Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089710 | sp|Q9C999|PILS2_ARATH | 67.257 | 452 | 139 | 3 | 29 | 480 | 5 | 447 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089710 | G7IAS9 | 97.840 | 463 | 7 | 1 | 22 | 484 | 1 | 460 | 0.0 | 916 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042790 | Msa0089710 | 0.856490 | 3.106095e-62 | -8.615850e-47 |
| Msa0089710 | Msa0148430 | 0.800550 | 1.367443e-48 | -8.615850e-47 |
| Msa0089710 | Msa0178700 | 0.836552 | 8.751007e-57 | -8.615850e-47 |
| Msa0089710 | Msa0388370 | 0.981442 | 1.341689e-152 | -8.615850e-47 |
| Msa0089710 | Msa0431940 | 0.807749 | 4.340971e-50 | -8.615850e-47 |
| Msa0089710 | Msa0714200 | 0.801588 | 8.390202e-49 | -8.615850e-47 |
| Msa0089710 | Msa0734190 | 0.805115 | 1.560079e-49 | -8.615850e-47 |
| Msa0089710 | Msa1031220 | 0.814462 | 1.522125e-51 | -8.615850e-47 |
| Msa0089710 | Msa1274310 | 0.807487 | 4.934740e-50 | -8.615850e-47 |
| Msa0089710 | Msa1356730 | 0.800665 | 1.295256e-48 | -8.615850e-47 |
| Msa0089710 | Msa1368660 | 0.805752 | 1.147198e-49 | -8.615850e-47 |
| Msa0089710 | Msa1459630 | 0.804184 | 2.440306e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089710 | MtrunA17_Chr1g0208491 | 97.840 | 463 | 7 | 1 | 22 | 484 | 1 | 460 | 0.0 | 916 |
| Msa0089710 | MtrunA17_Chr5g0422801 | 75.810 | 463 | 102 | 2 | 22 | 484 | 1 | 453 | 0.0 | 699 |
| Msa0089710 | MtrunA17_Chr7g0245351 | 38.528 | 462 | 232 | 5 | 23 | 481 | 9 | 421 | 1.31e-105 | 321 |
| Msa0089710 | MtrunA17_Chr5g0407621 | 28.140 | 430 | 273 | 6 | 46 | 473 | 13 | 408 | 5.81e-56 | 192 |
| Msa0089710 | MtrunA17_Chr5g0407331 | 28.604 | 437 | 277 | 9 | 40 | 473 | 7 | 411 | 2.94e-54 | 187 |
| Msa0089710 | MtrunA17_Chr8g0369961 | 29.099 | 433 | 252 | 9 | 46 | 473 | 13 | 395 | 7.51e-54 | 186 |
| Msa0089710 | MtrunA17_Chr5g0407321 | 27.069 | 447 | 291 | 9 | 40 | 483 | 7 | 421 | 1.24e-51 | 180 |
| Msa0089710 | MtrunA17_Chr8g0335261 | 25.734 | 443 | 288 | 7 | 43 | 481 | 10 | 415 | 9.01e-46 | 164 |
| Msa0089710 | MtrunA17_Chr8g0335271 | 28.375 | 437 | 262 | 9 | 43 | 473 | 10 | 401 | 3.10e-40 | 149 |
| Msa0089710 | MtrunA17_Chr5g0407271 | 23.799 | 437 | 240 | 8 | 40 | 473 | 7 | 353 | 2.06e-32 | 127 |
| Msa0089710 | MtrunA17_Chr8g0370221 | 26.269 | 335 | 190 | 8 | 150 | 473 | 2 | 290 | 2.87e-29 | 116 |
| Msa0089710 | MtrunA17_Chr5g0407281 | 31.548 | 168 | 114 | 1 | 316 | 483 | 9 | 175 | 2.96e-22 | 93.6 |
| Msa0089710 | MtrunA17_Chr5g0407291 | 28.750 | 160 | 111 | 2 | 40 | 196 | 7 | 166 | 8.33e-19 | 84.0 |
| Msa0089710 | MtrunA17_Chr8g0370211 | 33.333 | 102 | 67 | 1 | 35 | 135 | 2 | 103 | 1.53e-14 | 70.5 |
| Msa0089710 | MtrunA17_Chr5g0407611 | 39.394 | 99 | 59 | 1 | 375 | 473 | 33 | 130 | 1.75e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089710 | AT1G71090.1 | 67.257 | 452 | 139 | 3 | 29 | 480 | 5 | 447 | 0.0 | 599 |
| Msa0089710 | AT5G01990.1 | 39.551 | 445 | 224 | 9 | 40 | 481 | 28 | 430 | 5.10e-106 | 323 |
| Msa0089710 | AT1G76520.1 | 29.724 | 434 | 241 | 9 | 42 | 473 | 10 | 381 | 7.37e-59 | 199 |
| Msa0089710 | AT1G76520.2 | 29.724 | 434 | 241 | 9 | 42 | 473 | 10 | 381 | 7.37e-59 | 199 |
| Msa0089710 | AT2G17500.2 | 26.682 | 446 | 266 | 5 | 40 | 481 | 7 | 395 | 9.62e-56 | 191 |
| Msa0089710 | AT2G17500.1 | 26.682 | 446 | 266 | 5 | 40 | 481 | 7 | 395 | 9.62e-56 | 191 |
| Msa0089710 | AT2G17500.3 | 26.682 | 446 | 266 | 5 | 40 | 481 | 7 | 395 | 9.62e-56 | 191 |
| Msa0089710 | AT2G17500.4 | 26.682 | 446 | 266 | 5 | 40 | 481 | 7 | 395 | 9.62e-56 | 191 |
| Msa0089710 | AT5G65980.1 | 25.721 | 451 | 269 | 7 | 38 | 482 | 5 | 395 | 1.91e-53 | 185 |
| Msa0089710 | AT5G65980.2 | 26.225 | 408 | 235 | 7 | 38 | 439 | 5 | 352 | 1.67e-47 | 168 |
| Msa0089710 | AT1G20925.1 | 37.791 | 172 | 106 | 1 | 302 | 473 | 293 | 463 | 1.20e-28 | 118 |
| Msa0089710 | AT1G20925.1 | 32.919 | 161 | 106 | 1 | 42 | 200 | 97 | 257 | 1.15e-23 | 103 |
| Msa0089710 | AT1G76530.3 | 34.667 | 150 | 96 | 1 | 45 | 192 | 12 | 161 | 1.20e-20 | 93.2 |
| Msa0089710 | AT1G76530.2 | 34.667 | 150 | 96 | 1 | 45 | 192 | 12 | 161 | 3.27e-20 | 93.2 |
| Msa0089710 | AT1G76530.2 | 37.584 | 149 | 87 | 3 | 330 | 473 | 259 | 406 | 1.07e-17 | 85.5 |
| Msa0089710 | AT1G76530.1 | 34.667 | 150 | 96 | 1 | 45 | 192 | 12 | 161 | 3.27e-20 | 93.2 |
| Msa0089710 | AT1G76530.1 | 37.584 | 149 | 87 | 3 | 330 | 473 | 259 | 406 | 1.07e-17 | 85.5 |
Find 77 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGATAGTTTGGAAATTT+TGG | 0.137457 | 1_2:+71366982 | Msa0089710:CDS |
| CCTGATTTCGATTCATTATC+AGG | 0.203290 | 1_2:+71366734 | Msa0089710:CDS |
| CCTTGTGTAATGCTTATATT+AGG | 0.218422 | 1_2:+71367019 | Msa0089710:CDS |
| CTTAAAGATTCTAGCAATAA+AGG | 0.231812 | 1_2:-71366675 | None:intergenic |
| CTTGTTGTGCTTCCTGTTAT+AGG | 0.233061 | 1_2:+71367115 | Msa0089710:CDS |
| CATACTCAAAATACTCCTTT+TGG | 0.244311 | 1_2:+71366407 | Msa0089710:CDS |
| AAGCTTCAGCAGTTCTATTC+TGG | 0.272470 | 1_2:+71367284 | Msa0089710:CDS |
| TTAGGAATTAATTTCATTCT+TGG | 0.273011 | 1_2:-71366110 | None:intergenic |
| ACAATCATAATGACAGGATT+TGG | 0.274474 | 1_2:+71366341 | Msa0089710:CDS |
| GTGCTTCCTGTTATAGGAAT+TGG | 0.292331 | 1_2:+71367121 | Msa0089710:CDS |
| AACCAAGTTCACTAAATATT+AGG | 0.305263 | 1_2:-71366184 | None:intergenic |
| CTTGGAATTAAAACTACAAT+TGG | 0.314458 | 1_2:+71367076 | Msa0089710:CDS |
| TGCTTCCTGTTATAGGAATT+GGG | 0.320264 | 1_2:+71367122 | Msa0089710:CDS |
| AAAATAATCATATGTCTATT+AGG | 0.320538 | 1_2:+71366789 | Msa0089710:CDS |
| AGGAGTTTAAATGTGGCTTT+AGG | 0.328503 | 1_2:-71366128 | None:intergenic |
| TCTTTGTTGGCTATTATCAT+TGG | 0.349134 | 1_2:+71366902 | Msa0089710:CDS |
| CTTGTGTAATGCTTATATTA+GGG | 0.353196 | 1_2:+71367020 | Msa0089710:CDS |
| GTTTCTTTATCTTCAATTCC+AGG | 0.358521 | 1_2:-71366635 | None:intergenic |
| ATTCATATATAGTAATATTC+AGG | 0.358816 | 1_2:+71365769 | Msa0089710:CDS |
| CTTATGTTTCTTTATCTCAA+TGG | 0.364572 | 1_2:+71366456 | Msa0089710:CDS |
| TCATATGTCTATTAGGTGTT+TGG | 0.365120 | 1_2:+71366796 | Msa0089710:CDS |
| ATTCCAAGTGTTGACTCATT+TGG | 0.365792 | 1_2:-71367061 | None:intergenic |
| TAGGAATTAATTTCATTCTT+GGG | 0.365940 | 1_2:-71366109 | None:intergenic |
| TGGCTGAGCCTAGAGTTGTT+AGG | 0.375993 | 1_2:+71366816 | Msa0089710:CDS |
| ACCAACAATTGCATCTTTGT+TGG | 0.380059 | 1_2:+71366889 | Msa0089710:CDS |
| GGTTGAAGTATGTGATGAAT+TGG | 0.402240 | 1_2:-71366866 | None:intergenic |
| GAAATCAGGATCAGGAATAA+TGG | 0.402945 | 1_2:-71366720 | None:intergenic |
| ACAATCCCAATTCCTATAAC+AGG | 0.408237 | 1_2:-71367127 | None:intergenic |
| AATCTTCTCATTGCTGTAGT+TGG | 0.414891 | 1_2:+71366374 | Msa0089710:CDS |
| GGGAGCAATTGCTAGCTTGA+GGG | 0.420113 | 1_2:+71367246 | Msa0089710:CDS |
| GTACTAAGAAGCACATTAAC+TGG | 0.420568 | 1_2:-71366248 | None:intergenic |
| GTGAATCTATTAAACCTTTG+AGG | 0.420872 | 1_2:-71366320 | None:intergenic |
| TTAAAGATTCTAGCAATAAA+GGG | 0.426630 | 1_2:-71366674 | None:intergenic |
| TGCCTAATATTTAGTGAACT+TGG | 0.428326 | 1_2:+71366182 | Msa0089710:CDS |
| CCTGATAATGAATCGAAATC+AGG | 0.429636 | 1_2:-71366734 | None:intergenic |
| TACAGCAATGAGAAGATTAC+CGG | 0.449081 | 1_2:-71366369 | None:intergenic |
| TTAATCTGCCTTCCACTCAT+AGG | 0.452296 | 1_2:+71366071 | Msa0089710:CDS |
| AGGAATTGGGATTGTTGTGT+TGG | 0.466637 | 1_2:+71367135 | Msa0089710:CDS |
| GTGCAAATACAAGTTTACTT+AGG | 0.473864 | 1_2:-71366148 | None:intergenic |
| TTGGAATTAAAACTACAATT+GGG | 0.477581 | 1_2:+71367077 | Msa0089710:CDS |
| TGGGAGCAATTGCTAGCTTG+AGG | 0.481846 | 1_2:+71367245 | Msa0089710:CDS |
| ACAATCTCATAATACTCAAA+AGG | 0.487804 | 1_2:-71366527 | None:intergenic |
| CTTGTAGAAGCTGAGTGGCC+TGG | 0.487906 | 1_2:+71366617 | Msa0089710:CDS |
| GCCAACAAAGATGCAATTGT+TGG | 0.492975 | 1_2:-71366890 | None:intergenic |
| CTTATCCTCCTAACAACTCT+AGG | 0.497949 | 1_2:-71366824 | None:intergenic |
| AATAATGGACGAGGAAATAC+CGG | 0.501207 | 1_2:-71366705 | None:intergenic |
| AATGAATCGAAATCAGGATC+AGG | 0.507261 | 1_2:-71366728 | None:intergenic |
| ATGCTTACTTGGATTCATAG+TGG | 0.542583 | 1_2:+71366280 | Msa0089710:CDS |
| AACTACAATTGGGATAATTG+TGG | 0.546358 | 1_2:+71367087 | Msa0089710:CDS |
| TTCATTATCAGGATCAGTAA+TGG | 0.546971 | 1_2:+71366745 | Msa0089710:CDS |
| GAAGTAGTCCTATGAGTGGA+AGG | 0.554590 | 1_2:-71366079 | None:intergenic |
| ATCTATTAAACCTTTGAGGT+GGG | 0.559127 | 1_2:-71366316 | None:intergenic |
| GGAGCAATTGCTAGCTTGAG+GGG | 0.563569 | 1_2:+71367247 | Msa0089710:CDS |
| AGATTCACAATCATAATGAC+AGG | 0.565619 | 1_2:+71366335 | Msa0089710:CDS |
| CTATATGTCACCCACCTCAA+AGG | 0.567998 | 1_2:+71366306 | Msa0089710:CDS |
| TTGTGTAATGCTTATATTAG+GGG | 0.572998 | 1_2:+71367021 | Msa0089710:CDS |
| CTATCTGTCATAAAAGACAT+TGG | 0.574241 | 1_2:-71366968 | None:intergenic |
| TTTACTTAGGAGTTTAAATG+TGG | 0.575857 | 1_2:-71366135 | None:intergenic |
| GGACCAAATGAGTCAACACT+TGG | 0.581085 | 1_2:+71367058 | Msa0089710:CDS |
| CACTCAGCTTCTACAAGAAG+CGG | 0.586574 | 1_2:-71366611 | None:intergenic |
| ATGAAAATAATGATAAAATG+AGG | 0.590735 | 1_2:+71366003 | Msa0089710:CDS |
| AGGCAGATTAACTTCAACAA+AGG | 0.594814 | 1_2:-71366059 | None:intergenic |
| AACAAAGATGCAATTGTTGG+TGG | 0.598573 | 1_2:-71366887 | None:intergenic |
| GGAAAACAATGCAATGCAAG+AGG | 0.599070 | 1_2:+71366428 | Msa0089710:CDS |
| AATCTATTAAACCTTTGAGG+TGG | 0.609661 | 1_2:-71366317 | None:intergenic |
| TGTGTAATGCTTATATTAGG+GGG | 0.611243 | 1_2:+71367022 | Msa0089710:CDS |
| CTGAGCCTAGAGTTGTTAGG+AGG | 0.617408 | 1_2:+71366819 | Msa0089710:CDS |
| GCTCCCAACAAAATAGCACT+TGG | 0.619409 | 1_2:-71367229 | None:intergenic |
| AGGATCAGTAATGGAGGACG+AGG | 0.622249 | 1_2:+71366754 | Msa0089710:CDS |
| ATCTCATAATACTCAAAAGG+AGG | 0.634016 | 1_2:-71366524 | None:intergenic |
| ATGACAGGATTTGGAAACAC+CGG | 0.646503 | 1_2:+71366350 | Msa0089710:CDS |
| AGGATCAGGAATAATGGACG+AGG | 0.649375 | 1_2:-71366714 | None:intergenic |
| CGCTTCTTGTAGAAGCTGAG+TGG | 0.653516 | 1_2:+71366612 | Msa0089710:CDS |
| AGTTCACTAAATATTAGGCA+AGG | 0.654744 | 1_2:-71366179 | None:intergenic |
| ATTATCAGGATCAGTAATGG+AGG | 0.655209 | 1_2:+71366748 | Msa0089710:CDS |
| GCAAGAAGTAGTCCTATGAG+TGG | 0.663281 | 1_2:-71366083 | None:intergenic |
| CCTAATATAAGCATTACACA+AGG | 0.709180 | 1_2:-71367019 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATATATAGTAATATTC+AGG | + | chr1_2:71365769-71365788 | Msa0089710:CDS | 15.0% |
| !! | ATGAAAATAATGATAAAATG+AGG | + | chr1_2:71366003-71366022 | Msa0089710:CDS | 15.0% |
| !! | AAAATAATCATATGTCTATT+AGG | + | chr1_2:71366789-71366808 | Msa0089710:CDS | 15.0% |
| !! | ATTCATATATAGTAATATTC+AGG | + | chr1_2:71365769-71365788 | Msa0089710:CDS | 15.0% |
| !! | ATGAAAATAATGATAAAATG+AGG | + | chr1_2:71366003-71366022 | Msa0089710:CDS | 15.0% |
| !! | AAAATAATCATATGTCTATT+AGG | + | chr1_2:71366789-71366808 | Msa0089710:CDS | 15.0% |
| !! | TAGGAATTAATTTCATTCTT+GGG | - | chr1_2:71366112-71366131 | None:intergenic | 20.0% |
| !! | TTAGGAATTAATTTCATTCT+TGG | - | chr1_2:71366113-71366132 | None:intergenic | 20.0% |
| !! | TTAAAGATTCTAGCAATAAA+GGG | - | chr1_2:71366677-71366696 | None:intergenic | 20.0% |
| !!! | AAAGAAAAATGTTTTCAACT+GGG | - | chr1_2:71366936-71366955 | None:intergenic | 20.0% |
| !! | TTGGAATTAAAACTACAATT+GGG | + | chr1_2:71367077-71367096 | Msa0089710:CDS | 20.0% |
| !! | TAGGAATTAATTTCATTCTT+GGG | - | chr1_2:71366112-71366131 | None:intergenic | 20.0% |
| !! | TTAGGAATTAATTTCATTCT+TGG | - | chr1_2:71366113-71366132 | None:intergenic | 20.0% |
| !! | TTAAAGATTCTAGCAATAAA+GGG | - | chr1_2:71366677-71366696 | None:intergenic | 20.0% |
| !!! | AAAGAAAAATGTTTTCAACT+GGG | - | chr1_2:71366936-71366955 | None:intergenic | 20.0% |
| !! | TTGGAATTAAAACTACAATT+GGG | + | chr1_2:71367077-71367096 | Msa0089710:CDS | 20.0% |
| ! | CAATATTCATAATCATCACA+TGG | - | chr1_2:71365827-71365846 | None:intergenic | 25.0% |
| ! | CATGTGATGATTATGAATAT+TGG | + | chr1_2:71365825-71365844 | Msa0089710:intron | 25.0% |
| ! | TTTACTTAGGAGTTTAAATG+TGG | - | chr1_2:71366138-71366157 | None:intergenic | 25.0% |
| ! | AACCAAGTTCACTAAATATT+AGG | - | chr1_2:71366187-71366206 | None:intergenic | 25.0% |
| !! | CATTACTCTTGAGAATTTTA+AGG | + | chr1_2:71366211-71366230 | Msa0089710:CDS | 25.0% |
| ! | CTTATGTTTCTTTATCTCAA+TGG | + | chr1_2:71366456-71366475 | Msa0089710:CDS | 25.0% |
| ! | ACAATCTCATAATACTCAAA+AGG | - | chr1_2:71366530-71366549 | None:intergenic | 25.0% |
| ! | CTTAAAGATTCTAGCAATAA+AGG | - | chr1_2:71366678-71366697 | None:intergenic | 25.0% |
| !! | AAGAAAAATGTTTTCAACTG+GGG | - | chr1_2:71366935-71366954 | None:intergenic | 25.0% |
| !! | CAAAGAAAAATGTTTTCAAC+TGG | - | chr1_2:71366937-71366956 | None:intergenic | 25.0% |
| !! | CAGTTGAAAACATTTTTCTT+TGG | + | chr1_2:71366935-71366954 | Msa0089710:CDS | 25.0% |
| ! | CTTGTGTAATGCTTATATTA+GGG | + | chr1_2:71367020-71367039 | Msa0089710:CDS | 25.0% |
| ! | TTGTGTAATGCTTATATTAG+GGG | + | chr1_2:71367021-71367040 | Msa0089710:CDS | 25.0% |
| ! | CTTGGAATTAAAACTACAAT+TGG | + | chr1_2:71367076-71367095 | Msa0089710:CDS | 25.0% |
| ! | CAATATTCATAATCATCACA+TGG | - | chr1_2:71365827-71365846 | None:intergenic | 25.0% |
| ! | CATGTGATGATTATGAATAT+TGG | + | chr1_2:71365825-71365844 | Msa0089710:intron | 25.0% |
| ! | TTTACTTAGGAGTTTAAATG+TGG | - | chr1_2:71366138-71366157 | None:intergenic | 25.0% |
| ! | AACCAAGTTCACTAAATATT+AGG | - | chr1_2:71366187-71366206 | None:intergenic | 25.0% |
| !! | CATTACTCTTGAGAATTTTA+AGG | + | chr1_2:71366211-71366230 | Msa0089710:CDS | 25.0% |
| ! | CTTATGTTTCTTTATCTCAA+TGG | + | chr1_2:71366456-71366475 | Msa0089710:CDS | 25.0% |
| ! | ACAATCTCATAATACTCAAA+AGG | - | chr1_2:71366530-71366549 | None:intergenic | 25.0% |
| ! | CTTAAAGATTCTAGCAATAA+AGG | - | chr1_2:71366678-71366697 | None:intergenic | 25.0% |
| !! | AAGAAAAATGTTTTCAACTG+GGG | - | chr1_2:71366935-71366954 | None:intergenic | 25.0% |
| !! | CAAAGAAAAATGTTTTCAAC+TGG | - | chr1_2:71366937-71366956 | None:intergenic | 25.0% |
| !! | CAGTTGAAAACATTTTTCTT+TGG | + | chr1_2:71366935-71366954 | Msa0089710:CDS | 25.0% |
| ! | CTTGTGTAATGCTTATATTA+GGG | + | chr1_2:71367020-71367039 | Msa0089710:CDS | 25.0% |
| ! | TTGTGTAATGCTTATATTAG+GGG | + | chr1_2:71367021-71367040 | Msa0089710:CDS | 25.0% |
| ! | CTTGGAATTAAAACTACAAT+TGG | + | chr1_2:71367076-71367095 | Msa0089710:CDS | 25.0% |
| TTTCTTATGAACTCAATTGC+AGG | + | chr1_2:71365943-71365962 | Msa0089710:intron | 30.0% | |
| GTGCAAATACAAGTTTACTT+AGG | - | chr1_2:71366151-71366170 | None:intergenic | 30.0% | |
| AGTTCACTAAATATTAGGCA+AGG | - | chr1_2:71366182-71366201 | None:intergenic | 30.0% | |
| TGCCTAATATTTAGTGAACT+TGG | + | chr1_2:71366182-71366201 | Msa0089710:CDS | 30.0% | |
| !! | CTCTTGAGAATTTTAAGGAA+TGG | + | chr1_2:71366216-71366235 | Msa0089710:CDS | 30.0% |
| !! | TTGAGAATTTTAAGGAATGG+TGG | + | chr1_2:71366219-71366238 | Msa0089710:CDS | 30.0% |
| !!! | GTGCTTCTTAGTACATTTTT+TGG | + | chr1_2:71366257-71366276 | Msa0089710:CDS | 30.0% |
| !!! | ACATTTTTTGGATGCTTACT+TGG | + | chr1_2:71366269-71366288 | Msa0089710:CDS | 30.0% |
| !! | ATCTATTAAACCTTTGAGGT+GGG | - | chr1_2:71366319-71366338 | None:intergenic | 30.0% |
| ! | AATCTATTAAACCTTTGAGG+TGG | - | chr1_2:71366320-71366339 | None:intergenic | 30.0% |
| GTGAATCTATTAAACCTTTG+AGG | - | chr1_2:71366323-71366342 | None:intergenic | 30.0% | |
| AGATTCACAATCATAATGAC+AGG | + | chr1_2:71366335-71366354 | Msa0089710:CDS | 30.0% | |
| ACAATCATAATGACAGGATT+TGG | + | chr1_2:71366341-71366360 | Msa0089710:CDS | 30.0% | |
| ! | CATACTCAAAATACTCCTTT+TGG | + | chr1_2:71366407-71366426 | Msa0089710:CDS | 30.0% |
| !! | CACTTTTGTTTATCACATGA+TGG | + | chr1_2:71366499-71366518 | Msa0089710:CDS | 30.0% |
| ATCTCATAATACTCAAAAGG+AGG | - | chr1_2:71366527-71366546 | None:intergenic | 30.0% | |
| GTTTCTTTATCTTCAATTCC+AGG | - | chr1_2:71366638-71366657 | None:intergenic | 30.0% | |
| !! | AGAATCTTTAAGAGCTTTTC+CGG | + | chr1_2:71366686-71366705 | Msa0089710:CDS | 30.0% |
| TTCATTATCAGGATCAGTAA+TGG | + | chr1_2:71366745-71366764 | Msa0089710:CDS | 30.0% | |
| TCATATGTCTATTAGGTGTT+TGG | + | chr1_2:71366796-71366815 | Msa0089710:CDS | 30.0% | |
| ! | TCTTTGTTGGCTATTATCAT+TGG | + | chr1_2:71366902-71366921 | Msa0089710:CDS | 30.0% |
| CTATCTGTCATAAAAGACAT+TGG | - | chr1_2:71366971-71366990 | None:intergenic | 30.0% | |
| ! | GTCTTTTATGACAGATAGTT+TGG | + | chr1_2:71366973-71366992 | Msa0089710:CDS | 30.0% |
| ! | GACAGATAGTTTGGAAATTT+TGG | + | chr1_2:71366982-71367001 | Msa0089710:CDS | 30.0% |
| CCTAATATAAGCATTACACA+AGG | - | chr1_2:71367022-71367041 | None:intergenic | 30.0% | |
| CCTTGTGTAATGCTTATATT+AGG | + | chr1_2:71367019-71367038 | Msa0089710:CDS | 30.0% | |
| TGTGTAATGCTTATATTAGG+GGG | + | chr1_2:71367022-71367041 | Msa0089710:CDS | 30.0% | |
| AACTACAATTGGGATAATTG+TGG | + | chr1_2:71367087-71367106 | Msa0089710:CDS | 30.0% | |
| !!! | GGCTGATAAGTTGAATTTTT+TGG | + | chr1_2:71367156-71367175 | Msa0089710:CDS | 30.0% |
| TTTCTTATGAACTCAATTGC+AGG | + | chr1_2:71365943-71365962 | Msa0089710:intron | 30.0% | |
| GTGCAAATACAAGTTTACTT+AGG | - | chr1_2:71366151-71366170 | None:intergenic | 30.0% | |
| AGTTCACTAAATATTAGGCA+AGG | - | chr1_2:71366182-71366201 | None:intergenic | 30.0% | |
| TGCCTAATATTTAGTGAACT+TGG | + | chr1_2:71366182-71366201 | Msa0089710:CDS | 30.0% | |
| !! | CTCTTGAGAATTTTAAGGAA+TGG | + | chr1_2:71366216-71366235 | Msa0089710:CDS | 30.0% |
| !! | TTGAGAATTTTAAGGAATGG+TGG | + | chr1_2:71366219-71366238 | Msa0089710:CDS | 30.0% |
| !!! | GTGCTTCTTAGTACATTTTT+TGG | + | chr1_2:71366257-71366276 | Msa0089710:CDS | 30.0% |
| !!! | ACATTTTTTGGATGCTTACT+TGG | + | chr1_2:71366269-71366288 | Msa0089710:CDS | 30.0% |
| !! | ATCTATTAAACCTTTGAGGT+GGG | - | chr1_2:71366319-71366338 | None:intergenic | 30.0% |
| ! | AATCTATTAAACCTTTGAGG+TGG | - | chr1_2:71366320-71366339 | None:intergenic | 30.0% |
| GTGAATCTATTAAACCTTTG+AGG | - | chr1_2:71366323-71366342 | None:intergenic | 30.0% | |
| AGATTCACAATCATAATGAC+AGG | + | chr1_2:71366335-71366354 | Msa0089710:CDS | 30.0% | |
| ACAATCATAATGACAGGATT+TGG | + | chr1_2:71366341-71366360 | Msa0089710:CDS | 30.0% | |
| ! | CATACTCAAAATACTCCTTT+TGG | + | chr1_2:71366407-71366426 | Msa0089710:CDS | 30.0% |
| !! | CACTTTTGTTTATCACATGA+TGG | + | chr1_2:71366499-71366518 | Msa0089710:CDS | 30.0% |
| ATCTCATAATACTCAAAAGG+AGG | - | chr1_2:71366527-71366546 | None:intergenic | 30.0% | |
| GTTTCTTTATCTTCAATTCC+AGG | - | chr1_2:71366638-71366657 | None:intergenic | 30.0% | |
| !! | AGAATCTTTAAGAGCTTTTC+CGG | + | chr1_2:71366686-71366705 | Msa0089710:CDS | 30.0% |
| TTCATTATCAGGATCAGTAA+TGG | + | chr1_2:71366745-71366764 | Msa0089710:CDS | 30.0% | |
| TCATATGTCTATTAGGTGTT+TGG | + | chr1_2:71366796-71366815 | Msa0089710:CDS | 30.0% | |
| ! | TCTTTGTTGGCTATTATCAT+TGG | + | chr1_2:71366902-71366921 | Msa0089710:CDS | 30.0% |
| CTATCTGTCATAAAAGACAT+TGG | - | chr1_2:71366971-71366990 | None:intergenic | 30.0% | |
| ! | GTCTTTTATGACAGATAGTT+TGG | + | chr1_2:71366973-71366992 | Msa0089710:CDS | 30.0% |
| ! | GACAGATAGTTTGGAAATTT+TGG | + | chr1_2:71366982-71367001 | Msa0089710:CDS | 30.0% |
| CCTAATATAAGCATTACACA+AGG | - | chr1_2:71367022-71367041 | None:intergenic | 30.0% | |
| CCTTGTGTAATGCTTATATT+AGG | + | chr1_2:71367019-71367038 | Msa0089710:CDS | 30.0% | |
| TGTGTAATGCTTATATTAGG+GGG | + | chr1_2:71367022-71367041 | Msa0089710:CDS | 30.0% | |
| AACTACAATTGGGATAATTG+TGG | + | chr1_2:71367087-71367106 | Msa0089710:CDS | 30.0% | |
| !!! | GGCTGATAAGTTGAATTTTT+TGG | + | chr1_2:71367156-71367175 | Msa0089710:CDS | 30.0% |
| AGGCAGATTAACTTCAACAA+AGG | - | chr1_2:71366062-71366081 | None:intergenic | 35.0% | |
| AGGAGTTTAAATGTGGCTTT+AGG | - | chr1_2:71366131-71366150 | None:intergenic | 35.0% | |
| ! | GTACTAAGAAGCACATTAAC+TGG | - | chr1_2:71366251-71366270 | None:intergenic | 35.0% |
| ATGCTTACTTGGATTCATAG+TGG | + | chr1_2:71366280-71366299 | Msa0089710:CDS | 35.0% | |
| TACAGCAATGAGAAGATTAC+CGG | - | chr1_2:71366372-71366391 | None:intergenic | 35.0% | |
| AATCTTCTCATTGCTGTAGT+TGG | + | chr1_2:71366374-71366393 | Msa0089710:CDS | 35.0% | |
| ! | GCATTGCATTGTTTTCCAAA+AGG | - | chr1_2:71366425-71366444 | None:intergenic | 35.0% |
| !! | AATAATGGACGAGGAAATAC+CGG | - | chr1_2:71366708-71366727 | None:intergenic | 35.0% |
| GAAATCAGGATCAGGAATAA+TGG | - | chr1_2:71366723-71366742 | None:intergenic | 35.0% | |
| AATGAATCGAAATCAGGATC+AGG | - | chr1_2:71366731-71366750 | None:intergenic | 35.0% | |
| ! | CCTGATAATGAATCGAAATC+AGG | - | chr1_2:71366737-71366756 | None:intergenic | 35.0% |
| CCTGATTTCGATTCATTATC+AGG | + | chr1_2:71366734-71366753 | Msa0089710:CDS | 35.0% | |
| ATTATCAGGATCAGTAATGG+AGG | + | chr1_2:71366748-71366767 | Msa0089710:CDS | 35.0% | |
| GGTTGAAGTATGTGATGAAT+TGG | - | chr1_2:71366869-71366888 | None:intergenic | 35.0% | |
| AACAAAGATGCAATTGTTGG+TGG | - | chr1_2:71366890-71366909 | None:intergenic | 35.0% | |
| ACCAACAATTGCATCTTTGT+TGG | + | chr1_2:71366889-71366908 | Msa0089710:CDS | 35.0% | |
| !! | GATAGTTTGGAAATTTTGGC+TGG | + | chr1_2:71366986-71367005 | Msa0089710:CDS | 35.0% |
| !! | ATTCCAAGTGTTGACTCATT+TGG | - | chr1_2:71367064-71367083 | None:intergenic | 35.0% |
| TGCTTCCTGTTATAGGAATT+GGG | + | chr1_2:71367122-71367141 | Msa0089710:CDS | 35.0% | |
| ACAATCCCAATTCCTATAAC+AGG | - | chr1_2:71367130-71367149 | None:intergenic | 35.0% | |
| !!! | AACACCAAGTGCTATTTTGT+TGG | + | chr1_2:71367225-71367244 | Msa0089710:CDS | 35.0% |
| !!! | ACACCAAGTGCTATTTTGTT+GGG | + | chr1_2:71367226-71367245 | Msa0089710:CDS | 35.0% |
| AGGCAGATTAACTTCAACAA+AGG | - | chr1_2:71366062-71366081 | None:intergenic | 35.0% | |
| AGGAGTTTAAATGTGGCTTT+AGG | - | chr1_2:71366131-71366150 | None:intergenic | 35.0% | |
| ! | GTACTAAGAAGCACATTAAC+TGG | - | chr1_2:71366251-71366270 | None:intergenic | 35.0% |
| ATGCTTACTTGGATTCATAG+TGG | + | chr1_2:71366280-71366299 | Msa0089710:CDS | 35.0% | |
| TACAGCAATGAGAAGATTAC+CGG | - | chr1_2:71366372-71366391 | None:intergenic | 35.0% | |
| AATCTTCTCATTGCTGTAGT+TGG | + | chr1_2:71366374-71366393 | Msa0089710:CDS | 35.0% | |
| ! | GCATTGCATTGTTTTCCAAA+AGG | - | chr1_2:71366425-71366444 | None:intergenic | 35.0% |
| !! | AATAATGGACGAGGAAATAC+CGG | - | chr1_2:71366708-71366727 | None:intergenic | 35.0% |
| GAAATCAGGATCAGGAATAA+TGG | - | chr1_2:71366723-71366742 | None:intergenic | 35.0% | |
| AATGAATCGAAATCAGGATC+AGG | - | chr1_2:71366731-71366750 | None:intergenic | 35.0% | |
| ! | CCTGATAATGAATCGAAATC+AGG | - | chr1_2:71366737-71366756 | None:intergenic | 35.0% |
| CCTGATTTCGATTCATTATC+AGG | + | chr1_2:71366734-71366753 | Msa0089710:CDS | 35.0% | |
| ATTATCAGGATCAGTAATGG+AGG | + | chr1_2:71366748-71366767 | Msa0089710:CDS | 35.0% | |
| GGTTGAAGTATGTGATGAAT+TGG | - | chr1_2:71366869-71366888 | None:intergenic | 35.0% | |
| AACAAAGATGCAATTGTTGG+TGG | - | chr1_2:71366890-71366909 | None:intergenic | 35.0% | |
| ACCAACAATTGCATCTTTGT+TGG | + | chr1_2:71366889-71366908 | Msa0089710:CDS | 35.0% | |
| !! | GATAGTTTGGAAATTTTGGC+TGG | + | chr1_2:71366986-71367005 | Msa0089710:CDS | 35.0% |
| !! | ATTCCAAGTGTTGACTCATT+TGG | - | chr1_2:71367064-71367083 | None:intergenic | 35.0% |
| TGCTTCCTGTTATAGGAATT+GGG | + | chr1_2:71367122-71367141 | Msa0089710:CDS | 35.0% | |
| ACAATCCCAATTCCTATAAC+AGG | - | chr1_2:71367130-71367149 | None:intergenic | 35.0% | |
| !!! | AACACCAAGTGCTATTTTGT+TGG | + | chr1_2:71367225-71367244 | Msa0089710:CDS | 35.0% |
| !!! | ACACCAAGTGCTATTTTGTT+GGG | + | chr1_2:71367226-71367245 | Msa0089710:CDS | 35.0% |
| !! | GGTGTTATTGCAATCTACTC+TGG | + | chr1_2:71365846-71365865 | Msa0089710:intron | 40.0% |
| TTAATCTGCCTTCCACTCAT+AGG | + | chr1_2:71366071-71366090 | Msa0089710:CDS | 40.0% | |
| ATGACAGGATTTGGAAACAC+CGG | + | chr1_2:71366350-71366369 | Msa0089710:CDS | 40.0% | |
| GGAAAACAATGCAATGCAAG+AGG | + | chr1_2:71366428-71366447 | Msa0089710:CDS | 40.0% | |
| CTTATCCTCCTAACAACTCT+AGG | - | chr1_2:71366827-71366846 | None:intergenic | 40.0% | |
| GCCAACAAAGATGCAATTGT+TGG | - | chr1_2:71366893-71366912 | None:intergenic | 40.0% | |
| ! | CTTGTTGTGCTTCCTGTTAT+AGG | + | chr1_2:71367115-71367134 | Msa0089710:CDS | 40.0% |
| GTGCTTCCTGTTATAGGAAT+TGG | + | chr1_2:71367121-71367140 | Msa0089710:CDS | 40.0% | |
| AGGAATTGGGATTGTTGTGT+TGG | + | chr1_2:71367135-71367154 | Msa0089710:CDS | 40.0% | |
| AAGCTTCAGCAGTTCTATTC+TGG | + | chr1_2:71367284-71367303 | Msa0089710:CDS | 40.0% | |
| !! | GGTGTTATTGCAATCTACTC+TGG | + | chr1_2:71365846-71365865 | Msa0089710:intron | 40.0% |
| TTAATCTGCCTTCCACTCAT+AGG | + | chr1_2:71366071-71366090 | Msa0089710:CDS | 40.0% | |
| ATGACAGGATTTGGAAACAC+CGG | + | chr1_2:71366350-71366369 | Msa0089710:CDS | 40.0% | |
| GGAAAACAATGCAATGCAAG+AGG | + | chr1_2:71366428-71366447 | Msa0089710:CDS | 40.0% | |
| CTTATCCTCCTAACAACTCT+AGG | - | chr1_2:71366827-71366846 | None:intergenic | 40.0% | |
| GCCAACAAAGATGCAATTGT+TGG | - | chr1_2:71366893-71366912 | None:intergenic | 40.0% | |
| ! | CTTGTTGTGCTTCCTGTTAT+AGG | + | chr1_2:71367115-71367134 | Msa0089710:CDS | 40.0% |
| GTGCTTCCTGTTATAGGAAT+TGG | + | chr1_2:71367121-71367140 | Msa0089710:CDS | 40.0% | |
| AGGAATTGGGATTGTTGTGT+TGG | + | chr1_2:71367135-71367154 | Msa0089710:CDS | 40.0% | |
| AAGCTTCAGCAGTTCTATTC+TGG | + | chr1_2:71367284-71367303 | Msa0089710:CDS | 40.0% | |
| GAAGTAGTCCTATGAGTGGA+AGG | - | chr1_2:71366082-71366101 | None:intergenic | 45.0% | |
| GCAAGAAGTAGTCCTATGAG+TGG | - | chr1_2:71366086-71366105 | None:intergenic | 45.0% | |
| CTATATGTCACCCACCTCAA+AGG | + | chr1_2:71366306-71366325 | Msa0089710:CDS | 45.0% | |
| CACTCAGCTTCTACAAGAAG+CGG | - | chr1_2:71366614-71366633 | None:intergenic | 45.0% | |
| !! | AGGATCAGGAATAATGGACG+AGG | - | chr1_2:71366717-71366736 | None:intergenic | 45.0% |
| !!! | GGAAATTTTGGCTGGTGCAA+TGG | + | chr1_2:71366994-71367013 | Msa0089710:CDS | 45.0% |
| GGACCAAATGAGTCAACACT+TGG | + | chr1_2:71367058-71367077 | Msa0089710:CDS | 45.0% | |
| GCTCCCAACAAAATAGCACT+TGG | - | chr1_2:71367232-71367251 | None:intergenic | 45.0% | |
| GAAGTAGTCCTATGAGTGGA+AGG | - | chr1_2:71366082-71366101 | None:intergenic | 45.0% | |
| GCAAGAAGTAGTCCTATGAG+TGG | - | chr1_2:71366086-71366105 | None:intergenic | 45.0% | |
| CTATATGTCACCCACCTCAA+AGG | + | chr1_2:71366306-71366325 | Msa0089710:CDS | 45.0% | |
| CACTCAGCTTCTACAAGAAG+CGG | - | chr1_2:71366614-71366633 | None:intergenic | 45.0% | |
| !! | AGGATCAGGAATAATGGACG+AGG | - | chr1_2:71366717-71366736 | None:intergenic | 45.0% |
| !!! | GGAAATTTTGGCTGGTGCAA+TGG | + | chr1_2:71366994-71367013 | Msa0089710:CDS | 45.0% |
| GGACCAAATGAGTCAACACT+TGG | + | chr1_2:71367058-71367077 | Msa0089710:CDS | 45.0% | |
| GCTCCCAACAAAATAGCACT+TGG | - | chr1_2:71367232-71367251 | None:intergenic | 45.0% | |
| CGCTTCTTGTAGAAGCTGAG+TGG | + | chr1_2:71366612-71366631 | Msa0089710:CDS | 50.0% | |
| ! | AGGATCAGTAATGGAGGACG+AGG | + | chr1_2:71366754-71366773 | Msa0089710:CDS | 50.0% |
| TGGCTGAGCCTAGAGTTGTT+AGG | + | chr1_2:71366816-71366835 | Msa0089710:CDS | 50.0% | |
| CTGAGCCTAGAGTTGTTAGG+AGG | + | chr1_2:71366819-71366838 | Msa0089710:CDS | 50.0% | |
| ! | TTAGGGGGTATGCTAGCTGA+AGG | + | chr1_2:71367037-71367056 | Msa0089710:CDS | 50.0% |
| ! | TGGGAGCAATTGCTAGCTTG+AGG | + | chr1_2:71367245-71367264 | Msa0089710:CDS | 50.0% |
| ! | GGGAGCAATTGCTAGCTTGA+GGG | + | chr1_2:71367246-71367265 | Msa0089710:CDS | 50.0% |
| ! | GGAGCAATTGCTAGCTTGAG+GGG | + | chr1_2:71367247-71367266 | Msa0089710:CDS | 50.0% |
| CGCTTCTTGTAGAAGCTGAG+TGG | + | chr1_2:71366612-71366631 | Msa0089710:CDS | 50.0% | |
| ! | AGGATCAGTAATGGAGGACG+AGG | + | chr1_2:71366754-71366773 | Msa0089710:CDS | 50.0% |
| TGGCTGAGCCTAGAGTTGTT+AGG | + | chr1_2:71366816-71366835 | Msa0089710:CDS | 50.0% | |
| CTGAGCCTAGAGTTGTTAGG+AGG | + | chr1_2:71366819-71366838 | Msa0089710:CDS | 50.0% | |
| ! | TTAGGGGGTATGCTAGCTGA+AGG | + | chr1_2:71367037-71367056 | Msa0089710:CDS | 50.0% |
| ! | TGGGAGCAATTGCTAGCTTG+AGG | + | chr1_2:71367245-71367264 | Msa0089710:CDS | 50.0% |
| ! | GGGAGCAATTGCTAGCTTGA+GGG | + | chr1_2:71367246-71367265 | Msa0089710:CDS | 50.0% |
| ! | GGAGCAATTGCTAGCTTGAG+GGG | + | chr1_2:71367247-71367266 | Msa0089710:CDS | 50.0% |
| CTTGTAGAAGCTGAGTGGCC+TGG | + | chr1_2:71366617-71366636 | Msa0089710:CDS | 55.0% | |
| CTTGTAGAAGCTGAGTGGCC+TGG | + | chr1_2:71366617-71366636 | Msa0089710:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 71365750 | 71367378 | 71365750 | ID=Msa0089710;Name=Msa0089710 |
| chr1_2 | mRNA | 71365750 | 71367378 | 71365750 | ID=Msa0089710-mRNA-1;Parent=Msa0089710;Name=Msa0089710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|0|0.5|2|0|484 |
| chr1_2 | exon | 71365750 | 71365790 | 71365750 | ID=Msa0089710-mRNA-1:exon:24587;Parent=Msa0089710-mRNA-1 |
| chr1_2 | exon | 71365965 | 71367378 | 71365965 | ID=Msa0089710-mRNA-1:exon:24588;Parent=Msa0089710-mRNA-1 |
| chr1_2 | CDS | 71365750 | 71365790 | 71365750 | ID=Msa0089710-mRNA-1:cds;Parent=Msa0089710-mRNA-1 |
| chr1_2 | CDS | 71365965 | 71367378 | 71365965 | ID=Msa0089710-mRNA-1:cds;Parent=Msa0089710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
