AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1306570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306570 MtrunA17_Chr8g0386961 99.303 287 2 0 1 287 1 287 0.0 581
Msa1306570 MtrunA17_Chr5g0397391 92.657 286 21 0 1 286 1 286 0.0 550
Msa1306570 MtrunA17_Chr5g0436701 86.364 286 37 1 3 286 4 289 0.0 510
Msa1306570 MtrunA17_Chr3g0113211 87.719 285 33 1 3 285 4 288 0.0 510
Msa1306570 MtrunA17_Chr4g0006001 82.986 288 45 2 2 286 3 289 2.69e-179 495
Msa1306570 MtrunA17_Chr7g0264111 71.218 271 68 3 16 280 6 272 4.15e-140 396
Msa1306570 MtrunA17_Chr1g0199731 71.923 260 66 2 27 280 14 272 2.27e-135 384
Msa1306570 MtrunA17_Chr3g0145671 70.455 264 77 1 21 284 6 268 3.69e-135 383
Msa1306570 MtrunA17_Chr2g0326621 64.261 291 84 3 1 284 1 278 4.89e-135 383
Msa1306570 MtrunA17_Chr4g0029071 66.917 266 81 2 25 284 12 276 4.24e-131 373
Msa1306570 MtrunA17_Chr1g0188771 36.638 232 128 7 52 278 21 238 4.66e-33 122
Msa1306570 MtrunA17_Chr2g0331261 35.897 234 135 5 47 277 15 236 2.46e-32 119
Msa1306570 MtrunA17_Chr6g0478191 38.723 235 128 7 52 282 21 243 8.03e-32 118
Msa1306570 MtrunA17_Chr4g0030861 34.034 238 142 5 41 275 10 235 4.28e-30 114
Msa1306570 MtrunA17_Chr8g0340161 35.470 234 134 6 46 274 11 232 7.18e-30 113
Msa1306570 MtrunA17_Chr1g0212671 34.426 244 140 7 41 278 10 239 4.71e-29 111
Msa1306570 MtrunA17_Chr7g0264961 33.333 243 138 7 42 277 11 236 3.80e-28 108
Msa1306570 MtrunA17_Chr7g0222791 33.884 242 144 6 41 278 10 239 7.58e-28 107
Msa1306570 MtrunA17_Chr5g0399341 36.726 226 127 7 52 274 19 231 7.25e-27 105
Msa1306570 MtrunA17_Chr1g0146161 33.333 231 127 7 52 275 19 229 2.25e-26 103
Msa1306570 MtrunA17_Chr1g0146171 33.906 233 123 8 52 275 19 229 1.61e-25 101
Msa1306570 MtrunA17_Chr5g0426131 30.263 228 144 6 47 274 32 244 1.08e-19 86.3
Msa1306570 MtrunA17_Chr8g0379901 28.014 282 174 9 11 287 2 259 1.15e-19 86.3
Msa1306570 MtrunA17_Chr5g0435051 28.646 192 124 4 84 275 68 246 1.42e-17 80.5
Msa1306570 MtrunA17_Chr2g0284591 31.944 216 125 6 55 267 39 235 4.06e-17 79.3
Msa1306570 MtrunA17_Chr8g0379911 27.917 240 156 6 49 287 35 258 8.02e-17 78.6
Msa1306570 MtrunA17_Chr2g0284631 27.391 230 145 6 41 267 80 290 9.51e-17 79.0
Msa1306570 MtrunA17_Chr4g0001221 28.205 234 140 8 34 267 68 273 1.83e-16 77.8
Msa1306570 MtrunA17_Chr4g0038591 27.692 195 119 7 99 279 95 281 2.46e-16 77.8
Msa1306570 MtrunA17_Chr2g0333771 30.986 213 128 7 56 267 84 278 3.20e-16 77.4
Msa1306570 MtrunA17_Chr7g0217331 28.390 236 149 7 50 284 35 251 4.46e-16 76.3
Msa1306570 MtrunA17_Chr3g0079421 29.688 192 122 4 84 275 54 232 4.55e-16 76.3
Msa1306570 MtrunA17_Chr4g0020781 32.432 185 101 6 100 278 29 195 4.75e-16 75.1
Msa1306570 MtrunA17_Chr2g0284611 30.736 231 141 8 50 279 36 248 9.61e-16 75.5
Msa1306570 MtrunA17_Chr2g0284581 29.577 213 134 5 55 267 41 237 1.18e-15 75.1
Msa1306570 MtrunA17_Chr4g0038611 28.125 192 122 5 99 279 32 218 1.28e-15 75.1
Msa1306570 MtrunA17_Chr4g0044201 26.549 226 133 6 55 277 38 233 5.33e-15 73.2
Msa1306570 MtrunA17_Chr2g0284601 30.726 179 111 3 89 267 24 189 6.27e-15 72.4
Msa1306570 MtrunA17_Chr1g0201331 29.204 226 140 8 56 279 78 285 2.34e-13 68.9
Msa1306570 MtrunA17_Chr1g0184541 25.333 225 149 6 49 272 59 265 2.59e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306570 AT4G00430.1 85.263 285 41 1 3 287 4 287 0.0 504
Msa1306570 AT2G45960.1 86.316 285 37 2 3 287 4 286 0.0 502
Msa1306570 AT4G23400.1 87.719 285 34 1 3 287 4 287 9.77e-175 484
Msa1306570 AT1G01620.1 87.018 285 35 2 3 287 4 286 6.07e-173 479
Msa1306570 AT3G61430.2 85.965 285 38 2 3 287 4 286 2.09e-171 476
Msa1306570 AT3G61430.1 85.965 285 38 2 3 287 4 286 2.09e-171 476
Msa1306570 AT2G45960.2 86.614 254 32 2 3 256 4 255 6.42e-161 448
Msa1306570 AT2G45960.3 86.614 254 32 2 3 256 4 255 1.71e-159 446
Msa1306570 AT2G37170.2 71.538 260 67 3 27 280 55 313 3.86e-134 383
Msa1306570 AT4G35100.1 71.875 256 71 1 29 284 15 269 5.26e-134 380
Msa1306570 AT4G35100.2 71.875 256 71 1 29 284 15 269 5.26e-134 380
Msa1306570 AT1G01620.2 86.512 215 28 1 73 287 1 214 5.78e-134 378
Msa1306570 AT2G37170.1 71.538 260 67 3 27 280 12 270 9.39e-134 380
Msa1306570 AT3G53420.1 71.154 260 68 2 27 280 14 272 1.10e-133 380
Msa1306570 AT3G53420.2 71.154 260 68 2 27 280 14 272 1.10e-133 380
Msa1306570 AT2G37180.1 71.538 260 67 3 27 280 12 270 1.18e-133 380
Msa1306570 AT2G16850.1 71.875 256 71 1 29 284 13 267 5.38e-133 378
Msa1306570 AT5G60660.1 70.342 263 71 2 28 284 15 276 1.55e-132 377
Msa1306570 AT3G54820.1 67.778 270 80 2 17 280 3 271 4.24e-132 376
Msa1306570 AT2G39010.1 65.950 279 82 3 12 284 4 275 6.30e-131 373
Msa1306570 AT4G00430.2 82.547 212 36 1 3 214 4 214 2.98e-127 361
Msa1306570 AT2G39010.2 63.000 200 67 2 17 210 3 201 2.62e-84 252
Msa1306570 AT4G01470.1 35.146 239 140 5 42 277 11 237 2.57e-32 120
Msa1306570 AT1G73190.1 35.656 244 128 8 52 282 24 251 1.75e-31 118
Msa1306570 AT1G17810.1 36.596 235 129 5 52 278 24 246 2.57e-31 117
Msa1306570 AT5G47450.1 37.021 235 133 7 43 274 10 232 1.95e-30 115
Msa1306570 AT3G16240.1 35.931 231 133 6 47 274 14 232 7.03e-30 113
Msa1306570 AT3G26520.1 33.624 229 137 5 52 277 22 238 8.82e-29 110
Msa1306570 AT2G36830.1 33.469 245 136 8 41 276 10 236 4.83e-28 108
Msa1306570 AT4G17340.1 36.170 235 135 7 43 274 10 232 3.16e-27 106
Msa1306570 AT2G25810.1 33.478 230 135 8 52 278 19 233 3.17e-24 98.6
Msa1306570 AT3G47440.1 31.687 243 135 8 47 278 18 240 4.38e-24 98.6
Msa1306570 AT4G19030.1 26.712 292 185 8 3 287 13 282 3.91e-19 85.9
Msa1306570 AT1G31885.1 31.111 225 142 7 45 267 36 249 4.03e-18 83.2
Msa1306570 AT5G37820.1 28.571 217 129 7 55 266 46 241 2.60e-17 80.5
Msa1306570 AT5G37820.2 28.571 217 129 7 55 266 82 277 2.90e-17 80.9
Msa1306570 AT4G18910.1 27.027 259 165 8 38 287 36 279 1.54e-15 75.5
Msa1306570 AT2G34390.1 26.336 262 162 9 22 277 27 263 2.02e-15 75.1
Msa1306570 AT1G31885.2 31.351 185 117 5 85 267 19 195 5.50e-15 73.6
Msa1306570 AT3G06100.1 29.707 239 140 8 52 286 46 260 1.66e-14 72.4
Msa1306570 AT3G06100.2 29.661 236 138 8 55 286 1 212 4.19e-14 70.5
Msa1306570 AT2G34390.2 27.074 229 145 8 55 277 9 221 1.21e-13 69.7
Msa1306570 AT4G10380.1 26.022 269 166 8 21 273 32 283 2.21e-13 69.7
Msa1306570 AT5G37810.1 26.923 234 154 7 55 287 46 263 3.06e-13 68.9

Find 91 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAATTTCATAGTGTATT+TGG 0.069540 8_4:-1532542 Msa1306570:three_prime_UTR
CAAGGTATTGCTTGGTCTTT+TGG 0.121056 8_4:-1534044 Msa1306570:CDS
CATTGGGTTTGCTGTGTTCT+TGG 0.191867 8_4:-1533230 Msa1306570:CDS
TTCTGGGTTGGACCATTTAT+TGG 0.216605 8_4:-1532996 Msa1306570:CDS
GCAAGAGCAGCTCCAATAAA+TGG 0.282926 8_4:+1532984 None:intergenic
GAGCTGCCATCATCTTTAAC+AGG 0.292037 8_4:-1533150 Msa1306570:CDS
GCTAGGTATGAACTGTTTAA+AGG 0.293383 8_4:-1533749 Msa1306570:CDS
TTATTCTGCGTGTGTTACTA+TGG 0.311106 8_4:+1532640 None:intergenic
TACTGCACTGCTGGAATATC+AGG 0.324491 8_4:-1533999 Msa1306570:intron
GTGTAAATTGTTTCCTTCAT+TGG 0.332578 8_4:-1532806 Msa1306570:three_prime_UTR
TTTATGTTAATCCATGATTT+GGG 0.344016 8_4:-1532828 Msa1306570:three_prime_UTR
TTAGTTGACTATTGTACATT+TGG 0.346574 8_4:+1532679 None:intergenic
TGTTCCTCTGTTGGCATTCA+AGG 0.347490 8_4:-1534062 Msa1306570:CDS
TGCTGTGTTCTTGGTCCACT+TGG 0.359026 8_4:-1533221 Msa1306570:CDS
CTTTGGGCTGCTGTCCCTAA+TGG 0.359259 8_4:+1534251 None:intergenic
GCCCTTGTCTACTGCACTGC+TGG 0.363459 8_4:-1534008 Msa1306570:CDS
GTAGTCTTTGCTGTCACTTT+GGG 0.366503 8_4:+1534235 None:intergenic
GTTTATTCAAATATATTAAG+AGG 0.379590 8_4:+1532564 None:intergenic
TTAATGCCTGTTCCTGTGAT+TGG 0.393415 8_4:+1533190 None:intergenic
ATAAACCCTGCTGTGACATT+TGG 0.394638 8_4:-1533881 Msa1306570:CDS
TCTTTAACAGGGACTTTGCT+TGG 0.396893 8_4:-1533138 Msa1306570:CDS
GACACCCATGACAGTCAAAA+TGG 0.399657 8_4:+1534103 None:intergenic
TCTTGGCTCCTCTTCCCATT+GGG 0.400657 8_4:-1533246 Msa1306570:CDS
TTCTCAGAGAGGCAGCCATT+AGG 0.401275 8_4:-1534266 Msa1306570:CDS
CTTGGTGCTATTTGTGGTGC+TGG 0.401687 8_4:-1533797 Msa1306570:CDS
CAATGTCTTGGTGCTATTTG+TGG 0.402335 8_4:-1533803 Msa1306570:CDS
AAGAAGAGAGAGAGTAAGAA+TGG 0.404359 8_4:-1534324 Msa1306570:exon
AATGCCAACAGAGGAACATT+TGG 0.407248 8_4:+1534067 None:intergenic
TCTCAGAGAGGCAGCCATTA+GGG 0.408528 8_4:-1534265 Msa1306570:CDS
AAGGAGGAAGATGTGAAAGT+TGG 0.409979 8_4:-1534299 Msa1306570:CDS
ATCTTGGCTCCTCTTCCCAT+TGG 0.412469 8_4:-1533247 Msa1306570:CDS
TGTAGTCTTTGCTGTCACTT+TGG 0.414094 8_4:+1534234 None:intergenic
AACAATTTACACCCAAATCA+TGG 0.416415 8_4:+1532817 None:intergenic
CTTTAACAGGGACTTTGCTT+GGG 0.419659 8_4:-1533137 Msa1306570:CDS
ACCATTCCAATCACAGGAAC+AGG 0.439708 8_4:-1533196 Msa1306570:CDS
GAATGGCTCGGATGACAATC+TGG 0.440088 8_4:+1532949 None:intergenic
TTGTGGTGCTGGTGTGGTGA+AGG 0.443603 8_4:-1533786 Msa1306570:CDS
TTGGCATTCAAGGTATTGCT+TGG 0.445934 8_4:-1534052 Msa1306570:CDS
AAACGTGATATCTGCACTCT+TGG 0.458620 8_4:+1532709 None:intergenic
CCATCACCTTTAGTGTATCC+AGG 0.469714 8_4:+1533707 None:intergenic
TGTGGTGCTGGTGTGGTGAA+GGG 0.479619 8_4:-1533785 Msa1306570:CDS
CCAGCTCCATTCTTTGAACC+TGG 0.482414 8_4:-1534200 Msa1306570:CDS
GTGAATCCTGGATACACTAA+AGG 0.482977 8_4:-1533713 Msa1306570:CDS
GACCATGACTTGAGCTCACC+AGG 0.486918 8_4:+1534182 None:intergenic
TTCTTCTAAGTGACCAATGA+AGG 0.498573 8_4:+1532793 None:intergenic
TTTATTCAAATATATTAAGA+GGG 0.499188 8_4:+1532565 None:intergenic
AGCTCACCAGGTTCAAAGAA+TGG 0.499372 8_4:+1534194 None:intergenic
AGAGTCTCTAGCATTTCTCT+TGG 0.499778 8_4:+1533622 None:intergenic
AAAGTCCCTGTTAAAGATGA+TGG 0.503711 8_4:+1533144 None:intergenic
AGAGAGAGTAAGAATGGAGA+AGG 0.505737 8_4:-1534318 Msa1306570:exon
CAGTCAAAATGGTGATGTAA+AGG 0.509320 8_4:+1534114 None:intergenic
AACAGACCAAATGTCACAGC+AGG 0.509644 8_4:+1533875 None:intergenic
ACCTCCAAATGTTCCTCTGT+TGG 0.509764 8_4:-1534071 Msa1306570:CDS
GAGAGTAAGAATGGAGAAGG+AGG 0.517379 8_4:-1534315 Msa1306570:exon
GCAGCTCCAAGACTCCTAGC+TGG 0.521224 8_4:+1533166 None:intergenic
GCCAACAGAGGAACATTTGG+AGG 0.524215 8_4:+1534070 None:intergenic
TGCTATTTGTGGTGCTGGTG+TGG 0.526494 8_4:-1533792 Msa1306570:CDS
ATTGGTCACTTAGAAGAATG+TGG 0.527381 8_4:-1532788 Msa1306570:three_prime_UTR
ATTAACCCAGCTAGGAGTCT+TGG 0.528660 8_4:-1533172 Msa1306570:CDS
TTCCAGCAGTGCAGTAGACA+AGG 0.538007 8_4:+1534006 None:intergenic
GGACTTGGAGCTGAGATTGT+TGG 0.540230 8_4:-1533686 Msa1306570:CDS
AAGAACACAGCAAACCCAAT+GGG 0.541932 8_4:+1533232 None:intergenic
TCAAAGAATGGAGCTGGTGG+TGG 0.542478 8_4:+1534206 None:intergenic
CCTCAGGTCCTTGTCTTGAA+AGG 0.542853 8_4:+1532927 None:intergenic
CCAGGTTCAAAGAATGGAGC+TGG 0.545752 8_4:+1534200 None:intergenic
ACAGCAAACCCAATGGGAAG+AGG 0.548821 8_4:+1533238 None:intergenic
TTGCAGTGGATATTCTGGGT+TGG 0.548834 8_4:-1533008 Msa1306570:intron
TACACTAAAGGTGATGGACT+TGG 0.556791 8_4:-1533701 Msa1306570:CDS
CCTGGATACACTAAAGGTGA+TGG 0.566370 8_4:-1533707 Msa1306570:CDS
CAAGAACACAGCAAACCCAA+TGG 0.568082 8_4:+1533231 None:intergenic
TACATTGTGATGCAATGTCT+TGG 0.571531 8_4:-1533815 Msa1306570:CDS
GATGTAAAGGAACAAGAAAG+TGG 0.573621 8_4:+1534127 None:intergenic
TTGTCTTGAAAGGAATGGCT+CGG 0.574695 8_4:+1532937 None:intergenic
GGTCCTTGTCTTGAAAGGAA+TGG 0.577153 8_4:+1532932 None:intergenic
CAGCTCCAAGACTCCTAGCT+GGG 0.583912 8_4:+1533167 None:intergenic
CAAACACAGATAAGAGCCTC+AGG 0.584886 8_4:+1532911 None:intergenic
TTGGCTACCATTCCAATCAC+AGG 0.604120 8_4:-1533202 Msa1306570:CDS
AACCTGGTGAGCTCAAGTCA+TGG 0.607189 8_4:-1534184 Msa1306570:CDS
CTGCGTGTGTTACTATGGAA+TGG 0.626123 8_4:+1532645 None:intergenic
AGCTGCCATCATCTTTAACA+GGG 0.632590 8_4:-1533149 Msa1306570:CDS
CCTTTCAAGACAAGGACCTG+AGG 0.635312 8_4:-1532927 Msa1306570:exon
GCCTGTTCCTGTGATTGGAA+TGG 0.635477 8_4:+1533195 None:intergenic
GAACAGGCATTAACCCAGCT+AGG 0.644423 8_4:-1533180 Msa1306570:CDS
TCCAGCAGTGCAGTAGACAA+GGG 0.651759 8_4:+1534007 None:intergenic
GGTTCAAAGAATGGAGCTGG+TGG 0.653748 8_4:+1534203 None:intergenic
GAGCCATTCCTTTCAAGACA+AGG 0.654804 8_4:-1532935 Msa1306570:CDS
AATACCTTGAATGCCAACAG+AGG 0.688113 8_4:+1534058 None:intergenic
ACAGACCAAATGTCACAGCA+GGG 0.700234 8_4:+1533876 None:intergenic
GAGCAAACAAATTCTCAGAG+AGG 0.712701 8_4:-1534277 Msa1306570:CDS
AGGTATGAACTGTTTAAAGG+TGG 0.726401 8_4:-1533746 Msa1306570:CDS
TGATTGGAATGGTAGCCAAG+TGG 0.737998 8_4:+1533206 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTGTTCATAAAAATA+AGG + chr8_4:1533812-1533831 None:intergenic 10.0%
!! TTTATTCAAATATATTAAGA+GGG + chr8_4:1534338-1534357 None:intergenic 10.0%
!!! AAATTTTGTTCATAAAAATA+AGG + chr8_4:1533812-1533831 None:intergenic 10.0%
!! TTTATTCAAATATATTAAGA+GGG + chr8_4:1534338-1534357 None:intergenic 10.0%
!! AAGAAATCAAAAAATAGAAA+AGG + chr8_4:1533327-1533346 None:intergenic 15.0%
!!! ACTTATAATTTATTTTCCTA+AGG + chr8_4:1533380-1533399 None:intergenic 15.0%
!!! CTATATATTTTAGTTATTTG+TGG - chr8_4:1533475-1533494 Msa1306570:intron 15.0%
!! GTTTATTCAAATATATTAAG+AGG + chr8_4:1534339-1534358 None:intergenic 15.0%
!! AAGAAATCAAAAAATAGAAA+AGG + chr8_4:1533327-1533346 None:intergenic 15.0%
!!! ACTTATAATTTATTTTCCTA+AGG + chr8_4:1533380-1533399 None:intergenic 15.0%
!!! CTATATATTTTAGTTATTTG+TGG - chr8_4:1533475-1533494 Msa1306570:intron 15.0%
!! GTTTATTCAAATATATTAAG+AGG + chr8_4:1534339-1534358 None:intergenic 15.0%
!!! TTTTATGTTAATCCATGATT+TGG - chr8_4:1534071-1534090 Msa1306570:CDS 20.0%
!! TTTATGTTAATCCATGATTT+GGG - chr8_4:1534072-1534091 Msa1306570:CDS 20.0%
!!! TTTTATGTTAATCCATGATT+TGG - chr8_4:1534071-1534090 Msa1306570:CDS 20.0%
!! TTTATGTTAATCCATGATTT+GGG - chr8_4:1534072-1534091 Msa1306570:CDS 20.0%
! ATGTTAATAGCCAAGAATAA+TGG - chr8_4:1532963-1532982 Msa1306570:CDS 25.0%
!!! CATTTTTTTTCCTTCCAATT+AGG - chr8_4:1533410-1533429 Msa1306570:intron 25.0%
! CAAAGTTAAAAAGTCCTAAT+TGG + chr8_4:1533427-1533446 None:intergenic 25.0%
!!! CAATTAGGACTTTTTAACTT+TGG - chr8_4:1533425-1533444 Msa1306570:intron 25.0%
! TTCTAACTCTAATTTCAATG+TGG - chr8_4:1533607-1533626 Msa1306570:intron 25.0%
!! TTCAATGTGGTTATTCTTTT+TGG - chr8_4:1533620-1533639 Msa1306570:CDS 25.0%
!! TCAATGTGGTTATTCTTTTT+GGG - chr8_4:1533621-1533640 Msa1306570:CDS 25.0%
! TTAGTTGACTATTGTACATT+TGG + chr8_4:1534224-1534243 None:intergenic 25.0%
!! AAACTTTTCCAATAAAAGCT+TGG - chr8_4:1534282-1534301 Msa1306570:CDS 25.0%
! CTCTAATTTCATAGTGTATT+TGG - chr8_4:1534358-1534377 Msa1306570:five_prime_UTR 25.0%
! ATGTTAATAGCCAAGAATAA+TGG - chr8_4:1532963-1532982 Msa1306570:CDS 25.0%
!!! CATTTTTTTTCCTTCCAATT+AGG - chr8_4:1533410-1533429 Msa1306570:intron 25.0%
! CAAAGTTAAAAAGTCCTAAT+TGG + chr8_4:1533427-1533446 None:intergenic 25.0%
!!! CAATTAGGACTTTTTAACTT+TGG - chr8_4:1533425-1533444 Msa1306570:intron 25.0%
! TTCTAACTCTAATTTCAATG+TGG - chr8_4:1533607-1533626 Msa1306570:intron 25.0%
!! TTCAATGTGGTTATTCTTTT+TGG - chr8_4:1533620-1533639 Msa1306570:CDS 25.0%
!! TCAATGTGGTTATTCTTTTT+GGG - chr8_4:1533621-1533640 Msa1306570:CDS 25.0%
! TTAGTTGACTATTGTACATT+TGG + chr8_4:1534224-1534243 None:intergenic 25.0%
!! AAACTTTTCCAATAAAAGCT+TGG - chr8_4:1534282-1534301 Msa1306570:CDS 25.0%
! CTCTAATTTCATAGTGTATT+TGG - chr8_4:1534358-1534377 Msa1306570:five_prime_UTR 25.0%
AAAAGGAAATGAAGACATAC+AGG + chr8_4:1533310-1533329 None:intergenic 30.0%
GTTAAAAAGTCCTAATTGGA+AGG + chr8_4:1533423-1533442 None:intergenic 30.0%
! GATCTATTTTCTGCATATAC+TGG - chr8_4:1533547-1533566 Msa1306570:intron 30.0%
TTTCTGCATATACTGGTATA+TGG - chr8_4:1533554-1533573 Msa1306570:intron 30.0%
! CAATGTGGTTATTCTTTTTG+GGG - chr8_4:1533622-1533641 Msa1306570:CDS 30.0%
!! TTTTGGGGAATTATAGATCT+TGG - chr8_4:1533637-1533656 Msa1306570:CDS 30.0%
AAGGTGATAGAAAACATACA+TGG + chr8_4:1533793-1533812 None:intergenic 30.0%
!!! TTATTGATGATGTTTTGCAG+TGG - chr8_4:1533878-1533897 Msa1306570:CDS 30.0%
!! TTGTGTCGTCTTTTTCATTA+AGG - chr8_4:1534031-1534050 Msa1306570:CDS 30.0%
!! TGTGTCGTCTTTTTCATTAA+GGG - chr8_4:1534032-1534051 Msa1306570:CDS 30.0%
AACAATTTACACCCAAATCA+TGG + chr8_4:1534086-1534105 None:intergenic 30.0%
GTGTAAATTGTTTCCTTCAT+TGG - chr8_4:1534094-1534113 Msa1306570:CDS 30.0%
! TGCATTTTCCAAGCTTTTAT+TGG + chr8_4:1534293-1534312 None:intergenic 30.0%
AAAAGGAAATGAAGACATAC+AGG + chr8_4:1533310-1533329 None:intergenic 30.0%
GTTAAAAAGTCCTAATTGGA+AGG + chr8_4:1533423-1533442 None:intergenic 30.0%
! GATCTATTTTCTGCATATAC+TGG - chr8_4:1533547-1533566 Msa1306570:intron 30.0%
TTTCTGCATATACTGGTATA+TGG - chr8_4:1533554-1533573 Msa1306570:intron 30.0%
! CAATGTGGTTATTCTTTTTG+GGG - chr8_4:1533622-1533641 Msa1306570:CDS 30.0%
!! TTTTGGGGAATTATAGATCT+TGG - chr8_4:1533637-1533656 Msa1306570:CDS 30.0%
AAGGTGATAGAAAACATACA+TGG + chr8_4:1533793-1533812 None:intergenic 30.0%
!!! TTATTGATGATGTTTTGCAG+TGG - chr8_4:1533878-1533897 Msa1306570:CDS 30.0%
!! TTGTGTCGTCTTTTTCATTA+AGG - chr8_4:1534031-1534050 Msa1306570:CDS 30.0%
!! TGTGTCGTCTTTTTCATTAA+GGG - chr8_4:1534032-1534051 Msa1306570:CDS 30.0%
AACAATTTACACCCAAATCA+TGG + chr8_4:1534086-1534105 None:intergenic 30.0%
GTGTAAATTGTTTCCTTCAT+TGG - chr8_4:1534094-1534113 Msa1306570:CDS 30.0%
! TGCATTTTCCAAGCTTTTAT+TGG + chr8_4:1534293-1534312 None:intergenic 30.0%
AAGAAGAGAGAGAGTAAGAA+TGG - chr8_4:1532576-1532595 Msa1306570:three_prime_UTR 35.0%
GATGTAAAGGAACAAGAAAG+TGG + chr8_4:1532776-1532795 None:intergenic 35.0%
! CAGTCAAAATGGTGATGTAA+AGG + chr8_4:1532789-1532808 None:intergenic 35.0%
!!! ATCACCATTTTGACTGTCAT+GGG - chr8_4:1532793-1532812 Msa1306570:three_prime_UTR 35.0%
!!! AAGGTATTGCTTGGTCTTTT+GGG - chr8_4:1532857-1532876 Msa1306570:three_prime_UTR 35.0%
CACAGATCTACCATTATTCT+TGG + chr8_4:1532976-1532995 None:intergenic 35.0%
!! ATCTGTGTGTTGTTTGTGAT+AGG - chr8_4:1532989-1533008 Msa1306570:CDS 35.0%
! TGTGACATTTGGTCTGTTTT+TGG - chr8_4:1533030-1533049 Msa1306570:intron 35.0%
TACATTGTGATGCAATGTCT+TGG - chr8_4:1533085-1533104 Msa1306570:intron 35.0%
GCTAGGTATGAACTGTTTAA+AGG - chr8_4:1533151-1533170 Msa1306570:CDS 35.0%
AGGTATGAACTGTTTAAAGG+TGG - chr8_4:1533154-1533173 Msa1306570:CDS 35.0%
AAAGTCCCTGTTAAAGATGA+TGG + chr8_4:1533759-1533778 None:intergenic 35.0%
! ATGTTTTGCAGTGGATATTC+TGG - chr8_4:1533887-1533906 Msa1306570:CDS 35.0%
! TGTTTTGCAGTGGATATTCT+GGG - chr8_4:1533888-1533907 Msa1306570:CDS 35.0%
TTCTTCTAAGTGACCAATGA+AGG + chr8_4:1534110-1534129 None:intergenic 35.0%
ATTGGTCACTTAGAAGAATG+TGG - chr8_4:1534112-1534131 Msa1306570:CDS 35.0%
! TGCACTCTTGGAATTTTGAA+AGG + chr8_4:1534182-1534201 None:intergenic 35.0%
! TTATTCTGCGTGTGTTACTA+TGG + chr8_4:1534263-1534282 None:intergenic 35.0%
AAGAAGAGAGAGAGTAAGAA+TGG - chr8_4:1532576-1532595 Msa1306570:three_prime_UTR 35.0%
GATGTAAAGGAACAAGAAAG+TGG + chr8_4:1532776-1532795 None:intergenic 35.0%
! CAGTCAAAATGGTGATGTAA+AGG + chr8_4:1532789-1532808 None:intergenic 35.0%
!!! ATCACCATTTTGACTGTCAT+GGG - chr8_4:1532793-1532812 Msa1306570:three_prime_UTR 35.0%
!!! AAGGTATTGCTTGGTCTTTT+GGG - chr8_4:1532857-1532876 Msa1306570:three_prime_UTR 35.0%
CACAGATCTACCATTATTCT+TGG + chr8_4:1532976-1532995 None:intergenic 35.0%
!! ATCTGTGTGTTGTTTGTGAT+AGG - chr8_4:1532989-1533008 Msa1306570:CDS 35.0%
! TGTGACATTTGGTCTGTTTT+TGG - chr8_4:1533030-1533049 Msa1306570:intron 35.0%
TACATTGTGATGCAATGTCT+TGG - chr8_4:1533085-1533104 Msa1306570:intron 35.0%
GCTAGGTATGAACTGTTTAA+AGG - chr8_4:1533151-1533170 Msa1306570:CDS 35.0%
AGGTATGAACTGTTTAAAGG+TGG - chr8_4:1533154-1533173 Msa1306570:CDS 35.0%
AAAGTCCCTGTTAAAGATGA+TGG + chr8_4:1533759-1533778 None:intergenic 35.0%
! ATGTTTTGCAGTGGATATTC+TGG - chr8_4:1533887-1533906 Msa1306570:CDS 35.0%
! TGTTTTGCAGTGGATATTCT+GGG - chr8_4:1533888-1533907 Msa1306570:CDS 35.0%
TTCTTCTAAGTGACCAATGA+AGG + chr8_4:1534110-1534129 None:intergenic 35.0%
ATTGGTCACTTAGAAGAATG+TGG - chr8_4:1534112-1534131 Msa1306570:CDS 35.0%
! TGCACTCTTGGAATTTTGAA+AGG + chr8_4:1534182-1534201 None:intergenic 35.0%
! TTATTCTGCGTGTGTTACTA+TGG + chr8_4:1534263-1534282 None:intergenic 35.0%
AGAGAGAGTAAGAATGGAGA+AGG - chr8_4:1532582-1532601 Msa1306570:three_prime_UTR 40.0%
AAGGAGGAAGATGTGAAAGT+TGG - chr8_4:1532601-1532620 Msa1306570:three_prime_UTR 40.0%
GAGCAAACAAATTCTCAGAG+AGG - chr8_4:1532623-1532642 Msa1306570:three_prime_UTR 40.0%
!! GTAGTCTTTGCTGTCACTTT+GGG + chr8_4:1532668-1532687 None:intergenic 40.0%
! TGTAGTCTTTGCTGTCACTT+TGG + chr8_4:1532669-1532688 None:intergenic 40.0%
! TCATGGTCTTTTTACAGAGC+TGG - chr8_4:1532733-1532752 Msa1306570:three_prime_UTR 40.0%
!!! CATCACCATTTTGACTGTCA+TGG - chr8_4:1532792-1532811 Msa1306570:three_prime_UTR 40.0%
AATGCCAACAGAGGAACATT+TGG + chr8_4:1532836-1532855 None:intergenic 40.0%
AATACCTTGAATGCCAACAG+AGG + chr8_4:1532845-1532864 None:intergenic 40.0%
!! TTGGCATTCAAGGTATTGCT+TGG - chr8_4:1532848-1532867 Msa1306570:three_prime_UTR 40.0%
!!! CAAGGTATTGCTTGGTCTTT+TGG - chr8_4:1532856-1532875 Msa1306570:three_prime_UTR 40.0%
!! AGGTATTGCTTGGTCTTTTG+GGG - chr8_4:1532858-1532877 Msa1306570:three_prime_UTR 40.0%
!! TGTGTGTTGTTTGTGATAGG+TGG - chr8_4:1532992-1533011 Msa1306570:CDS 40.0%
ATAAACCCTGCTGTGACATT+TGG - chr8_4:1533019-1533038 Msa1306570:intron 40.0%
!!! CATTTGGTCTGTTTTTGGCA+AGG - chr8_4:1533035-1533054 Msa1306570:intron 40.0%
!! CAATGTCTTGGTGCTATTTG+TGG - chr8_4:1533097-1533116 Msa1306570:intron 40.0%
!!! AGGGTTTTGAAGGTAATGCT+AGG - chr8_4:1533134-1533153 Msa1306570:CDS 40.0%
! GGTGCTAATTTTGTGAATCC+TGG - chr8_4:1533175-1533194 Msa1306570:CDS 40.0%
GTGAATCCTGGATACACTAA+AGG - chr8_4:1533187-1533206 Msa1306570:CDS 40.0%
!! TACACTAAAGGTGATGGACT+TGG - chr8_4:1533199-1533218 Msa1306570:CDS 40.0%
AGAGTCTCTAGCATTTCTCT+TGG + chr8_4:1533281-1533300 None:intergenic 40.0%
! GTGTGCTGAAAGTTTTCCTT+AGG - chr8_4:1533361-1533380 Msa1306570:intron 40.0%
AAGAACACAGCAAACCCAAT+GGG + chr8_4:1533671-1533690 None:intergenic 40.0%
TTAATGCCTGTTCCTGTGAT+TGG + chr8_4:1533713-1533732 None:intergenic 40.0%
AGCTGCCATCATCTTTAACA+GGG - chr8_4:1533751-1533770 Msa1306570:CDS 40.0%
TCTTTAACAGGGACTTTGCT+TGG - chr8_4:1533762-1533781 Msa1306570:CDS 40.0%
CTTTAACAGGGACTTTGCTT+GGG - chr8_4:1533763-1533782 Msa1306570:CDS 40.0%
! TTCTGGGTTGGACCATTTAT+TGG - chr8_4:1533904-1533923 Msa1306570:intron 40.0%
TTGTCTTGAAAGGAATGGCT+CGG + chr8_4:1533966-1533985 None:intergenic 40.0%
AAACGTGATATCTGCACTCT+TGG + chr8_4:1534194-1534213 None:intergenic 40.0%
AGAGAGAGTAAGAATGGAGA+AGG - chr8_4:1532582-1532601 Msa1306570:three_prime_UTR 40.0%
AAGGAGGAAGATGTGAAAGT+TGG - chr8_4:1532601-1532620 Msa1306570:three_prime_UTR 40.0%
GAGCAAACAAATTCTCAGAG+AGG - chr8_4:1532623-1532642 Msa1306570:three_prime_UTR 40.0%
!! GTAGTCTTTGCTGTCACTTT+GGG + chr8_4:1532668-1532687 None:intergenic 40.0%
! TGTAGTCTTTGCTGTCACTT+TGG + chr8_4:1532669-1532688 None:intergenic 40.0%
! TCATGGTCTTTTTACAGAGC+TGG - chr8_4:1532733-1532752 Msa1306570:three_prime_UTR 40.0%
!!! CATCACCATTTTGACTGTCA+TGG - chr8_4:1532792-1532811 Msa1306570:three_prime_UTR 40.0%
AATGCCAACAGAGGAACATT+TGG + chr8_4:1532836-1532855 None:intergenic 40.0%
AATACCTTGAATGCCAACAG+AGG + chr8_4:1532845-1532864 None:intergenic 40.0%
!! TTGGCATTCAAGGTATTGCT+TGG - chr8_4:1532848-1532867 Msa1306570:three_prime_UTR 40.0%
!!! CAAGGTATTGCTTGGTCTTT+TGG - chr8_4:1532856-1532875 Msa1306570:three_prime_UTR 40.0%
!! AGGTATTGCTTGGTCTTTTG+GGG - chr8_4:1532858-1532877 Msa1306570:three_prime_UTR 40.0%
!! TGTGTGTTGTTTGTGATAGG+TGG - chr8_4:1532992-1533011 Msa1306570:CDS 40.0%
ATAAACCCTGCTGTGACATT+TGG - chr8_4:1533019-1533038 Msa1306570:intron 40.0%
!!! CATTTGGTCTGTTTTTGGCA+AGG - chr8_4:1533035-1533054 Msa1306570:intron 40.0%
!! CAATGTCTTGGTGCTATTTG+TGG - chr8_4:1533097-1533116 Msa1306570:intron 40.0%
!!! AGGGTTTTGAAGGTAATGCT+AGG - chr8_4:1533134-1533153 Msa1306570:CDS 40.0%
! GGTGCTAATTTTGTGAATCC+TGG - chr8_4:1533175-1533194 Msa1306570:CDS 40.0%
GTGAATCCTGGATACACTAA+AGG - chr8_4:1533187-1533206 Msa1306570:CDS 40.0%
!! TACACTAAAGGTGATGGACT+TGG - chr8_4:1533199-1533218 Msa1306570:CDS 40.0%
AGAGTCTCTAGCATTTCTCT+TGG + chr8_4:1533281-1533300 None:intergenic 40.0%
! GTGTGCTGAAAGTTTTCCTT+AGG - chr8_4:1533361-1533380 Msa1306570:intron 40.0%
AAGAACACAGCAAACCCAAT+GGG + chr8_4:1533671-1533690 None:intergenic 40.0%
TTAATGCCTGTTCCTGTGAT+TGG + chr8_4:1533713-1533732 None:intergenic 40.0%
AGCTGCCATCATCTTTAACA+GGG - chr8_4:1533751-1533770 Msa1306570:CDS 40.0%
TCTTTAACAGGGACTTTGCT+TGG - chr8_4:1533762-1533781 Msa1306570:CDS 40.0%
CTTTAACAGGGACTTTGCTT+GGG - chr8_4:1533763-1533782 Msa1306570:CDS 40.0%
! TTCTGGGTTGGACCATTTAT+TGG - chr8_4:1533904-1533923 Msa1306570:intron 40.0%
TTGTCTTGAAAGGAATGGCT+CGG + chr8_4:1533966-1533985 None:intergenic 40.0%
AAACGTGATATCTGCACTCT+TGG + chr8_4:1534194-1534213 None:intergenic 40.0%
GAGAGTAAGAATGGAGAAGG+AGG - chr8_4:1532585-1532604 Msa1306570:three_prime_UTR 45.0%
AGCTCACCAGGTTCAAAGAA+TGG + chr8_4:1532709-1532728 None:intergenic 45.0%
GACACCCATGACAGTCAAAA+TGG + chr8_4:1532800-1532819 None:intergenic 45.0%
ACCTCCAAATGTTCCTCTGT+TGG - chr8_4:1532829-1532848 Msa1306570:three_prime_UTR 45.0%
TGTTCCTCTGTTGGCATTCA+AGG - chr8_4:1532838-1532857 Msa1306570:three_prime_UTR 45.0%
!! GGTATTGCTTGGTCTTTTGG+GGG - chr8_4:1532859-1532878 Msa1306570:three_prime_UTR 45.0%
TACTGCACTGCTGGAATATC+AGG - chr8_4:1532901-1532920 Msa1306570:three_prime_UTR 45.0%
ACAGACCAAATGTCACAGCA+GGG + chr8_4:1533027-1533046 None:intergenic 45.0%
AACAGACCAAATGTCACAGC+AGG + chr8_4:1533028-1533047 None:intergenic 45.0%
CCATCACCTTTAGTGTATCC+AGG + chr8_4:1533196-1533215 None:intergenic 45.0%
CCTGGATACACTAAAGGTGA+TGG - chr8_4:1533193-1533212 Msa1306570:CDS 45.0%
CAAGAACACAGCAAACCCAA+TGG + chr8_4:1533672-1533691 None:intergenic 45.0%
!! CATTGGGTTTGCTGTGTTCT+TGG - chr8_4:1533670-1533689 Msa1306570:CDS 45.0%
TGATTGGAATGGTAGCCAAG+TGG + chr8_4:1533697-1533716 None:intergenic 45.0%
TTGGCTACCATTCCAATCAC+AGG - chr8_4:1533698-1533717 Msa1306570:CDS 45.0%
ACCATTCCAATCACAGGAAC+AGG - chr8_4:1533704-1533723 Msa1306570:CDS 45.0%
ATTAACCCAGCTAGGAGTCT+TGG - chr8_4:1533728-1533747 Msa1306570:CDS 45.0%
GAGCTGCCATCATCTTTAAC+AGG - chr8_4:1533750-1533769 Msa1306570:CDS 45.0%
TTGCAGTGGATATTCTGGGT+TGG - chr8_4:1533892-1533911 Msa1306570:CDS 45.0%
GCAAGAGCAGCTCCAATAAA+TGG + chr8_4:1533919-1533938 None:intergenic 45.0%
GAGCCATTCCTTTCAAGACA+AGG - chr8_4:1533965-1533984 Msa1306570:intron 45.0%
GGTCCTTGTCTTGAAAGGAA+TGG + chr8_4:1533971-1533990 None:intergenic 45.0%
CAAACACAGATAAGAGCCTC+AGG + chr8_4:1533992-1534011 None:intergenic 45.0%
! CTGCGTGTGTTACTATGGAA+TGG + chr8_4:1534258-1534277 None:intergenic 45.0%
GAGAGTAAGAATGGAGAAGG+AGG - chr8_4:1532585-1532604 Msa1306570:three_prime_UTR 45.0%
AGCTCACCAGGTTCAAAGAA+TGG + chr8_4:1532709-1532728 None:intergenic 45.0%
GACACCCATGACAGTCAAAA+TGG + chr8_4:1532800-1532819 None:intergenic 45.0%
ACCTCCAAATGTTCCTCTGT+TGG - chr8_4:1532829-1532848 Msa1306570:three_prime_UTR 45.0%
TGTTCCTCTGTTGGCATTCA+AGG - chr8_4:1532838-1532857 Msa1306570:three_prime_UTR 45.0%
!! GGTATTGCTTGGTCTTTTGG+GGG - chr8_4:1532859-1532878 Msa1306570:three_prime_UTR 45.0%
TACTGCACTGCTGGAATATC+AGG - chr8_4:1532901-1532920 Msa1306570:three_prime_UTR 45.0%
ACAGACCAAATGTCACAGCA+GGG + chr8_4:1533027-1533046 None:intergenic 45.0%
AACAGACCAAATGTCACAGC+AGG + chr8_4:1533028-1533047 None:intergenic 45.0%
CCATCACCTTTAGTGTATCC+AGG + chr8_4:1533196-1533215 None:intergenic 45.0%
CCTGGATACACTAAAGGTGA+TGG - chr8_4:1533193-1533212 Msa1306570:CDS 45.0%
CAAGAACACAGCAAACCCAA+TGG + chr8_4:1533672-1533691 None:intergenic 45.0%
!! CATTGGGTTTGCTGTGTTCT+TGG - chr8_4:1533670-1533689 Msa1306570:CDS 45.0%
TGATTGGAATGGTAGCCAAG+TGG + chr8_4:1533697-1533716 None:intergenic 45.0%
TTGGCTACCATTCCAATCAC+AGG - chr8_4:1533698-1533717 Msa1306570:CDS 45.0%
ACCATTCCAATCACAGGAAC+AGG - chr8_4:1533704-1533723 Msa1306570:CDS 45.0%
ATTAACCCAGCTAGGAGTCT+TGG - chr8_4:1533728-1533747 Msa1306570:CDS 45.0%
GAGCTGCCATCATCTTTAAC+AGG - chr8_4:1533750-1533769 Msa1306570:CDS 45.0%
TTGCAGTGGATATTCTGGGT+TGG - chr8_4:1533892-1533911 Msa1306570:CDS 45.0%
GCAAGAGCAGCTCCAATAAA+TGG + chr8_4:1533919-1533938 None:intergenic 45.0%
GAGCCATTCCTTTCAAGACA+AGG - chr8_4:1533965-1533984 Msa1306570:intron 45.0%
GGTCCTTGTCTTGAAAGGAA+TGG + chr8_4:1533971-1533990 None:intergenic 45.0%
CAAACACAGATAAGAGCCTC+AGG + chr8_4:1533992-1534011 None:intergenic 45.0%
! CTGCGTGTGTTACTATGGAA+TGG + chr8_4:1534258-1534277 None:intergenic 45.0%
!! AAAAATTAAATAATATTGTA+AGG + chr8_4:1532933-1532952 None:intergenic 5.0%
!! AAAAATTAAATAATATTGTA+AGG + chr8_4:1532933-1532952 None:intergenic 5.0%
TTCTCAGAGAGGCAGCCATT+AGG - chr8_4:1532634-1532653 Msa1306570:three_prime_UTR 50.0%
TCTCAGAGAGGCAGCCATTA+GGG - chr8_4:1532635-1532654 Msa1306570:three_prime_UTR 50.0%
TCAAAGAATGGAGCTGGTGG+TGG + chr8_4:1532697-1532716 None:intergenic 50.0%
GGTTCAAAGAATGGAGCTGG+TGG + chr8_4:1532700-1532719 None:intergenic 50.0%
CCAGGTTCAAAGAATGGAGC+TGG + chr8_4:1532703-1532722 None:intergenic 50.0%
CCAGCTCCATTCTTTGAACC+TGG - chr8_4:1532700-1532719 Msa1306570:three_prime_UTR 50.0%
AACCTGGTGAGCTCAAGTCA+TGG - chr8_4:1532716-1532735 Msa1306570:three_prime_UTR 50.0%
GCCAACAGAGGAACATTTGG+AGG + chr8_4:1532833-1532852 None:intergenic 50.0%
TCCAGCAGTGCAGTAGACAA+GGG + chr8_4:1532896-1532915 None:intergenic 50.0%
TTCCAGCAGTGCAGTAGACA+AGG + chr8_4:1532897-1532916 None:intergenic 50.0%
!! CTTGGTGCTATTTGTGGTGC+TGG - chr8_4:1533103-1533122 Msa1306570:intron 50.0%
!! TGCTATTTGTGGTGCTGGTG+TGG - chr8_4:1533108-1533127 Msa1306570:intron 50.0%
!! GGTGTGGTGAAGGGTTTTGA+AGG - chr8_4:1533124-1533143 Msa1306570:intron 50.0%
GGACTTGGAGCTGAGATTGT+TGG - chr8_4:1533214-1533233 Msa1306570:CDS 50.0%
ATCTTGGCTCCTCTTCCCAT+TGG - chr8_4:1533653-1533672 Msa1306570:CDS 50.0%
TCTTGGCTCCTCTTCCCATT+GGG - chr8_4:1533654-1533673 Msa1306570:CDS 50.0%
ACAGCAAACCCAATGGGAAG+AGG + chr8_4:1533665-1533684 None:intergenic 50.0%
TGCTGTGTTCTTGGTCCACT+TGG - chr8_4:1533679-1533698 Msa1306570:CDS 50.0%
GCCTGTTCCTGTGATTGGAA+TGG + chr8_4:1533708-1533727 None:intergenic 50.0%
GAACAGGCATTAACCCAGCT+AGG - chr8_4:1533720-1533739 Msa1306570:CDS 50.0%
! GAATGGCTCGGATGACAATC+TGG + chr8_4:1533954-1533973 None:intergenic 50.0%
CCTCAGGTCCTTGTCTTGAA+AGG + chr8_4:1533976-1533995 None:intergenic 50.0%
CCTTTCAAGACAAGGACCTG+AGG - chr8_4:1533973-1533992 Msa1306570:intron 50.0%
TTCTCAGAGAGGCAGCCATT+AGG - chr8_4:1532634-1532653 Msa1306570:three_prime_UTR 50.0%
TCTCAGAGAGGCAGCCATTA+GGG - chr8_4:1532635-1532654 Msa1306570:three_prime_UTR 50.0%
TCAAAGAATGGAGCTGGTGG+TGG + chr8_4:1532697-1532716 None:intergenic 50.0%
GGTTCAAAGAATGGAGCTGG+TGG + chr8_4:1532700-1532719 None:intergenic 50.0%
CCAGGTTCAAAGAATGGAGC+TGG + chr8_4:1532703-1532722 None:intergenic 50.0%
CCAGCTCCATTCTTTGAACC+TGG - chr8_4:1532700-1532719 Msa1306570:three_prime_UTR 50.0%
AACCTGGTGAGCTCAAGTCA+TGG - chr8_4:1532716-1532735 Msa1306570:three_prime_UTR 50.0%
GCCAACAGAGGAACATTTGG+AGG + chr8_4:1532833-1532852 None:intergenic 50.0%
TCCAGCAGTGCAGTAGACAA+GGG + chr8_4:1532896-1532915 None:intergenic 50.0%
TTCCAGCAGTGCAGTAGACA+AGG + chr8_4:1532897-1532916 None:intergenic 50.0%
!! CTTGGTGCTATTTGTGGTGC+TGG - chr8_4:1533103-1533122 Msa1306570:intron 50.0%
!! TGCTATTTGTGGTGCTGGTG+TGG - chr8_4:1533108-1533127 Msa1306570:intron 50.0%
!! GGTGTGGTGAAGGGTTTTGA+AGG - chr8_4:1533124-1533143 Msa1306570:intron 50.0%
GGACTTGGAGCTGAGATTGT+TGG - chr8_4:1533214-1533233 Msa1306570:CDS 50.0%
ATCTTGGCTCCTCTTCCCAT+TGG - chr8_4:1533653-1533672 Msa1306570:CDS 50.0%
TCTTGGCTCCTCTTCCCATT+GGG - chr8_4:1533654-1533673 Msa1306570:CDS 50.0%
ACAGCAAACCCAATGGGAAG+AGG + chr8_4:1533665-1533684 None:intergenic 50.0%
TGCTGTGTTCTTGGTCCACT+TGG - chr8_4:1533679-1533698 Msa1306570:CDS 50.0%
GCCTGTTCCTGTGATTGGAA+TGG + chr8_4:1533708-1533727 None:intergenic 50.0%
GAACAGGCATTAACCCAGCT+AGG - chr8_4:1533720-1533739 Msa1306570:CDS 50.0%
! GAATGGCTCGGATGACAATC+TGG + chr8_4:1533954-1533973 None:intergenic 50.0%
CCTCAGGTCCTTGTCTTGAA+AGG + chr8_4:1533976-1533995 None:intergenic 50.0%
CCTTTCAAGACAAGGACCTG+AGG - chr8_4:1533973-1533992 Msa1306570:intron 50.0%
CTTTGGGCTGCTGTCCCTAA+TGG + chr8_4:1532652-1532671 None:intergenic 55.0%
GACCATGACTTGAGCTCACC+AGG + chr8_4:1532721-1532740 None:intergenic 55.0%
!! TTGTGGTGCTGGTGTGGTGA+AGG - chr8_4:1533114-1533133 Msa1306570:intron 55.0%
!! TGTGGTGCTGGTGTGGTGAA+GGG - chr8_4:1533115-1533134 Msa1306570:intron 55.0%
CAGCTCCAAGACTCCTAGCT+GGG + chr8_4:1533736-1533755 None:intergenic 55.0%
CTTTGGGCTGCTGTCCCTAA+TGG + chr8_4:1532652-1532671 None:intergenic 55.0%
GACCATGACTTGAGCTCACC+AGG + chr8_4:1532721-1532740 None:intergenic 55.0%
!! TTGTGGTGCTGGTGTGGTGA+AGG - chr8_4:1533114-1533133 Msa1306570:intron 55.0%
!! TGTGGTGCTGGTGTGGTGAA+GGG - chr8_4:1533115-1533134 Msa1306570:intron 55.0%
CAGCTCCAAGACTCCTAGCT+GGG + chr8_4:1533736-1533755 None:intergenic 55.0%
GCCCTTGTCTACTGCACTGC+TGG - chr8_4:1532892-1532911 Msa1306570:three_prime_UTR 60.0%
GCAGCTCCAAGACTCCTAGC+TGG + chr8_4:1533737-1533756 None:intergenic 60.0%
GCCCTTGTCTACTGCACTGC+TGG - chr8_4:1532892-1532911 Msa1306570:three_prime_UTR 60.0%
GCAGCTCCAAGACTCCTAGC+TGG + chr8_4:1533737-1533756 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 1532523 1534399 1532523 ID=Msa1306570;Name=Msa1306570
chr8_4 mRNA 1532523 1534399 1532523 ID=Msa1306570-mRNA-1;Parent=Msa1306570;Name=Msa1306570-mRNA-1;_AED=0.05;_eAED=0.05;_QI=72|1|1|1|1|1|4|406|287
chr8_4 exon 1532523 1533024 1532523 ID=Msa1306570-mRNA-1:exon:422;Parent=Msa1306570-mRNA-1
chr8_4 exon 1533129 1533269 1533129 ID=Msa1306570-mRNA-1:exon:421;Parent=Msa1306570-mRNA-1
chr8_4 exon 1533613 1533911 1533613 ID=Msa1306570-mRNA-1:exon:420;Parent=Msa1306570-mRNA-1
chr8_4 exon 1534000 1534399 1534000 ID=Msa1306570-mRNA-1:exon:419;Parent=Msa1306570-mRNA-1
chr8_4 five_prime_UTR 1534328 1534399 1534328 ID=Msa1306570-mRNA-1:five_prime_utr;Parent=Msa1306570-mRNA-1
chr8_4 CDS 1534000 1534327 1534000 ID=Msa1306570-mRNA-1:cds;Parent=Msa1306570-mRNA-1
chr8_4 CDS 1533613 1533911 1533613 ID=Msa1306570-mRNA-1:cds;Parent=Msa1306570-mRNA-1
chr8_4 CDS 1533129 1533269 1533129 ID=Msa1306570-mRNA-1:cds;Parent=Msa1306570-mRNA-1
chr8_4 CDS 1532929 1533024 1532929 ID=Msa1306570-mRNA-1:cds;Parent=Msa1306570-mRNA-1
chr8_4 three_prime_UTR 1532523 1532928 1532523 ID=Msa1306570-mRNA-1:three_prime_utr;Parent=Msa1306570-mRNA-1
Gene Sequence

>Msa1306570

ATGGAGAAGGAGGAAGATGTGAAAGTTGGAGCAAACAAATTCTCAGAGAGGCAGCCATTAGGGACAGCAGCCCAAAGTGACAGCAAAGACTACAAAGAGCCACCACCAGCTCCATTCTTTGAACCTGGTGAGCTCAAGTCATGGTCTTTTTACAGAGCTGGAATTGCTGAGTTCATAGCCACTTTCTTGTTCCTTTACATCACCATTTTGACTGTCATGGGTGTCAACAGATCAACCTCCAAATGTTCCTCTGTTGGCATTCAAGGTATTGCTTGGTCTTTTGGGGGTATGATATTTGCCCTTGTCTACTGCACTGCTGGAATATCAGGTGGACACATAAACCCTGCTGTGACATTTGGTCTGTTTTTGGCAAGGAAGCTGTCACTTACAAGAGCTATATTCTACATTGTGATGCAATGTCTTGGTGCTATTTGTGGTGCTGGTGTGGTGAAGGGTTTTGAAGGTAATGCTAGGTATGAACTGTTTAAAGGTGGTGCTAATTTTGTGAATCCTGGATACACTAAAGGTGATGGACTTGGAGCTGAGATTGTTGGTACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACTGATGCCAAGAGAAATGCTAGAGACTCTCATGTTCCTATCTTGGCTCCTCTTCCCATTGGGTTTGCTGTGTTCTTGGTCCACTTGGCTACCATTCCAATCACAGGAACAGGCATTAACCCAGCTAGGAGTCTTGGAGCTGCCATCATCTTTAACAGGGACTTTGCTTGGGATGACCATTGGATATTCTGGGTTGGACCATTTATTGGAGCTGCTCTTGCTGCTGTGTATCACCAGATTGTCATCCGAGCCATTCCTTTCAAGACAAGGACCTGA

Protein sequence

>Msa1306570

MEKEEDVKVGANKFSERQPLGTAAQSDSKDYKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYITILTVMGVNRSTSKCSSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFEGNARYELFKGGANFVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNRDFAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKTRT*