AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0416530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0416530 MtrunA17_Chr3g0113311 99.281 278 2 0 1 278 1 278 0.0 567
Msa0416530 MtrunA17_Chr4g0006181 70.943 265 73 1 11 275 70 330 1.43e-132 379
Msa0416530 MtrunA17_Chr6g0462031 34.545 220 96 5 60 275 49 224 9.05e-31 115
Msa0416530 MtrunA17_Chr2g0279001 32.800 250 78 7 60 271 60 257 1.23e-29 112
Msa0416530 MtrunA17_Chr8g0345631 31.206 282 107 9 20 270 21 246 4.12e-27 106
Msa0416530 MtrunA17_Chr2g0301081 29.097 299 129 9 1 270 1 245 3.64e-25 100
Msa0416530 MtrunA17_Chr3g0133901 29.435 248 106 5 42 270 46 243 1.62e-23 96.7
Msa0416530 MtrunA17_Chr3g0092091 33.610 241 78 8 52 269 48 229 2.31e-23 95.9
Msa0416530 MtrunA17_Chr6g0476641 33.486 218 91 5 67 274 91 264 5.66e-23 95.5
Msa0416530 MtrunA17_Chr2g0318521 42.177 147 70 5 139 270 92 238 2.28e-22 93.6
Msa0416530 MtrunA17_Chr6g0453151 45.752 153 62 8 139 274 162 310 4.12e-22 94.0
Msa0416530 MtrunA17_Chr6g0453141 46.309 149 59 8 139 270 95 239 5.47e-22 92.4
Msa0416530 MtrunA17_Chr4g0051941 33.992 253 93 11 45 270 35 240 8.30e-22 92.0
Msa0416530 MtrunA17_Chr6g0453181 45.638 149 60 8 139 270 95 239 1.47e-21 91.3
Msa0416530 MtrunA17_Chr6g0453161 44.872 156 65 8 136 274 94 245 3.22e-21 93.2
Msa0416530 MtrunA17_Chr6g0453161 45.098 153 63 8 139 274 362 510 8.03e-21 92.0
Msa0416530 MtrunA17_Chr5g0447531 44.371 151 63 8 137 270 93 239 3.23e-21 90.1
Msa0416530 MtrunA17_Chr5g0448411 29.811 265 115 7 33 269 31 252 2.55e-20 88.2
Msa0416530 MtrunA17_Chr5g0448421 27.946 297 143 7 1 269 1 254 1.39e-19 85.9
Msa0416530 MtrunA17_Chr1g0157481 28.517 263 103 8 44 270 95 308 2.06e-18 83.6
Msa0416530 MtrunA17_Chr6g0464511 48.810 84 32 4 194 270 107 186 1.51e-12 65.5
Msa0416530 MtrunA17_Chr6g0453171 47.368 76 30 3 201 270 1 72 9.22e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0416530 AT2G40100.1 70.522 268 78 1 11 278 10 276 4.86e-138 390
Msa0416530 AT3G08940.2 71.260 254 67 1 22 275 23 270 1.65e-128 367
Msa0416530 AT5G01530.1 76.923 221 51 0 55 275 53 273 7.35e-126 360
Msa0416530 AT2G40100.2 62.286 175 66 0 11 185 10 184 3.18e-75 228
Msa0416530 AT3G08940.1 60.479 167 60 1 22 188 23 183 4.49e-66 206
Msa0416530 AT3G54890.1 34.583 240 105 7 40 275 32 223 4.00e-34 124
Msa0416530 AT1G15820.1 34.454 238 70 7 67 271 70 254 6.72e-31 116
Msa0416530 AT3G54890.4 33.333 213 91 6 40 249 32 196 2.48e-27 105
Msa0416530 AT3G47470.1 31.879 298 106 12 1 269 1 230 8.91e-27 105
Msa0416530 AT3G61470.1 32.780 241 84 8 54 270 49 235 7.84e-26 102
Msa0416530 AT4G10340.1 35.616 219 85 7 67 274 82 255 1.57e-24 100
Msa0416530 AT1G45474.2 30.802 237 85 6 60 270 49 232 2.98e-23 95.9
Msa0416530 AT1G45474.1 30.802 237 85 6 60 270 49 232 2.98e-23 95.9
Msa0416530 AT1G29920.1 46.309 149 64 7 137 270 94 241 5.86e-23 95.5
Msa0416530 AT1G29910.1 46.309 149 64 7 137 270 94 241 5.86e-23 95.5
Msa0416530 AT1G29930.1 46.309 149 64 7 137 270 94 241 6.50e-23 95.1
Msa0416530 AT5G54270.1 42.177 147 70 4 139 270 93 239 1.08e-22 94.7
Msa0416530 AT2G34430.1 45.638 149 65 7 137 270 93 240 1.49e-22 94.4
Msa0416530 AT2G34420.1 45.638 149 65 7 137 270 92 239 1.55e-22 94.4
Msa0416530 AT3G27690.1 32.660 297 116 14 1 270 1 240 7.69e-22 92.4
Msa0416530 AT3G27690.2 32.095 296 119 13 2 270 32 272 1.13e-21 92.4
Msa0416530 AT1G19150.1 31.873 251 92 9 45 270 52 248 1.67e-21 91.7
Msa0416530 AT2G05100.1 45.638 149 60 8 139 270 95 239 2.21e-21 91.3
Msa0416530 AT2G05070.1 45.638 149 60 8 139 270 95 239 2.85e-21 90.9
Msa0416530 AT1G61520.3 30.894 246 99 7 52 269 48 250 1.83e-20 89.0
Msa0416530 AT1G61520.1 30.894 246 99 7 52 269 48 250 1.83e-20 89.0
Msa0416530 AT2G05100.2 43.537 147 62 8 139 268 95 237 1.04e-17 82.0
Msa0416530 AT1G76570.1 31.140 228 89 7 67 270 123 306 4.19e-17 80.1
Msa0416530 AT1G61520.2 30.222 225 86 7 73 269 14 195 5.17e-15 72.8

Find 109 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGATTTGTTTGGATTT+AGG 0.201972 3_2:+63430650 None:intergenic
TGACTCACTTGACCAGAATT+TGG 0.222195 3_2:-63430341 Msa0416530:CDS
TGAAGTCTTTCTTTCTCTTC+AGG 0.232786 3_2:+63428220 None:intergenic
GCAATTCAAGCTGCTGTTAC+AGG 0.247549 3_2:-63428145 Msa0416530:CDS
AACCTTGCAGGTGATATTAT+TGG 0.288594 3_2:-63430313 Msa0416530:CDS
TCTCAATTAGCACATTGATA+TGG 0.300061 3_2:-63428357 Msa0416530:CDS
AAAGCCAGCACCTAAGAAAA+AGG 0.307836 3_2:-63430515 Msa0416530:CDS
CAAGGTTCTTAGCCAAATTC+TGG 0.307978 3_2:+63430329 None:intergenic
GCTTGGTGCTCTTGGTGCTT+TGG 0.323196 3_2:-63430179 Msa0416530:CDS
TGGATCGAAGTATTAGTAAT+TGG 0.342370 3_2:-63428337 Msa0416530:CDS
GTTCTTTGATCCTCTTGGTT+TGG 0.345697 3_2:-63428251 Msa0416530:CDS
GATGGGCTAGTGTGGTTTCC+TGG 0.346659 3_2:-63430463 Msa0416530:CDS
TCTGCATGGTGTATTGGATA+TGG 0.357557 3_2:+63430780 None:intergenic
CTTAGGTGCTGGCTTTAACT+TGG 0.357661 3_2:+63430522 None:intergenic
GTTGCCATGGTGGATTTGTT+TGG 0.365784 3_2:+63430643 None:intergenic
CGTGAGTGTGAGGTTATTCA+TGG 0.369098 3_2:-63430214 Msa0416530:CDS
AATTTGGCTAAGAACCTTGC+AGG 0.371981 3_2:-63430325 Msa0416530:CDS
TTCTTTCTCTTCAGGATCAC+TGG 0.375610 3_2:+63428228 None:intergenic
GGAAAGTTCTTTGATCCTCT+TGG 0.394828 3_2:-63428256 Msa0416530:CDS
CTGGCTTTAACTTGGTGCCT+AGG 0.395823 3_2:+63430530 None:intergenic
CGACATGGTGGCGGCGGTTG+CGG 0.399441 3_2:+63430618 None:intergenic
ACCTCCGTGTACGGCTGAAA+CGG 0.403781 3_2:+63430256 None:intergenic
GTTACAGGTAAAGGACCTAT+TGG 0.405127 3_2:-63428130 Msa0416530:CDS
TTTAAGATGGAGTAATGAAA+AGG 0.405803 3_2:+63428067 None:intergenic
TTCTTATCTGCATGGTGTAT+TGG 0.405923 3_2:+63430774 None:intergenic
AGAGATTAAGCATTCTCGTT+TGG 0.409182 3_2:-63428191 Msa0416530:CDS
TGGGCTATGCTTGGTGCTCT+TGG 0.414754 3_2:-63430187 Msa0416530:CDS
AGAGAAAGAAAGACTTCAAC+TGG 0.425516 3_2:-63428215 Msa0416530:CDS
TTGGCTGTTGAAGCTTTCAC+TGG 0.429779 3_2:-63430160 Msa0416530:CDS
TTAAGATGGAGTAATGAAAA+GGG 0.441268 3_2:+63428068 None:intergenic
CATTCCGGTGGCTGAGCACC+AGG 0.445435 3_2:+63430445 None:intergenic
TGACCGTGGTTTCGATCCAT+TGG 0.446656 3_2:-63430401 Msa0416530:CDS
GTGGAAGGATCATCCTACTT+TGG 0.447717 3_2:-63428394 Msa0416530:CDS
ACGAACTCTTCCCATGTTTG+AGG 0.451082 3_2:+63430564 None:intergenic
GTGAGGTTATTCATGGAAGA+TGG 0.455594 3_2:-63430207 Msa0416530:CDS
CAAGCTGCTGTTACAGGTAA+AGG 0.458377 3_2:-63428139 Msa0416530:CDS
ATTGTCCCATCGAGCCATTC+CGG 0.459993 3_2:+63430430 None:intergenic
CTGCAAATACTCAACAGGTT+TGG 0.465448 3_2:+63430372 None:intergenic
AGCCACCGGAATGGCTCGAT+GGG 0.465925 3_2:-63430435 Msa0416530:CDS
TCAAACTGCAAATACTCAAC+AGG 0.466866 3_2:+63430367 None:intergenic
ATCAATGTGCTAATTGAGAA+TGG 0.470549 3_2:+63428361 None:intergenic
GACCGTGGTTTCGATCCATT+GGG 0.475235 3_2:-63430400 Msa0416530:CDS
GGCGGTTGCGGTGGTTGCCA+TGG 0.475490 3_2:+63430630 None:intergenic
AGTGTGTGACTGTGAGGAGA+AGG 0.478642 3_2:+63430735 None:intergenic
TATCTTGCTTCTTATCTGCA+TGG 0.485184 3_2:+63430766 None:intergenic
AAGGTGGCAATGAAACCAAT+AGG 0.493028 3_2:+63428115 None:intergenic
CTATGTTCAGGTAGAGTTGG+TGG 0.493133 3_2:-63428413 Msa0416530:intron
GGCTTCACATGTTATGTCAC+TGG 0.497566 3_2:+63428089 None:intergenic
TTGGCTACATTGAGTTTCAA+AGG 0.497966 3_2:-63428318 Msa0416530:CDS
AGAGTACAAACATACACAAA+TGG 0.505118 3_2:+63427994 None:intergenic
CTTGGTGCCTAGGTTGAAGA+AGG 0.509668 3_2:+63430540 None:intergenic
GTTCGTGCCTTCTTCAACCT+AGG 0.509983 3_2:-63430547 Msa0416530:CDS
TAACTATGTTCAGGTAGAGT+TGG 0.512557 3_2:-63428416 Msa0416530:intron
CATGGTGGCGGCGGTTGCGG+TGG 0.515542 3_2:+63430621 None:intergenic
CAGCCACCGGAATGGCTCGA+TGG 0.522740 3_2:-63430436 Msa0416530:CDS
GTGTGTGACTGTGAGGAGAA+GGG 0.522971 3_2:+63430736 None:intergenic
GTGAGAAAACAAGAAAGTGA+TGG 0.525794 3_2:-63430481 Msa0416530:CDS
CAGAGCTTGACCCAGAGAAA+AGG 0.527322 3_2:-63428291 Msa0416530:CDS
CATGGTGTATTGGATATGGT+TGG 0.528216 3_2:+63430784 None:intergenic
TAAGCATTCTCGTTTGGCCA+TGG 0.530126 3_2:-63428185 Msa0416530:CDS
GTTTCCTGGTGCTCAGCCAC+CGG 0.530681 3_2:-63430449 Msa0416530:CDS
GATTTAGGAACAAGGTGTGT+CGG 0.531693 3_2:+63430665 None:intergenic
CTGGTGCTCAGCCACCGGAA+TGG 0.535531 3_2:-63430444 Msa0416530:CDS
ACTCTTCCCATGTTTGAGGT+TGG 0.539963 3_2:+63430568 None:intergenic
ATGCAAACCAACCTCAAACA+TGG 0.540062 3_2:-63430575 Msa0416530:CDS
GGTGTCGCATGGCAAGATGC+TGG 0.547425 3_2:-63430139 Msa0416530:CDS
TGGCTCGATGGGACAATGAT+CGG 0.548987 3_2:-63430424 Msa0416530:CDS
GTGTACGGCTGAAACGGTGT+AGG 0.555155 3_2:+63430262 None:intergenic
TGGAAGAGAAAATCCAAAGT+AGG 0.556136 3_2:+63428381 None:intergenic
TGAGAAAACAAGAAAGTGAT+GGG 0.557906 3_2:-63430480 Msa0416530:CDS
TGAGGTTATTCATGGAAGAT+GGG 0.560063 3_2:-63430206 Msa0416530:CDS
AAGCTTTCACTGGTGTCGCA+TGG 0.563145 3_2:-63430150 Msa0416530:CDS
CATGGAAGATGGGCTATGCT+TGG 0.567622 3_2:-63430196 Msa0416530:CDS
TGCAAACCAACCTCAAACAT+GGG 0.573832 3_2:-63430574 Msa0416530:CDS
CATGTTATGTCACTGGTTGA+AGG 0.575668 3_2:+63428096 None:intergenic
ACAGGTTTGGCTAATCCCAA+TGG 0.582632 3_2:+63430385 None:intergenic
CGCATGGCAAGATGCTGGAA+AGG 0.585268 3_2:-63430134 Msa0416530:intron
AAGAAAGTGATGGGCTAGTG+TGG 0.588770 3_2:-63430471 Msa0416530:CDS
GCATTCTCGTTTGGCCATGG+TGG 0.594283 3_2:-63428182 Msa0416530:CDS
AAAATGCGACATGGTGGCGG+CGG 0.597180 3_2:+63430612 None:intergenic
TGATATTATTGGCACTAGAG+TGG 0.597745 3_2:-63430302 Msa0416530:CDS
TCAGAGGTTTCGTGAGTGTG+AGG 0.598879 3_2:-63430224 Msa0416530:CDS
CAGCTTGAATTGCAAAGATG+AGG 0.604000 3_2:+63428155 None:intergenic
TGCCAATAATATCACCTGCA+AGG 0.604262 3_2:+63430311 None:intergenic
GGGACAATGATCGGTGACCG+TGG 0.605769 3_2:-63430415 Msa0416530:CDS
ATGCTGCTTATAGCAACTCA+TGG 0.609996 3_2:-63427953 Msa0416530:three_prime_UTR
TTTGTTTGGATTTAGGAACA+AGG 0.616228 3_2:+63430657 None:intergenic
GGTTGCGGTGGTTGCCATGG+TGG 0.619204 3_2:+63430633 None:intergenic
GGATCAAAGAACTTTCCACC+TGG 0.626938 3_2:+63428262 None:intergenic
GGTGTGTCGGAGGGACAAAG+TGG 0.627622 3_2:+63430678 None:intergenic
TGTACGGCTGAAACGGTGTA+GGG 0.629672 3_2:+63430263 None:intergenic
TTAGGAACAAGGTGTGTCGG+AGG 0.634868 3_2:+63430668 None:intergenic
GTTCAGGTAGAGTTGGTGGA+AGG 0.634996 3_2:-63428409 Msa0416530:intron
GTCCCATCGAGCCATTCCGG+TGG 0.639550 3_2:+63430433 None:intergenic
TAGGAACAAGGTGTGTCGGA+GGG 0.644266 3_2:+63430669 None:intergenic
ATCCCAATGGATCGAAACCA+CGG 0.649765 3_2:+63430398 None:intergenic
TACACCGTTTCAGCCGTACA+CGG 0.655431 3_2:-63430260 Msa0416530:CDS
GATCAAAGAACTTTCCACCT+GGG 0.656433 3_2:+63428263 None:intergenic
TGACTGTGAGGAGAAGGGAG+TGG 0.671188 3_2:+63430741 None:intergenic
GTGTGTCGGAGGGACAAAGT+GGG 0.677501 3_2:+63430679 None:intergenic
GGATCACTGGCCAAACCAAG+AGG 0.688433 3_2:+63428241 None:intergenic
GAGAAAAGGTTATACCCAGG+TGG 0.695158 3_2:-63428277 Msa0416530:CDS
TCATAGAGTGTGTGACTGTG+AGG 0.695412 3_2:+63430729 None:intergenic
ACCGTTTCAGCCGTACACGG+AGG 0.695892 3_2:-63430257 Msa0416530:CDS
CCAGAGAAAAGGTTATACCC+AGG 0.700487 3_2:-63428280 Msa0416530:CDS
AAATCCAAACAAATCCACCA+TGG 0.708304 3_2:-63430647 Msa0416530:exon
GTTATGTCACTGGTTGAAGG+TGG 0.717219 3_2:+63428099 None:intergenic
CACTAGAGTGGAGAGTACAG+AGG 0.719429 3_2:-63430290 Msa0416530:CDS
AAAGATGAGGAAAACCACCA+TGG 0.725876 3_2:+63428168 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCGATAAAAATTTATA+TGG + chr3_2:63428944-63428963 None:intergenic 10.0%
!!! AAATTTAAAATGAATAAGTA+TGG - chr3_2:63429071-63429090 Msa0416530:intron 10.0%
!!! TATTTTTTTGTTATACAAAA+CGG + chr3_2:63429777-63429796 None:intergenic 10.0%
!!! AAATTAACTAAATTTTAAGA+TGG + chr3_2:63430632-63430651 None:intergenic 10.0%
!!! AATATTTTTCATTTTCCATA+AGG - chr3_2:63427845-63427864 Msa0416530:three_prime_UTR 15.0%
!! AATTAATCCAATATTTGAAT+CGG + chr3_2:63428828-63428847 None:intergenic 15.0%
!!! TTTTCTTTTAATCTTTAGTT+AGG - chr3_2:63429620-63429639 Msa0416530:intron 15.0%
!! ATTGAATAACAACAATGAAA+AGG + chr3_2:63428590-63428609 None:intergenic 20.0%
!!! ATGAGTTTTCAAATTCATTA+AGG - chr3_2:63428622-63428641 Msa0416530:intron 20.0%
!! GACAATGTATTATATATGTA+AGG + chr3_2:63429125-63429144 None:intergenic 20.0%
!! TCAATAATAAAGATTACAAC+AGG + chr3_2:63429186-63429205 None:intergenic 20.0%
!!! CACATTATTATTTGATTTGT+AGG - chr3_2:63429520-63429539 Msa0416530:intron 20.0%
!!! ATTTTATTTTGTGGACCTTA+TGG + chr3_2:63427863-63427882 None:intergenic 25.0%
!! TTTTTCACTTCCTTTTTCTT+AGG + chr3_2:63428181-63428200 None:intergenic 25.0%
! ACCAATTAGACTAACATATT+AGG - chr3_2:63428753-63428772 Msa0416530:intron 25.0%
!! TTTTGTCAAGTAGTATATAG+TGG - chr3_2:63429038-63429057 Msa0416530:intron 25.0%
! TGATCTTTCATTAACATCAT+TGG - chr3_2:63429270-63429289 Msa0416530:intron 25.0%
! GATCTTTCATTAACATCATT+GGG - chr3_2:63429271-63429290 Msa0416530:intron 25.0%
!! GATTTTATGTGTATTAGCTA+CGG - chr3_2:63429368-63429387 Msa0416530:intron 25.0%
!!! ATAGCTTATTTTCATGAACT+TGG - chr3_2:63429873-63429892 Msa0416530:intron 25.0%
!!! TTTTTTCAATGAAGATTGCA+AGG + chr3_2:63429970-63429989 None:intergenic 25.0%
!!! TTATCCGCTATTTTTTACAA+CGG - chr3_2:63430161-63430180 Msa0416530:CDS 25.0%
! TTAAGATGGAGTAATGAAAA+GGG + chr3_2:63430618-63430637 None:intergenic 25.0%
!! TTTAAGATGGAGTAATGAAA+AGG + chr3_2:63430619-63430638 None:intergenic 25.0%
TTTGTTTGGATTTAGGAACA+AGG + chr3_2:63428029-63428048 None:intergenic 30.0%
TGAGAAAACAAGAAAGTGAT+GGG - chr3_2:63428203-63428222 Msa0416530:CDS 30.0%
GCTCTTTCAATCTTAATGTT+CGG + chr3_2:63428654-63428673 None:intergenic 30.0%
! GCCTAATATGTTAGTCTAAT+TGG + chr3_2:63428757-63428776 None:intergenic 30.0%
!! AAGCATACCGATTCAAATAT+TGG - chr3_2:63428818-63428837 Msa0416530:intron 30.0%
AAAAGCTTAACCAGGAATAT+TGG + chr3_2:63429436-63429455 None:intergenic 30.0%
GTAATACAAAAAGCTTAACC+AGG + chr3_2:63429444-63429463 None:intergenic 30.0%
! TTAAGCTTTTTGTATTACCG+TGG - chr3_2:63429446-63429465 Msa0416530:intron 30.0%
TTGTATTACCGTGGTTTATA+TGG - chr3_2:63429455-63429474 Msa0416530:intron 30.0%
! ATTTTTGTCTTCATCGTTCT+TGG + chr3_2:63429499-63429518 None:intergenic 30.0%
TTGTTATACAAAACGGACAA+TGG + chr3_2:63429770-63429789 None:intergenic 30.0%
TGAAGATTGCAAGGATAAAA+TGG + chr3_2:63429961-63429980 None:intergenic 30.0%
! AGCTAGTTTATAGTTGATTG+CGG + chr3_2:63430096-63430115 None:intergenic 30.0%
TTATAAGTTCATCCGCTATA+AGG - chr3_2:63430127-63430146 Msa0416530:intron 30.0%
ACTGATAAACTACCTTATAG+CGG + chr3_2:63430142-63430161 None:intergenic 30.0%
AACGGAACCAAAATTAAAGA+CGG - chr3_2:63430179-63430198 Msa0416530:CDS 30.0%
ACTACTATCTAACTATGTTC+AGG - chr3_2:63430258-63430277 Msa0416530:CDS 30.0%
ATCAATGTGCTAATTGAGAA+TGG + chr3_2:63430325-63430344 None:intergenic 30.0%
TCTCAATTAGCACATTGATA+TGG - chr3_2:63430326-63430345 Msa0416530:CDS 30.0%
! TGGATCGAAGTATTAGTAAT+TGG - chr3_2:63430346-63430365 Msa0416530:CDS 30.0%
AGAGTACAAACATACACAAA+TGG + chr3_2:63430692-63430711 None:intergenic 30.0%
!!! CTGCGTCACATTTTATTTTG+TGG + chr3_2:63427872-63427891 None:intergenic 35.0%
TTCTTATCTGCATGGTGTAT+TGG + chr3_2:63427912-63427931 None:intergenic 35.0%
TATCTTGCTTCTTATCTGCA+TGG + chr3_2:63427920-63427939 None:intergenic 35.0%
!! TGGTGGATTTGTTTGGATTT+AGG + chr3_2:63428036-63428055 None:intergenic 35.0%
AAATCCAAACAAATCCACCA+TGG - chr3_2:63428036-63428055 Msa0416530:three_prime_UTR 35.0%
GTGAGAAAACAAGAAAGTGA+TGG - chr3_2:63428202-63428221 Msa0416530:CDS 35.0%
TCAAACTGCAAATACTCAAC+AGG + chr3_2:63428319-63428338 None:intergenic 35.0%
AACCTTGCAGGTGATATTAT+TGG - chr3_2:63428370-63428389 Msa0416530:CDS 35.0%
TGATATTATTGGCACTAGAG+TGG - chr3_2:63428381-63428400 Msa0416530:CDS 35.0%
TGAGGTTATTCATGGAAGAT+GGG - chr3_2:63428477-63428496 Msa0416530:intron 35.0%
AGCATTTACAAACACCAACA+AGG - chr3_2:63428671-63428690 Msa0416530:intron 35.0%
! CAACAAGGTTCTAATGTTAC+CGG - chr3_2:63428686-63428705 Msa0416530:intron 35.0%
GAGTTGAACACATGTTATTG+CGG - chr3_2:63428712-63428731 Msa0416530:intron 35.0%
TAGAGTGTGTGGAAATTAGA+AGG - chr3_2:63429303-63429322 Msa0416530:intron 35.0%
AGAGTGTGTGGAAATTAGAA+GGG - chr3_2:63429304-63429323 Msa0416530:intron 35.0%
TAGCTACGGACAATGTAATA+TGG - chr3_2:63429382-63429401 Msa0416530:intron 35.0%
AGAATCACATACATGACCTA+GGG + chr3_2:63429409-63429428 None:intergenic 35.0%
ATCTTCAGCCATATAAACCA+CGG + chr3_2:63429466-63429485 None:intergenic 35.0%
!!! CTTTTTCTGTGTAGCTTGTT+GGG + chr3_2:63429579-63429598 None:intergenic 35.0%
!! ACTTTTTCTGTGTAGCTTGT+TGG + chr3_2:63429580-63429599 None:intergenic 35.0%
GGTTCCGTTGTAAAAAATAG+CGG + chr3_2:63430168-63430187 None:intergenic 35.0%
ACGGAACCAAAATTAAAGAC+GGG - chr3_2:63430180-63430199 Msa0416530:CDS 35.0%
!! TCTTTGCCCGTCTTTAATTT+TGG + chr3_2:63430189-63430208 None:intergenic 35.0%
TAACTATGTTCAGGTAGAGT+TGG - chr3_2:63430267-63430286 Msa0416530:CDS 35.0%
TGGAAGAGAAAATCCAAAGT+AGG + chr3_2:63430305-63430324 None:intergenic 35.0%
TTGGCTACATTGAGTTTCAA+AGG - chr3_2:63430365-63430384 Msa0416530:CDS 35.0%
TGAAGTCTTTCTTTCTCTTC+AGG + chr3_2:63430466-63430485 None:intergenic 35.0%
AGAGAAAGAAAGACTTCAAC+TGG - chr3_2:63430468-63430487 Msa0416530:CDS 35.0%
AGAGATTAAGCATTCTCGTT+TGG - chr3_2:63430492-63430511 Msa0416530:CDS 35.0%
CATGGTGTATTGGATATGGT+TGG + chr3_2:63427902-63427921 None:intergenic 40.0%
TCTGCATGGTGTATTGGATA+TGG + chr3_2:63427906-63427925 None:intergenic 40.0%
GATTTAGGAACAAGGTGTGT+CGG + chr3_2:63428021-63428040 None:intergenic 40.0%
ATGCAAACCAACCTCAAACA+TGG - chr3_2:63428108-63428127 Msa0416530:CDS 40.0%
TGCAAACCAACCTCAAACAT+GGG - chr3_2:63428109-63428128 Msa0416530:CDS 40.0%
AAAGCCAGCACCTAAGAAAA+AGG - chr3_2:63428168-63428187 Msa0416530:CDS 40.0%
! ACTTCCTTTTTCTTAGGTGC+TGG + chr3_2:63428175-63428194 None:intergenic 40.0%
CTGCAAATACTCAACAGGTT+TGG + chr3_2:63428314-63428333 None:intergenic 40.0%
TGACTCACTTGACCAGAATT+TGG - chr3_2:63428342-63428361 Msa0416530:CDS 40.0%
CAAGGTTCTTAGCCAAATTC+TGG + chr3_2:63428357-63428376 None:intergenic 40.0%
AATTTGGCTAAGAACCTTGC+AGG - chr3_2:63428358-63428377 Msa0416530:CDS 40.0%
TGCCAATAATATCACCTGCA+AGG + chr3_2:63428375-63428394 None:intergenic 40.0%
ATTCCAAAAACCTCCGTGTA+CGG + chr3_2:63428439-63428458 None:intergenic 40.0%
GTGAGGTTATTCATGGAAGA+TGG - chr3_2:63428476-63428495 Msa0416530:intron 40.0%
CGGTAACATTAGAACCTTGT+TGG + chr3_2:63428688-63428707 None:intergenic 40.0%
ACTGAGTTCAAACTCGAACT+CGG + chr3_2:63429102-63429121 None:intergenic 40.0%
GAGTGTGTGGAAATTAGAAG+GGG - chr3_2:63429305-63429324 Msa0416530:intron 40.0%
GAAACTATGTGACAAGACAG+AGG - chr3_2:63429327-63429346 Msa0416530:intron 40.0%
GACAATGTAATATGGTCCCT+AGG - chr3_2:63429390-63429409 Msa0416530:intron 40.0%
CAGAATCACATACATGACCT+AGG + chr3_2:63429410-63429429 None:intergenic 40.0%
! CTGGGTATAACCTTTTCTCT+GGG + chr3_2:63430405-63430424 None:intergenic 40.0%
GATCAAAGAACTTTCCACCT+GGG + chr3_2:63430423-63430442 None:intergenic 40.0%
GGAAAGTTCTTTGATCCTCT+TGG - chr3_2:63430427-63430446 Msa0416530:CDS 40.0%
GTTCTTTGATCCTCTTGGTT+TGG - chr3_2:63430432-63430451 Msa0416530:CDS 40.0%
TTCTTTCTCTTCAGGATCAC+TGG + chr3_2:63430458-63430477 None:intergenic 40.0%
AAAGATGAGGAAAACCACCA+TGG + chr3_2:63430518-63430537 None:intergenic 40.0%
CAGCTTGAATTGCAAAGATG+AGG + chr3_2:63430531-63430550 None:intergenic 40.0%
GTTACAGGTAAAGGACCTAT+TGG - chr3_2:63430553-63430572 Msa0416530:CDS 40.0%
AAGGTGGCAATGAAACCAAT+AGG + chr3_2:63430571-63430590 None:intergenic 40.0%
! CATGTTATGTCACTGGTTGA+AGG + chr3_2:63430590-63430609 None:intergenic 40.0%
! ATGCTGCTTATAGCAACTCA+TGG - chr3_2:63430730-63430749 Msa0416530:five_prime_UTR 40.0%
TCATAGAGTGTGTGACTGTG+AGG + chr3_2:63427957-63427976 None:intergenic 45.0%
!! GTTGCCATGGTGGATTTGTT+TGG + chr3_2:63428043-63428062 None:intergenic 45.0%
GAAAAAATGCGACATGGTGG+CGG + chr3_2:63428077-63428096 None:intergenic 45.0%
!!! GCCACCATGTCGCATTTTTT+CGG - chr3_2:63428076-63428095 Msa0416530:three_prime_UTR 45.0%
! AGTGCCGAAAAAATGCGACA+TGG + chr3_2:63428083-63428102 None:intergenic 45.0%
! ACTCTTCCCATGTTTGAGGT+TGG + chr3_2:63428118-63428137 None:intergenic 45.0%
ACGAACTCTTCCCATGTTTG+AGG + chr3_2:63428122-63428141 None:intergenic 45.0%
!! CTTAGGTGCTGGCTTTAACT+TGG + chr3_2:63428164-63428183 None:intergenic 45.0%
!! AAGAAAGTGATGGGCTAGTG+TGG - chr3_2:63428212-63428231 Msa0416530:CDS 45.0%
ATCCCAATGGATCGAAACCA+CGG + chr3_2:63428288-63428307 None:intergenic 45.0%
ACAGGTTTGGCTAATCCCAA+TGG + chr3_2:63428301-63428320 None:intergenic 45.0%
!!! CGGAGGTTTTTGGAATTCAG+AGG - chr3_2:63428443-63428462 Msa0416530:intron 45.0%
CGTGAGTGTGAGGTTATTCA+TGG - chr3_2:63428469-63428488 Msa0416530:intron 45.0%
TTGGCTGTTGAAGCTTTCAC+TGG - chr3_2:63428523-63428542 Msa0416530:intron 45.0%
! CAAGGTTCTAATGTTACCGG+CGG - chr3_2:63428689-63428708 Msa0416530:intron 45.0%
! AAGGTTCTAATGTTACCGGC+GGG - chr3_2:63428690-63428709 Msa0416530:intron 45.0%
TGATGTCTATGTTCCCGTGA+TGG - chr3_2:63429203-63429222 Msa0416530:intron 45.0%
GGATCAGATACTAGAGTGTG+TGG - chr3_2:63429292-63429311 Msa0416530:intron 45.0%
GATTCTGTCGCCAATATTCC+TGG - chr3_2:63429423-63429442 Msa0416530:intron 45.0%
!! TCTGTGTAGCTTGTTGGGAA+GGG + chr3_2:63429574-63429593 None:intergenic 45.0%
!! TTCTGTGTAGCTTGTTGGGA+AGG + chr3_2:63429575-63429594 None:intergenic 45.0%
CTATGTTCAGGTAGAGTTGG+TGG - chr3_2:63430270-63430289 Msa0416530:CDS 45.0%
GTGGAAGGATCATCCTACTT+TGG - chr3_2:63430289-63430308 Msa0416530:CDS 45.0%
! CCTGGGTATAACCTTTTCTC+TGG + chr3_2:63430406-63430425 None:intergenic 45.0%
CCAGAGAAAAGGTTATACCC+AGG - chr3_2:63430403-63430422 Msa0416530:CDS 45.0%
GAGAAAAGGTTATACCCAGG+TGG - chr3_2:63430406-63430425 Msa0416530:CDS 45.0%
GGATCAAAGAACTTTCCACC+TGG + chr3_2:63430424-63430443 None:intergenic 45.0%
TAAGCATTCTCGTTTGGCCA+TGG - chr3_2:63430498-63430517 Msa0416530:CDS 45.0%
GCAATTCAAGCTGCTGTTAC+AGG - chr3_2:63430538-63430557 Msa0416530:CDS 45.0%
CAAGCTGCTGTTACAGGTAA+AGG - chr3_2:63430544-63430563 Msa0416530:CDS 45.0%
! GTTATGTCACTGGTTGAAGG+TGG + chr3_2:63430587-63430606 None:intergenic 45.0%
GGCTTCACATGTTATGTCAC+TGG + chr3_2:63430597-63430616 None:intergenic 45.0%
GTGTGTGACTGTGAGGAGAA+GGG + chr3_2:63427950-63427969 None:intergenic 50.0%
AGTGTGTGACTGTGAGGAGA+AGG + chr3_2:63427951-63427970 None:intergenic 50.0%
TAGGAACAAGGTGTGTCGGA+GGG + chr3_2:63428017-63428036 None:intergenic 50.0%
TTAGGAACAAGGTGTGTCGG+AGG + chr3_2:63428018-63428037 None:intergenic 50.0%
GCCGAAAAAATGCGACATGG+TGG + chr3_2:63428080-63428099 None:intergenic 50.0%
GTTCGTGCCTTCTTCAACCT+AGG - chr3_2:63428136-63428155 Msa0416530:CDS 50.0%
!! CTTGGTGCCTAGGTTGAAGA+AGG + chr3_2:63428146-63428165 None:intergenic 50.0%
!! CTGGCTTTAACTTGGTGCCT+AGG + chr3_2:63428156-63428175 None:intergenic 50.0%
ATTGTCCCATCGAGCCATTC+CGG + chr3_2:63428256-63428275 None:intergenic 50.0%
TGGCTCGATGGGACAATGAT+CGG - chr3_2:63428259-63428278 Msa0416530:CDS 50.0%
TGACCGTGGTTTCGATCCAT+TGG - chr3_2:63428282-63428301 Msa0416530:CDS 50.0%
GACCGTGGTTTCGATCCATT+GGG - chr3_2:63428283-63428302 Msa0416530:CDS 50.0%
! CACTAGAGTGGAGAGTACAG+AGG - chr3_2:63428393-63428412 Msa0416530:CDS 50.0%
TGTACGGCTGAAACGGTGTA+GGG + chr3_2:63428423-63428442 None:intergenic 50.0%
TACACCGTTTCAGCCGTACA+CGG - chr3_2:63428423-63428442 Msa0416530:intron 50.0%
TCAGAGGTTTCGTGAGTGTG+AGG - chr3_2:63428459-63428478 Msa0416530:intron 50.0%
!! CATGGAAGATGGGCTATGCT+TGG - chr3_2:63428487-63428506 Msa0416530:intron 50.0%
!! AAGCTTTCACTGGTGTCGCA+TGG - chr3_2:63428533-63428552 Msa0416530:intron 50.0%
AACATGTGTTCAACTCCCGC+CGG + chr3_2:63428708-63428727 None:intergenic 50.0%
AAACCGACACAGCACCATCA+CGG + chr3_2:63429220-63429239 None:intergenic 50.0%
!! GTTCAGGTAGAGTTGGTGGA+AGG - chr3_2:63430274-63430293 Msa0416530:CDS 50.0%
CAGAGCTTGACCCAGAGAAA+AGG - chr3_2:63430392-63430411 Msa0416530:CDS 50.0%
TGACTGTGAGGAGAAGGGAG+TGG + chr3_2:63427945-63427964 None:intergenic 55.0%
GTGTGTCGGAGGGACAAAGT+GGG + chr3_2:63428007-63428026 None:intergenic 55.0%
!! AAAATGCGACATGGTGGCGG+CGG + chr3_2:63428074-63428093 None:intergenic 55.0%
!! GATGGGCTAGTGTGGTTTCC+TGG - chr3_2:63428220-63428239 Msa0416530:CDS 55.0%
GTGTACGGCTGAAACGGTGT+AGG + chr3_2:63428424-63428443 None:intergenic 55.0%
ACCTCCGTGTACGGCTGAAA+CGG + chr3_2:63428430-63428449 None:intergenic 55.0%
! CAGCCGTACACGGAGGTTTT+TGG - chr3_2:63428433-63428452 Msa0416530:intron 55.0%
!! TGGGCTATGCTTGGTGCTCT+TGG - chr3_2:63428496-63428515 Msa0416530:intron 55.0%
!! GCTTGGTGCTCTTGGTGCTT+TGG - chr3_2:63428504-63428523 Msa0416530:intron 55.0%
CGCATGGCAAGATGCTGGAA+AGG - chr3_2:63428549-63428568 Msa0416530:intron 55.0%
!! TTCCCGTGATGGTGCTGTGT+CGG - chr3_2:63429214-63429233 Msa0416530:intron 55.0%
AACCGACACAGCACCATCAC+GGG + chr3_2:63429219-63429238 None:intergenic 55.0%
!! TGGTGCTGTGTCGGTTTCGT+AGG - chr3_2:63429223-63429242 Msa0416530:intron 55.0%
!! GGTGCTGTGTCGGTTTCGTA+GGG - chr3_2:63429224-63429243 Msa0416530:intron 55.0%
GGATCACTGGCCAAACCAAG+AGG + chr3_2:63430445-63430464 None:intergenic 55.0%
GCATTCTCGTTTGGCCATGG+TGG - chr3_2:63430501-63430520 Msa0416530:CDS 55.0%
GGTGTGTCGGAGGGACAAAG+TGG + chr3_2:63428008-63428027 None:intergenic 60.0%
GTTTCCTGGTGCTCAGCCAC+CGG - chr3_2:63428234-63428253 Msa0416530:CDS 60.0%
AGCCACCGGAATGGCTCGAT+GGG - chr3_2:63428248-63428267 Msa0416530:CDS 60.0%
GGGACAATGATCGGTGACCG+TGG - chr3_2:63428268-63428287 Msa0416530:CDS 60.0%
ACCGTTTCAGCCGTACACGG+AGG - chr3_2:63428426-63428445 Msa0416530:intron 60.0%
! GGTGTCGCATGGCAAGATGC+TGG - chr3_2:63428544-63428563 Msa0416530:intron 60.0%
GGTTGCGGTGGTTGCCATGG+TGG + chr3_2:63428053-63428072 None:intergenic 65.0%
CATTCCGGTGGCTGAGCACC+AGG + chr3_2:63428241-63428260 None:intergenic 65.0%
CTGGTGCTCAGCCACCGGAA+TGG - chr3_2:63428239-63428258 Msa0416530:CDS 65.0%
CAGCCACCGGAATGGCTCGA+TGG - chr3_2:63428247-63428266 Msa0416530:CDS 65.0%
GTCCCATCGAGCCATTCCGG+TGG + chr3_2:63428253-63428272 None:intergenic 65.0%
GGCGGTTGCGGTGGTTGCCA+TGG + chr3_2:63428056-63428075 None:intergenic 70.0%
!! CGACATGGTGGCGGCGGTTG+CGG + chr3_2:63428068-63428087 None:intergenic 70.0%
!! CATGGTGGCGGCGGTTGCGG+TGG + chr3_2:63428065-63428084 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 63427839 63430866 63427839 ID=Msa0416530;Name=Msa0416530
chr3_2 mRNA 63427839 63430866 63427839 ID=Msa0416530-mRNA-1;Parent=Msa0416530;Name=Msa0416530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=216|1|1|1|1|1|2|266|278
chr3_2 exon 63427839 63428425 63427839 ID=Msa0416530-mRNA-1:exon:13802;Parent=Msa0416530-mRNA-1
chr3_2 exon 63430135 63430866 63430135 ID=Msa0416530-mRNA-1:exon:13801;Parent=Msa0416530-mRNA-1
chr3_2 five_prime_UTR 63430651 63430866 63430651 ID=Msa0416530-mRNA-1:five_prime_utr;Parent=Msa0416530-mRNA-1
chr3_2 CDS 63430135 63430650 63430135 ID=Msa0416530-mRNA-1:cds;Parent=Msa0416530-mRNA-1
chr3_2 CDS 63428105 63428425 63428105 ID=Msa0416530-mRNA-1:cds;Parent=Msa0416530-mRNA-1
chr3_2 three_prime_UTR 63427839 63428104 63427839 ID=Msa0416530-mRNA-1:three_prime_utr;Parent=Msa0416530-mRNA-1
Gene Sequence

>Msa0416530

ATGGCAACCACCGCAACCGCCGCCACCATGTCGCATTTTTTCGGCACTAGTCTATGCAAACCAACCTCAAACATGGGAAGAGTTCGTGCCTTCTTCAACCTAGGCACCAAGTTAAAGCCAGCACCTAAGAAAAAGGAAGTGAAAAAAGTGAGAAAACAAGAAAGTGATGGGCTAGTGTGGTTTCCTGGTGCTCAGCCACCGGAATGGCTCGATGGGACAATGATCGGTGACCGTGGTTTCGATCCATTGGGATTAGCCAAACCTGTTGAGTATTTGCAGTTTGATCTTGACTCACTTGACCAGAATTTGGCTAAGAACCTTGCAGGTGATATTATTGGCACTAGAGTGGAGAGTACAGAGGTTAACCCTACACCGTTTCAGCCGTACACGGAGGTTTTTGGAATTCAGAGGTTTCGTGAGTGTGAGGTTATTCATGGAAGATGGGCTATGCTTGGTGCTCTTGGTGCTTTGGCTGTTGAAGCTTTCACTGGTGTCGCATGGCAAGATGCTGGAAAGGTAGAGTTGGTGGAAGGATCATCCTACTTTGGATTTTCTCTTCCATTCTCAATTAGCACATTGATATGGATCGAAGTATTAGTAATTGGCTACATTGAGTTTCAAAGGAATGCAGAGCTTGACCCAGAGAAAAGGTTATACCCAGGTGGAAAGTTCTTTGATCCTCTTGGTTTGGCCAGTGATCCTGAAGAGAAAGAAAGACTTCAACTGGCAGAGATTAAGCATTCTCGTTTGGCCATGGTGGTTTTCCTCATCTTTGCAATTCAAGCTGCTGTTACAGGTAAAGGACCTATTGGTTTCATTGCCACCTTCAACCAGTGA

Protein sequence

>Msa0416530

MATTATAATMSHFFGTSLCKPTSNMGRVRAFFNLGTKLKPAPKKKEVKKVRKQESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGLAKPVEYLQFDLDSLDQNLAKNLAGDIIGTRVESTEVNPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGSSYFGFSLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLASDPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPIGFIATFNQ*