AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0388370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388370 MtrunA17_Chr1g0208491 97.840 463 7 1 47 509 1 460 0.0 918
Msa0388370 MtrunA17_Chr5g0422801 75.810 463 102 2 47 509 1 453 0.0 700
Msa0388370 MtrunA17_Chr7g0245351 38.528 462 232 5 48 506 9 421 1.94e-105 321
Msa0388370 MtrunA17_Chr5g0407621 28.140 430 273 6 71 498 13 408 9.36e-56 192
Msa0388370 MtrunA17_Chr5g0407331 28.604 437 277 9 65 498 7 411 3.25e-54 188
Msa0388370 MtrunA17_Chr8g0369961 29.099 433 252 9 71 498 13 395 1.13e-53 186
Msa0388370 MtrunA17_Chr5g0407321 27.069 447 291 9 65 508 7 421 3.28e-51 180
Msa0388370 MtrunA17_Chr8g0335261 25.734 443 288 7 68 506 10 415 1.49e-45 164
Msa0388370 MtrunA17_Chr8g0335271 28.375 437 262 9 68 498 10 401 4.50e-40 149
Msa0388370 MtrunA17_Chr5g0407271 23.799 437 240 8 65 498 7 353 3.73e-32 126
Msa0388370 MtrunA17_Chr8g0370221 26.269 335 190 8 175 498 2 290 5.15e-29 116
Msa0388370 MtrunA17_Chr5g0407281 31.548 168 114 1 341 508 9 175 3.69e-22 93.6
Msa0388370 MtrunA17_Chr5g0407291 28.750 160 111 2 65 221 7 166 8.50e-19 84.0
Msa0388370 MtrunA17_Chr8g0370211 33.333 102 67 1 60 160 2 103 1.28e-14 70.9
Msa0388370 MtrunA17_Chr5g0407611 39.394 99 59 1 400 498 33 130 6.06e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388370 AT1G71090.1 67.257 452 139 3 54 505 5 447 0.0 600
Msa0388370 AT5G01990.1 39.551 445 224 9 65 506 28 430 1.08e-105 323
Msa0388370 AT1G76520.1 29.724 434 241 9 67 498 10 381 1.43e-58 199
Msa0388370 AT1G76520.2 29.724 434 241 9 67 498 10 381 1.43e-58 199
Msa0388370 AT2G17500.2 26.682 446 266 5 65 506 7 395 1.56e-55 191
Msa0388370 AT2G17500.1 26.682 446 266 5 65 506 7 395 1.56e-55 191
Msa0388370 AT2G17500.3 26.682 446 266 5 65 506 7 395 1.56e-55 191
Msa0388370 AT2G17500.4 26.682 446 266 5 65 506 7 395 1.56e-55 191
Msa0388370 AT5G65980.1 25.721 451 269 7 63 507 5 395 3.17e-53 185
Msa0388370 AT5G65980.2 26.225 408 235 7 63 464 5 352 2.76e-47 168
Msa0388370 AT1G20925.1 37.791 172 106 1 327 498 293 463 1.63e-28 118
Msa0388370 AT1G20925.1 32.919 161 106 1 67 225 97 257 1.42e-23 103
Msa0388370 AT1G76530.3 34.667 150 96 1 70 217 12 161 1.40e-20 93.2
Msa0388370 AT1G76530.2 34.667 150 96 1 70 217 12 161 3.59e-20 93.2
Msa0388370 AT1G76530.2 37.584 149 87 3 355 498 259 406 9.57e-18 85.9
Msa0388370 AT1G76530.1 34.667 150 96 1 70 217 12 161 3.59e-20 93.2
Msa0388370 AT1G76530.1 37.584 149 87 3 355 498 259 406 9.57e-18 85.9

Find 78 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAGATAGTTTGGAAATTT+TGG 0.137457 3_1:-92818043 Msa0388370:CDS
CCTGATTTCGATTCATTATC+AGG 0.203290 3_1:-92818291 Msa0388370:CDS
CCTTGTGTAATGCTTATATT+AGG 0.218422 3_1:-92818006 Msa0388370:CDS
CTTAAAGATTCTAGCAATAA+AGG 0.231812 3_1:+92818350 None:intergenic
CTTGTTGTGCTTCCTGTTAT+AGG 0.233061 3_1:-92817910 Msa0388370:CDS
CATACTCAAAATACTCCTTT+TGG 0.244311 3_1:-92818618 Msa0388370:CDS
AAGCTTCAGCAGTTCTATTC+TGG 0.272470 3_1:-92817741 Msa0388370:CDS
TTAGGAATTAATTTCATTCT+TGG 0.273011 3_1:+92818915 None:intergenic
ACAATCATAATGACAGGATT+TGG 0.274474 3_1:-92818684 Msa0388370:CDS
GTGCTTCCTGTTATAGGAAT+TGG 0.292331 3_1:-92817904 Msa0388370:CDS
AACCAAGTTCACTAAATATT+AGG 0.305263 3_1:+92818841 None:intergenic
CTTGGAATTAAAACTACAAT+TGG 0.314458 3_1:-92817949 Msa0388370:CDS
TGCTTCCTGTTATAGGAATT+GGG 0.320264 3_1:-92817903 Msa0388370:CDS
AAAATAATCATATGTCTATT+AGG 0.320538 3_1:-92818236 Msa0388370:CDS
AGGAGTTTAAATGTGGCTTT+AGG 0.328503 3_1:+92818897 None:intergenic
TCTTTGTTGGCTATTATCAT+TGG 0.349134 3_1:-92818123 Msa0388370:CDS
CTTGTGTAATGCTTATATTA+GGG 0.353196 3_1:-92818005 Msa0388370:CDS
GTTTCTTTATCTTCAATTCC+AGG 0.358521 3_1:+92818390 None:intergenic
ATTCATATATAGTAATATTC+AGG 0.358816 3_1:-92819256 Msa0388370:intron
CTTATGTTTCTTTATCTCAA+TGG 0.364572 3_1:-92818569 Msa0388370:CDS
TCATATGTCTATTAGGTGTT+TGG 0.365120 3_1:-92818229 Msa0388370:CDS
ATTCCAAGTGTTGACTCATT+TGG 0.365792 3_1:+92817964 None:intergenic
TAGGAATTAATTTCATTCTT+GGG 0.365940 3_1:+92818916 None:intergenic
TGGCTGAGCCTAGAGTTGTT+AGG 0.375993 3_1:-92818209 Msa0388370:CDS
ACCAACAATTGCATCTTTGT+TGG 0.380059 3_1:-92818136 Msa0388370:CDS
GGTTGAAGTATGTGATGAAT+TGG 0.402240 3_1:+92818159 None:intergenic
GAAATCAGGATCAGGAATAA+TGG 0.402945 3_1:+92818305 None:intergenic
CGCAACAAAGACTAAAACTA+AGG 0.406647 3_1:+92819282 None:intergenic
ACAATCCCAATTCCTATAAC+AGG 0.408237 3_1:+92817898 None:intergenic
AATCTTCTCATTGCTGTAGT+TGG 0.414891 3_1:-92818651 Msa0388370:CDS
GGGAGCAATTGCTAGCTTGA+GGG 0.420113 3_1:-92817779 Msa0388370:CDS
GTACTAAGAAGCACATTAAC+TGG 0.420568 3_1:+92818777 None:intergenic
GTGAATCTATTAAACCTTTG+AGG 0.420872 3_1:+92818705 None:intergenic
TTAAAGATTCTAGCAATAAA+GGG 0.426630 3_1:+92818351 None:intergenic
TGCCTAATATTTAGTGAACT+TGG 0.428326 3_1:-92818843 Msa0388370:CDS
CCTGATAATGAATCGAAATC+AGG 0.429636 3_1:+92818291 None:intergenic
TACAGCAATGAGAAGATTAC+CGG 0.449081 3_1:+92818656 None:intergenic
TTAATCTGCCTTCCACTCAT+AGG 0.452296 3_1:-92818954 Msa0388370:CDS
AGGAATTGGGATTGTTGTGT+TGG 0.466637 3_1:-92817890 Msa0388370:CDS
GTGCAAATACAAGTTTACTT+AGG 0.473864 3_1:+92818877 None:intergenic
TTGGAATTAAAACTACAATT+GGG 0.477581 3_1:-92817948 Msa0388370:CDS
TGGGAGCAATTGCTAGCTTG+AGG 0.481846 3_1:-92817780 Msa0388370:CDS
ACAATCTCATAATACTCAAA+AGG 0.487804 3_1:+92818498 None:intergenic
CTTGTAGAAGCTGAGTGGCC+TGG 0.487906 3_1:-92818408 Msa0388370:CDS
GCCAACAAAGATGCAATTGT+TGG 0.492975 3_1:+92818135 None:intergenic
CTTATCCTCCTAACAACTCT+AGG 0.497949 3_1:+92818201 None:intergenic
AATAATGGACGAGGAAATAC+CGG 0.501207 3_1:+92818320 None:intergenic
AATGAATCGAAATCAGGATC+AGG 0.507261 3_1:+92818297 None:intergenic
ATGCTTACTTGGATTCATAG+TGG 0.542583 3_1:-92818745 Msa0388370:CDS
AACTACAATTGGGATAATTG+TGG 0.546358 3_1:-92817938 Msa0388370:CDS
TTCATTATCAGGATCAGTAA+TGG 0.546971 3_1:-92818280 Msa0388370:CDS
GAAGTAGTCCTATGAGTGGA+AGG 0.554590 3_1:+92818946 None:intergenic
ATCTATTAAACCTTTGAGGT+GGG 0.559127 3_1:+92818709 None:intergenic
GGAGCAATTGCTAGCTTGAG+GGG 0.563569 3_1:-92817778 Msa0388370:CDS
AGATTCACAATCATAATGAC+AGG 0.565619 3_1:-92818690 Msa0388370:CDS
CTATATGTCACCCACCTCAA+AGG 0.567998 3_1:-92818719 Msa0388370:CDS
TTGTGTAATGCTTATATTAG+GGG 0.572998 3_1:-92818004 Msa0388370:CDS
CTATCTGTCATAAAAGACAT+TGG 0.574241 3_1:+92818057 None:intergenic
TTTACTTAGGAGTTTAAATG+TGG 0.575857 3_1:+92818890 None:intergenic
GGACCAAATGAGTCAACACT+TGG 0.581085 3_1:-92817967 Msa0388370:CDS
CACTCAGCTTCTACAAGAAG+CGG 0.586574 3_1:+92818414 None:intergenic
ATGAAAATAATGATAAAATG+AGG 0.590735 3_1:-92819022 Msa0388370:CDS
AGGCAGATTAACTTCAACAA+AGG 0.594814 3_1:+92818966 None:intergenic
AACAAAGATGCAATTGTTGG+TGG 0.598573 3_1:+92818138 None:intergenic
GGAAAACAATGCAATGCAAG+AGG 0.599070 3_1:-92818597 Msa0388370:CDS
AATCTATTAAACCTTTGAGG+TGG 0.609661 3_1:+92818708 None:intergenic
TGTGTAATGCTTATATTAGG+GGG 0.611243 3_1:-92818003 Msa0388370:CDS
CTGAGCCTAGAGTTGTTAGG+AGG 0.617408 3_1:-92818206 Msa0388370:CDS
GCTCCCAACAAAATAGCACT+TGG 0.619409 3_1:+92817796 None:intergenic
AGGATCAGTAATGGAGGACG+AGG 0.622249 3_1:-92818271 Msa0388370:CDS
ATCTCATAATACTCAAAAGG+AGG 0.634016 3_1:+92818501 None:intergenic
ATGACAGGATTTGGAAACAC+CGG 0.646503 3_1:-92818675 Msa0388370:CDS
AGGATCAGGAATAATGGACG+AGG 0.649375 3_1:+92818311 None:intergenic
CGCTTCTTGTAGAAGCTGAG+TGG 0.653516 3_1:-92818413 Msa0388370:CDS
AGTTCACTAAATATTAGGCA+AGG 0.654744 3_1:+92818846 None:intergenic
ATTATCAGGATCAGTAATGG+AGG 0.655209 3_1:-92818277 Msa0388370:CDS
GCAAGAAGTAGTCCTATGAG+TGG 0.663281 3_1:+92818942 None:intergenic
CCTAATATAAGCATTACACA+AGG 0.709180 3_1:+92818006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATATATAGTAATATTC+AGG - chr3_1:92817763-92817782 Msa0388370:CDS 15.0%
!! ATGAAAATAATGATAAAATG+AGG - chr3_1:92817997-92818016 Msa0388370:CDS 15.0%
!! AAAATAATCATATGTCTATT+AGG - chr3_1:92818783-92818802 Msa0388370:CDS 15.0%
!! ATTCATATATAGTAATATTC+AGG - chr3_1:92817763-92817782 Msa0388370:CDS 15.0%
!! ATGAAAATAATGATAAAATG+AGG - chr3_1:92817997-92818016 Msa0388370:CDS 15.0%
!! AAAATAATCATATGTCTATT+AGG - chr3_1:92818783-92818802 Msa0388370:CDS 15.0%
!! TAGGAATTAATTTCATTCTT+GGG + chr3_1:92818106-92818125 None:intergenic 20.0%
!! TTAGGAATTAATTTCATTCT+TGG + chr3_1:92818107-92818126 None:intergenic 20.0%
!! TTAAAGATTCTAGCAATAAA+GGG + chr3_1:92818671-92818690 None:intergenic 20.0%
!!! AAAGAAAAATGTTTTCAACT+GGG + chr3_1:92818930-92818949 None:intergenic 20.0%
!! TTGGAATTAAAACTACAATT+GGG - chr3_1:92819071-92819090 Msa0388370:intron 20.0%
!! TAGGAATTAATTTCATTCTT+GGG + chr3_1:92818106-92818125 None:intergenic 20.0%
!! TTAGGAATTAATTTCATTCT+TGG + chr3_1:92818107-92818126 None:intergenic 20.0%
!! TTAAAGATTCTAGCAATAAA+GGG + chr3_1:92818671-92818690 None:intergenic 20.0%
!!! AAAGAAAAATGTTTTCAACT+GGG + chr3_1:92818930-92818949 None:intergenic 20.0%
!! TTGGAATTAAAACTACAATT+GGG - chr3_1:92819071-92819090 Msa0388370:intron 20.0%
! CAATATTCATAATCATCACA+TGG + chr3_1:92817821-92817840 None:intergenic 25.0%
! CATGTGATGATTATGAATAT+TGG - chr3_1:92817819-92817838 Msa0388370:CDS 25.0%
! TTTACTTAGGAGTTTAAATG+TGG + chr3_1:92818132-92818151 None:intergenic 25.0%
! AACCAAGTTCACTAAATATT+AGG + chr3_1:92818181-92818200 None:intergenic 25.0%
!! CATTACTCTTGAGAATTTTA+AGG - chr3_1:92818205-92818224 Msa0388370:CDS 25.0%
! CTTATGTTTCTTTATCTCAA+TGG - chr3_1:92818450-92818469 Msa0388370:CDS 25.0%
! ACAATCTCATAATACTCAAA+AGG + chr3_1:92818524-92818543 None:intergenic 25.0%
! CTTAAAGATTCTAGCAATAA+AGG + chr3_1:92818672-92818691 None:intergenic 25.0%
!! AAGAAAAATGTTTTCAACTG+GGG + chr3_1:92818929-92818948 None:intergenic 25.0%
!! CAAAGAAAAATGTTTTCAAC+TGG + chr3_1:92818931-92818950 None:intergenic 25.0%
!! CAGTTGAAAACATTTTTCTT+TGG - chr3_1:92818929-92818948 Msa0388370:CDS 25.0%
! CTTGTGTAATGCTTATATTA+GGG - chr3_1:92819014-92819033 Msa0388370:CDS 25.0%
! TTGTGTAATGCTTATATTAG+GGG - chr3_1:92819015-92819034 Msa0388370:CDS 25.0%
! CTTGGAATTAAAACTACAAT+TGG - chr3_1:92819070-92819089 Msa0388370:intron 25.0%
! CAATATTCATAATCATCACA+TGG + chr3_1:92817821-92817840 None:intergenic 25.0%
! CATGTGATGATTATGAATAT+TGG - chr3_1:92817819-92817838 Msa0388370:CDS 25.0%
! TTTACTTAGGAGTTTAAATG+TGG + chr3_1:92818132-92818151 None:intergenic 25.0%
! AACCAAGTTCACTAAATATT+AGG + chr3_1:92818181-92818200 None:intergenic 25.0%
!! CATTACTCTTGAGAATTTTA+AGG - chr3_1:92818205-92818224 Msa0388370:CDS 25.0%
! CTTATGTTTCTTTATCTCAA+TGG - chr3_1:92818450-92818469 Msa0388370:CDS 25.0%
! ACAATCTCATAATACTCAAA+AGG + chr3_1:92818524-92818543 None:intergenic 25.0%
! CTTAAAGATTCTAGCAATAA+AGG + chr3_1:92818672-92818691 None:intergenic 25.0%
!! AAGAAAAATGTTTTCAACTG+GGG + chr3_1:92818929-92818948 None:intergenic 25.0%
!! CAAAGAAAAATGTTTTCAAC+TGG + chr3_1:92818931-92818950 None:intergenic 25.0%
!! CAGTTGAAAACATTTTTCTT+TGG - chr3_1:92818929-92818948 Msa0388370:CDS 25.0%
! CTTGTGTAATGCTTATATTA+GGG - chr3_1:92819014-92819033 Msa0388370:CDS 25.0%
! TTGTGTAATGCTTATATTAG+GGG - chr3_1:92819015-92819034 Msa0388370:CDS 25.0%
! CTTGGAATTAAAACTACAAT+TGG - chr3_1:92819070-92819089 Msa0388370:intron 25.0%
!!! CTTAGTTTTAGTCTTTGTTG+CGG - chr3_1:92817738-92817757 Msa0388370:CDS 30.0%
!!! TTAGTTTTAGTCTTTGTTGC+GGG - chr3_1:92817739-92817758 Msa0388370:CDS 30.0%
TTTCTTATGAACTCAATTGC+AGG - chr3_1:92817937-92817956 Msa0388370:CDS 30.0%
GTGCAAATACAAGTTTACTT+AGG + chr3_1:92818145-92818164 None:intergenic 30.0%
AGTTCACTAAATATTAGGCA+AGG + chr3_1:92818176-92818195 None:intergenic 30.0%
TGCCTAATATTTAGTGAACT+TGG - chr3_1:92818176-92818195 Msa0388370:CDS 30.0%
!! CTCTTGAGAATTTTAAGGAA+TGG - chr3_1:92818210-92818229 Msa0388370:CDS 30.0%
!! TTGAGAATTTTAAGGAATGG+TGG - chr3_1:92818213-92818232 Msa0388370:CDS 30.0%
!!! GTGCTTCTTAGTACATTTTT+TGG - chr3_1:92818251-92818270 Msa0388370:CDS 30.0%
!!! ACATTTTTTGGATGCTTACT+TGG - chr3_1:92818263-92818282 Msa0388370:CDS 30.0%
!! ATCTATTAAACCTTTGAGGT+GGG + chr3_1:92818313-92818332 None:intergenic 30.0%
! AATCTATTAAACCTTTGAGG+TGG + chr3_1:92818314-92818333 None:intergenic 30.0%
GTGAATCTATTAAACCTTTG+AGG + chr3_1:92818317-92818336 None:intergenic 30.0%
AGATTCACAATCATAATGAC+AGG - chr3_1:92818329-92818348 Msa0388370:CDS 30.0%
ACAATCATAATGACAGGATT+TGG - chr3_1:92818335-92818354 Msa0388370:CDS 30.0%
! CATACTCAAAATACTCCTTT+TGG - chr3_1:92818401-92818420 Msa0388370:CDS 30.0%
!! CACTTTTGTTTATCACATGA+TGG - chr3_1:92818493-92818512 Msa0388370:CDS 30.0%
ATCTCATAATACTCAAAAGG+AGG + chr3_1:92818521-92818540 None:intergenic 30.0%
GTTTCTTTATCTTCAATTCC+AGG + chr3_1:92818632-92818651 None:intergenic 30.0%
!! AGAATCTTTAAGAGCTTTTC+CGG - chr3_1:92818680-92818699 Msa0388370:CDS 30.0%
TTCATTATCAGGATCAGTAA+TGG - chr3_1:92818739-92818758 Msa0388370:CDS 30.0%
TCATATGTCTATTAGGTGTT+TGG - chr3_1:92818790-92818809 Msa0388370:CDS 30.0%
! TCTTTGTTGGCTATTATCAT+TGG - chr3_1:92818896-92818915 Msa0388370:CDS 30.0%
CTATCTGTCATAAAAGACAT+TGG + chr3_1:92818965-92818984 None:intergenic 30.0%
! GTCTTTTATGACAGATAGTT+TGG - chr3_1:92818967-92818986 Msa0388370:CDS 30.0%
! GACAGATAGTTTGGAAATTT+TGG - chr3_1:92818976-92818995 Msa0388370:CDS 30.0%
CCTAATATAAGCATTACACA+AGG + chr3_1:92819016-92819035 None:intergenic 30.0%
CCTTGTGTAATGCTTATATT+AGG - chr3_1:92819013-92819032 Msa0388370:CDS 30.0%
TGTGTAATGCTTATATTAGG+GGG - chr3_1:92819016-92819035 Msa0388370:CDS 30.0%
AACTACAATTGGGATAATTG+TGG - chr3_1:92819081-92819100 Msa0388370:intron 30.0%
!!! GGCTGATAAGTTGAATTTTT+TGG - chr3_1:92819150-92819169 Msa0388370:intron 30.0%
!!! CTTAGTTTTAGTCTTTGTTG+CGG - chr3_1:92817738-92817757 Msa0388370:CDS 30.0%
!!! TTAGTTTTAGTCTTTGTTGC+GGG - chr3_1:92817739-92817758 Msa0388370:CDS 30.0%
TTTCTTATGAACTCAATTGC+AGG - chr3_1:92817937-92817956 Msa0388370:CDS 30.0%
GTGCAAATACAAGTTTACTT+AGG + chr3_1:92818145-92818164 None:intergenic 30.0%
AGTTCACTAAATATTAGGCA+AGG + chr3_1:92818176-92818195 None:intergenic 30.0%
TGCCTAATATTTAGTGAACT+TGG - chr3_1:92818176-92818195 Msa0388370:CDS 30.0%
!! CTCTTGAGAATTTTAAGGAA+TGG - chr3_1:92818210-92818229 Msa0388370:CDS 30.0%
!! TTGAGAATTTTAAGGAATGG+TGG - chr3_1:92818213-92818232 Msa0388370:CDS 30.0%
!!! GTGCTTCTTAGTACATTTTT+TGG - chr3_1:92818251-92818270 Msa0388370:CDS 30.0%
!!! ACATTTTTTGGATGCTTACT+TGG - chr3_1:92818263-92818282 Msa0388370:CDS 30.0%
!! ATCTATTAAACCTTTGAGGT+GGG + chr3_1:92818313-92818332 None:intergenic 30.0%
! AATCTATTAAACCTTTGAGG+TGG + chr3_1:92818314-92818333 None:intergenic 30.0%
GTGAATCTATTAAACCTTTG+AGG + chr3_1:92818317-92818336 None:intergenic 30.0%
AGATTCACAATCATAATGAC+AGG - chr3_1:92818329-92818348 Msa0388370:CDS 30.0%
ACAATCATAATGACAGGATT+TGG - chr3_1:92818335-92818354 Msa0388370:CDS 30.0%
! CATACTCAAAATACTCCTTT+TGG - chr3_1:92818401-92818420 Msa0388370:CDS 30.0%
!! CACTTTTGTTTATCACATGA+TGG - chr3_1:92818493-92818512 Msa0388370:CDS 30.0%
ATCTCATAATACTCAAAAGG+AGG + chr3_1:92818521-92818540 None:intergenic 30.0%
GTTTCTTTATCTTCAATTCC+AGG + chr3_1:92818632-92818651 None:intergenic 30.0%
!! AGAATCTTTAAGAGCTTTTC+CGG - chr3_1:92818680-92818699 Msa0388370:CDS 30.0%
TTCATTATCAGGATCAGTAA+TGG - chr3_1:92818739-92818758 Msa0388370:CDS 30.0%
TCATATGTCTATTAGGTGTT+TGG - chr3_1:92818790-92818809 Msa0388370:CDS 30.0%
! TCTTTGTTGGCTATTATCAT+TGG - chr3_1:92818896-92818915 Msa0388370:CDS 30.0%
CTATCTGTCATAAAAGACAT+TGG + chr3_1:92818965-92818984 None:intergenic 30.0%
! GTCTTTTATGACAGATAGTT+TGG - chr3_1:92818967-92818986 Msa0388370:CDS 30.0%
! GACAGATAGTTTGGAAATTT+TGG - chr3_1:92818976-92818995 Msa0388370:CDS 30.0%
CCTAATATAAGCATTACACA+AGG + chr3_1:92819016-92819035 None:intergenic 30.0%
CCTTGTGTAATGCTTATATT+AGG - chr3_1:92819013-92819032 Msa0388370:CDS 30.0%
TGTGTAATGCTTATATTAGG+GGG - chr3_1:92819016-92819035 Msa0388370:CDS 30.0%
AACTACAATTGGGATAATTG+TGG - chr3_1:92819081-92819100 Msa0388370:intron 30.0%
!!! GGCTGATAAGTTGAATTTTT+TGG - chr3_1:92819150-92819169 Msa0388370:intron 30.0%
CGCAACAAAGACTAAAACTA+AGG + chr3_1:92817740-92817759 None:intergenic 35.0%
AGGCAGATTAACTTCAACAA+AGG + chr3_1:92818056-92818075 None:intergenic 35.0%
AGGAGTTTAAATGTGGCTTT+AGG + chr3_1:92818125-92818144 None:intergenic 35.0%
! GTACTAAGAAGCACATTAAC+TGG + chr3_1:92818245-92818264 None:intergenic 35.0%
ATGCTTACTTGGATTCATAG+TGG - chr3_1:92818274-92818293 Msa0388370:CDS 35.0%
TACAGCAATGAGAAGATTAC+CGG + chr3_1:92818366-92818385 None:intergenic 35.0%
AATCTTCTCATTGCTGTAGT+TGG - chr3_1:92818368-92818387 Msa0388370:CDS 35.0%
! GCATTGCATTGTTTTCCAAA+AGG + chr3_1:92818419-92818438 None:intergenic 35.0%
!! AATAATGGACGAGGAAATAC+CGG + chr3_1:92818702-92818721 None:intergenic 35.0%
GAAATCAGGATCAGGAATAA+TGG + chr3_1:92818717-92818736 None:intergenic 35.0%
AATGAATCGAAATCAGGATC+AGG + chr3_1:92818725-92818744 None:intergenic 35.0%
! CCTGATAATGAATCGAAATC+AGG + chr3_1:92818731-92818750 None:intergenic 35.0%
CCTGATTTCGATTCATTATC+AGG - chr3_1:92818728-92818747 Msa0388370:CDS 35.0%
ATTATCAGGATCAGTAATGG+AGG - chr3_1:92818742-92818761 Msa0388370:CDS 35.0%
GGTTGAAGTATGTGATGAAT+TGG + chr3_1:92818863-92818882 None:intergenic 35.0%
AACAAAGATGCAATTGTTGG+TGG + chr3_1:92818884-92818903 None:intergenic 35.0%
ACCAACAATTGCATCTTTGT+TGG - chr3_1:92818883-92818902 Msa0388370:CDS 35.0%
!! GATAGTTTGGAAATTTTGGC+TGG - chr3_1:92818980-92818999 Msa0388370:CDS 35.0%
!! ATTCCAAGTGTTGACTCATT+TGG + chr3_1:92819058-92819077 None:intergenic 35.0%
TGCTTCCTGTTATAGGAATT+GGG - chr3_1:92819116-92819135 Msa0388370:intron 35.0%
ACAATCCCAATTCCTATAAC+AGG + chr3_1:92819124-92819143 None:intergenic 35.0%
!!! AACACCAAGTGCTATTTTGT+TGG - chr3_1:92819219-92819238 Msa0388370:intron 35.0%
!!! ACACCAAGTGCTATTTTGTT+GGG - chr3_1:92819220-92819239 Msa0388370:intron 35.0%
CGCAACAAAGACTAAAACTA+AGG + chr3_1:92817740-92817759 None:intergenic 35.0%
AGGCAGATTAACTTCAACAA+AGG + chr3_1:92818056-92818075 None:intergenic 35.0%
AGGAGTTTAAATGTGGCTTT+AGG + chr3_1:92818125-92818144 None:intergenic 35.0%
! GTACTAAGAAGCACATTAAC+TGG + chr3_1:92818245-92818264 None:intergenic 35.0%
ATGCTTACTTGGATTCATAG+TGG - chr3_1:92818274-92818293 Msa0388370:CDS 35.0%
TACAGCAATGAGAAGATTAC+CGG + chr3_1:92818366-92818385 None:intergenic 35.0%
AATCTTCTCATTGCTGTAGT+TGG - chr3_1:92818368-92818387 Msa0388370:CDS 35.0%
! GCATTGCATTGTTTTCCAAA+AGG + chr3_1:92818419-92818438 None:intergenic 35.0%
!! AATAATGGACGAGGAAATAC+CGG + chr3_1:92818702-92818721 None:intergenic 35.0%
GAAATCAGGATCAGGAATAA+TGG + chr3_1:92818717-92818736 None:intergenic 35.0%
AATGAATCGAAATCAGGATC+AGG + chr3_1:92818725-92818744 None:intergenic 35.0%
! CCTGATAATGAATCGAAATC+AGG + chr3_1:92818731-92818750 None:intergenic 35.0%
CCTGATTTCGATTCATTATC+AGG - chr3_1:92818728-92818747 Msa0388370:CDS 35.0%
ATTATCAGGATCAGTAATGG+AGG - chr3_1:92818742-92818761 Msa0388370:CDS 35.0%
GGTTGAAGTATGTGATGAAT+TGG + chr3_1:92818863-92818882 None:intergenic 35.0%
AACAAAGATGCAATTGTTGG+TGG + chr3_1:92818884-92818903 None:intergenic 35.0%
ACCAACAATTGCATCTTTGT+TGG - chr3_1:92818883-92818902 Msa0388370:CDS 35.0%
!! GATAGTTTGGAAATTTTGGC+TGG - chr3_1:92818980-92818999 Msa0388370:CDS 35.0%
!! ATTCCAAGTGTTGACTCATT+TGG + chr3_1:92819058-92819077 None:intergenic 35.0%
TGCTTCCTGTTATAGGAATT+GGG - chr3_1:92819116-92819135 Msa0388370:intron 35.0%
ACAATCCCAATTCCTATAAC+AGG + chr3_1:92819124-92819143 None:intergenic 35.0%
!!! AACACCAAGTGCTATTTTGT+TGG - chr3_1:92819219-92819238 Msa0388370:intron 35.0%
!!! ACACCAAGTGCTATTTTGTT+GGG - chr3_1:92819220-92819239 Msa0388370:intron 35.0%
!! GGTGTTATTGCAATCTACTC+TGG - chr3_1:92817840-92817859 Msa0388370:CDS 40.0%
TTAATCTGCCTTCCACTCAT+AGG - chr3_1:92818065-92818084 Msa0388370:CDS 40.0%
ATGACAGGATTTGGAAACAC+CGG - chr3_1:92818344-92818363 Msa0388370:CDS 40.0%
GGAAAACAATGCAATGCAAG+AGG - chr3_1:92818422-92818441 Msa0388370:CDS 40.0%
CTTATCCTCCTAACAACTCT+AGG + chr3_1:92818821-92818840 None:intergenic 40.0%
GCCAACAAAGATGCAATTGT+TGG + chr3_1:92818887-92818906 None:intergenic 40.0%
! CTTGTTGTGCTTCCTGTTAT+AGG - chr3_1:92819109-92819128 Msa0388370:intron 40.0%
GTGCTTCCTGTTATAGGAAT+TGG - chr3_1:92819115-92819134 Msa0388370:intron 40.0%
AGGAATTGGGATTGTTGTGT+TGG - chr3_1:92819129-92819148 Msa0388370:intron 40.0%
AAGCTTCAGCAGTTCTATTC+TGG - chr3_1:92819278-92819297 Msa0388370:CDS 40.0%
!! GGTGTTATTGCAATCTACTC+TGG - chr3_1:92817840-92817859 Msa0388370:CDS 40.0%
TTAATCTGCCTTCCACTCAT+AGG - chr3_1:92818065-92818084 Msa0388370:CDS 40.0%
ATGACAGGATTTGGAAACAC+CGG - chr3_1:92818344-92818363 Msa0388370:CDS 40.0%
GGAAAACAATGCAATGCAAG+AGG - chr3_1:92818422-92818441 Msa0388370:CDS 40.0%
CTTATCCTCCTAACAACTCT+AGG + chr3_1:92818821-92818840 None:intergenic 40.0%
GCCAACAAAGATGCAATTGT+TGG + chr3_1:92818887-92818906 None:intergenic 40.0%
! CTTGTTGTGCTTCCTGTTAT+AGG - chr3_1:92819109-92819128 Msa0388370:intron 40.0%
GTGCTTCCTGTTATAGGAAT+TGG - chr3_1:92819115-92819134 Msa0388370:intron 40.0%
AGGAATTGGGATTGTTGTGT+TGG - chr3_1:92819129-92819148 Msa0388370:intron 40.0%
AAGCTTCAGCAGTTCTATTC+TGG - chr3_1:92819278-92819297 Msa0388370:CDS 40.0%
GAAGTAGTCCTATGAGTGGA+AGG + chr3_1:92818076-92818095 None:intergenic 45.0%
GCAAGAAGTAGTCCTATGAG+TGG + chr3_1:92818080-92818099 None:intergenic 45.0%
CTATATGTCACCCACCTCAA+AGG - chr3_1:92818300-92818319 Msa0388370:CDS 45.0%
CACTCAGCTTCTACAAGAAG+CGG + chr3_1:92818608-92818627 None:intergenic 45.0%
!! AGGATCAGGAATAATGGACG+AGG + chr3_1:92818711-92818730 None:intergenic 45.0%
!!! GGAAATTTTGGCTGGTGCAA+TGG - chr3_1:92818988-92819007 Msa0388370:CDS 45.0%
GGACCAAATGAGTCAACACT+TGG - chr3_1:92819052-92819071 Msa0388370:CDS 45.0%
GCTCCCAACAAAATAGCACT+TGG + chr3_1:92819226-92819245 None:intergenic 45.0%
GAAGTAGTCCTATGAGTGGA+AGG + chr3_1:92818076-92818095 None:intergenic 45.0%
GCAAGAAGTAGTCCTATGAG+TGG + chr3_1:92818080-92818099 None:intergenic 45.0%
CTATATGTCACCCACCTCAA+AGG - chr3_1:92818300-92818319 Msa0388370:CDS 45.0%
CACTCAGCTTCTACAAGAAG+CGG + chr3_1:92818608-92818627 None:intergenic 45.0%
!! AGGATCAGGAATAATGGACG+AGG + chr3_1:92818711-92818730 None:intergenic 45.0%
!!! GGAAATTTTGGCTGGTGCAA+TGG - chr3_1:92818988-92819007 Msa0388370:CDS 45.0%
GGACCAAATGAGTCAACACT+TGG - chr3_1:92819052-92819071 Msa0388370:CDS 45.0%
GCTCCCAACAAAATAGCACT+TGG + chr3_1:92819226-92819245 None:intergenic 45.0%
CGCTTCTTGTAGAAGCTGAG+TGG - chr3_1:92818606-92818625 Msa0388370:CDS 50.0%
! AGGATCAGTAATGGAGGACG+AGG - chr3_1:92818748-92818767 Msa0388370:CDS 50.0%
TGGCTGAGCCTAGAGTTGTT+AGG - chr3_1:92818810-92818829 Msa0388370:CDS 50.0%
CTGAGCCTAGAGTTGTTAGG+AGG - chr3_1:92818813-92818832 Msa0388370:CDS 50.0%
! TTAGGGGGTATGCTAGCTGA+AGG - chr3_1:92819031-92819050 Msa0388370:CDS 50.0%
! TGGGAGCAATTGCTAGCTTG+AGG - chr3_1:92819239-92819258 Msa0388370:intron 50.0%
! GGGAGCAATTGCTAGCTTGA+GGG - chr3_1:92819240-92819259 Msa0388370:intron 50.0%
! GGAGCAATTGCTAGCTTGAG+GGG - chr3_1:92819241-92819260 Msa0388370:intron 50.0%
CGCTTCTTGTAGAAGCTGAG+TGG - chr3_1:92818606-92818625 Msa0388370:CDS 50.0%
! AGGATCAGTAATGGAGGACG+AGG - chr3_1:92818748-92818767 Msa0388370:CDS 50.0%
TGGCTGAGCCTAGAGTTGTT+AGG - chr3_1:92818810-92818829 Msa0388370:CDS 50.0%
CTGAGCCTAGAGTTGTTAGG+AGG - chr3_1:92818813-92818832 Msa0388370:CDS 50.0%
! TTAGGGGGTATGCTAGCTGA+AGG - chr3_1:92819031-92819050 Msa0388370:CDS 50.0%
! TGGGAGCAATTGCTAGCTTG+AGG - chr3_1:92819239-92819258 Msa0388370:intron 50.0%
! GGGAGCAATTGCTAGCTTGA+GGG - chr3_1:92819240-92819259 Msa0388370:intron 50.0%
! GGAGCAATTGCTAGCTTGAG+GGG - chr3_1:92819241-92819260 Msa0388370:intron 50.0%
CTTGTAGAAGCTGAGTGGCC+TGG - chr3_1:92818611-92818630 Msa0388370:CDS 55.0%
CTTGTAGAAGCTGAGTGGCC+TGG - chr3_1:92818611-92818630 Msa0388370:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 92817669 92819372 92817669 ID=Msa0388370;Name=Msa0388370
chr3_1 mRNA 92817669 92819372 92817669 ID=Msa0388370-mRNA-1;Parent=Msa0388370;Name=Msa0388370-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|0|0.5|2|0|509
chr3_1 exon 92819257 92819372 92819257 ID=Msa0388370-mRNA-1:exon:26122;Parent=Msa0388370-mRNA-1
chr3_1 exon 92817669 92819082 92817669 ID=Msa0388370-mRNA-1:exon:26121;Parent=Msa0388370-mRNA-1
chr3_1 CDS 92819257 92819372 92819257 ID=Msa0388370-mRNA-1:cds;Parent=Msa0388370-mRNA-1
chr3_1 CDS 92817669 92819082 92817669 ID=Msa0388370-mRNA-1:cds;Parent=Msa0388370-mRNA-1
Gene Sequence

>Msa0388370

ATGCTATATATAGTATATGTTACATGTACATGCTCAAAGTCTTACTATCTTAAACTTATCACAATCATCCTTAGTTTTAGTCTTTGTTGCGGGAATTCATATATAGTAATATTCAGGAGATTTTGTTATTCTTCAGTCATGTTAGAAGATTTGCATGAAAATAATGATAAAATGAGGTCTCACAGTGAAGACATTAGAACTGCTCTGCAGCCTTTGTTGAAGTTAATCTGCCTTCCACTCATAGGACTACTTCTTGCAAACCCAAGAATGAAATTAATTCCTAAAGCCACATTTAAACTCCTAAGTAAACTTGTATTTGCACTATTTTTACCTTGCCTAATATTTAGTGAACTTGGTTCAAGCATTACTCTTGAGAATTTTAAGGAATGGTGGTTCATACCAGTTAATGTGCTTCTTAGTACATTTTTTGGATGCTTACTTGGATTCATAGTGGTTACTATATGTCACCCACCTCAAAGGTTTAATAGATTCACAATCATAATGACAGGATTTGGAAACACCGGTAATCTTCTCATTGCTGTAGTTGGATCTGTTTGTCATACTCAAAATACTCCTTTTGGAAAACAATGCAATGCAAGAGGTGTAGCTTATGTTTCTTTATCTCAATGGATTTCTGTGATTCTTGTTTACACTTTTGTTTATCACATGATGGAACCTCCTTTTGAGTATTATGAGATTGTTGAAAATGAAGCTGAAATTAGAGAAGAACAAGAAGAAACAATACTTAACGATATTAGTAGACCGCTTCTTGTAGAAGCTGAGTGGCCTGGAATTGAAGATAAAGAAACTCAACATTCTAAGACACCCTTTATTGCTAGAATCTTTAAGAGCTTTTCCGGTATTTCCTCGTCCATTATTCCTGATCCTGATTTCGATTCATTATCAGGATCAGTAATGGAGGACGAGGAAGAAAGTAGTGAAAATAATCATATGTCTATTAGGTGTTTGGCTGAGCCTAGAGTTGTTAGGAGGATAAGAATTGTTGCTGAACAAACTCCAATTCATCACATACTTCAACCACCAACAATTGCATCTTTGTTGGCTATTATCATTGGAACAGTGCCCCAGTTGAAAACATTTTTCTTTGGAAATGATGCACCAATGTCTTTTATGACAGATAGTTTGGAAATTTTGGCTGGTGCAATGGTGCCTTGTGTAATGCTTATATTAGGGGGTATGCTAGCTGAAGGACCAAATGAGTCAACACTTGGAATTAAAACTACAATTGGGATAATTGTGGCAAGACTTGTTGTGCTTCCTGTTATAGGAATTGGGATTGTTGTGTTGGCTGATAAGTTGAATTTTTTGGTTGAAAATGATGCTATGTTTAGATTTGTGCTTTTATTGCAGTATACAACACCAAGTGCTATTTTGTTGGGAGCAATTGCTAGCTTGAGGGGTTATGCAGTTAGTGAAGCTTCAGCAGTTCTATTCTGGCAGCATGTGTTTGCTCTTTTCTCACTTTCTTTGTACATTATAATTTACTTTAGAGTAATTGATTACCTTTAG

Protein sequence

>Msa0388370

MLYIVYVTCTCSKSYYLKLITIILSFSLCCGNSYIVIFRRFCYSSVMLEDLHENNDKMRSHSEDIRTALQPLLKLICLPLIGLLLANPRMKLIPKATFKLLSKLVFALFLPCLIFSELGSSITLENFKEWWFIPVNVLLSTFFGCLLGFIVVTICHPPQRFNRFTIIMTGFGNTGNLLIAVVGSVCHTQNTPFGKQCNARGVAYVSLSQWISVILVYTFVYHMMEPPFEYYEIVENEAEIREEQEETILNDISRPLLVEAEWPGIEDKETQHSKTPFIARIFKSFSGISSSIIPDPDFDSLSGSVMEDEEESSENNHMSIRCLAEPRVVRRIRIVAEQTPIHHILQPPTIASLLAIIIGTVPQLKTFFFGNDAPMSFMTDSLEILAGAMVPCVMLILGGMLAEGPNESTLGIKTTIGIIVARLVVLPVIGIGIVVLADKLNFLVENDAMFRFVLLLQYTTPSAILLGAIASLRGYAVSEASAVLFWQHVFALFSLSLYIIIYFRVIDYL*