AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1439400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439400 MtrunA17_Chr6g0456351 82.616 627 37 8 1 573 1 609 0.0 975
Msa1439400 MtrunA17_Chr7g0217421 51.601 281 120 6 266 536 21 295 2.32e-78 253
Msa1439400 MtrunA17_Chr5g0429571 36.637 565 285 16 13 530 28 566 3.71e-76 257
Msa1439400 MtrunA17_Chr3g0143721 51.838 272 115 6 285 547 249 513 1.61e-74 251
Msa1439400 MtrunA17_Chr7g0260601 45.161 310 145 5 252 539 196 502 4.52e-74 249
Msa1439400 MtrunA17_Chr4g0052411 44.444 342 157 9 226 541 155 489 5.29e-73 246
Msa1439400 MtrunA17_Chr3g0104211 54.406 261 101 6 283 530 302 557 3.36e-72 246
Msa1439400 MtrunA17_Chr2g0297281 47.811 297 138 7 277 563 279 568 7.26e-72 244
Msa1439400 MtrunA17_Chr6g0476861 47.794 272 128 4 276 536 188 456 9.80e-69 234
Msa1439400 MtrunA17_Chr7g0248361 49.434 265 116 5 285 536 192 451 2.08e-67 230
Msa1439400 MtrunA17_Chr4g0031821 46.595 279 135 4 269 536 304 579 1.42e-66 231
Msa1439400 MtrunA17_Chr3g0135721 48.736 277 126 6 279 547 217 485 1.58e-66 229
Msa1439400 MtrunA17_Chr3g0094871 45.038 262 131 4 283 534 9 267 8.52e-66 221
Msa1439400 MtrunA17_Chr8g0362771 46.918 292 132 8 261 540 212 492 2.55e-65 226
Msa1439400 MtrunA17_Chr3g0135761 48.507 268 123 5 287 547 224 483 1.46e-63 221
Msa1439400 MtrunA17_Chr1g0158881 46.520 273 133 5 276 541 320 586 1.50e-61 217
Msa1439400 MtrunA17_Chr2g0331161 46.565 262 125 5 285 536 415 671 2.29e-60 215
Msa1439400 MtrunA17_Chr3g0129971 46.494 271 128 6 285 541 296 563 3.36e-59 211
Msa1439400 MtrunA17_Chr5g0432631 48.148 270 124 7 279 540 222 483 1.41e-58 209
Msa1439400 MtrunA17_Chr5g0432641 47.126 261 126 5 287 540 193 448 1.63e-56 201
Msa1439400 MtrunA17_Chr8g0388371 40.214 281 148 5 263 526 381 658 1.51e-53 196
Msa1439400 MtrunA17_Chr3g0135781 49.733 187 86 3 261 442 30 213 4.88e-48 166
Msa1439400 MtrunA17_Chr1g0192151 43.145 248 125 7 284 520 166 408 1.46e-47 171
Msa1439400 MtrunA17_Chr4g0014731 43.145 248 125 7 284 520 167 409 1.74e-47 171
Msa1439400 MtrunA17_Chr3g0145011 40.562 249 134 6 284 522 138 382 1.35e-44 163
Msa1439400 MtrunA17_Chr3g0141901 42.922 219 112 5 313 522 165 379 2.34e-44 162
Msa1439400 MtrunA17_Chr1g0168321 40.613 261 108 5 285 536 164 386 2.60e-44 164
Msa1439400 MtrunA17_Chr8g0345461 37.698 252 143 6 285 526 165 412 6.45e-42 156
Msa1439400 MtrunA17_Chr4g0050561 35.849 265 153 5 287 539 158 417 8.32e-42 155
Msa1439400 MtrunA17_Chr7g0262801 39.024 246 142 4 287 525 189 433 1.28e-41 155
Msa1439400 MtrunA17_Chr1g0200081 34.416 308 178 9 230 526 127 421 3.59e-41 154
Msa1439400 MtrunA17_Chr2g0327121 40.167 239 130 5 285 515 207 440 4.18e-41 159
Msa1439400 MtrunA17_Chr2g0327121 36.264 273 148 8 265 524 458 717 6.43e-39 152
Msa1439400 MtrunA17_Chr1g0182711 38.618 246 143 4 287 525 190 434 4.90e-41 154
Msa1439400 MtrunA17_Chr7g0264521 38.645 251 140 6 274 515 194 439 5.46e-41 158
Msa1439400 MtrunA17_Chr7g0264521 34.602 289 163 8 269 544 461 736 2.18e-39 154
Msa1439400 MtrunA17_Chr1g0180791 39.749 239 131 5 285 515 205 438 7.05e-41 158
Msa1439400 MtrunA17_Chr1g0180791 37.546 269 142 8 269 524 460 715 2.10e-40 157
Msa1439400 MtrunA17_Chr8g0357301 29.851 402 237 13 141 522 340 716 4.64e-39 153
Msa1439400 MtrunA17_Chr7g0255721 39.301 229 124 6 285 503 685 908 4.42e-38 150
Msa1439400 MtrunA17_Chr7g0255721 35.371 229 128 6 292 509 393 612 3.54e-23 104
Msa1439400 MtrunA17_Chr7g0255651 39.130 253 144 4 263 507 260 510 1.44e-37 146
Msa1439400 MtrunA17_Chr7g0255651 35.047 214 112 9 319 516 48 250 1.76e-16 82.8
Msa1439400 MtrunA17_Chr2g0277831 42.672 232 115 7 287 506 245 470 2.73e-37 147
Msa1439400 MtrunA17_Chr2g0277831 39.474 228 127 5 284 503 532 756 1.43e-34 139
Msa1439400 MtrunA17_Chr3g0108321 40.909 198 109 3 275 467 152 346 8.71e-37 140
Msa1439400 MtrunA17_Chr7g0255691 40.175 229 127 4 285 505 286 512 3.11e-34 136
Msa1439400 MtrunA17_Chr7g0255691 37.864 206 109 7 314 506 47 246 3.83e-22 100
Msa1439400 MtrunA17_Chr7g0255641 35.317 252 146 7 285 524 658 904 9.57e-34 137
Msa1439400 MtrunA17_Chr7g0255641 33.040 227 127 8 323 533 432 649 5.57e-21 97.4
Msa1439400 MtrunA17_Chr7g0255901 36.929 241 131 9 280 506 634 867 9.45e-32 130
Msa1439400 MtrunA17_Chr1g0190401 39.130 184 107 1 285 463 677 860 8.10e-31 128
Msa1439400 MtrunA17_Chr2g0316851 37.712 236 126 8 286 506 595 824 1.11e-30 128
Msa1439400 MtrunA17_Chr5g0432391 42.690 171 90 3 355 522 78 243 2.44e-29 120
Msa1439400 MtrunA17_Chr2g0327231 40.000 185 95 6 265 439 327 505 3.60e-29 121
Msa1439400 MtrunA17_Chr6g0459561 33.449 287 163 12 278 547 378 653 4.55e-29 122
Msa1439400 MtrunA17_Chr3g0127431 36.017 236 135 7 280 505 79 308 1.72e-28 117
Msa1439400 MtrunA17_Chr3g0086411 32.959 267 152 5 285 527 215 478 1.72e-28 119
Msa1439400 MtrunA17_Chr3g0086411 42.953 149 72 3 368 506 7 152 6.22e-21 96.3
Msa1439400 MtrunA17_Chr3g0086401 34.364 291 147 8 255 506 38 323 1.74e-28 120
Msa1439400 MtrunA17_Chr3g0086401 34.553 246 131 6 285 504 385 626 2.28e-27 117
Msa1439400 MtrunA17_Chr4g0043381 33.333 249 140 7 286 524 838 1070 2.20e-28 120
Msa1439400 MtrunA17_Chr4g0026631 34.568 243 143 8 277 511 122 356 3.74e-28 117
Msa1439400 MtrunA17_Chr2g0321241 38.308 201 110 7 277 471 127 319 1.29e-27 115
Msa1439400 MtrunA17_Chr4g0033451 36.032 247 139 7 283 515 378 619 2.11e-27 117
Msa1439400 MtrunA17_Chr3g0127401 35.593 236 136 7 280 505 76 305 6.96e-27 112
Msa1439400 MtrunA17_Chr1g0202371 36.975 238 117 10 281 500 393 615 1.28e-26 114
Msa1439400 MtrunA17_Chr8g0387641 35.745 235 135 7 281 505 517 745 2.20e-26 114
Msa1439400 MtrunA17_Chr6g0462581 36.170 235 133 7 281 505 496 723 4.38e-26 113
Msa1439400 MtrunA17_Chr4g0004121 35.458 251 139 8 282 516 239 482 1.96e-25 110
Msa1439400 MtrunA17_Chr5g0397121 34.855 241 129 8 281 505 509 737 2.03e-25 111
Msa1439400 MtrunA17_Chr3g0116131 36.207 232 131 8 280 500 897 1122 4.40e-25 110
Msa1439400 MtrunA17_Chr1g0202381 35.865 237 122 9 281 500 464 687 6.26e-25 109
Msa1439400 MtrunA17_Chr1g0204031 35.169 236 135 8 281 505 553 781 2.25e-24 108
Msa1439400 MtrunA17_Chr1g0195731 34.146 246 145 8 280 514 929 1168 4.64e-24 107
Msa1439400 MtrunA17_Chr1g0195741 34.454 238 139 7 280 506 933 1164 4.69e-24 107
Msa1439400 MtrunA17_Chr4g0047411 36.404 228 117 9 315 521 207 427 5.66e-24 106
Msa1439400 MtrunA17_Chr2g0289231 39.884 173 91 5 314 478 335 502 1.18e-23 105
Msa1439400 MtrunA17_Chr4g0052271 33.333 258 150 11 282 526 116 364 1.86e-23 102
Msa1439400 MtrunA17_Chr4g0038101 32.510 243 150 6 280 514 716 952 6.10e-23 103
Msa1439400 MtrunA17_Chr7g0246111 33.476 233 140 7 282 505 209 435 3.02e-22 100
Msa1439400 MtrunA17_Chr6g0459541 29.167 312 168 13 278 547 38 338 8.98e-22 97.1
Msa1439400 MtrunA17_Chr6g0459551 33.333 216 125 8 285 492 102 306 9.70e-19 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439400 AT3G02450.1 66.234 462 130 8 132 572 166 622 0.0 586
Msa1439400 AT5G58870.1 42.518 421 200 13 141 533 176 582 2.41e-76 258
Msa1439400 AT3G47060.1 41.106 416 208 12 141 533 177 578 1.28e-74 253
Msa1439400 AT1G50250.1 52.632 266 113 5 285 541 259 520 2.26e-73 248
Msa1439400 AT5G15250.1 51.866 268 113 6 279 536 216 477 2.50e-73 248
Msa1439400 AT1G06430.1 50.000 284 125 7 268 541 201 477 8.15e-73 246
Msa1439400 AT1G06430.3 50.000 284 125 7 268 541 201 477 8.15e-73 246
Msa1439400 AT1G06430.2 50.000 284 125 7 268 541 201 477 8.15e-73 246
Msa1439400 AT2G30950.1 51.282 273 116 7 279 541 219 484 9.54e-73 246
Msa1439400 AT2G30950.2 51.282 273 116 7 279 541 219 484 9.54e-73 246
Msa1439400 AT2G30950.3 51.282 273 116 7 279 541 219 484 9.54e-73 246
Msa1439400 AT2G30950.4 51.282 273 116 7 279 541 223 488 1.20e-72 246
Msa1439400 AT5G42270.1 51.880 266 115 5 285 541 247 508 3.29e-72 245
Msa1439400 AT5G15250.2 47.766 291 113 7 279 536 216 500 2.45e-70 235
Msa1439400 AT1G07510.1 46.454 282 137 4 269 539 308 586 2.51e-69 239
Msa1439400 AT2G26140.1 51.119 268 116 5 287 547 226 485 1.14e-67 233
Msa1439400 AT2G29080.1 45.907 281 139 4 269 539 303 580 8.18e-66 229
Msa1439400 AT5G53170.1 47.985 273 129 5 276 541 350 616 2.40e-65 228
Msa1439400 AT3G16290.1 46.923 260 123 5 285 534 407 661 1.72e-60 216
Msa1439400 AT5G64580.1 40.634 347 163 11 233 541 239 580 1.28e-59 213
Msa1439400 AT4G23940.1 40.136 294 155 5 263 542 404 690 2.79e-54 198
Msa1439400 AT3G05530.1 43.145 248 125 7 284 520 167 409 1.61e-47 172
Msa1439400 AT1G09100.1 42.742 248 126 7 284 520 166 408 2.21e-46 169
Msa1439400 AT5G43010.1 42.500 240 123 6 313 543 165 398 2.82e-45 165
Msa1439400 AT1G45000.1 42.083 240 124 6 313 543 165 398 7.62e-45 164
Msa1439400 AT4G29040.1 39.431 246 141 4 287 525 187 431 5.75e-42 157
Msa1439400 AT3G56690.1 41.850 227 121 5 285 503 721 944 6.71e-42 162
Msa1439400 AT3G56690.1 37.374 198 113 5 316 506 413 606 2.91e-27 117
Msa1439400 AT1G53750.1 37.698 252 143 6 285 526 165 412 1.07e-41 155
Msa1439400 AT2G20140.1 40.081 247 138 6 287 525 187 431 1.81e-41 155
Msa1439400 AT5G19990.2 35.472 265 154 5 287 539 102 361 6.24e-41 152
Msa1439400 AT3G09840.1 39.331 239 132 5 285 515 204 437 1.95e-40 157
Msa1439400 AT3G09840.1 36.546 249 139 6 285 524 477 715 1.01e-34 140
Msa1439400 AT5G19990.1 35.472 265 154 5 287 539 160 419 2.00e-40 152
Msa1439400 AT5G19990.3 35.472 265 154 5 287 539 160 419 2.00e-40 152
Msa1439400 AT5G20000.1 35.472 265 154 5 287 539 160 419 2.12e-40 152
Msa1439400 AT5G03340.1 39.331 239 132 5 285 515 204 437 2.52e-40 157
Msa1439400 AT5G03340.1 37.959 245 134 6 285 521 477 711 4.72e-38 150
Msa1439400 AT3G53230.1 38.494 239 134 5 285 515 205 438 7.61e-40 155
Msa1439400 AT3G53230.1 38.306 248 135 6 285 524 478 715 1.06e-39 155
Msa1439400 AT5G58290.1 36.032 247 149 4 275 515 145 388 5.70e-38 145
Msa1439400 AT1G53780.1 32.468 308 185 9 230 526 289 584 1.08e-36 144
Msa1439400 AT1G53780.4 32.468 308 185 9 230 526 289 584 1.08e-36 144
Msa1439400 AT1G53780.3 32.468 308 185 9 230 526 288 583 1.10e-36 144
Msa1439400 AT1G53780.2 32.468 308 185 9 230 526 310 605 1.32e-36 144
Msa1439400 AT1G79560.3 35.593 236 135 5 300 522 505 736 1.84e-36 145
Msa1439400 AT1G79560.2 35.865 237 133 6 300 522 505 736 2.73e-36 145
Msa1439400 AT1G79560.1 35.593 236 135 5 300 522 505 736 3.11e-36 145
Msa1439400 AT2G03670.1 40.693 231 124 6 285 505 283 510 1.20e-33 135
Msa1439400 AT2G03670.1 38.140 215 113 6 311 511 46 254 1.26e-27 117
Msa1439400 AT3G01610.2 37.857 280 145 9 287 548 232 500 5.40e-32 132
Msa1439400 AT3G01610.2 35.802 243 143 6 285 518 525 763 3.70e-28 120
Msa1439400 AT3G01610.1 37.943 282 142 10 287 548 232 500 5.77e-32 132
Msa1439400 AT3G01610.1 35.802 243 143 6 285 518 525 763 3.56e-28 120
Msa1439400 AT1G03000.1 35.146 239 138 8 280 506 650 883 2.61e-31 130
Msa1439400 AT3G04340.1 38.587 184 108 1 285 463 781 964 2.53e-30 127
Msa1439400 AT3G15120.1 38.164 207 110 6 313 506 745 946 9.06e-30 125
Msa1439400 AT3G15120.2 38.164 207 110 6 313 506 755 956 1.01e-29 125
Msa1439400 AT5G08470.1 36.777 242 131 7 285 515 841 1071 1.17e-29 125
Msa1439400 AT5G08470.3 36.777 242 131 7 285 515 832 1062 1.23e-29 125
Msa1439400 AT2G03670.2 38.140 215 113 6 311 511 46 254 2.21e-28 118
Msa1439400 AT2G03670.2 39.716 141 77 4 285 418 283 422 5.91e-15 77.8
Msa1439400 AT1G05910.1 35.433 254 145 7 282 521 375 623 7.00e-28 119
Msa1439400 AT5G52882.1 35.294 255 142 9 281 524 510 752 3.22e-27 117
Msa1439400 AT4G28000.1 36.596 235 132 7 281 505 511 738 7.08e-27 116
Msa1439400 AT4G28000.3 36.596 235 132 7 281 505 513 740 7.39e-27 116
Msa1439400 AT4G28000.2 36.596 235 132 7 281 505 513 740 7.62e-27 116
Msa1439400 AT3G27120.1 32.404 287 166 12 278 547 396 671 7.99e-27 115
Msa1439400 AT2G27600.1 37.313 201 112 7 277 471 124 316 1.71e-26 112
Msa1439400 AT1G02890.1 35.156 256 148 9 280 523 936 1185 7.41e-26 113
Msa1439400 AT1G64110.1 35.498 231 133 7 285 505 513 737 1.80e-25 112
Msa1439400 AT1G64110.5 35.498 231 133 7 285 505 516 740 1.81e-25 112
Msa1439400 AT1G64110.3 35.498 231 133 7 285 505 516 740 1.81e-25 112
Msa1439400 AT1G64110.2 35.498 231 133 7 285 505 518 742 1.91e-25 112
Msa1439400 AT1G64110.4 35.498 231 133 7 285 505 518 742 1.91e-25 112
Msa1439400 AT5G53540.1 36.797 231 130 8 285 505 84 308 3.18e-25 108
Msa1439400 AT1G80350.1 35.484 248 137 8 285 516 236 476 4.37e-25 109
Msa1439400 AT2G34560.1 32.143 252 156 6 285 526 100 346 8.43e-25 107
Msa1439400 AT2G34560.2 32.143 252 156 6 285 526 109 355 1.00e-24 107
Msa1439400 AT4G02480.1 34.874 238 138 8 280 506 955 1186 1.57e-24 109
Msa1439400 AT2G45500.4 31.760 233 144 7 282 505 77 303 3.50e-24 104
Msa1439400 AT2G45500.3 31.760 233 144 7 282 505 77 303 3.50e-24 104
Msa1439400 AT4G24860.3 34.156 243 146 7 280 514 810 1046 3.85e-24 108
Msa1439400 AT4G24860.1 34.156 243 146 7 280 514 812 1048 4.17e-24 107
Msa1439400 AT4G24860.2 34.156 243 146 7 280 514 808 1044 5.05e-24 107
Msa1439400 AT4G24860.4 34.156 243 146 7 280 514 785 1021 6.07e-24 107
Msa1439400 AT1G50140.3 33.591 259 151 8 280 527 706 954 1.21e-23 106
Msa1439400 AT1G50140.1 33.591 259 151 8 280 527 706 954 1.21e-23 106
Msa1439400 AT1G50140.4 33.591 259 151 8 280 527 706 954 1.21e-23 106
Msa1439400 AT1G50140.2 33.591 259 151 8 280 527 684 932 1.22e-23 106
Msa1439400 AT1G50140.5 33.591 259 151 8 280 527 684 932 1.22e-23 106
Msa1439400 AT2G45500.1 31.760 233 144 7 282 505 214 440 1.41e-23 104
Msa1439400 AT2G45500.2 31.760 233 144 7 282 505 210 436 1.45e-23 104
Msa1439400 AT2G45500.5 31.760 233 144 7 282 505 220 446 1.53e-23 104
Msa1439400 AT4G04910.1 40.719 167 81 5 315 466 244 407 3.86e-23 104
Msa1439400 AT3G19740.1 32.157 255 152 8 280 523 696 940 4.89e-23 104
Msa1439400 AT4G27680.1 34.746 236 138 8 280 505 76 305 6.49e-23 101
Msa1439400 AT1G45000.2 46.018 113 51 3 313 418 165 274 5.34e-21 94.7
Msa1439400 AT1G62130.2 33.473 239 141 7 280 514 738 962 8.02e-21 97.4
Msa1439400 AT1G62130.1 33.473 239 141 7 280 514 745 969 8.27e-21 97.4
Msa1439400 AT4G04180.2 34.343 198 111 6 285 468 311 503 1.71e-20 95.9
Msa1439400 AT4G04180.1 34.343 198 111 6 285 468 316 508 1.83e-20 95.9
Msa1439400 AT5G08470.2 37.255 153 82 4 285 429 841 987 1.45e-16 84.0
Msa1439400 AT5G17740.1 27.197 239 150 6 313 540 237 462 3.13e-13 72.8
Msa1439400 AT5G17730.1 31.183 186 107 7 283 453 200 379 2.55e-12 69.7
Msa1439400 AT5G17750.1 31.579 171 104 5 313 475 212 377 1.00e-11 67.4

Find 140 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCAACTGTCTGACTATT+AGG 0.199018 tig0028755:-14169 None:intergenic
GCGGCCGAGGTTACGGTTAT+TGG 0.248138 tig0028755:+13497 Msa1439400:CDS
ACTGGCAGATACTGTGAAAA+AGG 0.271192 tig0028755:-16255 None:intergenic
TCATTGAGGTTTCAACAAAA+TGG 0.272591 tig0028755:+13360 Msa1439400:intron
AAGCCGTTGTATTTGTTTAC+AGG 0.284997 tig0028755:+18469 Msa1439400:three_prime_UTR
ATTTCCTTGCTGTACTAAAA+AGG 0.285721 tig0028755:-16325 None:intergenic
CAATCATTGAATTCATGATT+TGG 0.317172 tig0028755:+18319 Msa1439400:exon
GTAGCTTTGCCCCTACCTTT+TGG 0.317824 tig0028755:-16152 None:intergenic
AGTGAAAATTGTTCCGTATT+CGG 0.326742 tig0028755:+13670 Msa1439400:CDS
AGTAATGTCTTGCCAGTTCC+TGG 0.338717 tig0028755:-16201 None:intergenic
GCTATTGAAAGAGCAAAGTT+TGG 0.356257 tig0028755:+18169 Msa1439400:CDS
GATGATAAGAAGAATGATTA+TGG 0.359397 tig0028755:+13426 Msa1439400:CDS
TGATTCAAATCCATCCATTT+CGG 0.359843 tig0028755:-17008 None:intergenic
AACTTGCCTGATTGAGCGTT+TGG 0.362410 tig0028755:-16427 None:intergenic
GCATTTGAGAGGAGTTCCTT+TGG 0.379597 tig0028755:+17168 Msa1439400:CDS
TGTGGCAAGGGAAGATATAA+TGG 0.388759 tig0028755:+18144 Msa1439400:CDS
TTTCTCCTTCCTTCTTCGTC+AGG 0.391335 tig0028755:-17133 None:intergenic
CCCTTGGATGCCATCATTGA+TGG 0.392559 tig0028755:+18249 Msa1439400:CDS
TGAGATTGCGGCCGAGGTTA+CGG 0.403962 tig0028755:+13490 Msa1439400:CDS
AGAAGAATGATTATGGTAAA+GGG 0.405752 tig0028755:+13433 Msa1439400:CDS
TTTCGTTGAGATTGCGGCCG+AGG 0.410912 tig0028755:+13484 Msa1439400:CDS
TTAGGTTTCCGCTTCTTAGC+TGG 0.413254 tig0028755:-14151 None:intergenic
AGGGCTGGATCCAAGGCTTC+TGG 0.417900 tig0028755:-17067 None:intergenic
TTCAATGATTGATAACCTAA+TGG 0.427719 tig0028755:-18307 None:intergenic
TTTCTTTACCTTGTTGTACT+GGG 0.428267 tig0028755:+13178 Msa1439400:CDS
CTTGTCGGTCCTCCAGGAAC+TGG 0.431660 tig0028755:+16189 Msa1439400:CDS
CTTAGTTTGATGAGGGAAAA+GGG 0.432422 tig0028755:+13998 Msa1439400:intron
ATGAGGTTGGAGTGTTTGTT+AGG 0.432614 tig0028755:+13559 Msa1439400:CDS
GATGACATACAAGGACCATT+AGG 0.434995 tig0028755:+18292 Msa1439400:CDS
CTCGCAATCAAGTCCGAATA+CGG 0.437861 tig0028755:-13683 None:intergenic
AAGAAGAATGATTATGGTAA+AGG 0.444958 tig0028755:+13432 Msa1439400:CDS
TTCTTCAATTTATTCAATGC+AGG 0.445292 tig0028755:-13899 None:intergenic
TATTGGTTATGAGGATGAAA+AGG 0.452735 tig0028755:+13514 Msa1439400:CDS
GGTTACGGTTATTGGTTATG+AGG 0.454581 tig0028755:+13505 Msa1439400:CDS
TCTTAGTTTGATGAGGGAAA+AGG 0.455840 tig0028755:+13997 Msa1439400:intron
TTGTCATTGCAGCAACTAAC+CGG 0.455886 tig0028755:+17044 Msa1439400:CDS
TTGATTGCGAGTCTTCGAAA+TGG 0.464901 tig0028755:+13695 Msa1439400:CDS
TCTCGAGGAAAGTATTTGTA+GGG 0.465124 tig0028755:+17107 Msa1439400:CDS
GAGTTCGTTGAAATGTTTGT+TGG 0.467301 tig0028755:+16278 Msa1439400:CDS
CCTAGAGGAGTGTTGCTTGT+CGG 0.467543 tig0028755:+16174 Msa1439400:CDS
GTTGGATTTGAAGATGTTCA+AGG 0.468812 tig0028755:+14184 Msa1439400:CDS
CCCATCAATGATGGCATCCA+AGG 0.469878 tig0028755:-18250 None:intergenic
TGATTGCGAGTCTTCGAAAT+GGG 0.474413 tig0028755:+13696 Msa1439400:CDS
CATTGATGGGAAGAAGTGAT+AGG 0.477672 tig0028755:+18263 Msa1439400:CDS
TTCTCGAGGAAAGTATTTGT+AGG 0.479629 tig0028755:+17106 Msa1439400:CDS
AACTAACCGGCCAGAAGCCT+TGG 0.480710 tig0028755:+17057 Msa1439400:CDS
ATTGGTTATGAGGATGAAAA+GGG 0.482073 tig0028755:+13515 Msa1439400:CDS
GTGTTGCTTGTCGGTCCTCC+AGG 0.483133 tig0028755:+16183 Msa1439400:CDS
AAGAAGCTTCAATGATGAAC+GGG 0.488699 tig0028755:+16403 Msa1439400:CDS
AGTAGATGTTTCGATGGATA+AGG 0.488805 tig0028755:+13829 Msa1439400:CDS
ACGGGACCAAACGCTCAATC+AGG 0.492720 tig0028755:+16421 Msa1439400:CDS
TCATCAATGAATATGATTGA+TGG 0.492788 tig0028755:-16353 None:intergenic
TTACTTGCACGTGCAATAGC+AGG 0.494558 tig0028755:+16219 Msa1439400:CDS
CGACCGGGACGACACAGGGC+TGG 0.495070 tig0028755:-17082 None:intergenic
AGCTTGGTAAGCTGTTCCCT+TGG 0.496185 tig0028755:+18233 Msa1439400:CDS
TACCTTTGATTCCTTTGATG+TGG 0.496607 tig0028755:+14098 Msa1439400:CDS
ATTGTACAAGTAAATTTGAC+AGG 0.498751 tig0028755:-18346 None:intergenic
CTCGTGGAATACTGCCACTC+AGG 0.503338 tig0028755:-13947 None:intergenic
AATAAGTGTGAACAATGAAA+AGG 0.503440 tig0028755:-18374 None:intergenic
ACGACACAGGGCTGGATCCA+AGG 0.506054 tig0028755:-17074 None:intergenic
GTTGAAATGTTTGTTGGAAG+AGG 0.509876 tig0028755:+16284 Msa1439400:CDS
GAGAGGAGTTCCTTTGGAGG+AGG 0.513124 tig0028755:+17174 Msa1439400:CDS
GAATCAATGATAAGCAACTA+AGG 0.515226 tig0028755:+18191 Msa1439400:CDS
GATGTAGTTGCTGACCGAAA+TGG 0.515352 tig0028755:+16994 Msa1439400:intron
CCTTGGATGCCATCATTGAT+GGG 0.519963 tig0028755:+18250 Msa1439400:CDS
AGAAACGACCGGGACGACAC+AGG 0.521094 tig0028755:-17087 None:intergenic
ATCTTAATTACCAAAAGGTA+GGG 0.521468 tig0028755:+16142 Msa1439400:CDS
GAAACGACCGGGACGACACA+GGG 0.522419 tig0028755:-17086 None:intergenic
CCGACAAGCAACACTCCTCT+AGG 0.523663 tig0028755:-16174 None:intergenic
GATCCAGCCCTGTGTCGTCC+CGG 0.528518 tig0028755:+17079 Msa1439400:CDS
CACTTGTTAGTAGTAGAAGT+AGG 0.531041 tig0028755:+13403 Msa1439400:CDS
TTCTGCAAAAGTAGAGCTCA+TGG 0.532444 tig0028755:+14213 Msa1439400:CDS
AGGGGATCTTAATTACCAAA+AGG 0.534990 tig0028755:+16137 Msa1439400:CDS
ATTCCTTCTTAGTTTGATGA+GGG 0.535065 tig0028755:+13991 Msa1439400:intron
TCGGCGTATATATTATAATA+CGG 0.537481 tig0028755:+13751 Msa1439400:CDS
TCACTTCTTCCCATCAATGA+TGG 0.540303 tig0028755:-18259 None:intergenic
ACGTGCAATAGCAGGGAAGC+AGG 0.541963 tig0028755:+16227 Msa1439400:CDS
AATTCCTTCTTAGTTTGATG+AGG 0.542897 tig0028755:+13990 Msa1439400:intron
ACTTGTTAGTAGTAGAAGTA+GGG 0.546654 tig0028755:+13404 Msa1439400:CDS
AGGTTTCAACAAAATGGTGT+TGG 0.547536 tig0028755:+13366 Msa1439400:intron
TAGTTTGATGAGGGAAAAGG+GGG 0.551133 tig0028755:+14000 Msa1439400:intron
AGCCACATCAAAGGAATCAA+AGG 0.552057 tig0028755:-14100 None:intergenic
TTAATTGCCACAGTTACTGA+TGG 0.552662 tig0028755:+17217 Msa1439400:CDS
TTTGAGAGGAGTTCCTTTGG+AGG 0.552837 tig0028755:+17171 Msa1439400:CDS
GATCTTAATTACCAAAAGGT+AGG 0.556895 tig0028755:+16141 Msa1439400:CDS
GAAGAATGATTATGGTAAAG+GGG 0.559832 tig0028755:+13434 Msa1439400:CDS
GGCTCCTCAATCTGTGTTAG+CGG 0.560045 tig0028755:+14036 Msa1439400:CDS
TACTTTCCTCGAGAAACGAC+CGG 0.560952 tig0028755:-17098 None:intergenic
AAGAATGATTATGGTAAAGG+GGG 0.562838 tig0028755:+13435 Msa1439400:CDS
TAGATAGTTTCATGTCTGCA+AGG 0.562996 tig0028755:+16117 Msa1439400:intron
AGATAGTTTCATGTCTGCAA+GGG 0.563490 tig0028755:+16118 Msa1439400:intron
GATGAACTTGATGCGGTTGG+TGG 0.563575 tig0028755:+16371 Msa1439400:CDS
ATTGATGAACTTGATGCGGT+TGG 0.564921 tig0028755:+16368 Msa1439400:CDS
ACTTTCCTCGAGAAACGACC+GGG 0.571156 tig0028755:-17097 None:intergenic
ATATTAGCTGTGCATTTGAG+AGG 0.572900 tig0028755:+17157 Msa1439400:CDS
AGTAAAATAAGCAAGGAGCT+TGG 0.574154 tig0028755:+18217 Msa1439400:CDS
CTGGATCCAAGGCTTCTGGC+CGG 0.574869 tig0028755:-17063 None:intergenic
ATCGCCGCTAACACAGATTG+AGG 0.577228 tig0028755:-14040 None:intergenic
AGTGAGAATGCTGTAAGATC+TGG 0.580335 tig0028755:+13869 Msa1439400:CDS
GAGAATGCTGTAAGATCTGG+TGG 0.581579 tig0028755:+13872 Msa1439400:CDS
GTAGGGGAACCTGACGAAGA+AGG 0.589232 tig0028755:+17124 Msa1439400:CDS
GCTTTGCTTGCTGCTCGAAG+AGG 0.589336 tig0028755:+17280 Msa1439400:CDS
AAACCTAATAGTCAGACAGT+TGG 0.591387 tig0028755:+14166 Msa1439400:CDS
AGGTAGTGAAACTGTGGCAA+GGG 0.592368 tig0028755:+18132 Msa1439400:intron
CTCGAGGAAAGTATTTGTAG+GGG 0.592820 tig0028755:+17108 Msa1439400:CDS
AAGGTCTAGTAAAATAAGCA+AGG 0.598431 tig0028755:+18210 Msa1439400:CDS
CTGCTAGTCCAGCTAAGAAG+CGG 0.598949 tig0028755:+14143 Msa1439400:CDS
GAAGAAGCTTCAATGATGAA+CGG 0.603023 tig0028755:+16402 Msa1439400:CDS
AGGAAACAAGATGACATACA+AGG 0.608187 tig0028755:+18283 Msa1439400:CDS
GGGAACCTGACGAAGAAGGA+AGG 0.608258 tig0028755:+17128 Msa1439400:CDS
TACTTGCACGTGCAATAGCA+GGG 0.609835 tig0028755:+16220 Msa1439400:CDS
TTAGTTTGATGAGGGAAAAG+GGG 0.610943 tig0028755:+13999 Msa1439400:intron
ATGTTAGCATCCTCCTCCAA+AGG 0.613955 tig0028755:-17184 None:intergenic
CAGGTAGTGAAACTGTGGCA+AGG 0.614725 tig0028755:+18131 Msa1439400:intron
TCTTAATTACCAAAAGGTAG+GGG 0.616122 tig0028755:+16143 Msa1439400:CDS
CCATCAATGATGGCATCCAA+GGG 0.617279 tig0028755:-18249 None:intergenic
CTACTTCTACTACTAACAAG+TGG 0.617574 tig0028755:-13402 None:intergenic
GATGCGGTTGGTGGCAAGCG+TGG 0.625586 tig0028755:+16380 Msa1439400:CDS
ACAAGTAGTAGATGTTTCGA+TGG 0.632621 tig0028755:+13823 Msa1439400:CDS
AAGAAATTCTCTAAGAGACG+AGG 0.632753 tig0028755:+13917 Msa1439400:CDS
CGATATATAAGCCACATCAA+AGG 0.635077 tig0028755:-14109 None:intergenic
TAACCTGTAAACAAATACAA+CGG 0.637673 tig0028755:-18472 None:intergenic
GATAGTTTCATGTCTGCAAG+GGG 0.647274 tig0028755:+16119 Msa1439400:intron
AATCTGTGTTAGCGGCGATG+AGG 0.652895 tig0028755:+14044 Msa1439400:CDS
ATTCATTGATGAACTTGATG+CGG 0.654455 tig0028755:+16364 Msa1439400:CDS
AGAATGATTATGGTAAAGGG+GGG 0.655129 tig0028755:+13436 Msa1439400:CDS
ATAACCAATAACCGTAACCT+CGG 0.664720 tig0028755:-13501 None:intergenic
CTCTGCAGGTAGTGAAACTG+TGG 0.666734 tig0028755:+18126 Msa1439400:intron
GAAAATGACCCAGTACAACA+AGG 0.669902 tig0028755:-13186 None:intergenic
TAGTTGCTGACCGAAATGGA+TGG 0.680096 tig0028755:+16998 Msa1439400:intron
TACGAGACCATCAGTAACTG+TGG 0.680129 tig0028755:-17224 None:intergenic
GTAGGGGCAAAGCTACCTAG+AGG 0.692537 tig0028755:+16159 Msa1439400:CDS
ATTTGAATCAGAAATGAGAG+TGG 0.693418 tig0028755:+17021 Msa1439400:CDS
GACGAGGTTCGATTCCTGAG+TGG 0.695014 tig0028755:+13933 Msa1439400:CDS
GAGTCTTCGAAATGGGAATG+TGG 0.703259 tig0028755:+13703 Msa1439400:CDS
GATGGATAAGGATATAGACA+AGG 0.709329 tig0028755:+13841 Msa1439400:CDS
AATGTCTTGCCAGTTCCTGG+AGG 0.719587 tig0028755:-16198 None:intergenic
TCTTCGAGCAGCAAGCAAAG+CGG 0.719728 tig0028755:-17278 None:intergenic
TGCAAAAGTAGAGCTCATGG+AGG 0.758952 tig0028755:+14216 Msa1439400:CDS
TGATAACTGTGATCACACTG+TGG 0.773244 tig0028755:+14074 Msa1439400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATATAATCTAATAAAATT+AGG + tig0028755:15327-15346 Msa1439400:intron 10.0%
!! AATAATTTGATAAAAAAAAC+TGG - tig0028755:16835-16854 None:intergenic 10.0%
!!! ATTCTATATAAATTGAATTT+TGG + tig0028755:17438-17457 Msa1439400:intron 10.0%
!!! GTTAAAAATTAGGAATTTTA+GGG + tig0028755:13221-13240 Msa1439400:CDS 15.0%
!!! AATGCTATAATTTTGAAAAT+GGG + tig0028755:13286-13305 Msa1439400:CDS 15.0%
!! AATAAGAAATTTGAGTATTA+TGG + tig0028755:13318-13337 Msa1439400:intron 15.0%
!! TAATTACTTATAACCATATT+CGG + tig0028755:14630-14649 Msa1439400:intron 15.0%
!!! CTAAATGTTGTATTTTAAAA+GGG + tig0028755:15785-15804 Msa1439400:intron 15.0%
!! ATAACATTAAAACATCTTAT+AGG + tig0028755:17782-17801 Msa1439400:intron 15.0%
!! AATTTCTATTACAAAAGATA+AGG - tig0028755:17832-17851 None:intergenic 15.0%
!!! TCAAAACTAATTCATTTTAT+AGG - tig0028755:18511-18530 None:intergenic 15.0%
!!! AAATGAATTAGTTTTGATTT+TGG + tig0028755:18514-18533 Msa1439400:three_prime_UTR 15.0%
!!! TTCCTAATTTTTAACCTATT+TGG - tig0028755:13216-13235 None:intergenic 20.0%
!!! GGTTAAAAATTAGGAATTTT+AGG + tig0028755:13220-13239 Msa1439400:CDS 20.0%
!!! CAATGCTATAATTTTGAAAA+TGG + tig0028755:13285-13304 Msa1439400:CDS 20.0%
!!! ATTTTGAAAATGGGTTTTTA+TGG + tig0028755:13295-13314 Msa1439400:CDS 20.0%
!!! AAAGTAGAAATTTTTCATTG+AGG + tig0028755:13346-13365 Msa1439400:intron 20.0%
!!! TGTTTGTTAGGAAAAATATT+AGG + tig0028755:13571-13590 Msa1439400:CDS 20.0%
!!! TACAAACTTTTATTCTTATG+CGG + tig0028755:14356-14375 Msa1439400:intron 20.0%
!!! ATGTAATTTGTCTTTTTGAA+TGG + tig0028755:14409-14428 Msa1439400:intron 20.0%
!!! AAATAAGTATAGTTTTTCCA+TGG + tig0028755:14472-14491 Msa1439400:intron 20.0%
!!! AATAAGTATAGTTTTTCCAT+GGG + tig0028755:14473-14492 Msa1439400:intron 20.0%
!! TTACTTAATTGTTTACATCT+AGG + tig0028755:14851-14870 Msa1439400:intron 20.0%
!!! AAACAAGTAGAGTATTATAT+AGG + tig0028755:14916-14935 Msa1439400:intron 20.0%
!!! AACAAGTAGAGTATTATATA+GGG + tig0028755:14917-14936 Msa1439400:intron 20.0%
!! TTTGTGTATCAATATACAAA+TGG + tig0028755:14968-14987 Msa1439400:intron 20.0%
!!! ATAAAATAAGAGAAAAGTGT+TGG - tig0028755:15084-15103 None:intergenic 20.0%
!! ATGGTCAAAAATTAAAGTTA+CGG - tig0028755:15241-15260 None:intergenic 20.0%
!!! AAGTTTAATTTGGTTTTGAT+AGG - tig0028755:15448-15467 None:intergenic 20.0%
!!! GTTAAAAGTATCAAATATCT+CGG - tig0028755:15601-15620 None:intergenic 20.0%
!!! GCTAAATGTTGTATTTTAAA+AGG + tig0028755:15784-15803 Msa1439400:intron 20.0%
!!! TACAAAATTTTGATGCAATT+GGG - tig0028755:15853-15872 None:intergenic 20.0%
!! AATATAAAAGCAATACAGAT+TGG - tig0028755:15919-15938 None:intergenic 20.0%
!!! GTTTTCATCATTTCTAATTT+TGG + tig0028755:16027-16046 Msa1439400:intron 20.0%
!! AAATGACATAGAAAATTGAT+TGG - tig0028755:16611-16630 None:intergenic 20.0%
!! TTGATTTATGATTTGAATCT+TGG + tig0028755:16629-16648 Msa1439400:intron 20.0%
!! TTCATAATAAGATTTGATTC+AGG + tig0028755:16737-16756 Msa1439400:intron 20.0%
!! ATCAACGAAAAATTCTTTAA+AGG - tig0028755:16977-16996 None:intergenic 20.0%
!! TCACACAAGTTAATAATATA+CGG - tig0028755:17412-17431 None:intergenic 20.0%
!! AAAACATCTTATAGGTTATA+TGG + tig0028755:17790-17809 Msa1439400:intron 20.0%
!! AATATCATCATTTAATGTGA+AGG - tig0028755:18046-18065 None:intergenic 20.0%
!! AAAAAAATTGTTTGCATACA+AGG - tig0028755:18401-18420 None:intergenic 20.0%
! CACCAAATAGGTTAAAAATT+AGG + tig0028755:13211-13230 Msa1439400:CDS 25.0%
! GATGATAAGAAGAATGATTA+TGG + tig0028755:13426-13445 Msa1439400:CDS 25.0%
! AAGAAGAATGATTATGGTAA+AGG + tig0028755:13432-13451 Msa1439400:CDS 25.0%
! AGAAGAATGATTATGGTAAA+GGG + tig0028755:13433-13452 Msa1439400:CDS 25.0%
! TGTTAGGAAAAATATTAGGA+CGG + tig0028755:13575-13594 Msa1439400:CDS 25.0%
!!! TTTTGAAGTTTACTTCACTT+CGG + tig0028755:13645-13664 Msa1439400:intron 25.0%
! TCGGCGTATATATTATAATA+CGG + tig0028755:13751-13770 Msa1439400:CDS 25.0%
! TGAGAATGTTGAAAATGATA+AGG + tig0028755:13778-13797 Msa1439400:intron 25.0%
! TTCTTCAATTTATTCAATGC+AGG - tig0028755:13902-13921 None:intergenic 25.0%
!! TACTCAAAGCTTTTATGTTT+TGG - tig0028755:14537-14556 None:intergenic 25.0%
! GAGATAAAAAATTCCGAATA+TGG - tig0028755:14646-14665 None:intergenic 25.0%
! TATCTAGATAGATAGTCAAA+TGG - tig0028755:14691-14710 None:intergenic 25.0%
! TACTTGTTTAATTGTACCTT+TGG - tig0028755:14905-14924 None:intergenic 25.0%
!! ACAAGTAGAGTATTATATAG+GGG + tig0028755:14918-14937 Msa1439400:intron 25.0%
! AAACTGAATCTCATAAAACA+GGG - tig0028755:15117-15136 None:intergenic 25.0%
! TAAACTGAATCTCATAAAAC+AGG - tig0028755:15118-15137 None:intergenic 25.0%
! TCAGTTTAATCATTATGCTT+CGG + tig0028755:15130-15149 Msa1439400:intron 25.0%
!!! GTTTTTCAGTTTGTTGATTT+TGG - tig0028755:15384-15403 None:intergenic 25.0%
! ATATTTATTTGATCCTTCCT+CGG + tig0028755:15653-15672 Msa1439400:intron 25.0%
!! TTGTAATTTTATCACTCAAC+CGG - tig0028755:15749-15768 None:intergenic 25.0%
!!! CTACAAAATTTTGATGCAAT+TGG - tig0028755:15854-15873 None:intergenic 25.0%
! ATCATTCAATGAATACAACA+CGG - tig0028755:15894-15913 None:intergenic 25.0%
! ATAGTCACAATTCAAAGAAA+CGG - tig0028755:15945-15964 None:intergenic 25.0%
! TTTCTTTGAATTGTGACTAT+TGG + tig0028755:15945-15964 Msa1439400:intron 25.0%
! TAGAAATGATGAAAACGTAA+AGG - tig0028755:16023-16042 None:intergenic 25.0%
! ATGAAACTATCTACAAATCA+GGG - tig0028755:16110-16129 None:intergenic 25.0%
! ATCTTAATTACCAAAAGGTA+GGG + tig0028755:16142-16161 Msa1439400:CDS 25.0%
! TCATCAATGAATATGATTGA+TGG - tig0028755:16356-16375 None:intergenic 25.0%
! CAAAGTTGACAAAAAAAAAG+TGG - tig0028755:16583-16602 None:intergenic 25.0%
! TGATTCAGGATTTGAAAAAT+AGG + tig0028755:16751-16770 Msa1439400:intron 25.0%
! ACATCTAAATTGTTTGACAA+TGG - tig0028755:16812-16831 None:intergenic 25.0%
! TTTAGTATATACTGTCTACA+TGG + tig0028755:16869-16888 Msa1439400:intron 25.0%
! TAAATATTCAACGTGTTCAT+TGG + tig0028755:16896-16915 Msa1439400:intron 25.0%
! ATCTAACAAAGAATCATCAT+TGG - tig0028755:17357-17376 None:intergenic 25.0%
! TAAAATCAAATAGTGCATGA+AGG + tig0028755:17521-17540 Msa1439400:intron 25.0%
!! TCTGAAGTAGTTATATCTAA+GGG + tig0028755:17654-17673 Msa1439400:intron 25.0%
!! TGATGTATTTGAGTTAACTA+TGG + tig0028755:17688-17707 Msa1439400:intron 25.0%
!! ATGTTATTCTAAAGAGCTTA+TGG - tig0028755:17769-17788 None:intergenic 25.0%
!!! GAAAGCATTTATGATATAAG+CGG + tig0028755:17875-17894 Msa1439400:intron 25.0%
!! TTCAATGATTGATAACCTAA+TGG - tig0028755:18310-18329 None:intergenic 25.0%
! CAATCATTGAATTCATGATT+TGG + tig0028755:18319-18338 Msa1439400:exon 25.0%
! ATTGTACAAGTAAATTTGAC+AGG - tig0028755:18349-18368 None:intergenic 25.0%
! AATAAGTGTGAACAATGAAA+AGG - tig0028755:18377-18396 None:intergenic 25.0%
! TAACCTGTAAACAAATACAA+CGG - tig0028755:18475-18494 None:intergenic 25.0%
!! TTTTCTTTACCTTGTTGTAC+TGG + tig0028755:13177-13196 Msa1439400:CDS 30.0%
! TTTCTTTACCTTGTTGTACT+GGG + tig0028755:13178-13197 Msa1439400:CDS 30.0%
!!! AGGAATTTTAGGGTTTATAG+AGG + tig0028755:13231-13250 Msa1439400:CDS 30.0%
TCATTGAGGTTTCAACAAAA+TGG + tig0028755:13360-13379 Msa1439400:intron 30.0%
! ACTTGTTAGTAGTAGAAGTA+GGG + tig0028755:13404-13423 Msa1439400:CDS 30.0%
GAAGAATGATTATGGTAAAG+GGG + tig0028755:13434-13453 Msa1439400:CDS 30.0%
AAGAATGATTATGGTAAAGG+GGG + tig0028755:13435-13454 Msa1439400:CDS 30.0%
! TATTGGTTATGAGGATGAAA+AGG + tig0028755:13514-13533 Msa1439400:CDS 30.0%
ATTGGTTATGAGGATGAAAA+GGG + tig0028755:13515-13534 Msa1439400:CDS 30.0%
!! TCTTGAATCTGTTTTGAATG+AGG + tig0028755:13542-13561 Msa1439400:CDS 30.0%
AGTGAAAATTGTTCCGTATT+CGG + tig0028755:13670-13689 Msa1439400:CDS 30.0%
!!! GAGAAAGTTTTAGTTGAAGA+GGG + tig0028755:13725-13744 Msa1439400:CDS 30.0%
!!! AGAAAGTTTTAGTTGAAGAG+GGG + tig0028755:13726-13745 Msa1439400:CDS 30.0%
! AATTCCTTCTTAGTTTGATG+AGG + tig0028755:13990-14009 Msa1439400:intron 30.0%
! ATTCCTTCTTAGTTTGATGA+GGG + tig0028755:13991-14010 Msa1439400:intron 30.0%
! AGGTAACAATCTCATCTTTT+AGG + tig0028755:14236-14255 Msa1439400:intron 30.0%
CCTGATGAGATAAATATCAT+TGG - tig0028755:14312-14331 None:intergenic 30.0%
CCAATGATATTTATCTCATC+AGG + tig0028755:14309-14328 Msa1439400:intron 30.0%
!! GTTTCTAGTATTTCGTTAAC+TGG + tig0028755:14333-14352 Msa1439400:intron 30.0%
! AATGGTTAAGTAAGACCTTT+TGG + tig0028755:14427-14446 Msa1439400:intron 30.0%
CATCTTTGTATGTTACCAAA+AGG - tig0028755:14445-14464 None:intergenic 30.0%
!! CTTTTGGTAACATACAAAGA+TGG + tig0028755:14443-14462 Msa1439400:intron 30.0%
AGAAAGTTCAACTAACTTCT+TGG + tig0028755:14567-14586 Msa1439400:intron 30.0%
TTCAACTAACTTCTTGGTTT+AGG + tig0028755:14573-14592 Msa1439400:intron 30.0%
AAGTAAATCATATATTCCCG+AGG + tig0028755:14767-14786 Msa1439400:intron 30.0%
TCTTTGAATCACAAAATGTC+AGG + tig0028755:14805-14824 Msa1439400:intron 30.0%
! CAAGTAGAGTATTATATAGG+GGG + tig0028755:14919-14938 Msa1439400:intron 30.0%
AACTGAATCTCATAAAACAG+GGG - tig0028755:15116-15135 None:intergenic 30.0%
GTCAAAAATTAAAGTTACGG+TGG - tig0028755:15238-15257 None:intergenic 30.0%
TGACACACACAAGTTTAATT+TGG - tig0028755:15458-15477 None:intergenic 30.0%
CAATCTATAGCAGTTTGAAT+TGG - tig0028755:15714-15733 None:intergenic 30.0%
CAATTCAAACTGCTATAGAT+TGG + tig0028755:15712-15731 Msa1439400:intron 30.0%
! TTAAAAGGGTATAGTACATG+TGG + tig0028755:15799-15818 Msa1439400:intron 30.0%
!!! TCAACTCGCTATAGTTTTAA+GGG - tig0028755:15982-16001 None:intergenic 30.0%
!! TTCAACTCGCTATAGTTTTA+AGG - tig0028755:15983-16002 None:intergenic 30.0%
CATGAAACTATCTACAAATC+AGG - tig0028755:16111-16130 None:intergenic 30.0%
GATCTTAATTACCAAAAGGT+AGG + tig0028755:16141-16160 Msa1439400:CDS 30.0%
TCTTAATTACCAAAAGGTAG+GGG + tig0028755:16143-16162 Msa1439400:CDS 30.0%
! ATTTCCTTGCTGTACTAAAA+AGG - tig0028755:16328-16347 None:intergenic 30.0%
ATTCATTGATGAACTTGATG+CGG + tig0028755:16364-16383 Msa1439400:CDS 30.0%
TCAATATCTTAAGATGCATG+TGG + tig0028755:16503-16522 Msa1439400:intron 30.0%
GGCTACATTAAGTTTAAAAG+AGG - tig0028755:16558-16577 None:intergenic 30.0%
GTTGACAAAAAAAAAGTGGT+TGG - tig0028755:16579-16598 None:intergenic 30.0%
GATTCAAATCATGAATCAGA+AGG - tig0028755:16777-16796 None:intergenic 30.0%
TGATTCAAATCCATCCATTT+CGG - tig0028755:17011-17030 None:intergenic 30.0%
ATTTGAATCAGAAATGAGAG+TGG + tig0028755:17021-17040 Msa1439400:CDS 30.0%
!! AGCTGATTTTATATGCTATC+TGG + tig0028755:17566-17585 Msa1439400:intron 30.0%
!! GCTGATTTTATATGCTATCT+GGG + tig0028755:17567-17586 Msa1439400:intron 30.0%
!! CTCTGAAGTAGTTATATCTA+AGG + tig0028755:17653-17672 Msa1439400:intron 30.0%
GAATCAATGATAAGCAACTA+AGG + tig0028755:18191-18210 Msa1439400:CDS 30.0%
AAGGTCTAGTAAAATAAGCA+AGG + tig0028755:18210-18229 Msa1439400:CDS 30.0%
AGGTTTCAACAAAATGGTGT+TGG + tig0028755:13366-13385 Msa1439400:intron 35.0%
CTACTTCTACTACTAACAAG+TGG - tig0028755:13405-13424 None:intergenic 35.0%
! CACTTGTTAGTAGTAGAAGT+AGG + tig0028755:13403-13422 Msa1439400:CDS 35.0%
AGAATGATTATGGTAAAGGG+GGG + tig0028755:13436-13455 Msa1439400:CDS 35.0%
! AGAGATTTTCGTTGAGATTG+CGG + tig0028755:13478-13497 Msa1439400:CDS 35.0%
ATAACCAATAACCGTAACCT+CGG - tig0028755:13504-13523 None:intergenic 35.0%
!! GAATCTGTTTTGAATGAGGT+TGG + tig0028755:13546-13565 Msa1439400:CDS 35.0%
TAGGAAAAATATTAGGACGG+TGG + tig0028755:13578-13597 Msa1439400:intron 35.0%
! GAATACGGAACAATTTTCAC+TGG - tig0028755:13671-13690 None:intergenic 35.0%
!!! GGAGAAAGTTTTAGTTGAAG+AGG + tig0028755:13724-13743 Msa1439400:CDS 35.0%
ACAAGTAGTAGATGTTTCGA+TGG + tig0028755:13823-13842 Msa1439400:CDS 35.0%
AGTAGATGTTTCGATGGATA+AGG + tig0028755:13829-13848 Msa1439400:CDS 35.0%
GATGGATAAGGATATAGACA+AGG + tig0028755:13841-13860 Msa1439400:CDS 35.0%
! AAGAAATTCTCTAAGAGACG+AGG + tig0028755:13917-13936 Msa1439400:CDS 35.0%
!! GTCATGATCTATTTTTCTCG+TGG - tig0028755:13966-13985 None:intergenic 35.0%
TTTCCCTCATCAAACTAAGA+AGG - tig0028755:13997-14016 None:intergenic 35.0%
! TCTTAGTTTGATGAGGGAAA+AGG + tig0028755:13997-14016 Msa1439400:intron 35.0%
! CTTAGTTTGATGAGGGAAAA+GGG + tig0028755:13998-14017 Msa1439400:intron 35.0%
! TTAGTTTGATGAGGGAAAAG+GGG + tig0028755:13999-14018 Msa1439400:intron 35.0%
TACCTTTGATTCCTTTGATG+TGG + tig0028755:14098-14117 Msa1439400:CDS 35.0%
CGATATATAAGCCACATCAA+AGG - tig0028755:14112-14131 None:intergenic 35.0%
AAACCTAATAGTCAGACAGT+TGG + tig0028755:14166-14185 Msa1439400:CDS 35.0%
AATCCAACTGTCTGACTATT+AGG - tig0028755:14172-14191 None:intergenic 35.0%
GTTGGATTTGAAGATGTTCA+AGG + tig0028755:14184-14203 Msa1439400:CDS 35.0%
TTCCATGGGATTATAATCAG+TGG + tig0028755:14487-14506 Msa1439400:intron 35.0%
! TACCACTGATTATAATCCCA+TGG - tig0028755:14492-14511 None:intergenic 35.0%
!!! CAGTGGTAGATTTTAGCTTT+TGG + tig0028755:14504-14523 Msa1439400:intron 35.0%
!!! GTAGATTTTAGCTTTTGGCA+CGG + tig0028755:14509-14528 Msa1439400:intron 35.0%
!!! GGATTTTTGAGATGTGACAT+TGG + tig0028755:14594-14613 Msa1439400:intron 35.0%
CTAAGAATCGTGATTAGCAA+TGG - tig0028755:15001-15020 None:intergenic 35.0%
AAAATTAAAGTTACGGTGGC+AGG - tig0028755:15234-15253 None:intergenic 35.0%
ACTGTAAACCTCACCTATAT+AGG + tig0028755:15291-15310 Msa1439400:intron 35.0%
CTGTAAACCTCACCTATATA+GGG + tig0028755:15292-15311 Msa1439400:intron 35.0%
TGTAAACCTCACCTATATAG+GGG + tig0028755:15293-15312 Msa1439400:intron 35.0%
ATTTATGAGCACCCCTATAT+AGG - tig0028755:15307-15326 None:intergenic 35.0%
!!! TTACTTTTTTCTTCCGAGGA+AGG - tig0028755:15669-15688 None:intergenic 35.0%
!!! GTCTTTACTTTTTTCTTCCG+AGG - tig0028755:15673-15692 None:intergenic 35.0%
TAAAGACTTAAACCGAGACA+AGG + tig0028755:15686-15705 Msa1439400:intron 35.0%
TTTGAATTGGATCCTTGTCT+CGG - tig0028755:15701-15720 None:intergenic 35.0%
! TAGATTGGATTAGAGTGAAC+CGG + tig0028755:15727-15746 Msa1439400:intron 35.0%
TAGATAGTTTCATGTCTGCA+AGG + tig0028755:16117-16136 Msa1439400:intron 35.0%
AGATAGTTTCATGTCTGCAA+GGG + tig0028755:16118-16137 Msa1439400:intron 35.0%
AGGGGATCTTAATTACCAAA+AGG + tig0028755:16137-16156 Msa1439400:CDS 35.0%
AAACATTTCAACGAACTCAC+TGG - tig0028755:16276-16295 None:intergenic 35.0%
GAGTTCGTTGAAATGTTTGT+TGG + tig0028755:16278-16297 Msa1439400:CDS 35.0%
! GTTGAAATGTTTGTTGGAAG+AGG + tig0028755:16284-16303 Msa1439400:CDS 35.0%
GAAGAAGCTTCAATGATGAA+CGG + tig0028755:16402-16421 Msa1439400:CDS 35.0%
AAGAAGCTTCAATGATGAAC+GGG + tig0028755:16403-16422 Msa1439400:CDS 35.0%
GCAACAATTGATTGAACTCA+TGG + tig0028755:16477-16496 Msa1439400:intron 35.0%
! TTCTTTAAAGGTCAGCTTAG+AGG - tig0028755:16965-16984 None:intergenic 35.0%
!! TTCTCGAGGAAAGTATTTGT+AGG + tig0028755:17106-17125 Msa1439400:CDS 35.0%
!! TCTCGAGGAAAGTATTTGTA+GGG + tig0028755:17107-17126 Msa1439400:CDS 35.0%
TTAATTGCCACAGTTACTGA+TGG + tig0028755:17217-17236 Msa1439400:CDS 35.0%
ATCATGTCACATAAGCACTT+AGG - tig0028755:17928-17947 None:intergenic 35.0%
TGAAGGTGAAAAGTCAATGA+AGG - tig0028755:18029-18048 None:intergenic 35.0%
GCTATTGAAAGAGCAAAGTT+TGG + tig0028755:18169-18188 Msa1439400:CDS 35.0%
AGTAAAATAAGCAAGGAGCT+TGG + tig0028755:18217-18236 Msa1439400:CDS 35.0%
AGGAAACAAGATGACATACA+AGG + tig0028755:18283-18302 Msa1439400:CDS 35.0%
AAGCCGTTGTATTTGTTTAC+AGG + tig0028755:18469-18488 Msa1439400:three_prime_UTR 35.0%
GAAAATGACCCAGTACAACA+AGG - tig0028755:13189-13208 None:intergenic 40.0%
!! GGTCATTTTCGACACCAAAT+AGG + tig0028755:13199-13218 Msa1439400:CDS 40.0%
! GGTTACGGTTATTGGTTATG+AGG + tig0028755:13505-13524 Msa1439400:CDS 40.0%
! ATGAGGTTGGAGTGTTTGTT+AGG + tig0028755:13559-13578 Msa1439400:CDS 40.0%
TTGATTGCGAGTCTTCGAAA+TGG + tig0028755:13695-13714 Msa1439400:CDS 40.0%
TGATTGCGAGTCTTCGAAAT+GGG + tig0028755:13696-13715 Msa1439400:CDS 40.0%
!! TTTTAGTTGAAGAGGGGTCT+CGG + tig0028755:13732-13751 Msa1439400:CDS 40.0%
AGTGAGAATGCTGTAAGATC+TGG + tig0028755:13869-13888 Msa1439400:CDS 40.0%
TAGTTTGATGAGGGAAAAGG+GGG + tig0028755:14000-14019 Msa1439400:intron 40.0%
AAAGGGGGTTACATTTAGCT+CGG + tig0028755:14015-14034 Msa1439400:CDS 40.0%
TGATAACTGTGATCACACTG+TGG + tig0028755:14074-14093 Msa1439400:CDS 40.0%
AGCCACATCAAAGGAATCAA+AGG - tig0028755:14103-14122 None:intergenic 40.0%
TTCTGCAAAAGTAGAGCTCA+TGG + tig0028755:14213-14232 Msa1439400:CDS 40.0%
CTTTGGTACCACAAAAGCAA+GGG - tig0028755:14888-14907 None:intergenic 40.0%
! GTAGAGTATTATATAGGGGG+TGG + tig0028755:14922-14941 Msa1439400:intron 40.0%
TCACGATTCTTAGCGTGTAT+TGG + tig0028755:15008-15027 Msa1439400:intron 40.0%
GGAGCATAGTATTTCAGTGA+CGG - tig0028755:15063-15082 None:intergenic 40.0%
AATCTCATAAAACAGGGGAG+AGG - tig0028755:15111-15130 None:intergenic 40.0%
! GATGAAAACGTAAAGGCATG+AGG - tig0028755:16016-16035 None:intergenic 40.0%
TCAGGGACAGTGTCAATATA+CGG - tig0028755:16093-16112 None:intergenic 40.0%
GATAGTTTCATGTCTGCAAG+GGG + tig0028755:16119-16138 Msa1439400:intron 40.0%
CTGGCAGATACTGTGAAAAA+GGG - tig0028755:16257-16276 None:intergenic 40.0%
ACTGGCAGATACTGTGAAAA+AGG - tig0028755:16258-16277 None:intergenic 40.0%
!! GAGACCTTTTTAGTACAGCA+AGG + tig0028755:16321-16340 Msa1439400:CDS 40.0%
ATTGATGAACTTGATGCGGT+TGG + tig0028755:16368-16387 Msa1439400:CDS 40.0%
TTGTCATTGCAGCAACTAAC+CGG + tig0028755:17044-17063 Msa1439400:CDS 40.0%
!! CTCGAGGAAAGTATTTGTAG+GGG + tig0028755:17108-17127 Msa1439400:CDS 40.0%
! AAGCAGTTGTGAGGCTATTT+TGG + tig0028755:17714-17733 Msa1439400:intron 40.0%
ATAAGCACTTAGGCATGGTT+TGG - tig0028755:17918-17937 None:intergenic 40.0%
GAAAAGTCAATGAAGGCAGA+GGG - tig0028755:18022-18041 None:intergenic 40.0%
TGAAAAGTCAATGAAGGCAG+AGG - tig0028755:18023-18042 None:intergenic 40.0%
AATCCATATTTGCACTCTGC+AGG + tig0028755:18112-18131 Msa1439400:intron 40.0%
TGTGGCAAGGGAAGATATAA+TGG + tig0028755:18144-18163 Msa1439400:CDS 40.0%
TCACTTCTTCCCATCAATGA+TGG - tig0028755:18262-18281 None:intergenic 40.0%
CATTGATGGGAAGAAGTGAT+AGG + tig0028755:18263-18282 Msa1439400:CDS 40.0%
GATGACATACAAGGACCATT+AGG + tig0028755:18292-18311 Msa1439400:CDS 40.0%
!!! CAACGGCTTCTCATTTTTTG+TGG - tig0028755:18458-18477 None:intergenic 40.0%
CTCGCAATCAAGTCCGAATA+CGG - tig0028755:13686-13705 None:intergenic 45.0%
GAGTCTTCGAAATGGGAATG+TGG + tig0028755:13703-13722 Msa1439400:CDS 45.0%
GAGAATGCTGTAAGATCTGG+TGG + tig0028755:13872-13891 Msa1439400:CDS 45.0%
TTAGGTTTCCGCTTCTTAGC+TGG - tig0028755:14154-14173 None:intergenic 45.0%
TGCAAAAGTAGAGCTCATGG+AGG + tig0028755:14216-14235 Msa1439400:CDS 45.0%
ATCTGACATATCAGAGCCTC+GGG - tig0028755:14786-14805 None:intergenic 45.0%
GATCTGACATATCAGAGCCT+CGG - tig0028755:14787-14806 None:intergenic 45.0%
!! AGCTCATACCCTTGCTTTTG+TGG + tig0028755:14877-14896 Msa1439400:intron 45.0%
CCTTTGGTACCACAAAAGCA+AGG - tig0028755:14889-14908 None:intergenic 45.0%
!! CCTTGCTTTTGTGGTACCAA+AGG + tig0028755:14886-14905 Msa1439400:intron 45.0%
TATATAGGGGGTGGCGTTTA+AGG + tig0028755:14931-14950 Msa1439400:intron 45.0%
CAAAACACAAAGCGGTTCAG+AGG - tig0028755:15038-15057 None:intergenic 45.0%
TGACGGTGCAAAACACAAAG+CGG - tig0028755:15046-15065 None:intergenic 45.0%
! TTTCCCATTGGGTTGTTGCT+TGG - tig0028755:15156-15175 None:intergenic 45.0%
ACTTGGCTGTGTTTCCCATT+GGG - tig0028755:15167-15186 None:intergenic 45.0%
GTTGCGTAGCAGTACACAAA+TGG - tig0028755:15260-15279 None:intergenic 45.0%
AGTAATGTCTTGCCAGTTCC+TGG - tig0028755:16204-16223 None:intergenic 45.0%
TTACTTGCACGTGCAATAGC+AGG + tig0028755:16219-16238 Msa1439400:CDS 45.0%
TACTTGCACGTGCAATAGCA+GGG + tig0028755:16220-16239 Msa1439400:CDS 45.0%
AACTTGCCTGATTGAGCGTT+TGG - tig0028755:16430-16449 None:intergenic 45.0%
GATGTAGTTGCTGACCGAAA+TGG + tig0028755:16994-17013 Msa1439400:intron 45.0%
TAGTTGCTGACCGAAATGGA+TGG + tig0028755:16998-17017 Msa1439400:intron 45.0%
TACTTTCCTCGAGAAACGAC+CGG - tig0028755:17101-17120 None:intergenic 45.0%
TTTCTCCTTCCTTCTTCGTC+AGG - tig0028755:17136-17155 None:intergenic 45.0%
GCATTTGAGAGGAGTTCCTT+TGG + tig0028755:17168-17187 Msa1439400:CDS 45.0%
TTTGAGAGGAGTTCCTTTGG+AGG + tig0028755:17171-17190 Msa1439400:CDS 45.0%
ATGTTAGCATCCTCCTCCAA+AGG - tig0028755:17187-17206 None:intergenic 45.0%
TACGAGACCATCAGTAACTG+TGG - tig0028755:17227-17246 None:intergenic 45.0%
ACAGTTACTGATGGTCTCGT+AGG + tig0028755:17226-17245 Msa1439400:intron 45.0%
GTCACATAAGCACTTAGGCA+TGG - tig0028755:17923-17942 None:intergenic 45.0%
CTTCCACGTTCACTCTTAGT+TGG + tig0028755:17963-17982 Msa1439400:intron 45.0%
CTACCTGCAGAGTGCAAATA+TGG - tig0028755:18118-18137 None:intergenic 45.0%
AGGTAGTGAAACTGTGGCAA+GGG + tig0028755:18132-18151 Msa1439400:intron 45.0%
CCATCAATGATGGCATCCAA+GGG - tig0028755:18252-18271 None:intergenic 45.0%
CCTTGGATGCCATCATTGAT+GGG + tig0028755:18250-18269 Msa1439400:CDS 45.0%
GATTATGGTAAAGGGGGGAG+TGG + tig0028755:13441-13460 Msa1439400:CDS 50.0%
GTAAAGGGGGGAGTGGTAAT+AGG + tig0028755:13448-13467 Msa1439400:CDS 50.0%
GGCTCCTCAATCTGTGTTAG+CGG + tig0028755:14036-14055 Msa1439400:CDS 50.0%
ATCGCCGCTAACACAGATTG+AGG - tig0028755:14043-14062 None:intergenic 50.0%
AATCTGTGTTAGCGGCGATG+AGG + tig0028755:14044-14063 Msa1439400:CDS 50.0%
CTGCTAGTCCAGCTAAGAAG+CGG + tig0028755:14143-14162 Msa1439400:CDS 50.0%
CACTTGGCTGTGTTTCCCAT+TGG - tig0028755:15168-15187 None:intergenic 50.0%
CAATGGGAAACACAGCCAAG+TGG + tig0028755:15166-15185 Msa1439400:intron 50.0%
GATGGGCAAAACACTCCAAG+AGG - tig0028755:15208-15227 None:intergenic 50.0%
TGAGCACCCCTATATAGGTG+AGG - tig0028755:15302-15321 None:intergenic 50.0%
!! GTAGCTTTGCCCCTACCTTT+TGG - tig0028755:16155-16174 None:intergenic 50.0%
!! CCTAGAGGAGTGTTGCTTGT+CGG + tig0028755:16174-16193 Msa1439400:CDS 50.0%
AATGTCTTGCCAGTTCCTGG+AGG - tig0028755:16201-16220 None:intergenic 50.0%
GATGAACTTGATGCGGTTGG+TGG + tig0028755:16371-16390 Msa1439400:CDS 50.0%
ACTTTCCTCGAGAAACGACC+GGG - tig0028755:17100-17119 None:intergenic 50.0%
TCTTCGAGCAGCAAGCAAAG+CGG - tig0028755:17281-17300 None:intergenic 50.0%
CTATGGCACAAGCAGTTGTG+AGG + tig0028755:17705-17724 Msa1439400:intron 50.0%
TGGCCAACTAAGAGTGAACG+TGG - tig0028755:17969-17988 None:intergenic 50.0%
CTCTGCAGGTAGTGAAACTG+TGG + tig0028755:18126-18145 Msa1439400:intron 50.0%
CAGGTAGTGAAACTGTGGCA+AGG + tig0028755:18131-18150 Msa1439400:intron 50.0%
AGCTTGGTAAGCTGTTCCCT+TGG + tig0028755:18233-18252 Msa1439400:CDS 50.0%
CCCTTGGATGCCATCATTGA+TGG + tig0028755:18249-18268 Msa1439400:CDS 50.0%
CCCATCAATGATGGCATCCA+AGG - tig0028755:18253-18272 None:intergenic 50.0%
TTTCGTTGAGATTGCGGCCG+AGG + tig0028755:13484-13503 Msa1439400:CDS 55.0%
TGAGATTGCGGCCGAGGTTA+CGG + tig0028755:13490-13509 Msa1439400:CDS 55.0%
GACGAGGTTCGATTCCTGAG+TGG + tig0028755:13933-13952 Msa1439400:CDS 55.0%
CTCGTGGAATACTGCCACTC+AGG - tig0028755:13950-13969 None:intergenic 55.0%
TCGGCCAAGCAACAACCCAA+TGG + tig0028755:15149-15168 Msa1439400:intron 55.0%
CGGCCAAGCAACAACCCAAT+GGG + tig0028755:15150-15169 Msa1439400:intron 55.0%
CAAGAGGCCAGCCTTAAGGT+GGG - tig0028755:15192-15211 None:intergenic 55.0%
ACTCCAAGAGGCCAGCCTTA+AGG - tig0028755:15196-15215 None:intergenic 55.0%
GTTACGGTGGCAGGACAGAT+GGG - tig0028755:15225-15244 None:intergenic 55.0%
AGTTACGGTGGCAGGACAGA+TGG - tig0028755:15226-15245 None:intergenic 55.0%
GTAGGGGCAAAGCTACCTAG+AGG + tig0028755:16159-16178 Msa1439400:CDS 55.0%
CCGACAAGCAACACTCCTCT+AGG - tig0028755:16177-16196 None:intergenic 55.0%
ACGTGCAATAGCAGGGAAGC+AGG + tig0028755:16227-16246 Msa1439400:CDS 55.0%
ACGGGACCAAACGCTCAATC+AGG + tig0028755:16421-16440 Msa1439400:CDS 55.0%
AACTAACCGGCCAGAAGCCT+TGG + tig0028755:17057-17076 Msa1439400:CDS 55.0%
GTAGGGGAACCTGACGAAGA+AGG + tig0028755:17124-17143 Msa1439400:CDS 55.0%
GGGAACCTGACGAAGAAGGA+AGG + tig0028755:17128-17147 Msa1439400:CDS 55.0%
! GAGAGGAGTTCCTTTGGAGG+AGG + tig0028755:17174-17193 Msa1439400:CDS 55.0%
! GCTTTGCTTGCTGCTCGAAG+AGG + tig0028755:17280-17299 Msa1439400:CDS 55.0%
GGTGTCTGTAGGGAGGCTAA+TGG - tig0028755:17989-18008 None:intergenic 55.0%
!! AAGCAGCAGGGGTGTCTGTA+GGG - tig0028755:17999-18018 None:intergenic 55.0%
GCGGCCGAGGTTACGGTTAT+TGG + tig0028755:13497-13516 Msa1439400:CDS 60.0%
CAGCCAAGTGGCCCACCTTA+AGG + tig0028755:15178-15197 Msa1439400:intron 60.0%
CAGCCTTAAGGTGGGCCACT+TGG - tig0028755:15184-15203 None:intergenic 60.0%
CAAGTGGCCCACCTTAAGGC+TGG + tig0028755:15182-15201 Msa1439400:intron 60.0%
CCAAGAGGCCAGCCTTAAGG+TGG - tig0028755:15193-15212 None:intergenic 60.0%
!! CCACCTTAAGGCTGGCCTCT+TGG + tig0028755:15190-15209 Msa1439400:intron 60.0%
!! GTGTTGCTTGTCGGTCCTCC+AGG + tig0028755:16183-16202 Msa1439400:CDS 60.0%
CTTGTCGGTCCTCCAGGAAC+TGG + tig0028755:16189-16208 Msa1439400:CDS 60.0%
CTGGATCCAAGGCTTCTGGC+CGG - tig0028755:17066-17085 None:intergenic 60.0%
AGGGCTGGATCCAAGGCTTC+TGG - tig0028755:17070-17089 None:intergenic 60.0%
ACGACACAGGGCTGGATCCA+AGG - tig0028755:17077-17096 None:intergenic 60.0%
GAAACGACCGGGACGACACA+GGG - tig0028755:17089-17108 None:intergenic 60.0%
AGAAACGACCGGGACGACAC+AGG - tig0028755:17090-17109 None:intergenic 60.0%
!! GAAGCAGCAGGGGTGTCTGT+AGG - tig0028755:18000-18019 None:intergenic 60.0%
AAGGCAGAGGGAAGCAGCAG+GGG - tig0028755:18010-18029 None:intergenic 60.0%
GAAGGCAGAGGGAAGCAGCA+GGG - tig0028755:18011-18030 None:intergenic 60.0%
TGAAGGCAGAGGGAAGCAGC+AGG - tig0028755:18012-18031 None:intergenic 60.0%
!! GATGCGGTTGGTGGCAAGCG+TGG + tig0028755:16380-16399 Msa1439400:CDS 65.0%
GATCCAGCCCTGTGTCGTCC+CGG + tig0028755:17079-17098 Msa1439400:CDS 65.0%
GTCGTCCCGGTCGTTTCTCG+AGG + tig0028755:17092-17111 Msa1439400:CDS 65.0%
!! CAGCAGGGGTGTCTGTAGGG+AGG - tig0028755:17996-18015 None:intergenic 65.0%
CGACCGGGACGACACAGGGC+TGG - tig0028755:17085-17104 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0028755 gene 13168 18552 13168 ID=Msa1439400;Name=Msa1439400
tig0028755 mRNA 13168 18552 13168 ID=Msa1439400-mRNA-1;Parent=Msa1439400;Name=Msa1439400-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.22|0.1|1|0.22|0.1|10|216|573
tig0028755 exon 13168 13331 13168 ID=Msa1439400-mRNA-1:exon:11752;Parent=Msa1439400-mRNA-1
tig0028755 exon 13368 13596 13368 ID=Msa1439400-mRNA-1:exon:11753;Parent=Msa1439400-mRNA-1
tig0028755 exon 13653 13772 13653 ID=Msa1439400-mRNA-1:exon:11754;Parent=Msa1439400-mRNA-1
tig0028755 exon 13800 13957 13800 ID=Msa1439400-mRNA-1:exon:11755;Parent=Msa1439400-mRNA-1
tig0028755 exon 14003 14237 14003 ID=Msa1439400-mRNA-1:exon:11756;Parent=Msa1439400-mRNA-1
tig0028755 exon 16120 16265 16120 ID=Msa1439400-mRNA-1:exon:11757;Parent=Msa1439400-mRNA-1
tig0028755 exon 16277 16451 16277 ID=Msa1439400-mRNA-1:exon:11758;Parent=Msa1439400-mRNA-1
tig0028755 exon 17001 17238 17001 ID=Msa1439400-mRNA-1:exon:11759;Parent=Msa1439400-mRNA-1
tig0028755 exon 17248 17301 17248 ID=Msa1439400-mRNA-1:exon:11760;Parent=Msa1439400-mRNA-1
tig0028755 exon 18134 18552 18134 ID=Msa1439400-mRNA-1:exon:11761;Parent=Msa1439400-mRNA-1
tig0028755 CDS 13168 13331 13168 ID=Msa1439400-mRNA-1:cds;Parent=Msa1439400-mRNA-1
tig0028755 CDS 13368 13596 13368 ID=Msa1439400-mRNA-1:cds;Parent=Msa1439400-mRNA-1
tig0028755 CDS 13653 13772 13653 ID=Msa1439400-mRNA-1:cds;Parent=Msa1439400-mRNA-1
tig0028755 CDS 13800 13957 13800 ID=Msa1439400-mRNA-1:cds;Parent=Msa1439400-mRNA-1
tig0028755 CDS 14003 14237 14003 ID=Msa1439400-mRNA-1:cds;Parent=Msa1439400-mRNA-1
tig0028755 CDS 16120 16265 16120 ID=Msa1439400-mRNA-1:cds;Parent=Msa1439400-mRNA-1
tig0028755 CDS 16277 16451 16277 ID=Msa1439400-mRNA-1:cds;Parent=Msa1439400-mRNA-1
tig0028755 CDS 17001 17238 17001 ID=Msa1439400-mRNA-1:cds;Parent=Msa1439400-mRNA-1
tig0028755 CDS 17248 17301 17248 ID=Msa1439400-mRNA-1:cds;Parent=Msa1439400-mRNA-1
tig0028755 CDS 18134 18336 18134 ID=Msa1439400-mRNA-1:cds;Parent=Msa1439400-mRNA-1
tig0028755 three_prime_UTR 18337 18552 18337 ID=Msa1439400-mRNA-1:three_prime_utr;Parent=Msa1439400-mRNA-1
Gene Sequence

>Msa1439400

ATGGTTTGTTTTTCTTTACCTTGTTGTACTGGGTCATTTTCGACACCAAATAGGTTAAAAATTAGGAATTTTAGGGTTTATAGAGGTTTATGCACTTCAATGAAGTTTAAGTTTAATCAATGCTATAATTTTGAAAATGGGTTTTTATGGAATAAGAAATTTGAGTTTCAACAAAATGGTGTTGGTAATGAAACTGAGCCACTTGTTAGTAGTAGAAGTAGGGATGATAAGAAGAATGATTATGGTAAAGGGGGGAGTGGTAATAGGTTGAAGAAGAGATTTTCGTTGAGATTGCGGCCGAGGTTACGGTTATTGGTTATGAGGATGAAAAGGGCTTCTCTTGAATCTGTTTTGAATGAGGTTGGAGTGTTTGTTAGGAAAAATATTAGGACGTTTACTTCACTTCGGCCAGTGAAAATTGTTCCGTATTCGGACTTGATTGCGAGTCTTCGAAATGGGAATGTGGAGAAAGTTTTAGTTGAAGAGGGGTCTCGGCGTATATATTATAATACGGTTTCTGATGAAGAAGAATCACAACAAGTAGTAGATGTTTCGATGGATAAGGATATAGACAAGGTTGTGAGTGAGAATGCTGTAAGATCTGGTGGAATTCCTGCATTGAATAAATTGAAGAAATTCTCTAAGAGACGAGGTTCGATTCCTGAGTGGCATTTGATGAGGGAAAAGGGGGTTACATTTAGCTCGGCTCCTCAATCTGTGTTAGCGGCGATGAGGAGTACTTTGATAACTGTGATCACACTGTGGATACCTTTGATTCCTTTGATGTGGCTTATATATCGTCAACTTTCTGCTGCTAGTCCAGCTAAGAAGCGGAAACCTAATAGTCAGACAGTTGGATTTGAAGATGTTCAAGGTGTTGATTCTGCAAAAGTAGAGCTCATGGAGATAGTTTCATGTCTGCAAGGGGATCTTAATTACCAAAAGGTAGGGGCAAAGCTACCTAGAGGAGTGTTGCTTGTCGGTCCTCCAGGAACTGGCAAGACATTACTTGCACGTGCAATAGCAGGGAAGCAGGTGTACCCTTTTTCACATGAGTTCGTTGAAATGTTTGTTGGAAGAGGTGCTGCTAGAGTCAGAGACCTTTTTAGTACAGCAAGGAAATTTGCACCATCAATCATATTCATTGATGAACTTGATGCGGTTGGTGGCAAGCGTGGAAGAAGCTTCAATGATGAACGGGACCAAACGCTCAATCAGGCAAGTTTATTGCTGACCGAAATGGATGGATTTGAATCAGAAATGAGAGTGGTTGTCATTGCAGCAACTAACCGGCCAGAAGCCTTGGATCCAGCCCTGTGTCGTCCCGGTCGTTTCTCGAGGAAAGTATTTGTAGGGGAACCTGACGAAGAAGGAAGGAGAAAGATATTAGCTGTGCATTTGAGAGGAGTTCCTTTGGAGGAGGATGCTAACATCATATGTCATTTAATTGCCACAGTTACTGATGGTGCTGATCTTGCAAACATCGTCAATGAATCCGCTTTGCTTGCTGCTCGAAGAGGTAGTGAAACTGTGGCAAGGGAAGATATAATGGAAGCTATTGAAAGAGCAAAGTTTGGAATCAATGATAAGCAACTAAGGTCTAGTAAAATAAGCAAGGAGCTTGGTAAGCTGTTCCCTTGGATGCCATCATTGATGGGAAGAAGTGATAGGAAACAAGATGACATACAAGGACCATTAGGTTATCAATCATTGAATTCATGA
Protein sequence

>Msa1439400

MVCFSLPCCTGSFSTPNRLKIRNFRVYRGLCTSMKFKFNQCYNFENGFLWNKKFEFQQNGVGNETEPLVSSRSRDDKKNDYGKGGSGNRLKKRFSLRLRPRLRLLVMRMKRASLESVLNEVGVFVRKNIRTFTSLRPVKIVPYSDLIASLRNGNVEKVLVEEGSRRIYYNTVSDEEESQQVVDVSMDKDIDKVVSENAVRSGGIPALNKLKKFSKRRGSIPEWHLMREKGVTFSSAPQSVLAAMRSTLITVITLWIPLIPLMWLIYRQLSAASPAKKRKPNSQTVGFEDVQGVDSAKVELMEIVSCLQGDLNYQKVGAKLPRGVLLVGPPGTGKTLLARAIAGKQVYPFSHEFVEMFVGRGAARVRDLFSTARKFAPSIIFIDELDAVGGKRGRSFNDERDQTLNQASLLLTEMDGFESEMRVVVIAATNRPEALDPALCRPGRFSRKVFVGEPDEEGRRKILAVHLRGVPLEEDANIICHLIATVTDGADLANIVNESALLAARRGSETVAREDIMEAIERAKFGINDKQLRSSKISKELGKLFPWMPSLMGRSDRKQDDIQGPLGYQSLNS*