AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0940550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0940550 MtrunA17_Chr6g0456351 91.311 633 30 3 1 632 1 609 0.0 1136
Msa0940550 MtrunA17_Chr7g0217421 54.676 278 120 3 321 595 21 295 4.10e-89 282
Msa0940550 MtrunA17_Chr7g0260601 47.557 307 146 2 307 598 196 502 7.46e-86 283
Msa0940550 MtrunA17_Chr3g0143721 55.185 270 113 3 340 606 249 513 7.89e-86 283
Msa0940550 MtrunA17_Chr4g0052411 47.230 343 158 6 277 600 151 489 1.48e-85 281
Msa0940550 MtrunA17_Chr5g0429571 57.565 271 107 3 325 589 298 566 3.21e-85 283
Msa0940550 MtrunA17_Chr2g0297281 51.020 294 137 4 332 622 279 568 5.46e-84 279
Msa0940550 MtrunA17_Chr3g0104211 57.752 258 101 3 338 589 302 557 1.64e-82 276
Msa0940550 MtrunA17_Chr6g0476861 50.186 269 130 1 331 595 188 456 1.97e-79 265
Msa0940550 MtrunA17_Chr7g0248361 52.290 262 117 2 340 595 192 451 6.44e-79 263
Msa0940550 MtrunA17_Chr3g0135721 52.190 274 125 3 334 606 217 485 2.57e-78 263
Msa0940550 MtrunA17_Chr4g0031821 49.630 270 132 1 324 589 304 573 5.12e-78 264
Msa0940550 MtrunA17_Chr8g0362771 49.827 289 132 5 316 599 212 492 1.74e-76 258
Msa0940550 MtrunA17_Chr3g0094871 47.876 259 132 1 338 593 9 267 2.13e-76 250
Msa0940550 MtrunA17_Chr3g0135761 52.672 262 119 2 342 603 224 480 2.18e-75 254
Msa0940550 MtrunA17_Chr2g0331161 50.965 259 122 2 340 595 415 671 3.53e-74 255
Msa0940550 MtrunA17_Chr1g0158881 49.630 270 133 2 331 600 320 586 1.78e-71 246
Msa0940550 MtrunA17_Chr3g0129971 48.881 268 130 3 340 600 296 563 1.99e-69 241
Msa0940550 MtrunA17_Chr5g0432631 50.936 267 125 4 334 599 222 483 5.29e-69 240
Msa0940550 MtrunA17_Chr5g0432641 50.000 258 127 2 342 599 193 448 2.26e-66 229
Msa0940550 MtrunA17_Chr8g0388371 42.857 280 146 3 318 585 381 658 2.12e-63 225
Msa0940550 MtrunA17_Chr3g0135781 53.804 184 84 1 316 498 30 213 6.97e-57 191
Msa0940550 MtrunA17_Chr1g0192151 43.265 245 133 3 339 579 166 408 2.27e-53 188
Msa0940550 MtrunA17_Chr4g0014731 43.265 245 133 3 339 579 167 409 2.63e-53 188
Msa0940550 MtrunA17_Chr7g0264521 41.129 248 142 3 329 574 194 439 2.43e-51 190
Msa0940550 MtrunA17_Chr7g0264521 35.640 289 164 6 324 603 461 736 5.57e-47 177
Msa0940550 MtrunA17_Chr3g0145011 40.486 247 141 3 339 581 138 382 2.59e-51 182
Msa0940550 MtrunA17_Chr2g0327121 42.797 236 132 2 340 574 207 440 2.98e-51 189
Msa0940550 MtrunA17_Chr2g0327121 37.363 273 149 6 320 583 458 717 2.54e-46 175
Msa0940550 MtrunA17_Chr1g0180791 42.373 236 133 2 340 574 205 438 4.41e-51 189
Msa0940550 MtrunA17_Chr1g0180791 38.662 269 143 6 324 583 460 715 7.80e-48 180
Msa0940550 MtrunA17_Chr3g0141901 42.857 217 119 2 368 581 165 379 5.02e-51 181
Msa0940550 MtrunA17_Chr1g0168321 40.840 262 110 3 340 595 164 386 3.07e-48 176
Msa0940550 MtrunA17_Chr4g0050561 37.313 268 149 4 342 598 158 417 7.54e-48 173
Msa0940550 MtrunA17_Chr8g0345461 39.200 250 146 3 340 585 165 412 1.18e-47 173
Msa0940550 MtrunA17_Chr7g0255721 42.035 226 126 3 340 562 685 908 2.06e-47 179
Msa0940550 MtrunA17_Chr7g0255721 38.288 222 135 2 347 568 393 612 3.80e-33 136
Msa0940550 MtrunA17_Chr2g0277831 45.852 229 116 4 342 565 245 470 3.05e-47 178
Msa0940550 MtrunA17_Chr2g0277831 40.000 225 134 1 339 562 532 756 6.11e-41 159
Msa0940550 MtrunA17_Chr7g0262801 40.486 247 141 3 342 584 189 433 1.23e-46 171
Msa0940550 MtrunA17_Chr1g0182711 40.081 247 142 3 342 584 190 434 3.02e-46 169
Msa0940550 MtrunA17_Chr1g0200081 35.065 308 180 7 285 585 127 421 1.39e-45 167
Msa0940550 MtrunA17_Chr7g0255651 40.316 253 145 3 318 566 260 510 2.13e-44 167
Msa0940550 MtrunA17_Chr7g0255651 35.545 211 119 6 374 575 48 250 1.71e-20 95.9
Msa0940550 MtrunA17_Chr8g0357301 38.136 236 133 4 355 581 485 716 4.29e-43 166
Msa0940550 MtrunA17_Chr7g0255641 37.751 249 148 4 340 583 658 904 4.65e-43 166
Msa0940550 MtrunA17_Chr7g0255641 35.268 224 130 6 378 592 432 649 1.91e-28 121
Msa0940550 MtrunA17_Chr3g0108321 42.929 198 106 3 330 523 152 346 2.42e-41 154
Msa0940550 MtrunA17_Chr7g0255691 41.921 229 127 3 340 564 286 512 1.65e-40 155
Msa0940550 MtrunA17_Chr7g0255691 38.235 204 115 4 369 565 47 246 8.01e-27 115
Msa0940550 MtrunA17_Chr7g0255901 38.235 238 136 7 335 565 634 867 7.56e-38 150
Msa0940550 MtrunA17_Chr3g0086401 36.552 290 146 7 310 565 38 323 4.51e-37 147
Msa0940550 MtrunA17_Chr3g0086401 36.214 243 135 4 340 563 385 626 6.94e-33 134
Msa0940550 MtrunA17_Chr6g0459561 36.458 288 157 11 333 606 378 653 5.82e-37 146
Msa0940550 MtrunA17_Chr4g0026631 38.017 242 140 7 332 570 122 356 6.24e-37 143
Msa0940550 MtrunA17_Chr1g0202371 40.756 238 112 8 336 559 393 615 2.01e-36 145
Msa0940550 MtrunA17_Chr1g0190401 42.391 184 102 2 340 519 677 860 2.22e-36 146
Msa0940550 MtrunA17_Chr8g0387641 36.742 264 147 6 336 595 517 764 4.79e-36 144
Msa0940550 MtrunA17_Chr2g0321241 36.735 245 139 8 332 570 127 361 7.98e-36 140
Msa0940550 MtrunA17_Chr6g0462581 39.914 233 131 5 336 564 496 723 1.18e-35 143
Msa0940550 MtrunA17_Chr2g0316851 37.069 232 137 4 341 565 595 824 1.80e-35 144
Msa0940550 MtrunA17_Chr4g0043381 34.553 246 145 4 341 583 838 1070 1.86e-35 143
Msa0940550 MtrunA17_Chr3g0086411 34.470 264 156 3 340 586 215 478 3.38e-35 139
Msa0940550 MtrunA17_Chr3g0086411 45.205 146 73 1 427 565 7 152 1.80e-25 110
Msa0940550 MtrunA17_Chr3g0127431 37.607 234 138 4 335 564 79 308 4.25e-35 137
Msa0940550 MtrunA17_Chr5g0397121 39.056 233 134 5 336 564 509 737 8.85e-35 140
Msa0940550 MtrunA17_Chr2g0327231 41.436 181 97 4 321 495 328 505 2.27e-34 137
Msa0940550 MtrunA17_Chr2g0327231 37.079 89 53 1 340 428 153 238 4.91e-12 68.9
Msa0940550 MtrunA17_Chr1g0202381 39.407 236 119 8 336 559 464 687 3.55e-34 139
Msa0940550 MtrunA17_Chr3g0116131 39.130 230 131 6 335 559 897 1122 7.84e-34 138
Msa0940550 MtrunA17_Chr4g0004121 37.349 249 141 6 337 575 239 482 9.17e-34 135
Msa0940550 MtrunA17_Chr1g0204031 38.462 234 134 6 336 564 553 781 2.14e-33 136
Msa0940550 MtrunA17_Chr3g0127401 37.179 234 139 4 335 564 76 305 2.55e-33 131
Msa0940550 MtrunA17_Chr5g0432391 44.048 168 92 1 414 581 78 243 3.49e-33 132
Msa0940550 MtrunA17_Chr1g0195741 37.712 236 138 5 335 565 933 1164 4.37e-33 136
Msa0940550 MtrunA17_Chr1g0195731 37.295 244 144 6 335 573 929 1168 5.55e-33 135
Msa0940550 MtrunA17_Chr4g0052271 36.187 257 148 9 337 585 116 364 8.94e-33 130
Msa0940550 MtrunA17_Chr4g0038101 36.522 230 137 5 335 559 716 941 4.27e-32 132
Msa0940550 MtrunA17_Chr4g0033451 36.066 244 147 4 338 574 378 619 3.13e-31 130
Msa0940550 MtrunA17_Chr7g0246111 35.931 231 141 5 337 564 209 435 2.77e-30 125
Msa0940550 MtrunA17_Chr6g0459541 30.968 310 169 10 333 606 38 338 1.68e-29 120
Msa0940550 MtrunA17_Chr2g0289231 35.455 220 124 5 369 584 335 540 7.04e-28 118
Msa0940550 MtrunA17_Chr4g0047411 36.726 226 123 6 370 580 207 427 2.60e-27 117
Msa0940550 MtrunA17_Chr6g0459551 30.065 306 166 9 340 606 102 398 1.41e-25 110
Msa0940550 MtrunA17_Chr6g0459531 28.058 278 156 9 340 606 67 311 1.35e-15 78.2
Msa0940550 MtrunA17_Chr5g0404651 35.404 161 87 6 368 520 243 394 5.37e-13 71.6
Msa0940550 MtrunA17_Chr4g0062081 42.857 77 42 2 344 418 11 87 7.48e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0940550 AT3G02450.1 68.039 510 145 5 123 631 130 622 0.0 694
Msa0940550 AT5G58870.1 57.795 263 103 3 336 592 322 582 2.12e-85 284
Msa0940550 AT5G15250.1 55.472 265 112 3 334 595 216 477 2.86e-85 281
Msa0940550 AT1G50250.1 56.439 264 110 2 340 600 259 520 3.59e-85 281
Msa0940550 AT2G30950.1 54.815 270 115 4 334 600 219 484 8.43e-85 280
Msa0940550 AT2G30950.2 54.815 270 115 4 334 600 219 484 8.43e-85 280
Msa0940550 AT2G30950.3 54.815 270 115 4 334 600 219 484 8.43e-85 280
Msa0940550 AT2G30950.4 54.815 270 115 4 334 600 223 488 8.90e-85 280
Msa0940550 AT1G06430.1 50.495 303 143 4 323 622 201 499 1.14e-84 280
Msa0940550 AT1G06430.3 50.495 303 143 4 323 622 201 499 1.14e-84 280
Msa0940550 AT1G06430.2 50.495 303 143 4 323 622 201 499 1.14e-84 280
Msa0940550 AT3G47060.1 58.238 261 101 3 338 592 320 578 1.36e-84 282
Msa0940550 AT5G42270.1 55.682 264 112 2 340 600 247 508 2.33e-84 279
Msa0940550 AT5G15250.2 51.042 288 112 4 334 595 216 500 1.81e-82 269
Msa0940550 AT2G26140.1 55.344 262 112 2 342 603 226 482 1.55e-79 266
Msa0940550 AT1G07510.1 48.746 279 139 1 324 598 308 586 2.48e-79 268
Msa0940550 AT2G29080.1 48.561 278 140 1 324 598 303 580 2.57e-77 263
Msa0940550 AT5G53170.1 51.111 270 129 2 331 600 350 616 2.63e-75 257
Msa0940550 AT3G16290.1 51.362 257 120 2 340 593 407 661 2.49e-74 256
Msa0940550 AT5G64580.1 42.151 344 166 8 288 600 239 580 3.27e-69 241
Msa0940550 AT4G23940.1 42.761 297 149 4 318 602 404 691 5.68e-64 228
Msa0940550 AT3G05530.1 43.265 245 133 3 339 579 167 409 1.95e-53 189
Msa0940550 AT5G43010.1 42.437 238 130 3 368 602 165 398 4.75e-52 184
Msa0940550 AT1G09100.1 42.857 245 134 3 339 579 166 408 6.27e-52 185
Msa0940550 AT1G45000.1 42.437 238 130 3 368 602 165 398 7.92e-52 184
Msa0940550 AT3G09840.1 41.949 236 134 2 340 574 204 437 1.16e-50 188
Msa0940550 AT3G09840.1 38.554 249 138 4 340 583 477 715 3.72e-42 163
Msa0940550 AT5G03340.1 41.949 236 134 2 340 574 204 437 1.42e-50 188
Msa0940550 AT5G03340.1 40.343 233 133 3 340 568 477 707 9.72e-46 174
Msa0940550 AT3G53230.1 41.102 236 136 2 340 574 205 438 5.46e-50 186
Msa0940550 AT3G53230.1 41.202 233 131 3 340 568 478 708 2.79e-47 178
Msa0940550 AT3G56690.1 44.053 227 120 4 340 562 721 944 9.19e-50 187
Msa0940550 AT3G56690.1 40.000 195 116 1 371 565 413 606 1.05e-36 147
Msa0940550 AT1G53750.1 39.200 250 146 3 340 585 165 412 2.01e-47 172
Msa0940550 AT4G29040.1 40.891 247 140 3 342 584 187 431 4.70e-47 172
Msa0940550 AT5G19990.2 36.940 268 150 4 342 598 102 361 6.91e-47 169
Msa0940550 AT5G19990.1 36.940 268 150 4 342 598 160 419 1.59e-46 170
Msa0940550 AT5G19990.3 36.940 268 150 4 342 598 160 419 1.59e-46 170
Msa0940550 AT2G20140.1 41.296 247 139 4 342 584 187 431 2.03e-46 170
Msa0940550 AT5G20000.1 36.940 268 150 4 342 598 160 419 3.06e-46 169
Msa0940550 AT5G58290.1 37.751 249 146 4 330 574 145 388 1.31e-43 161
Msa0940550 AT1G53780.3 33.987 306 187 6 285 585 288 583 1.56e-43 165
Msa0940550 AT1G53780.1 33.987 306 187 6 285 585 289 584 1.61e-43 165
Msa0940550 AT1G53780.4 33.987 306 187 6 285 585 289 584 1.61e-43 165
Msa0940550 AT1G53780.2 33.987 306 187 6 285 585 310 605 2.32e-43 165
Msa0940550 AT1G79560.3 37.288 236 135 4 355 581 505 736 1.65e-42 165
Msa0940550 AT1G79560.2 37.288 236 135 4 355 581 505 736 1.89e-42 165
Msa0940550 AT1G79560.1 37.288 236 135 4 355 581 505 736 1.89e-42 165
Msa0940550 AT3G01610.1 40.647 278 144 6 342 607 232 500 3.09e-42 164
Msa0940550 AT3G01610.1 36.515 241 148 4 340 577 525 763 7.37e-32 132
Msa0940550 AT3G01610.2 40.647 278 144 6 342 607 232 500 3.43e-42 164
Msa0940550 AT3G01610.2 36.515 241 148 4 340 577 525 763 7.57e-32 132
Msa0940550 AT2G03670.1 41.739 230 127 3 340 564 283 510 2.58e-39 153
Msa0940550 AT2G03670.1 39.906 213 116 5 366 570 46 254 1.59e-31 130
Msa0940550 AT5G08470.3 38.075 239 136 4 340 574 832 1062 7.33e-37 148
Msa0940550 AT5G08470.1 38.075 239 136 4 340 574 841 1071 8.60e-37 148
Msa0940550 AT5G52882.1 38.735 253 140 7 336 583 510 752 1.37e-36 147
Msa0940550 AT1G03000.1 36.287 237 142 6 335 565 650 883 1.43e-36 147
Msa0940550 AT4G28000.3 40.343 233 130 5 336 564 513 740 2.92e-36 145
Msa0940550 AT4G28000.1 40.343 233 130 5 336 564 511 738 3.32e-36 145
Msa0940550 AT4G28000.2 40.343 233 130 5 336 564 513 740 3.62e-36 145
Msa0940550 AT3G04340.1 42.935 184 101 2 340 519 781 964 5.48e-36 145
Msa0940550 AT1G64110.1 39.301 229 131 5 340 564 513 737 4.33e-35 142
Msa0940550 AT1G64110.5 39.301 229 131 5 340 564 516 740 4.47e-35 142
Msa0940550 AT1G64110.3 39.301 229 131 5 340 564 516 740 4.47e-35 142
Msa0940550 AT1G64110.2 39.301 229 131 5 340 564 518 742 4.49e-35 142
Msa0940550 AT1G64110.4 39.301 229 131 5 340 564 518 742 4.49e-35 142
Msa0940550 AT1G02890.1 38.189 254 147 7 335 582 936 1185 7.43e-35 142
Msa0940550 AT3G27120.1 35.417 288 160 11 333 606 396 671 1.71e-34 139
Msa0940550 AT3G15120.2 37.438 203 121 2 368 565 755 956 4.32e-34 140
Msa0940550 AT3G15120.1 37.438 203 121 2 368 565 745 946 4.52e-34 140
Msa0940550 AT4G02480.1 38.136 236 137 6 335 565 955 1186 1.25e-33 138
Msa0940550 AT2G27600.1 35.918 245 141 8 332 570 124 358 1.28e-33 134
Msa0940550 AT2G45500.4 35.776 232 140 6 337 564 77 303 1.62e-33 132
Msa0940550 AT2G45500.3 35.776 232 140 6 337 564 77 303 1.62e-33 132
Msa0940550 AT1G80350.1 37.398 246 139 6 340 575 236 476 2.74e-33 134
Msa0940550 AT2G34560.1 34.661 251 155 5 340 585 100 346 8.46e-33 130
Msa0940550 AT2G34560.2 34.661 251 155 5 340 585 109 355 1.01e-32 130
Msa0940550 AT2G45500.2 35.776 232 140 6 337 564 210 436 1.21e-32 132
Msa0940550 AT2G45500.1 35.776 232 140 6 337 564 214 440 1.27e-32 132
Msa0940550 AT2G45500.5 35.776 232 140 6 337 564 220 446 1.36e-32 132
Msa0940550 AT1G50140.2 35.798 257 152 6 335 586 684 932 2.14e-32 134
Msa0940550 AT1G50140.5 35.798 257 152 6 335 586 684 932 2.14e-32 134
Msa0940550 AT1G50140.3 35.798 257 152 6 335 586 706 954 2.22e-32 134
Msa0940550 AT1G50140.1 35.798 257 152 6 335 586 706 954 2.22e-32 134
Msa0940550 AT1G50140.4 35.798 257 152 6 335 586 706 954 2.22e-32 134
Msa0940550 AT2G03670.2 39.906 213 116 5 366 570 46 254 2.40e-32 130
Msa0940550 AT2G03670.2 41.429 140 77 2 340 474 283 422 4.43e-19 90.9
Msa0940550 AT4G24860.3 36.614 254 140 7 335 583 810 1047 6.49e-32 132
Msa0940550 AT4G24860.1 36.614 254 140 7 335 583 812 1049 6.79e-32 132
Msa0940550 AT3G19740.1 34.387 253 153 6 335 582 696 940 8.71e-32 132
Msa0940550 AT4G24860.2 38.261 230 133 6 335 559 808 1033 9.77e-32 132
Msa0940550 AT4G24860.4 38.261 230 133 6 335 559 785 1010 9.88e-32 132
Msa0940550 AT1G05910.1 35.458 251 153 4 337 580 375 623 3.59e-31 130
Msa0940550 AT5G53540.1 36.681 229 137 4 340 564 84 308 5.94e-31 125
Msa0940550 AT4G27680.1 35.043 234 144 4 335 564 76 305 4.88e-30 123
Msa0940550 AT4G04910.1 35.345 232 130 6 370 586 244 470 1.45e-26 115
Msa0940550 AT1G62130.1 35.178 253 133 8 335 583 745 970 1.91e-26 115
Msa0940550 AT1G62130.2 35.178 253 133 8 335 583 738 963 1.95e-26 115
Msa0940550 AT4G04180.2 32.889 225 134 5 340 554 311 528 6.31e-26 113
Msa0940550 AT1G45000.2 48.182 110 54 1 368 474 165 274 6.39e-26 109
Msa0940550 AT4G04180.1 32.889 225 134 5 340 554 316 533 6.64e-26 113
Msa0940550 AT5G08470.2 38.667 150 85 2 340 485 841 987 1.93e-21 100
Msa0940550 AT1G02890.2 32.677 254 133 8 335 582 936 1157 5.67e-21 98.6
Msa0940550 AT5G17740.1 26.829 246 146 5 368 599 237 462 1.57e-13 73.9
Msa0940550 AT5G17730.1 31.053 190 103 7 338 509 200 379 1.44e-12 70.9

Find 154 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCAACTGTCTGACTATT+AGG 0.199018 6_3:-13093752 None:intergenic
GCGGCCGAGGTTACGGTTAT+TGG 0.248138 6_3:+13093079 Msa0940550:CDS
ACTGGCAGATACTGTGAAAA+AGG 0.271192 6_3:-13095839 None:intergenic
TCATTGAGGTTTCAACAAAA+TGG 0.272591 6_3:+13092942 Msa0940550:CDS
AATAAGAAATTTGAGTATTA+TGG 0.276076 6_3:+13092900 Msa0940550:CDS
AAGCCGTTGTATTTGTTTAC+AGG 0.284997 6_3:+13098051 Msa0940550:three_prime_UTR
ATTTCCTTGCTGTACTAAAA+AGG 0.285721 6_3:-13095909 None:intergenic
CAATCATTGAATTCATGATT+TGG 0.317172 6_3:+13097901 Msa0940550:exon
GTAGCTTTGCCCCTACCTTT+TGG 0.317824 6_3:-13095735 None:intergenic
AGTGAAAATTGTTCCGTATT+CGG 0.326742 6_3:+13093253 Msa0940550:CDS
AGTAATGTCTTGCCAGTTCC+TGG 0.338717 6_3:-13095784 None:intergenic
GCTATTGAAAGAGCAAAGTT+TGG 0.356257 6_3:+13097751 Msa0940550:CDS
GATGATAAGAAGAATGATTA+TGG 0.359397 6_3:+13093008 Msa0940550:CDS
TGATTCAAATCCATCCATTT+CGG 0.359843 6_3:-13096589 None:intergenic
AACTTGCCTGATTGAGCGTT+TGG 0.362410 6_3:-13096011 None:intergenic
GCATTTGAGAGGAGTTCCTT+TGG 0.379597 6_3:+13096749 Msa0940550:CDS
TGTGGCAAGGGAAGATATAA+TGG 0.388759 6_3:+13097726 Msa0940550:CDS
TTTCTCCTTCCTTCTTCGTC+AGG 0.391335 6_3:-13096714 None:intergenic
CCCTTGGATGCCATCATTGA+TGG 0.392559 6_3:+13097831 Msa0940550:CDS
TGAGATTGCGGCCGAGGTTA+CGG 0.403962 6_3:+13093072 Msa0940550:CDS
AGAAGAATGATTATGGTAAA+GGG 0.405752 6_3:+13093015 Msa0940550:CDS
TTTCGTTGAGATTGCGGCCG+AGG 0.410912 6_3:+13093066 Msa0940550:CDS
TTAGGTTTCCGCTTCTTAGC+TGG 0.413254 6_3:-13093734 None:intergenic
AGGGCTGGATCCAAGGCTTC+TGG 0.417900 6_3:-13096648 None:intergenic
GTGGAATCTTGTGGTGGAAG+AGG 0.422399 6_3:-13092551 None:intergenic
GAAATGATTGAATGTGGAAA+TGG 0.423329 6_3:-13092605 None:intergenic
TTCAATGATTGATAACCTAA+TGG 0.427719 6_3:-13097889 None:intergenic
TTTCTTTACCTTGTTGTACT+GGG 0.428267 6_3:+13092760 Msa0940550:CDS
CTTGTCGGTCCTCCAGGAAC+TGG 0.431660 6_3:+13095772 Msa0940550:CDS
CTTAGTTTGATGAGGGAAAA+GGG 0.432422 6_3:+13093581 Msa0940550:CDS
ATGAGGTTGGAGTGTTTGTT+AGG 0.432614 6_3:+13093141 Msa0940550:CDS
GATGACATACAAGGACCATT+AGG 0.434995 6_3:+13097874 Msa0940550:CDS
CTCGCAATCAAGTCCGAATA+CGG 0.437861 6_3:-13093266 None:intergenic
AAGAAGAATGATTATGGTAA+AGG 0.444958 6_3:+13093014 Msa0940550:CDS
CGTGCAATAGCAGGGGAAGC+AGG 0.445110 6_3:+13095811 Msa0940550:CDS
TTCTTCAATTTATTCAATGC+AGG 0.445292 6_3:-13093482 None:intergenic
TATTGGTTATGAGGATGAAA+AGG 0.452735 6_3:+13093096 Msa0940550:CDS
GGTTACGGTTATTGGTTATG+AGG 0.454581 6_3:+13093087 Msa0940550:CDS
TCTTAGTTTGATGAGGGAAA+AGG 0.455840 6_3:+13093580 Msa0940550:CDS
TTGTCATTGCAGCAACTAAC+CGG 0.455886 6_3:+13096625 Msa0940550:CDS
TTGATTGCGAGTCTTCGAAA+TGG 0.464901 6_3:+13093278 Msa0940550:CDS
TCTCGAGGAAAGTATTTGTA+GGG 0.465124 6_3:+13096688 Msa0940550:CDS
GAGTTCGTTGAAATGTTTGT+TGG 0.467301 6_3:+13095862 Msa0940550:CDS
CCTAGAGGAGTGTTGCTTGT+CGG 0.467543 6_3:+13095757 Msa0940550:CDS
TTTCCCTCATCAAACTAAGA+AGG 0.468514 6_3:-13093577 None:intergenic
GTTGGATTTGAAGATGTTCA+AGG 0.468812 6_3:+13093767 Msa0940550:CDS
CCCATCAATGATGGCATCCA+AGG 0.469878 6_3:-13097832 None:intergenic
TGATTGCGAGTCTTCGAAAT+GGG 0.474413 6_3:+13093279 Msa0940550:CDS
CATTGATGGGAAGAAGTGAT+AGG 0.477672 6_3:+13097845 Msa0940550:CDS
TTCTCGAGGAAAGTATTTGT+AGG 0.479629 6_3:+13096687 Msa0940550:CDS
AACTAACCGGCCAGAAGCCT+TGG 0.480710 6_3:+13096638 Msa0940550:CDS
ATTGGTTATGAGGATGAAAA+GGG 0.482073 6_3:+13093097 Msa0940550:CDS
GTGTTGCTTGTCGGTCCTCC+AGG 0.483133 6_3:+13095766 Msa0940550:CDS
TTCAGAGAAATGATTGAATG+TGG 0.485505 6_3:-13092611 None:intergenic
AAGAAGCTTCAATGATGAAC+GGG 0.488699 6_3:+13095987 Msa0940550:CDS
AGTAGATGTTTCGATGGATA+AGG 0.488805 6_3:+13093412 Msa0940550:CDS
ACGGGACCAAACGCTCAATC+AGG 0.492720 6_3:+13096005 Msa0940550:CDS
TCATCAATGAATATGATTGA+TGG 0.492788 6_3:-13095937 None:intergenic
TGAGAATGTTGAAAATGATA+AGG 0.493218 6_3:+13093361 Msa0940550:CDS
TTACTTGCACGTGCAATAGC+AGG 0.494558 6_3:+13095802 Msa0940550:CDS
CGACCGGGACGACACAGGGC+TGG 0.495070 6_3:-13096663 None:intergenic
AGCTTGGTAAGCTGTTCCCT+TGG 0.496185 6_3:+13097815 Msa0940550:CDS
TACCTTTGATTCCTTTGATG+TGG 0.496607 6_3:+13093681 Msa0940550:CDS
ATTGTACAAGTAAATTTGAC+AGG 0.498751 6_3:-13097928 None:intergenic
CTCGTGGAATACTGCCACTC+AGG 0.503338 6_3:-13093530 None:intergenic
AATAAGTGTGAACAATGAAA+AGG 0.503440 6_3:-13097956 None:intergenic
ACGACACAGGGCTGGATCCA+AGG 0.506054 6_3:-13096655 None:intergenic
GTTGAAATGTTTGTTGGAAG+AGG 0.509876 6_3:+13095868 Msa0940550:CDS
GAGAGGAGTTCCTTTGGAGG+AGG 0.513124 6_3:+13096755 Msa0940550:CDS
GAATCAATGATAAGCAACTA+AGG 0.515226 6_3:+13097773 Msa0940550:CDS
GATGTAGTTGCTGACCGAAA+TGG 0.515352 6_3:+13096575 Msa0940550:intron
CCTTGGATGCCATCATTGAT+GGG 0.519963 6_3:+13097832 Msa0940550:CDS
AGAAACGACCGGGACGACAC+AGG 0.521094 6_3:-13096668 None:intergenic
ATCTTAATTACCAAAAGGTA+GGG 0.521468 6_3:+13095725 Msa0940550:CDS
GAAACGACCGGGACGACACA+GGG 0.522419 6_3:-13096667 None:intergenic
CCGACAAGCAACACTCCTCT+AGG 0.523663 6_3:-13095757 None:intergenic
GATCCAGCCCTGTGTCGTCC+CGG 0.528518 6_3:+13096660 Msa0940550:CDS
AATCTTGTGGTGGAAGAGGA+AGG 0.529777 6_3:-13092547 None:intergenic
CACTTGTTAGTAGTAGAAGT+AGG 0.531041 6_3:+13092985 Msa0940550:CDS
TTCTGCAAAAGTAGAGCTCA+TGG 0.532444 6_3:+13093796 Msa0940550:CDS
AGGGGATCTTAATTACCAAA+AGG 0.534990 6_3:+13095720 Msa0940550:CDS
ATTCCTTCTTAGTTTGATGA+GGG 0.535065 6_3:+13093574 Msa0940550:CDS
TCGGCGTATATATTATAATA+CGG 0.537481 6_3:+13093334 Msa0940550:CDS
AAATGATTGAATGTGGAAAT+GGG 0.539688 6_3:-13092604 None:intergenic
TCACTTCTTCCCATCAATGA+TGG 0.540303 6_3:-13097841 None:intergenic
AATTCCTTCTTAGTTTGATG+AGG 0.542897 6_3:+13093573 Msa0940550:CDS
ACTTGTTAGTAGTAGAAGTA+GGG 0.546654 6_3:+13092986 Msa0940550:CDS
AGGTTTCAACAAAATGGTGT+TGG 0.547536 6_3:+13092948 Msa0940550:CDS
TACTTGCACGTGCAATAGCA+GGG 0.549928 6_3:+13095803 Msa0940550:CDS
TAGTTTGATGAGGGAAAAGG+GGG 0.551133 6_3:+13093583 Msa0940550:CDS
AGCCACATCAAAGGAATCAA+AGG 0.552057 6_3:-13093683 None:intergenic
TTAATTGCCACAGTTACTGA+TGG 0.552662 6_3:+13096798 Msa0940550:CDS
TTTGAGAGGAGTTCCTTTGG+AGG 0.552837 6_3:+13096752 Msa0940550:CDS
GATCTTAATTACCAAAAGGT+AGG 0.556895 6_3:+13095724 Msa0940550:CDS
AAACATTTCAACGAACTCAC+TGG 0.559253 6_3:-13095857 None:intergenic
GAAGAATGATTATGGTAAAG+GGG 0.559832 6_3:+13093016 Msa0940550:CDS
GGCTCCTCAATCTGTGTTAG+CGG 0.560045 6_3:+13093619 Msa0940550:CDS
TACTTTCCTCGAGAAACGAC+CGG 0.560952 6_3:-13096679 None:intergenic
AAGAATGATTATGGTAAAGG+GGG 0.562838 6_3:+13093017 Msa0940550:CDS
TAGATAGTTTCATGTCTGCA+AGG 0.562996 6_3:+13095700 Msa0940550:intron
AGATAGTTTCATGTCTGCAA+GGG 0.563490 6_3:+13095701 Msa0940550:intron
GATGAACTTGATGCGGTTGG+TGG 0.563575 6_3:+13095955 Msa0940550:CDS
ATTGATGAACTTGATGCGGT+TGG 0.564921 6_3:+13095952 Msa0940550:CDS
ATTGTGTAGAATTCAAGAAG+TGG 0.570636 6_3:-13092570 None:intergenic
ACTTTCCTCGAGAAACGACC+GGG 0.571156 6_3:-13096678 None:intergenic
ATATTAGCTGTGCATTTGAG+AGG 0.572900 6_3:+13096738 Msa0940550:CDS
AGTAAAATAAGCAAGGAGCT+TGG 0.574154 6_3:+13097799 Msa0940550:CDS
CTGGATCCAAGGCTTCTGGC+CGG 0.574869 6_3:-13096644 None:intergenic
ATCGCCGCTAACACAGATTG+AGG 0.577228 6_3:-13093623 None:intergenic
AGTGAGAATGCTGTAAGATC+TGG 0.580335 6_3:+13093452 Msa0940550:CDS
GAGAATGCTGTAAGATCTGG+TGG 0.581579 6_3:+13093455 Msa0940550:CDS
GTAGGGGAACCTGACGAAGA+AGG 0.589232 6_3:+13096705 Msa0940550:CDS
GCTTTGCTTGCTGCTCGAAG+AGG 0.589336 6_3:+13096861 Msa0940550:CDS
AAACCTAATAGTCAGACAGT+TGG 0.591387 6_3:+13093749 Msa0940550:CDS
AGGTAGTGAAACTGTGGCAA+GGG 0.592368 6_3:+13097714 Msa0940550:intron
CTCGAGGAAAGTATTTGTAG+GGG 0.592820 6_3:+13096689 Msa0940550:CDS
AAGGTCTAGTAAAATAAGCA+AGG 0.598431 6_3:+13097792 Msa0940550:CDS
CTGCTAGTCCAGCTAAGAAG+CGG 0.598949 6_3:+13093726 Msa0940550:CDS
GAAGAAGCTTCAATGATGAA+CGG 0.603023 6_3:+13095986 Msa0940550:CDS
AGGAAACAAGATGACATACA+AGG 0.608187 6_3:+13097865 Msa0940550:CDS
GGGAACCTGACGAAGAAGGA+AGG 0.608258 6_3:+13096709 Msa0940550:CDS
TTAGTTTGATGAGGGAAAAG+GGG 0.610943 6_3:+13093582 Msa0940550:CDS
ATGTTAGCATCCTCCTCCAA+AGG 0.613955 6_3:-13096765 None:intergenic
CAGGTAGTGAAACTGTGGCA+AGG 0.614725 6_3:+13097713 Msa0940550:intron
TCTTAATTACCAAAAGGTAG+GGG 0.616122 6_3:+13095726 Msa0940550:CDS
CCATCAATGATGGCATCCAA+GGG 0.617279 6_3:-13097831 None:intergenic
CTACTTCTACTACTAACAAG+TGG 0.617574 6_3:-13092984 None:intergenic
ACAGTTACTGATGGTCTCGT+AGG 0.621604 6_3:+13096807 Msa0940550:CDS
GATGCGGTTGGTGGCAAGCG+TGG 0.625586 6_3:+13095964 Msa0940550:CDS
ATTCAAGAAGTGGAATCTTG+TGG 0.629032 6_3:-13092560 None:intergenic
ACAAGTAGTAGATGTTTCGA+TGG 0.632621 6_3:+13093406 Msa0940550:CDS
AAGAAATTCTCTAAGAGACG+AGG 0.632753 6_3:+13093500 Msa0940550:CDS
CGATATATAAGCCACATCAA+AGG 0.635077 6_3:-13093692 None:intergenic
TAACCTGTAAACAAATACAA+CGG 0.637673 6_3:-13098054 None:intergenic
GATAGTTTCATGTCTGCAAG+GGG 0.647274 6_3:+13095702 Msa0940550:intron
AATCTGTGTTAGCGGCGATG+AGG 0.652895 6_3:+13093627 Msa0940550:CDS
CAAGAAGTGGAATCTTGTGG+TGG 0.653275 6_3:-13092557 None:intergenic
ATTCATTGATGAACTTGATG+CGG 0.654455 6_3:+13095948 Msa0940550:CDS
AGAATGATTATGGTAAAGGG+GGG 0.655129 6_3:+13093018 Msa0940550:CDS
ATAACCAATAACCGTAACCT+CGG 0.664720 6_3:-13093083 None:intergenic
CTCTGCAGGTAGTGAAACTG+TGG 0.666734 6_3:+13097708 Msa0940550:intron
GAAAATGACCCAGTACAACA+AGG 0.669902 6_3:-13092768 None:intergenic
TAGTTGCTGACCGAAATGGA+TGG 0.680096 6_3:+13096579 Msa0940550:intron
TACGAGACCATCAGTAACTG+TGG 0.680129 6_3:-13096805 None:intergenic
ACTTGCACGTGCAATAGCAG+GGG 0.689234 6_3:+13095804 Msa0940550:CDS
GTAGGGGCAAAGCTACCTAG+AGG 0.692537 6_3:+13095742 Msa0940550:CDS
ATTTGAATCAGAAATGAGAG+TGG 0.693418 6_3:+13096602 Msa0940550:CDS
GACGAGGTTCGATTCCTGAG+TGG 0.695014 6_3:+13093516 Msa0940550:CDS
GAGTCTTCGAAATGGGAATG+TGG 0.703259 6_3:+13093286 Msa0940550:CDS
GATGGATAAGGATATAGACA+AGG 0.709329 6_3:+13093424 Msa0940550:CDS
AATGTCTTGCCAGTTCCTGG+AGG 0.719587 6_3:-13095781 None:intergenic
TCTTCGAGCAGCAAGCAAAG+CGG 0.719728 6_3:-13096859 None:intergenic
TGCAAAAGTAGAGCTCATGG+AGG 0.758952 6_3:+13093799 Msa0940550:CDS
TGATAACTGTGATCACACTG+TGG 0.773244 6_3:+13093657 Msa0940550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATATAATCTAATAAAATT+AGG + chr6_3:13094910-13094929 Msa0940550:intron 10.0%
!! AATAATTTGATAAAAAAAAC+TGG - chr6_3:13096416-13096435 None:intergenic 10.0%
!!! ATTCTATATAAATTGAATTT+TGG + chr6_3:13097019-13097038 Msa0940550:intron 10.0%
!!! GTTAAAAATTAGGAATTTTA+GGG + chr6_3:13092803-13092822 Msa0940550:CDS 15.0%
!!! AATGCTATAATTTTGAAAAT+GGG + chr6_3:13092868-13092887 Msa0940550:CDS 15.0%
!! AATAAGAAATTTGAGTATTA+TGG + chr6_3:13092900-13092919 Msa0940550:CDS 15.0%
!! TAATTACTTATAACCATATT+CGG + chr6_3:13094213-13094232 Msa0940550:intron 15.0%
!!! CTAAATGTTGTATTTTAAAA+GGG + chr6_3:13095368-13095387 Msa0940550:intron 15.0%
!! ATAACATTAAAACATCTTAT+AGG + chr6_3:13097363-13097382 Msa0940550:intron 15.0%
!! AATTTCTATTACAAAAGATA+AGG - chr6_3:13097413-13097432 None:intergenic 15.0%
!!! TCAAAACTAATTCATTTTAT+AGG - chr6_3:13098093-13098112 None:intergenic 15.0%
!!! AAATGAATTAGTTTTGATTT+TGG + chr6_3:13098096-13098115 Msa0940550:three_prime_UTR 15.0%
!! ACAGAATTCAACAAAAAAAT+TGG - chr6_3:13092665-13092684 None:intergenic 20.0%
!!! GATTTGATTTTGAATAGAAA+TGG + chr6_3:13092731-13092750 Msa0940550:exon 20.0%
!!! TTCCTAATTTTTAACCTATT+TGG - chr6_3:13092798-13092817 None:intergenic 20.0%
!!! GGTTAAAAATTAGGAATTTT+AGG + chr6_3:13092802-13092821 Msa0940550:CDS 20.0%
!!! CAATGCTATAATTTTGAAAA+TGG + chr6_3:13092867-13092886 Msa0940550:CDS 20.0%
!!! ATTTTGAAAATGGGTTTTTA+TGG + chr6_3:13092877-13092896 Msa0940550:CDS 20.0%
!!! AAAGTAGAAATTTTTCATTG+AGG + chr6_3:13092928-13092947 Msa0940550:CDS 20.0%
!!! TGTTTGTTAGGAAAAATATT+AGG + chr6_3:13093153-13093172 Msa0940550:CDS 20.0%
!!! TACAAACTTTTATTCTTATG+CGG + chr6_3:13093939-13093958 Msa0940550:intron 20.0%
!!! ATGTAATTTGTCTTTTTGAA+TGG + chr6_3:13093992-13094011 Msa0940550:intron 20.0%
!!! AAATAAGTATAGTTTTTCCA+TGG + chr6_3:13094055-13094074 Msa0940550:intron 20.0%
!!! AATAAGTATAGTTTTTCCAT+GGG + chr6_3:13094056-13094075 Msa0940550:intron 20.0%
!! TTACTTAATTGTTTACATCT+AGG + chr6_3:13094434-13094453 Msa0940550:intron 20.0%
!!! AAACAAGTAGAGTATTATAT+AGG + chr6_3:13094499-13094518 Msa0940550:intron 20.0%
!!! AACAAGTAGAGTATTATATA+GGG + chr6_3:13094500-13094519 Msa0940550:intron 20.0%
!! TTTGTGTATCAATATACAAA+TGG + chr6_3:13094551-13094570 Msa0940550:intron 20.0%
!!! ATAAAATAAGAGAAAAGTGT+TGG - chr6_3:13094667-13094686 None:intergenic 20.0%
!! ATGGTCAAAAATTAAAGTTA+CGG - chr6_3:13094824-13094843 None:intergenic 20.0%
!!! AAGTTTAATTTGGTTTTGAT+AGG - chr6_3:13095031-13095050 None:intergenic 20.0%
!!! GTTAAAAGTATCAAATATCT+CGG - chr6_3:13095184-13095203 None:intergenic 20.0%
!!! GCTAAATGTTGTATTTTAAA+AGG + chr6_3:13095367-13095386 Msa0940550:intron 20.0%
!!! TACAAAATTTTGATGCAATT+GGG - chr6_3:13095436-13095455 None:intergenic 20.0%
!! AATATAAAAGCAATACAGAT+TGG - chr6_3:13095502-13095521 None:intergenic 20.0%
!!! GTTTTCATCATTTCTAATTT+TGG + chr6_3:13095610-13095629 Msa0940550:intron 20.0%
!! AAATGACATAGAAAATTGAT+TGG - chr6_3:13096195-13096214 None:intergenic 20.0%
!! TTGATTTATGATTTGAATCT+TGG + chr6_3:13096213-13096232 Msa0940550:intron 20.0%
!! TTCATAATAAGATTTGATTC+AGG + chr6_3:13096318-13096337 Msa0940550:intron 20.0%
!! ATCAACGAAAAATTCTTTAA+AGG - chr6_3:13096558-13096577 None:intergenic 20.0%
!! TCACACAAGTTAATAATATA+CGG - chr6_3:13096993-13097012 None:intergenic 20.0%
!! AAAACATCTTATAGGTTATA+TGG + chr6_3:13097371-13097390 Msa0940550:intron 20.0%
!! AATATCATCATTTAATGTGA+AGG - chr6_3:13097627-13097646 None:intergenic 20.0%
!! AAAAAAATTGTTTGCATACA+AGG - chr6_3:13097983-13098002 None:intergenic 20.0%
! AAATGATTGAATGTGGAAAT+GGG - chr6_3:13092607-13092626 None:intergenic 25.0%
! CACCAAATAGGTTAAAAATT+AGG + chr6_3:13092793-13092812 Msa0940550:CDS 25.0%
! GATGATAAGAAGAATGATTA+TGG + chr6_3:13093008-13093027 Msa0940550:CDS 25.0%
! AAGAAGAATGATTATGGTAA+AGG + chr6_3:13093014-13093033 Msa0940550:CDS 25.0%
! AGAAGAATGATTATGGTAAA+GGG + chr6_3:13093015-13093034 Msa0940550:CDS 25.0%
! TGTTAGGAAAAATATTAGGA+CGG + chr6_3:13093157-13093176 Msa0940550:CDS 25.0%
!!! TTTTGAAGTTTACTTCACTT+CGG + chr6_3:13093228-13093247 Msa0940550:CDS 25.0%
! TCGGCGTATATATTATAATA+CGG + chr6_3:13093334-13093353 Msa0940550:CDS 25.0%
! TGAGAATGTTGAAAATGATA+AGG + chr6_3:13093361-13093380 Msa0940550:CDS 25.0%
! TTCTTCAATTTATTCAATGC+AGG - chr6_3:13093485-13093504 None:intergenic 25.0%
!! TACTCAAAGCTTTTATGTTT+TGG - chr6_3:13094120-13094139 None:intergenic 25.0%
! GAGATAAAAAATTCCGAATA+TGG - chr6_3:13094229-13094248 None:intergenic 25.0%
! TATCTAGATAGATAGTCAAA+TGG - chr6_3:13094274-13094293 None:intergenic 25.0%
! TACTTGTTTAATTGTACCTT+TGG - chr6_3:13094488-13094507 None:intergenic 25.0%
!! ACAAGTAGAGTATTATATAG+GGG + chr6_3:13094501-13094520 Msa0940550:intron 25.0%
! AAACTGAATCTCATAAAACA+GGG - chr6_3:13094700-13094719 None:intergenic 25.0%
! TAAACTGAATCTCATAAAAC+AGG - chr6_3:13094701-13094720 None:intergenic 25.0%
! TCAGTTTAATCATTATGCTT+CGG + chr6_3:13094713-13094732 Msa0940550:intron 25.0%
!!! GTTTTTCAGTTTGTTGATTT+TGG - chr6_3:13094967-13094986 None:intergenic 25.0%
! ATATTTATTTGATCCTTCCT+CGG + chr6_3:13095236-13095255 Msa0940550:intron 25.0%
!! TTGTAATTTTATCACTCAAC+CGG - chr6_3:13095332-13095351 None:intergenic 25.0%
!!! CTACAAAATTTTGATGCAAT+TGG - chr6_3:13095437-13095456 None:intergenic 25.0%
! ATCATTCAATGAATACAACA+CGG - chr6_3:13095477-13095496 None:intergenic 25.0%
! ATAGTCACAATTCAAAGAAA+CGG - chr6_3:13095528-13095547 None:intergenic 25.0%
! TTTCTTTGAATTGTGACTAT+TGG + chr6_3:13095528-13095547 Msa0940550:intron 25.0%
! TAGAAATGATGAAAACGTAA+AGG - chr6_3:13095606-13095625 None:intergenic 25.0%
! ATGAAACTATCTACAAATCA+GGG - chr6_3:13095693-13095712 None:intergenic 25.0%
! ATCTTAATTACCAAAAGGTA+GGG + chr6_3:13095725-13095744 Msa0940550:CDS 25.0%
! TCATCAATGAATATGATTGA+TGG - chr6_3:13095940-13095959 None:intergenic 25.0%
! CAAAGTTGACAAAAAAAAAG+TGG - chr6_3:13096167-13096186 None:intergenic 25.0%
! TGATTCAGGATTTGAAAAAT+AGG + chr6_3:13096332-13096351 Msa0940550:intron 25.0%
! ACATCTAAATTGTTTGACAA+TGG - chr6_3:13096393-13096412 None:intergenic 25.0%
! TTTAGTATATACTGTCTACA+TGG + chr6_3:13096450-13096469 Msa0940550:intron 25.0%
! TAAATATTCAACGTGTTCAT+TGG + chr6_3:13096477-13096496 Msa0940550:intron 25.0%
! ATCTAACAAAGAATCATCAT+TGG - chr6_3:13096938-13096957 None:intergenic 25.0%
! TAAAATCAAATAGTGCATGA+AGG + chr6_3:13097102-13097121 Msa0940550:intron 25.0%
!! TCTGAAGTAGTTATATCTAA+GGG + chr6_3:13097235-13097254 Msa0940550:intron 25.0%
!! TGATGTATTTGAGTTAACTA+TGG + chr6_3:13097269-13097288 Msa0940550:intron 25.0%
!! ATGTTATTCTAAAGAGCTTA+TGG - chr6_3:13097350-13097369 None:intergenic 25.0%
!!! GAAAGCATTTATGATATAAG+CGG + chr6_3:13097456-13097475 Msa0940550:intron 25.0%
!! TTCAATGATTGATAACCTAA+TGG - chr6_3:13097892-13097911 None:intergenic 25.0%
! CAATCATTGAATTCATGATT+TGG + chr6_3:13097901-13097920 Msa0940550:exon 25.0%
! ATTGTACAAGTAAATTTGAC+AGG - chr6_3:13097931-13097950 None:intergenic 25.0%
! AATAAGTGTGAACAATGAAA+AGG - chr6_3:13097959-13097978 None:intergenic 25.0%
! TAACCTGTAAACAAATACAA+CGG - chr6_3:13098057-13098076 None:intergenic 25.0%
ATTGTGTAGAATTCAAGAAG+TGG - chr6_3:13092573-13092592 None:intergenic 30.0%
GAAATGATTGAATGTGGAAA+TGG - chr6_3:13092608-13092627 None:intergenic 30.0%
TTCAGAGAAATGATTGAATG+TGG - chr6_3:13092614-13092633 None:intergenic 30.0%
!! TTTTCTTTACCTTGTTGTAC+TGG + chr6_3:13092759-13092778 Msa0940550:CDS 30.0%
! TTTCTTTACCTTGTTGTACT+GGG + chr6_3:13092760-13092779 Msa0940550:CDS 30.0%
!!! AGGAATTTTAGGGTTTATAG+AGG + chr6_3:13092813-13092832 Msa0940550:CDS 30.0%
TCATTGAGGTTTCAACAAAA+TGG + chr6_3:13092942-13092961 Msa0940550:CDS 30.0%
! ACTTGTTAGTAGTAGAAGTA+GGG + chr6_3:13092986-13093005 Msa0940550:CDS 30.0%
GAAGAATGATTATGGTAAAG+GGG + chr6_3:13093016-13093035 Msa0940550:CDS 30.0%
AAGAATGATTATGGTAAAGG+GGG + chr6_3:13093017-13093036 Msa0940550:CDS 30.0%
! TATTGGTTATGAGGATGAAA+AGG + chr6_3:13093096-13093115 Msa0940550:CDS 30.0%
ATTGGTTATGAGGATGAAAA+GGG + chr6_3:13093097-13093116 Msa0940550:CDS 30.0%
!! TCTTGAATCTGTTTTGAATG+AGG + chr6_3:13093124-13093143 Msa0940550:CDS 30.0%
AGTGAAAATTGTTCCGTATT+CGG + chr6_3:13093253-13093272 Msa0940550:CDS 30.0%
!!! GAGAAAGTTTTAGTTGAAGA+GGG + chr6_3:13093308-13093327 Msa0940550:CDS 30.0%
!!! AGAAAGTTTTAGTTGAAGAG+GGG + chr6_3:13093309-13093328 Msa0940550:CDS 30.0%
! AATTCCTTCTTAGTTTGATG+AGG + chr6_3:13093573-13093592 Msa0940550:CDS 30.0%
! ATTCCTTCTTAGTTTGATGA+GGG + chr6_3:13093574-13093593 Msa0940550:CDS 30.0%
! AGGTAACAATCTCATCTTTT+AGG + chr6_3:13093819-13093838 Msa0940550:intron 30.0%
CCTGATGAGATAAATATCAT+TGG - chr6_3:13093895-13093914 None:intergenic 30.0%
CCAATGATATTTATCTCATC+AGG + chr6_3:13093892-13093911 Msa0940550:intron 30.0%
!! GTTTCTAGTATTTCGTTAAC+TGG + chr6_3:13093916-13093935 Msa0940550:intron 30.0%
! AATGGTTAAGTAAGACCTTT+TGG + chr6_3:13094010-13094029 Msa0940550:intron 30.0%
CATCTTTGTATGTTACCAAA+AGG - chr6_3:13094028-13094047 None:intergenic 30.0%
!! CTTTTGGTAACATACAAAGA+TGG + chr6_3:13094026-13094045 Msa0940550:intron 30.0%
AGAAAGTTCAACTAACTTCT+TGG + chr6_3:13094150-13094169 Msa0940550:intron 30.0%
TTCAACTAACTTCTTGGTTT+AGG + chr6_3:13094156-13094175 Msa0940550:intron 30.0%
AAGTAAATCATATATTCCCG+AGG + chr6_3:13094350-13094369 Msa0940550:intron 30.0%
TCTTTGAATCACAAAATGTC+AGG + chr6_3:13094388-13094407 Msa0940550:intron 30.0%
! CAAGTAGAGTATTATATAGG+GGG + chr6_3:13094502-13094521 Msa0940550:intron 30.0%
AACTGAATCTCATAAAACAG+GGG - chr6_3:13094699-13094718 None:intergenic 30.0%
GTCAAAAATTAAAGTTACGG+TGG - chr6_3:13094821-13094840 None:intergenic 30.0%
TGACACACACAAGTTTAATT+TGG - chr6_3:13095041-13095060 None:intergenic 30.0%
CAATCTATAGCAGTTTGAAT+TGG - chr6_3:13095297-13095316 None:intergenic 30.0%
CAATTCAAACTGCTATAGAT+TGG + chr6_3:13095295-13095314 Msa0940550:intron 30.0%
! TTAAAAGGGTATAGTACATG+TGG + chr6_3:13095382-13095401 Msa0940550:intron 30.0%
!!! TCAACTCGCTATAGTTTTAA+GGG - chr6_3:13095565-13095584 None:intergenic 30.0%
!! TTCAACTCGCTATAGTTTTA+AGG - chr6_3:13095566-13095585 None:intergenic 30.0%
CATGAAACTATCTACAAATC+AGG - chr6_3:13095694-13095713 None:intergenic 30.0%
GATCTTAATTACCAAAAGGT+AGG + chr6_3:13095724-13095743 Msa0940550:CDS 30.0%
TCTTAATTACCAAAAGGTAG+GGG + chr6_3:13095726-13095745 Msa0940550:CDS 30.0%
! ATTTCCTTGCTGTACTAAAA+AGG - chr6_3:13095912-13095931 None:intergenic 30.0%
ATTCATTGATGAACTTGATG+CGG + chr6_3:13095948-13095967 Msa0940550:CDS 30.0%
TCAATATCTTAAGATGCATG+TGG + chr6_3:13096087-13096106 Msa0940550:intron 30.0%
GGCTACATTAAGTTTAAAAG+AGG - chr6_3:13096142-13096161 None:intergenic 30.0%
GTTGACAAAAAAAAAGTGGT+TGG - chr6_3:13096163-13096182 None:intergenic 30.0%
GATTCAAATCATGAATCAGA+AGG - chr6_3:13096358-13096377 None:intergenic 30.0%
TGATTCAAATCCATCCATTT+CGG - chr6_3:13096592-13096611 None:intergenic 30.0%
ATTTGAATCAGAAATGAGAG+TGG + chr6_3:13096602-13096621 Msa0940550:CDS 30.0%
!! AGCTGATTTTATATGCTATC+TGG + chr6_3:13097147-13097166 Msa0940550:intron 30.0%
!! GCTGATTTTATATGCTATCT+GGG + chr6_3:13097148-13097167 Msa0940550:intron 30.0%
!! CTCTGAAGTAGTTATATCTA+AGG + chr6_3:13097234-13097253 Msa0940550:intron 30.0%
GAATCAATGATAAGCAACTA+AGG + chr6_3:13097773-13097792 Msa0940550:CDS 30.0%
AAGGTCTAGTAAAATAAGCA+AGG + chr6_3:13097792-13097811 Msa0940550:CDS 30.0%
ATTCAAGAAGTGGAATCTTG+TGG - chr6_3:13092563-13092582 None:intergenic 35.0%
AGGTTTCAACAAAATGGTGT+TGG + chr6_3:13092948-13092967 Msa0940550:CDS 35.0%
CTACTTCTACTACTAACAAG+TGG - chr6_3:13092987-13093006 None:intergenic 35.0%
! CACTTGTTAGTAGTAGAAGT+AGG + chr6_3:13092985-13093004 Msa0940550:CDS 35.0%
AGAATGATTATGGTAAAGGG+GGG + chr6_3:13093018-13093037 Msa0940550:CDS 35.0%
! AGAGATTTTCGTTGAGATTG+CGG + chr6_3:13093060-13093079 Msa0940550:CDS 35.0%
ATAACCAATAACCGTAACCT+CGG - chr6_3:13093086-13093105 None:intergenic 35.0%
!! GAATCTGTTTTGAATGAGGT+TGG + chr6_3:13093128-13093147 Msa0940550:CDS 35.0%
TAGGAAAAATATTAGGACGG+TGG + chr6_3:13093160-13093179 Msa0940550:CDS 35.0%
! GAATACGGAACAATTTTCAC+TGG - chr6_3:13093254-13093273 None:intergenic 35.0%
!!! GGAGAAAGTTTTAGTTGAAG+AGG + chr6_3:13093307-13093326 Msa0940550:CDS 35.0%
ACAAGTAGTAGATGTTTCGA+TGG + chr6_3:13093406-13093425 Msa0940550:CDS 35.0%
AGTAGATGTTTCGATGGATA+AGG + chr6_3:13093412-13093431 Msa0940550:CDS 35.0%
GATGGATAAGGATATAGACA+AGG + chr6_3:13093424-13093443 Msa0940550:CDS 35.0%
! AAGAAATTCTCTAAGAGACG+AGG + chr6_3:13093500-13093519 Msa0940550:CDS 35.0%
!! GTCATGATCTATTTTTCTCG+TGG - chr6_3:13093549-13093568 None:intergenic 35.0%
TTTCCCTCATCAAACTAAGA+AGG - chr6_3:13093580-13093599 None:intergenic 35.0%
! TCTTAGTTTGATGAGGGAAA+AGG + chr6_3:13093580-13093599 Msa0940550:CDS 35.0%
! CTTAGTTTGATGAGGGAAAA+GGG + chr6_3:13093581-13093600 Msa0940550:CDS 35.0%
! TTAGTTTGATGAGGGAAAAG+GGG + chr6_3:13093582-13093601 Msa0940550:CDS 35.0%
TACCTTTGATTCCTTTGATG+TGG + chr6_3:13093681-13093700 Msa0940550:CDS 35.0%
CGATATATAAGCCACATCAA+AGG - chr6_3:13093695-13093714 None:intergenic 35.0%
AAACCTAATAGTCAGACAGT+TGG + chr6_3:13093749-13093768 Msa0940550:CDS 35.0%
AATCCAACTGTCTGACTATT+AGG - chr6_3:13093755-13093774 None:intergenic 35.0%
GTTGGATTTGAAGATGTTCA+AGG + chr6_3:13093767-13093786 Msa0940550:CDS 35.0%
TTCCATGGGATTATAATCAG+TGG + chr6_3:13094070-13094089 Msa0940550:intron 35.0%
! TACCACTGATTATAATCCCA+TGG - chr6_3:13094075-13094094 None:intergenic 35.0%
!!! CAGTGGTAGATTTTAGCTTT+TGG + chr6_3:13094087-13094106 Msa0940550:intron 35.0%
!!! GTAGATTTTAGCTTTTGGCA+CGG + chr6_3:13094092-13094111 Msa0940550:intron 35.0%
!!! GGATTTTTGAGATGTGACAT+TGG + chr6_3:13094177-13094196 Msa0940550:intron 35.0%
CTAAGAATCGTGATTAGCAA+TGG - chr6_3:13094584-13094603 None:intergenic 35.0%
AAAATTAAAGTTACGGTGGC+AGG - chr6_3:13094817-13094836 None:intergenic 35.0%
ACTGTAAACCTCACCTATAT+AGG + chr6_3:13094874-13094893 Msa0940550:intron 35.0%
CTGTAAACCTCACCTATATA+GGG + chr6_3:13094875-13094894 Msa0940550:intron 35.0%
TGTAAACCTCACCTATATAG+GGG + chr6_3:13094876-13094895 Msa0940550:intron 35.0%
ATTTATGAGCACCCCTATAT+AGG - chr6_3:13094890-13094909 None:intergenic 35.0%
!!! TTACTTTTTTCTTCCGAGGA+AGG - chr6_3:13095252-13095271 None:intergenic 35.0%
!!! GTCTTTACTTTTTTCTTCCG+AGG - chr6_3:13095256-13095275 None:intergenic 35.0%
TAAAGACTTAAACCGAGACA+AGG + chr6_3:13095269-13095288 Msa0940550:intron 35.0%
TTTGAATTGGATCCTTGTCT+CGG - chr6_3:13095284-13095303 None:intergenic 35.0%
! TAGATTGGATTAGAGTGAAC+CGG + chr6_3:13095310-13095329 Msa0940550:intron 35.0%
TAGATAGTTTCATGTCTGCA+AGG + chr6_3:13095700-13095719 Msa0940550:intron 35.0%
AGATAGTTTCATGTCTGCAA+GGG + chr6_3:13095701-13095720 Msa0940550:intron 35.0%
AGGGGATCTTAATTACCAAA+AGG + chr6_3:13095720-13095739 Msa0940550:CDS 35.0%
AAACATTTCAACGAACTCAC+TGG - chr6_3:13095860-13095879 None:intergenic 35.0%
GAGTTCGTTGAAATGTTTGT+TGG + chr6_3:13095862-13095881 Msa0940550:CDS 35.0%
! GTTGAAATGTTTGTTGGAAG+AGG + chr6_3:13095868-13095887 Msa0940550:CDS 35.0%
GAAGAAGCTTCAATGATGAA+CGG + chr6_3:13095986-13096005 Msa0940550:CDS 35.0%
AAGAAGCTTCAATGATGAAC+GGG + chr6_3:13095987-13096006 Msa0940550:CDS 35.0%
GCAACAATTGATTGAACTCA+TGG + chr6_3:13096061-13096080 Msa0940550:intron 35.0%
! TTCTTTAAAGGTCAGCTTAG+AGG - chr6_3:13096546-13096565 None:intergenic 35.0%
!! TTCTCGAGGAAAGTATTTGT+AGG + chr6_3:13096687-13096706 Msa0940550:CDS 35.0%
!! TCTCGAGGAAAGTATTTGTA+GGG + chr6_3:13096688-13096707 Msa0940550:CDS 35.0%
ATATTAGCTGTGCATTTGAG+AGG + chr6_3:13096738-13096757 Msa0940550:CDS 35.0%
TTAATTGCCACAGTTACTGA+TGG + chr6_3:13096798-13096817 Msa0940550:CDS 35.0%
ATCATGTCACATAAGCACTT+AGG - chr6_3:13097509-13097528 None:intergenic 35.0%
TGAAGGTGAAAAGTCAATGA+AGG - chr6_3:13097610-13097629 None:intergenic 35.0%
GCTATTGAAAGAGCAAAGTT+TGG + chr6_3:13097751-13097770 Msa0940550:CDS 35.0%
AGTAAAATAAGCAAGGAGCT+TGG + chr6_3:13097799-13097818 Msa0940550:CDS 35.0%
AGGAAACAAGATGACATACA+AGG + chr6_3:13097865-13097884 Msa0940550:CDS 35.0%
AAGCCGTTGTATTTGTTTAC+AGG + chr6_3:13098051-13098070 Msa0940550:three_prime_UTR 35.0%
GAAAATGACCCAGTACAACA+AGG - chr6_3:13092771-13092790 None:intergenic 40.0%
!! GGTCATTTTCGACACCAAAT+AGG + chr6_3:13092781-13092800 Msa0940550:CDS 40.0%
! GGTTACGGTTATTGGTTATG+AGG + chr6_3:13093087-13093106 Msa0940550:CDS 40.0%
! ATGAGGTTGGAGTGTTTGTT+AGG + chr6_3:13093141-13093160 Msa0940550:CDS 40.0%
TTGATTGCGAGTCTTCGAAA+TGG + chr6_3:13093278-13093297 Msa0940550:CDS 40.0%
TGATTGCGAGTCTTCGAAAT+GGG + chr6_3:13093279-13093298 Msa0940550:CDS 40.0%
!! TTTTAGTTGAAGAGGGGTCT+CGG + chr6_3:13093315-13093334 Msa0940550:CDS 40.0%
AGTGAGAATGCTGTAAGATC+TGG + chr6_3:13093452-13093471 Msa0940550:CDS 40.0%
TAGTTTGATGAGGGAAAAGG+GGG + chr6_3:13093583-13093602 Msa0940550:CDS 40.0%
AAAGGGGGTTACATTTAGCT+CGG + chr6_3:13093598-13093617 Msa0940550:CDS 40.0%
TGATAACTGTGATCACACTG+TGG + chr6_3:13093657-13093676 Msa0940550:CDS 40.0%
AGCCACATCAAAGGAATCAA+AGG - chr6_3:13093686-13093705 None:intergenic 40.0%
TTCTGCAAAAGTAGAGCTCA+TGG + chr6_3:13093796-13093815 Msa0940550:CDS 40.0%
CTTTGGTACCACAAAAGCAA+GGG - chr6_3:13094471-13094490 None:intergenic 40.0%
! GTAGAGTATTATATAGGGGG+TGG + chr6_3:13094505-13094524 Msa0940550:intron 40.0%
TCACGATTCTTAGCGTGTAT+TGG + chr6_3:13094591-13094610 Msa0940550:intron 40.0%
GGAGCATAGTATTTCAGTGA+CGG - chr6_3:13094646-13094665 None:intergenic 40.0%
AATCTCATAAAACAGGGGAG+AGG - chr6_3:13094694-13094713 None:intergenic 40.0%
! GATGAAAACGTAAAGGCATG+AGG - chr6_3:13095599-13095618 None:intergenic 40.0%
TCAGGGACAGTGTCAATATA+CGG - chr6_3:13095676-13095695 None:intergenic 40.0%
GATAGTTTCATGTCTGCAAG+GGG + chr6_3:13095702-13095721 Msa0940550:intron 40.0%
CTGGCAGATACTGTGAAAAA+GGG - chr6_3:13095841-13095860 None:intergenic 40.0%
ACTGGCAGATACTGTGAAAA+AGG - chr6_3:13095842-13095861 None:intergenic 40.0%
!! GAGACCTTTTTAGTACAGCA+AGG + chr6_3:13095905-13095924 Msa0940550:CDS 40.0%
ATTGATGAACTTGATGCGGT+TGG + chr6_3:13095952-13095971 Msa0940550:CDS 40.0%
TTGTCATTGCAGCAACTAAC+CGG + chr6_3:13096625-13096644 Msa0940550:CDS 40.0%
!! CTCGAGGAAAGTATTTGTAG+GGG + chr6_3:13096689-13096708 Msa0940550:CDS 40.0%
! AAGCAGTTGTGAGGCTATTT+TGG + chr6_3:13097295-13097314 Msa0940550:intron 40.0%
ATAAGCACTTAGGCATGGTT+TGG - chr6_3:13097499-13097518 None:intergenic 40.0%
GAAAAGTCAATGAAGGCAGA+GGG - chr6_3:13097603-13097622 None:intergenic 40.0%
TGAAAAGTCAATGAAGGCAG+AGG - chr6_3:13097604-13097623 None:intergenic 40.0%
AATCCATATTTGCACTCTGC+AGG + chr6_3:13097694-13097713 Msa0940550:intron 40.0%
TGTGGCAAGGGAAGATATAA+TGG + chr6_3:13097726-13097745 Msa0940550:CDS 40.0%
TCACTTCTTCCCATCAATGA+TGG - chr6_3:13097844-13097863 None:intergenic 40.0%
CATTGATGGGAAGAAGTGAT+AGG + chr6_3:13097845-13097864 Msa0940550:CDS 40.0%
GATGACATACAAGGACCATT+AGG + chr6_3:13097874-13097893 Msa0940550:CDS 40.0%
!!! CAACGGCTTCTCATTTTTTG+TGG - chr6_3:13098040-13098059 None:intergenic 40.0%
! AATCTTGTGGTGGAAGAGGA+AGG - chr6_3:13092550-13092569 None:intergenic 45.0%
CAAGAAGTGGAATCTTGTGG+TGG - chr6_3:13092560-13092579 None:intergenic 45.0%
CTCGCAATCAAGTCCGAATA+CGG - chr6_3:13093269-13093288 None:intergenic 45.0%
GAGTCTTCGAAATGGGAATG+TGG + chr6_3:13093286-13093305 Msa0940550:CDS 45.0%
GAGAATGCTGTAAGATCTGG+TGG + chr6_3:13093455-13093474 Msa0940550:CDS 45.0%
TTAGGTTTCCGCTTCTTAGC+TGG - chr6_3:13093737-13093756 None:intergenic 45.0%
TGCAAAAGTAGAGCTCATGG+AGG + chr6_3:13093799-13093818 Msa0940550:CDS 45.0%
ATCTGACATATCAGAGCCTC+GGG - chr6_3:13094369-13094388 None:intergenic 45.0%
GATCTGACATATCAGAGCCT+CGG - chr6_3:13094370-13094389 None:intergenic 45.0%
!! AGCTCATACCCTTGCTTTTG+TGG + chr6_3:13094460-13094479 Msa0940550:intron 45.0%
CCTTTGGTACCACAAAAGCA+AGG - chr6_3:13094472-13094491 None:intergenic 45.0%
!! CCTTGCTTTTGTGGTACCAA+AGG + chr6_3:13094469-13094488 Msa0940550:intron 45.0%
TATATAGGGGGTGGCGTTTA+AGG + chr6_3:13094514-13094533 Msa0940550:intron 45.0%
CAAAACACAAAGCGGTTCAG+AGG - chr6_3:13094621-13094640 None:intergenic 45.0%
TGACGGTGCAAAACACAAAG+CGG - chr6_3:13094629-13094648 None:intergenic 45.0%
! TTTCCCATTGGGTTGTTGCT+TGG - chr6_3:13094739-13094758 None:intergenic 45.0%
ACTTGGCTGTGTTTCCCATT+GGG - chr6_3:13094750-13094769 None:intergenic 45.0%
GTTGCGTAGCAGTACACAAA+TGG - chr6_3:13094843-13094862 None:intergenic 45.0%
AGTAATGTCTTGCCAGTTCC+TGG - chr6_3:13095787-13095806 None:intergenic 45.0%
TTACTTGCACGTGCAATAGC+AGG + chr6_3:13095802-13095821 Msa0940550:CDS 45.0%
TACTTGCACGTGCAATAGCA+GGG + chr6_3:13095803-13095822 Msa0940550:CDS 45.0%
AACTTGCCTGATTGAGCGTT+TGG - chr6_3:13096014-13096033 None:intergenic 45.0%
GATGTAGTTGCTGACCGAAA+TGG + chr6_3:13096575-13096594 Msa0940550:intron 45.0%
TAGTTGCTGACCGAAATGGA+TGG + chr6_3:13096579-13096598 Msa0940550:intron 45.0%
TACTTTCCTCGAGAAACGAC+CGG - chr6_3:13096682-13096701 None:intergenic 45.0%
TTTCTCCTTCCTTCTTCGTC+AGG - chr6_3:13096717-13096736 None:intergenic 45.0%
GCATTTGAGAGGAGTTCCTT+TGG + chr6_3:13096749-13096768 Msa0940550:CDS 45.0%
TTTGAGAGGAGTTCCTTTGG+AGG + chr6_3:13096752-13096771 Msa0940550:CDS 45.0%
ATGTTAGCATCCTCCTCCAA+AGG - chr6_3:13096768-13096787 None:intergenic 45.0%
TACGAGACCATCAGTAACTG+TGG - chr6_3:13096808-13096827 None:intergenic 45.0%
ACAGTTACTGATGGTCTCGT+AGG + chr6_3:13096807-13096826 Msa0940550:CDS 45.0%
GTCACATAAGCACTTAGGCA+TGG - chr6_3:13097504-13097523 None:intergenic 45.0%
CTTCCACGTTCACTCTTAGT+TGG + chr6_3:13097544-13097563 Msa0940550:intron 45.0%
CTACCTGCAGAGTGCAAATA+TGG - chr6_3:13097700-13097719 None:intergenic 45.0%
AGGTAGTGAAACTGTGGCAA+GGG + chr6_3:13097714-13097733 Msa0940550:intron 45.0%
CCATCAATGATGGCATCCAA+GGG - chr6_3:13097834-13097853 None:intergenic 45.0%
CCTTGGATGCCATCATTGAT+GGG + chr6_3:13097832-13097851 Msa0940550:CDS 45.0%
! GTGGAATCTTGTGGTGGAAG+AGG - chr6_3:13092554-13092573 None:intergenic 50.0%
GATTATGGTAAAGGGGGGAG+TGG + chr6_3:13093023-13093042 Msa0940550:CDS 50.0%
GTAAAGGGGGGAGTGGTAAT+AGG + chr6_3:13093030-13093049 Msa0940550:CDS 50.0%
GGCTCCTCAATCTGTGTTAG+CGG + chr6_3:13093619-13093638 Msa0940550:CDS 50.0%
ATCGCCGCTAACACAGATTG+AGG - chr6_3:13093626-13093645 None:intergenic 50.0%
AATCTGTGTTAGCGGCGATG+AGG + chr6_3:13093627-13093646 Msa0940550:CDS 50.0%
CTGCTAGTCCAGCTAAGAAG+CGG + chr6_3:13093726-13093745 Msa0940550:CDS 50.0%
CACTTGGCTGTGTTTCCCAT+TGG - chr6_3:13094751-13094770 None:intergenic 50.0%
CAATGGGAAACACAGCCAAG+TGG + chr6_3:13094749-13094768 Msa0940550:intron 50.0%
GATGGGCAAAACACTCCAAG+AGG - chr6_3:13094791-13094810 None:intergenic 50.0%
TGAGCACCCCTATATAGGTG+AGG - chr6_3:13094885-13094904 None:intergenic 50.0%
!! GTAGCTTTGCCCCTACCTTT+TGG - chr6_3:13095738-13095757 None:intergenic 50.0%
!! CCTAGAGGAGTGTTGCTTGT+CGG + chr6_3:13095757-13095776 Msa0940550:CDS 50.0%
AATGTCTTGCCAGTTCCTGG+AGG - chr6_3:13095784-13095803 None:intergenic 50.0%
ACTTGCACGTGCAATAGCAG+GGG + chr6_3:13095804-13095823 Msa0940550:CDS 50.0%
GATGAACTTGATGCGGTTGG+TGG + chr6_3:13095955-13095974 Msa0940550:CDS 50.0%
ACTTTCCTCGAGAAACGACC+GGG - chr6_3:13096681-13096700 None:intergenic 50.0%
TCTTCGAGCAGCAAGCAAAG+CGG - chr6_3:13096862-13096881 None:intergenic 50.0%
CTATGGCACAAGCAGTTGTG+AGG + chr6_3:13097286-13097305 Msa0940550:intron 50.0%
TGGCCAACTAAGAGTGAACG+TGG - chr6_3:13097550-13097569 None:intergenic 50.0%
CTCTGCAGGTAGTGAAACTG+TGG + chr6_3:13097708-13097727 Msa0940550:intron 50.0%
CAGGTAGTGAAACTGTGGCA+AGG + chr6_3:13097713-13097732 Msa0940550:intron 50.0%
AGCTTGGTAAGCTGTTCCCT+TGG + chr6_3:13097815-13097834 Msa0940550:CDS 50.0%
CCCTTGGATGCCATCATTGA+TGG + chr6_3:13097831-13097850 Msa0940550:CDS 50.0%
CCCATCAATGATGGCATCCA+AGG - chr6_3:13097835-13097854 None:intergenic 50.0%
TTTCGTTGAGATTGCGGCCG+AGG + chr6_3:13093066-13093085 Msa0940550:CDS 55.0%
TGAGATTGCGGCCGAGGTTA+CGG + chr6_3:13093072-13093091 Msa0940550:CDS 55.0%
GACGAGGTTCGATTCCTGAG+TGG + chr6_3:13093516-13093535 Msa0940550:CDS 55.0%
CTCGTGGAATACTGCCACTC+AGG - chr6_3:13093533-13093552 None:intergenic 55.0%
TCGGCCAAGCAACAACCCAA+TGG + chr6_3:13094732-13094751 Msa0940550:intron 55.0%
CGGCCAAGCAACAACCCAAT+GGG + chr6_3:13094733-13094752 Msa0940550:intron 55.0%
CAAGAGGCCAGCCTTAAGGT+GGG - chr6_3:13094775-13094794 None:intergenic 55.0%
ACTCCAAGAGGCCAGCCTTA+AGG - chr6_3:13094779-13094798 None:intergenic 55.0%
GTTACGGTGGCAGGACAGAT+GGG - chr6_3:13094808-13094827 None:intergenic 55.0%
AGTTACGGTGGCAGGACAGA+TGG - chr6_3:13094809-13094828 None:intergenic 55.0%
GTAGGGGCAAAGCTACCTAG+AGG + chr6_3:13095742-13095761 Msa0940550:CDS 55.0%
CCGACAAGCAACACTCCTCT+AGG - chr6_3:13095760-13095779 None:intergenic 55.0%
ACGGGACCAAACGCTCAATC+AGG + chr6_3:13096005-13096024 Msa0940550:CDS 55.0%
AACTAACCGGCCAGAAGCCT+TGG + chr6_3:13096638-13096657 Msa0940550:CDS 55.0%
GTAGGGGAACCTGACGAAGA+AGG + chr6_3:13096705-13096724 Msa0940550:CDS 55.0%
GGGAACCTGACGAAGAAGGA+AGG + chr6_3:13096709-13096728 Msa0940550:CDS 55.0%
! GAGAGGAGTTCCTTTGGAGG+AGG + chr6_3:13096755-13096774 Msa0940550:CDS 55.0%
! GCTTTGCTTGCTGCTCGAAG+AGG + chr6_3:13096861-13096880 Msa0940550:CDS 55.0%
GGTGTCTGTAGGGAGGCTAA+TGG - chr6_3:13097570-13097589 None:intergenic 55.0%
!! AAGCAGCAGGGGTGTCTGTA+GGG - chr6_3:13097580-13097599 None:intergenic 55.0%
GCGGCCGAGGTTACGGTTAT+TGG + chr6_3:13093079-13093098 Msa0940550:CDS 60.0%
CAGCCAAGTGGCCCACCTTA+AGG + chr6_3:13094761-13094780 Msa0940550:intron 60.0%
CAGCCTTAAGGTGGGCCACT+TGG - chr6_3:13094767-13094786 None:intergenic 60.0%
CAAGTGGCCCACCTTAAGGC+TGG + chr6_3:13094765-13094784 Msa0940550:intron 60.0%
CCAAGAGGCCAGCCTTAAGG+TGG - chr6_3:13094776-13094795 None:intergenic 60.0%
!! CCACCTTAAGGCTGGCCTCT+TGG + chr6_3:13094773-13094792 Msa0940550:intron 60.0%
!! GTGTTGCTTGTCGGTCCTCC+AGG + chr6_3:13095766-13095785 Msa0940550:CDS 60.0%
CTTGTCGGTCCTCCAGGAAC+TGG + chr6_3:13095772-13095791 Msa0940550:CDS 60.0%
CGTGCAATAGCAGGGGAAGC+AGG + chr6_3:13095811-13095830 Msa0940550:CDS 60.0%
CTGGATCCAAGGCTTCTGGC+CGG - chr6_3:13096647-13096666 None:intergenic 60.0%
AGGGCTGGATCCAAGGCTTC+TGG - chr6_3:13096651-13096670 None:intergenic 60.0%
ACGACACAGGGCTGGATCCA+AGG - chr6_3:13096658-13096677 None:intergenic 60.0%
GAAACGACCGGGACGACACA+GGG - chr6_3:13096670-13096689 None:intergenic 60.0%
AGAAACGACCGGGACGACAC+AGG - chr6_3:13096671-13096690 None:intergenic 60.0%
!! GAAGCAGCAGGGGTGTCTGT+AGG - chr6_3:13097581-13097600 None:intergenic 60.0%
AAGGCAGAGGGAAGCAGCAG+GGG - chr6_3:13097591-13097610 None:intergenic 60.0%
GAAGGCAGAGGGAAGCAGCA+GGG - chr6_3:13097592-13097611 None:intergenic 60.0%
TGAAGGCAGAGGGAAGCAGC+AGG - chr6_3:13097593-13097612 None:intergenic 60.0%
!! GATGCGGTTGGTGGCAAGCG+TGG + chr6_3:13095964-13095983 Msa0940550:CDS 65.0%
GATCCAGCCCTGTGTCGTCC+CGG + chr6_3:13096660-13096679 Msa0940550:CDS 65.0%
GTCGTCCCGGTCGTTTCTCG+AGG + chr6_3:13096673-13096692 Msa0940550:CDS 65.0%
!! CAGCAGGGGTGTCTGTAGGG+AGG - chr6_3:13097577-13097596 None:intergenic 65.0%
CGACCGGGACGACACAGGGC+TGG - chr6_3:13096666-13096685 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 13092536 13098134 13092536 ID=Msa0940550;Name=Msa0940550
chr6_3 mRNA 13092536 13098134 13092536 ID=Msa0940550-mRNA-1;Parent=Msa0940550;Name=Msa0940550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=214|0.66|0.5|1|1|1|4|216|632
chr6_3 exon 13092536 13093820 13092536 ID=Msa0940550-mRNA-1:exon:4259;Parent=Msa0940550-mRNA-1
chr6_3 exon 13095703 13096026 13095703 ID=Msa0940550-mRNA-1:exon:4260;Parent=Msa0940550-mRNA-1
chr6_3 exon 13096582 13096882 13096582 ID=Msa0940550-mRNA-1:exon:4261;Parent=Msa0940550-mRNA-1
chr6_3 exon 13097716 13098134 13097716 ID=Msa0940550-mRNA-1:exon:4262;Parent=Msa0940550-mRNA-1
chr6_3 five_prime_UTR 13092536 13092749 13092536 ID=Msa0940550-mRNA-1:five_prime_utr;Parent=Msa0940550-mRNA-1
chr6_3 CDS 13092750 13093820 13092750 ID=Msa0940550-mRNA-1:cds;Parent=Msa0940550-mRNA-1
chr6_3 CDS 13095703 13096026 13095703 ID=Msa0940550-mRNA-1:cds;Parent=Msa0940550-mRNA-1
chr6_3 CDS 13096582 13096882 13096582 ID=Msa0940550-mRNA-1:cds;Parent=Msa0940550-mRNA-1
chr6_3 CDS 13097716 13097918 13097716 ID=Msa0940550-mRNA-1:cds;Parent=Msa0940550-mRNA-1
chr6_3 three_prime_UTR 13097919 13098134 13097919 ID=Msa0940550-mRNA-1:three_prime_utr;Parent=Msa0940550-mRNA-1
Gene Sequence

>Msa0940550

ATGGTTTGTTTTTCTTTACCTTGTTGTACTGGGTCATTTTCGACACCAAATAGGTTAAAAATTAGGAATTTTAGGGTTTATAGAGGTTTATGCACTTCAATGAAGTTTAAGTTTAATCAATGCTATAATTTTGAAAATGGGTTTTTATGGAATAAGAAATTTGAGTATTATGGTAGAAAAAGTAGAAATTTTTCATTGAGGTTTCAACAAAATGGTGTTGGTAATGAAACTGAGCCACTTGTTAGTAGTAGAAGTAGGGATGATAAGAAGAATGATTATGGTAAAGGGGGGAGTGGTAATAGGTTGAAGAAGAGATTTTCGTTGAGATTGCGGCCGAGGTTACGGTTATTGGTTATGAGGATGAAAAGGGCTTCTCTTGAATCTGTTTTGAATGAGGTTGGAGTGTTTGTTAGGAAAAATATTAGGACGGTGGCGTTTGCTACATCGTTTTCGATTGTGTTTACACTTTGTTTTTTGTTTTTGAAGTTTACTTCACTTCGGCCAGTGAAAATTGTTCCGTATTCGGACTTGATTGCGAGTCTTCGAAATGGGAATGTGGAGAAAGTTTTAGTTGAAGAGGGGTCTCGGCGTATATATTATAATACGGTGTCTGAGAATGTTGAAAATGATAAGGTTTCTGATGAAGAAGAATCACAACAAGTAGTAGATGTTTCGATGGATAAGGATATAGACAAGGTTGTGAGTGAGAATGCTGTAAGATCTGGTGGAATTCCTGCATTGAATAAATTGAAGAAATTCTCTAAGAGACGAGGTTCGATTCCTGAGTGGCAGTATTCCACGAGAAAAATAGATCATGACGAAAAATTCCTTCTTAGTTTGATGAGGGAAAAGGGGGTTACATTTAGCTCGGCTCCTCAATCTGTGTTAGCGGCGATGAGGAGTACTTTGATAACTGTGATCACACTGTGGATACCTTTGATTCCTTTGATGTGGCTTATATATCGTCAACTTTCTGCTGCTAGTCCAGCTAAGAAGCGGAAACCTAATAGTCAGACAGTTGGATTTGAAGATGTTCAAGGTGTTGATTCTGCAAAAGTAGAGCTCATGGAGATAGTTTCATGTCTGCAAGGGGATCTTAATTACCAAAAGGTAGGGGCAAAGCTACCTAGAGGAGTGTTGCTTGTCGGTCCTCCAGGAACTGGCAAGACATTACTTGCACGTGCAATAGCAGGGGAAGCAGGTGTACCCTTTTTCACAGTATCTGCCAGTGAGTTCGTTGAAATGTTTGTTGGAAGAGGTGCTGCTAGAGTCAGAGACCTTTTTAGTACAGCAAGGAAATTTGCACCATCAATCATATTCATTGATGAACTTGATGCGGTTGGTGGCAAGCGTGGAAGAAGCTTCAATGATGAACGGGACCAAACGCTCAATCAGTTGCTGACCGAAATGGATGGATTTGAATCAGAAATGAGAGTGGTTGTCATTGCAGCAACTAACCGGCCAGAAGCCTTGGATCCAGCCCTGTGTCGTCCCGGTCGTTTCTCGAGGAAAGTATTTGTAGGGGAACCTGACGAAGAAGGAAGGAGAAAGATATTAGCTGTGCATTTGAGAGGAGTTCCTTTGGAGGAGGATGCTAACATCATATGTCATTTAATTGCCACAGTTACTGATGGTCTCGTAGGTGCTGATCTTGCAAACATCGTCAATGAATCCGCTTTGCTTGCTGCTCGAAGAGGTAGTGAAACTGTGGCAAGGGAAGATATAATGGAAGCTATTGAAAGAGCAAAGTTTGGAATCAATGATAAGCAACTAAGGTCTAGTAAAATAAGCAAGGAGCTTGGTAAGCTGTTCCCTTGGATGCCATCATTGATGGGAAGAAGTGATAGGAAACAAGATGACATACAAGGACCATTAGGTTATCAATCATTGAATTCATGA
Protein sequence

>Msa0940550

MVCFSLPCCTGSFSTPNRLKIRNFRVYRGLCTSMKFKFNQCYNFENGFLWNKKFEYYGRKSRNFSLRFQQNGVGNETEPLVSSRSRDDKKNDYGKGGSGNRLKKRFSLRLRPRLRLLVMRMKRASLESVLNEVGVFVRKNIRTVAFATSFSIVFTLCFLFLKFTSLRPVKIVPYSDLIASLRNGNVEKVLVEEGSRRIYYNTVSENVENDKVSDEEESQQVVDVSMDKDIDKVVSENAVRSGGIPALNKLKKFSKRRGSIPEWQYSTRKIDHDEKFLLSLMREKGVTFSSAPQSVLAAMRSTLITVITLWIPLIPLMWLIYRQLSAASPAKKRKPNSQTVGFEDVQGVDSAKVELMEIVSCLQGDLNYQKVGAKLPRGVLLVGPPGTGKTLLARAIAGEAGVPFFTVSASEFVEMFVGRGAARVRDLFSTARKFAPSIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESEMRVVVIAATNRPEALDPALCRPGRFSRKVFVGEPDEEGRRKILAVHLRGVPLEEDANIICHLIATVTDGLVGADLANIVNESALLAARRGSETVAREDIMEAIERAKFGINDKQLRSSKISKELGKLFPWMPSLMGRSDRKQDDIQGPLGYQSLNS*