTTCATACCAAACTAG+TGG + chr5_3:68521374-68521393 None:intergenic 35.0%
TCTATGAACAAGGTAAGGTA+TGG + chr5_3:68521403-68521422 None:intergenic 35.0%
!! CAAATTTGCTGTAGTGTCAT+CGG - chr5_3:68521448-68521467 Msa0827350:CDS 35.0%
!!! AGTACATGGGTTTTAAGATG+TGG + chr5_3:68521528-68521547 None:intergenic 35.0%
AGTACAACTCTACAAGCATT+AGG + chr5_3:68521671-68521690 None:intergenic 35.0%
ATCACCAATGTCAACGATAA+TGG + chr5_3:68521745-68521764 None:intergenic 35.0%
ATTATCGTTGACATTGGTGA+TGG - chr5_3:68521744-68521763 Msa0827350:CDS 35.0%
ATGGAATCTGTCCAAAAAAC+TGG - chr5_3:68521763-68521782 Msa0827350:CDS 35.0%
! TTGTTATTCTGGACCTGAAA+TGG - chr5_3:68521827-68521846 Msa0827350:CDS 35.0%
CATGTCCTATAAACCATTTC+AGG + chr5_3:68521843-68521862 None:intergenic 35.0%
TCTGTTGTTGCATATTGAAG+TGG - chr5_3:68521949-68521968 Msa0827350:CDS 35.0%
!! TTTTGCATGCTATGTTGACT+TGG - chr5_3:68522033-68522052 Msa0827350:five_prime_UTR 35.0%
!! ATGCTATGTTGACTTGGAAA+AGG - chr5_3:68522039-68522058 Msa0827350:five_prime_UTR 35.0%
! TTGTTGCTTCTAGTTAAGTC+AGG - chr5_3:68522110-68522129 Msa0827350:intron 35.0%
! TGTTGCTTCTAGTTAAGTCA+GGG - chr5_3:68522111-68522130 Msa0827350:intron 35.0%
GAGTGATGTTGTGTTAAAGA+TGG + chr5_3:68522625-68522644 None:intergenic 35.0%
!!! GTGAAGATTTTTTGGTCCTT+TGG - chr5_3:68522662-68522681 Msa0827350:intron 35.0%
GTTGGTGTATATATCTCCAA+AGG + chr5_3:68522681-68522700 None:intergenic 35.0%
CATAACACAAATTCGTCAAC+AGG + chr5_3:68522930-68522949 None:intergenic 35.0%
GACGAATTTGTGTTATGACT+AGG - chr5_3:68522933-68522952 Msa0827350:five_prime_UTR 35.0%
!!! TTTTGAGGTATATCTGTTGC+AGG - chr5_3:68522963-68522982 Msa0827350:five_prime_UTR 35.0%
GATCGAAGAAGAACAAGAAG+AGG + chr5_3:68518162-68518181 None:intergenic 40.0%
GATTTGAACTTTGTCCCTTG+AGG - chr5_3:68518470-68518489 Msa0827350:CDS 40.0%
CTTTGTCCCTTGAGGTTATA+AGG - chr5_3:68518478-68518497 Msa0827350:intron 40.0%
TGTCCTTGTCTTAGCTTAGA+AGG - chr5_3:68518678-68518697 Msa0827350:intron 40.0%
AAGCCTTCTAAGCTAAGACA+AGG + chr5_3:68518684-68518703 None:intergenic 40.0%
! TTTGAAGAGTGCAAGTGCAT+AGG - chr5_3:68518820-68518839 Msa0827350:intron 40.0%
TTATTTGCAGTAGAAGGTGG+AGG - chr5_3:68519023-68519042 Msa0827350:intron 40.0%
ACTCCATCACCTCTTAAAGT+CGG - chr5_3:68519266-68519285 Msa0827350:intron 40.0%
GAAACATCATGTTGTTGGGT+TGG + chr5_3:68519293-68519312 None:intergenic 40.0%
CTGGTGAAACATCATGTTGT+TGG + chr5_3:68519298-68519317 None:intergenic 40.0%
CAACAACATGATGTTTCACC+AGG - chr5_3:68519296-68519315 Msa0827350:intron 40.0%
! ACCGGTTTCTAATGATGGAA+AGG - chr5_3:68519322-68519341 Msa0827350:intron 40.0%
AAATACGAGAATTTGAGCCC+AGG - chr5_3:68519549-68519568 Msa0827350:intron 40.0%
TTTAATGGTCCGGCATTCAT+TGG + chr5_3:68519988-68520007 None:intergenic 40.0%
TTTGTACACCTATGCGTAGA+AGG + chr5_3:68520033-68520052 None:intergenic 40.0%
! GCCATTGTAATCTGGTTTCT+TGG - chr5_3:68520319-68520338 Msa0827350:intron 40.0%
CATACCTAGAAAGAAGAAGG+AGG + chr5_3:68520525-68520544 None:intergenic 40.0%
TTGCCCCCCTGTAATATTAA+CGG - chr5_3:68520590-68520609 Msa0827350:intron 40.0%
! CGGAAATTTGCTCAGATTAC+AGG - chr5_3:68520734-68520753 Msa0827350:intron 40.0%
GTTCTACACCAAATCCATGT+TGG - chr5_3:68520805-68520824 Msa0827350:intron 40.0%
AGGACTAGACATCTCTAATG+TGG + chr5_3:68521197-68521216 None:intergenic 40.0%
ACATTAGAGATGTCTAGTCC+TGG - chr5_3:68521196-68521215 Msa0827350:intron 40.0%
CCAAACCAGATTGTATTGTG+AGG + chr5_3:68521297-68521316 None:intergenic 40.0%
CCTCACAATACAATCTGGTT+TGG - chr5_3:68521294-68521313 Msa0827350:intron 40.0%
GCAAATTGAGTGTTCACATG+CGG - chr5_3:68521470-68521489 Msa0827350:CDS 40.0%
CAAATTGAGTGTTCACATGC+GGG - chr5_3:68521471-68521490 Msa0827350:CDS 40.0%
AACATGGAAAAAGCCTAACC+AGG + chr5_3:68521501-68521520 None:intergenic 40.0%
AGCATTAGGCTGTAAAGCTT+CGG + chr5_3:68521657-68521676 None:intergenic 40.0%
AGCACCATTATCGTTGACAT+TGG - chr5_3:68521738-68521757 Msa0827350:CDS 40.0%
TCTGTCCAAAAAACTGGATG+TGG - chr5_3:68521769-68521788 Msa0827350:CDS 40.0%
CTGTCCAAAAAACTGGATGT+GGG - chr5_3:68521770-68521789 Msa0827350:CDS 40.0%
CCAGAATAACAAGTAAGCCA+AGG + chr5_3:68521819-68521838 None:intergenic 40.0%
!! CCTTGGCTTACTTGTTATTC+TGG - chr5_3:68521816-68521835 Msa0827350:CDS 40.0%
CTGGACCTGAAATGGTTTAT+AGG - chr5_3:68521835-68521854 Msa0827350:CDS 40.0%
! ACATGACATGATTTGGAGAC+AGG - chr5_3:68521858-68521877 Msa0827350:CDS 40.0%
CTTGGAAAAGGTTGTTACTG+TGG - chr5_3:68522051-68522070 Msa0827350:intron 40.0%
TCTGCCACATCAGCAAATTA+TGG - chr5_3:68522082-68522101 Msa0827350:intron 40.0%
CAAACAAGCTAACTGCAGTA+CGG + chr5_3:68522303-68522322 None:intergenic 40.0%
TAATGGTTGTCAACCTGTCA+GGG + chr5_3:68522344-68522363 None:intergenic 40.0%
TTAATGGTTGTCAACCTGTC+AGG + chr5_3:68522345-68522364 None:intergenic 40.0%
AAGACGTTAGGGTCATTCAT+CGG - chr5_3:68522594-68522613 Msa0827350:intron 40.0%
AAGAGGCGAGTAAACAGTAC+CGG + chr5_3:68518145-68518164 None:intergenic 45.0%
TCTTCGTTGCGATTTGTCGT+AGG - chr5_3:68518447-68518466 Msa0827350:CDS 45.0%
CTTCGTTGCGATTTGTCGTA+GGG - chr5_3:68518448-68518467 Msa0827350:CDS 45.0%
TGGAGGATTCTTCTCTGCTT+CGG - chr5_3:68519040-68519059 Msa0827350:intron 45.0%
TCCTTTGACCCAAAAGGAGT+AGG + chr5_3:68519091-68519110 None:intergenic 45.0%
CCTCATTCCTTTGACCCAAA+AGG + chr5_3:68519097-68519116 None:intergenic 45.0%
!! CCTTTTGGGTCAAAGGAATG+AGG - chr5_3:68519094-68519113 Msa0827350:intron 45.0%
!! ACCAACTGGTAATGGTTCCA+CGG + chr5_3:68519140-68519159 None:intergenic 45.0%
CTTGGTCTACCAACTGGTAA+TGG + chr5_3:68519148-68519167 None:intergenic 45.0%
CAGATTCTTGGTCTACCAAC+TGG + chr5_3:68519154-68519173 None:intergenic 45.0%
CTTCTTTCTGCTTGATCACC+AGG + chr5_3:68519488-68519507 None:intergenic 45.0%
CTGGTGATCAAGCAGAAAGA+AGG - chr5_3:68519486-68519505 Msa0827350:intron 45.0%
GATATCGGTCCAATGAATGC+CGG - chr5_3:68519976-68519995 Msa0827350:intron 45.0%
GCGTAGAAGGAGTTGGATTA+AGG + chr5_3:68520020-68520039 None:intergenic 45.0%
ATCCAACTCCTTCTACGCAT+AGG - chr5_3:68520022-68520041 Msa0827350:intron 45.0%
! AAAGCTTGAGGAGAGGCATA+TGG + chr5_3:68520213-68520232 None:intergenic 45.0%
! TATGCCTCTCCTCAAGCTTT+TGG - chr5_3:68520213-68520232 Msa0827350:intron 45.0%
! ATGCCTCTCCTCAAGCTTTT+GGG - chr5_3:68520214-68520233 Msa0827350:intron 45.0%
!! AGCTTTTGGGTGTCTGTGAT+TGG - chr5_3:68520227-68520246 Msa0827350:intron 45.0%
!! TTTTGGGTGTCTGTGATTGG+AGG - chr5_3:68520230-68520249 Msa0827350:intron 45.0%
AGGAACAATGATAGAGGGCA+AGG + chr5_3:68520436-68520455 None:intergenic 45.0%
ATGATATGCCAGGGGGTAAA+CGG - chr5_3:68520714-68520733 Msa0827350:intron 45.0%
TGGCCTGAGTGGTTTGATAA+CGG + chr5_3:68521177-68521196 None:intergenic 45.0%
TAACATATCCTCTCAGGACC+AGG + chr5_3:68521217-68521236 None:intergenic 45.0%
GCATCCCTCACAATACAATC+TGG - chr5_3:68521289-68521308 Msa0827350:intron 45.0%
! GTCAACGATAATGGTGCTGA+AGG + chr5_3:68521736-68521755 None:intergenic 45.0%
!!! CCTTCCCACATCCAGTTTTT+TGG + chr5_3:68521777-68521796 None:intergenic 45.0%
CCAAAAAACTGGATGTGGGA+AGG - chr5_3:68521774-68521793 Msa0827350:CDS 45.0%
TGCAGCTATGGTGTTTACCT+TGG - chr5_3:68521799-68521818 Msa0827350:CDS 45.0%
! TGATTTGGAGACAGGCATGT+CGG - chr5_3:68521866-68521885 Msa0827350:CDS 45.0%
!! GCTGCCATAATTTGCTGATG+TGG + chr5_3:68522089-68522108 None:intergenic 45.0%
GTCAGGGATCCAATTGAAAC+TGG - chr5_3:68522127-68522146 Msa0827350:intron 45.0%
TTGTCAACCTGTCAGGGTAT+AGG + chr5_3:68522338-68522357 None:intergenic 45.0%
ATCCACTTCACTGCAGTTGA+AGG + chr5_3:68522500-68522519 None:intergenic 45.0%
TTCAACTGCAGTGAAGTGGA+TGG - chr5_3:68522499-68522518 Msa0827350:intron 45.0%
AGACGTTAGGGTCATTCATC+GGG - chr5_3:68522595-68522614 Msa0827350:intron 45.0%
CAATCACTCCCACAACATGT+TGG + chr5_3:68522699-68522718 None:intergenic 45.0%
! GTCTCTACTATTGCTTGCTG+CGG - chr5_3:68522724-68522743 Msa0827350:intron 45.0%
!!! TAATTTGTTTTATTATTATT+TGG - chr5_3:68518334-68518353 Msa0827350:three_prime_UTR 5.0%
!!! AAAAAACATATATTTTTAAA+AGG + chr5_3:68519760-68519779 None:intergenic 5.0%
!! TTGTTTAATAAATATATATT+CGG + chr5_3:68522263-68522282 None:intergenic 5.0%
GAGTCGTCGGAGGAAAAACT+CGG + chr5_3:68518057-68518076 None:intergenic 50.0%
! GTTTTTCCTCCGACGACTCA+CGG - chr5_3:68518058-68518077 Msa0827350:three_prime_UTR 50.0%
! GGAGAATCAGAAGCACAGGT+CGG + chr5_3:68518124-68518143 None:intergenic 50.0%
GACCTGTGCTTCTGATTCTC+CGG - chr5_3:68518123-68518142 Msa0827350:three_prime_UTR 50.0%
! TACCGGAGAATCAGAAGCAC+AGG + chr5_3:68518128-68518147 None:intergenic 50.0%
ATCACTGAGCCGACATCTCT+TGG - chr5_3:68518511-68518530 Msa0827350:intron 50.0%
TTCTTCTCTGCTTCGGCTTC+AGG - chr5_3:68519047-68519066 Msa0827350:intron 50.0%
TCTTCTCTGCTTCGGCTTCA+GGG - chr5_3:68519048-68519067 Msa0827350:intron 50.0%
TTCGGCTTCAGGGTATAGCA+AGG - chr5_3:68519058-68519077 Msa0827350:intron 50.0%
TCGGCTTCAGGGTATAGCAA+GGG - chr5_3:68519059-68519078 Msa0827350:intron 50.0%
!! GCCTACTCCTTTTGGGTCAA+AGG - chr5_3:68519087-68519106 Msa0827350:intron 50.0%
TTCCACGGTGCAACTCTCAT+GGG + chr5_3:68519125-68519144 None:intergenic 50.0%
ACCGTGGAACCATTACCAGT+TGG - chr5_3:68519136-68519155 Msa0827350:intron 50.0%
GGAGTTGAGGGTCAGATTCT+TGG + chr5_3:68519166-68519185 None:intergenic 50.0%
GATTCTTTGTGGAAGCCAGC+TGG + chr5_3:68519187-68519206 None:intergenic 50.0%
ACAAAGAATCGCCTTTCCCG+CGG - chr5_3:68519197-68519216 Msa0827350:CDS 50.0%
TGTGCCTCCTTTGTCTGCTT+TGG - chr5_3:68519221-68519240 Msa0827350:CDS 50.0%
AGTGCGACCAAAGCAGACAA+AGG + chr5_3:68519231-68519250 None:intergenic 50.0%
! TGATGGAGTATCATGCCCTG+CGG + chr5_3:68519255-68519274 None:intergenic 50.0%
! GGTCCGACTTTAAGAGGTGA+TGG + chr5_3:68519272-68519291 None:intergenic 50.0%
!! TGGGTTGGTCCGACTTTAAG+AGG + chr5_3:68519278-68519297 None:intergenic 50.0%
TGATGTTTCACCAGGGCTAC+CGG - chr5_3:68519304-68519323 Msa0827350:intron 50.0%
TCATTAGAAACCGGTAGCCC+TGG + chr5_3:68519317-68519336 None:intergenic 50.0%
!! GGGCTACCGGTTTCTAATGA+TGG - chr5_3:68519317-68519336 Msa0827350:intron 50.0%
ACCAATGAGCAAGACGCATC+AGG - chr5_3:68519443-68519462 Msa0827350:intron 50.0%
ACCTGATGCGTCTTGCTCAT+TGG + chr5_3:68519447-68519466 None:intergenic 50.0%
AATGAGCAAGACGCATCAGG+TGG - chr5_3:68519446-68519465 Msa0827350:intron 50.0%
! GGACATGTCGTTTGTACTCC+TGG - chr5_3:68519467-68519486 Msa0827350:intron 50.0%
! CAGAAAGAAGGAGAGTGCAG+TGG - chr5_3:68519498-68519517 Msa0827350:intron 50.0%
CACCTATGCGTAGAAGGAGT+TGG + chr5_3:68520027-68520046 None:intergenic 50.0%
ACACCCAAAAGCTTGAGGAG+AGG + chr5_3:68520220-68520239 None:intergenic 50.0%
CACAGACACCCAAAAGCTTG+AGG + chr5_3:68520225-68520244 None:intergenic 50.0%
GCAAATTTCCGTTTACCCCC+TGG + chr5_3:68520725-68520744 None:intergenic 50.0%
!! CTGAGTGGTTTGATAACGGG+TGG + chr5_3:68521173-68521192 None:intergenic 50.0%
CACCCGTTATCAAACCACTC+AGG - chr5_3:68521171-68521190 Msa0827350:intron 50.0%
! GGCCTGAGTGGTTTGATAAC+GGG + chr5_3:68521176-68521195 None:intergenic 50.0%
CATCTCTAATGTGGCCTGAG+TGG + chr5_3:68521188-68521207 None:intergenic 50.0%
TGTTCACATGCGGGTATACC+TGG - chr5_3:68521480-68521499 Msa0827350:CDS 50.0%
ACATGCGGGTATACCTGGTT+AGG - chr5_3:68521485-68521504 Msa0827350:CDS 50.0%
TCCCCTAAGAAGCTCTTCAG+CGG - chr5_3:68521566-68521585 Msa0827350:CDS 50.0%
AGCCGCTGAAGAGCTTCTTA+GGG + chr5_3:68521571-68521590 None:intergenic 50.0%
TGTGGGAAGGAATGCAGCTA+TGG - chr5_3:68521787-68521806 Msa0827350:CDS 50.0%
GATTTGGAGACAGGCATGTC+GGG - chr5_3:68521867-68521886 Msa0827350:CDS 50.0%
CTAGTGCACAATTTGAGCCG+TGG - chr5_3:68521897-68521916 Msa0827350:CDS 50.0%
AACCTGTCCTATACCCTGAC+AGG - chr5_3:68522328-68522347 Msa0827350:intron 50.0%
AACCTGTCAGGGTATAGGAC+AGG + chr5_3:68522333-68522352 None:intergenic 50.0%
ATTATGCGGCCGTGAGTCGT+CGG + chr5_3:68518070-68518089 None:intergenic 55.0%
CGTGGATCGACGGTGAAGAA+TGG + chr5_3:68518096-68518115 None:intergenic 55.0%
! GAATCAGAAGCACAGGTCGG+CGG + chr5_3:68518121-68518140 None:intergenic 55.0%
! GGCCTGAGCCTACTCCTTTT+GGG - chr5_3:68519080-68519099 Msa0827350:intron 55.0%
GACCCAAAAGGAGTAGGCTC+AGG + chr5_3:68519085-68519104 None:intergenic 55.0%
AACCCATGAGAGTTGCACCG+TGG - chr5_3:68519120-68519139 Msa0827350:intron 55.0%
GTTCCACGGTGCAACTCTCA+TGG + chr5_3:68519126-68519145 None:intergenic 55.0%
ATCTGACCCTCAACTCCAGC+TGG - chr5_3:68519169-68519188 Msa0827350:CDS 55.0%
TGGAAGCCAGCTGGAGTTGA+GGG + chr5_3:68519178-68519197 None:intergenic 55.0%
GCGGGAAAGGCGATTCTTTG+TGG + chr5_3:68519198-68519217 None:intergenic 55.0%
CAAAGAATCGCCTTTCCCGC+GGG - chr5_3:68519198-68519217 Msa0827350:CDS 55.0%
GCGACCAAAGCAGACAAAGG+AGG + chr5_3:68519228-68519247 None:intergenic 55.0%
GTGCAGTGGACAGATGCTTG+CGG - chr5_3:68519512-68519531 Msa0827350:intron 55.0%
TGAAGCAAGGAGTGGCGCTT+CGG - chr5_3:68520184-68520203 Msa0827350:intron 55.0%
TGTCTAGTCCTGGTCCTGAG+AGG - chr5_3:68521206-68521225 Msa0827350:intron 55.0%
GCCGCTGAAGAGCTTCTTAG+GGG + chr5_3:68521570-68521589 None:intergenic 55.0%
GAGCCGCTGAAGAGCTTCTT+AGG + chr5_3:68521572-68521591 None:intergenic 55.0%
AGGCAGCAAATCAGCACTGC+AGG + chr5_3:68521716-68521735 None:intergenic 55.0%
CCAAGTCCAACCATGCCTCA+CGG + chr5_3:68521923-68521942 None:intergenic 55.0%
TGAGGCATGGTTGGACTTGG+AGG - chr5_3:68521923-68521942 Msa0827350:CDS 55.0%
GAGGCATGGTTGGACTTGGA+GGG - chr5_3:68521924-68521943 Msa0827350:CDS 55.0%
AGGCATGGTTGGACTTGGAG+GGG - chr5_3:68521925-68521944 Msa0827350:CDS 55.0%
! TTAGGGCTGACTAGCTGAGC+AGG - chr5_3:68521992-68522011 Msa0827350:five_prime_UTR 55.0%
! GCTGACTAGCTGAGCAGGTT+TGG - chr5_3:68521997-68522016 Msa0827350:five_prime_UTR 55.0%
! GGGCCTGAGCCTACTCCTTT+TGG - chr5_3:68519079-68519098 Msa0827350:intron 60.0%
GTGGAAGCCAGCTGGAGTTG+AGG + chr5_3:68519179-68519198 None:intergenic 60.0%
! AGACAAAGGAGGCACACCCG+CGG + chr5_3:68519217-68519236 None:intergenic 60.0%
TGCTTTGGTCGCACTTCCGC+AGG - chr5_3:68519236-68519255 Msa0827350:CDS 60.0%
GCTTTGGTCGCACTTCCGCA+GGG - chr5_3:68519237-68519256 Msa0827350:CDS 60.0%
CAATTTGAGCCGTGGCCGTG+AGG - chr5_3:68521905-68521924 Msa0827350:CDS 60.0%
CCGTGAGGCATGGTTGGACT+TGG - chr5_3:68521920-68521939 Msa0827350:CDS 60.0%
! GACAAAGGAGGCACACCCGC+GGG + chr5_3:68519216-68519235 None:intergenic 65.0%
CCAACCATGCCTCACGGCCA+CGG + chr5_3:68521917-68521936 None:intergenic 65.0%
ATGCGGCCGTGAGTCGTCGG+AGG + chr5_3:68518067-68518086 None:intergenic 70.0%
! AGGAGGCACACCCGCGGGAA+AGG + chr5_3:68519211-68519230 None:intergenic 70.0%
TGAGCCGTGGCCGTGAGGCA+TGG - chr5_3:68521910-68521929 Msa0827350:CDS 70.0%
CCGTGGCCGTGAGGCATGGT+TGG - chr5_3:68521914-68521933 Msa0827350:CDS 70.0%
GTCGGCGGCGCGTGGATCGA+CGG + chr5_3:68518106-68518125 None:intergenic 75.0%
AAGCACAGGTCGGCGGCGCG+TGG + chr5_3:68518114-68518133 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 68517996 68523008 68517996 ID=Msa0827350;Name=Msa0827350
chr5_3 mRNA 68517996 68523008 68517996 ID=Msa0827350-mRNA-1;Parent=Msa0827350;Name=Msa0827350-mRNA-1;_AED=0.34;_eAED=0.34;_QI=227|0.33|0.75|0.75|0.33|0|4|429|249
chr5_3 exon 68517996 68518494 68517996 ID=Msa0827350-mRNA-1:exon:21572;Parent=Msa0827350-mRNA-1
chr5_3 exon 68519156 68519284 68519156 ID=Msa0827350-mRNA-1:exon:21571;Parent=Msa0827350-mRNA-1
chr5_3 exon 68521434 68522062 68521434 ID=Msa0827350-mRNA-1:exon:21570;Parent=Msa0827350-mRNA-1
chr5_3 exon 68522860 68523008 68522860 ID=Msa0827350-mRNA-1:exon:21569;Parent=Msa0827350-mRNA-1
chr5_3 five_prime_UTR 68522860 68523008 68522860 ID=Msa0827350-mRNA-1:five_prime_utr;Parent=Msa0827350-mRNA-1
chr5_3 five_prime_UTR 68521985 68522062 68521985 ID=Msa0827350-mRNA-1:five_prime_utr;Parent=Msa0827350-mRNA-1
chr5_3 CDS 68521434 68521984 68521434 ID=Msa0827350-mRNA-1:cds;Parent=Msa0827350-mRNA-1
chr5_3 CDS 68519156 68519284 68519156 ID=Msa0827350-mRNA-1:cds;Parent=Msa0827350-mRNA-1
chr5_3 CDS 68518425 68518494 68518425 ID=Msa0827350-mRNA-1:cds;Parent=Msa0827350-mRNA-1
chr5_3 three_prime_UTR 68517996 68518424 68517996 ID=Msa0827350-mRNA-1:three_prime_utr;Parent=Msa0827350-mRNA-1
Gene Sequence

>Msa0827350

ATGTTATTTGCAGTAGAAGGTGGAGGATTCTTCTCTGCTTCGGCTTCAGGGTATAGCAAGGGCCTGAGCCTACTCCTTTTGGGTCAAAGGAATGAGGATAAACCCATGAGAGTTGCACCGTGGAACCATTACCAGTTGGTAGACCAAGAATCTGACCCTCAACTCCAGCTGGCTTCCACAAAGAATCGCCTTTCCCGCGGGTGTGCCTCCTTTGTCTGCTTTGGTCGCACTTCCGCAGGGCATGATACTCCATCACCTCTTAAAGTCGGACCAACCCAACAACATGATGTTTCACCAGGGCTACCGGTTTCTAATGATGGAAAGGATCCCTCTCATATAGATGATAACAATGATGGTATAAAGGTCACTCTTAAAAGTAGCATTAGAAGGCCACACAGTAATAATTCAGTTTCTGTTGAGGCTACCAATGAGCAAGACGCATCAGGTGGACATGTCGTTTGTACTCCTGGTGATCAAGCAGAAAGAAGGAGAGTGCAGTGGACAGATGCTTGCGGTAGTGAGCTTGTTGAAATACGAGAATTTGAGCCCAGTGCTGATTTGCTGCCTTCAGCACCATTATCGTTGACATTGGTGATGGAATCTGTCCAAAAAACTGGATGTGGGAAGGAATGCAGCTATGGTGTTTACCTTGGCTTACTTGTTATTCTGGACCTGAAATGTGAAGTGGATGGATCAGATGATGAATATGATAATGGAAATGAGAGAACTTGTTCCTGTGCGATAATGTAA

Protein sequence

>Msa0827350

MLFAVEGGGFFSASASGYSKGLSLLLLGQRNEDKPMRVAPWNHYQLVDQESDPQLQLASTKNRLSRGCASFVCFGRTSAGHDTPSPLKVGPTQQHDVSPGLPVSNDGKDPSHIDDNNDGIKVTLKSSIRRPHSNNSVSVEATNEQDASGGHVVCTPGDQAERRRVQWTDACGSELVEIREFEPSADLLPSAPLSLTLVMESVQKTGCGKECSYGVYLGLLVILDLKCEVDGSDDEYDNGNERTCSCAIM*