Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388370 | XP_003592549.1 | 97.840 | 463 | 7 | 1 | 47 | 509 | 1 | 460 | 0.0 | 918 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388370 | sp|Q9C999|PILS2_ARATH | 67.257 | 452 | 139 | 3 | 54 | 505 | 5 | 447 | 0.0 | 600 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388370 | G7IAS9 | 97.840 | 463 | 7 | 1 | 47 | 509 | 1 | 460 | 0.0 | 918 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0042790 | Msa0388370 | 0.869844 | 2.283863e-66 | -8.615850e-47 |
Msa0089710 | Msa0388370 | 0.981442 | 1.341689e-152 | -8.615850e-47 |
Msa0178700 | Msa0388370 | 0.843709 | 1.185788e-58 | -8.615850e-47 |
Msa0372990 | Msa0388370 | 0.803943 | 2.738818e-49 | -8.615850e-47 |
Msa0388370 | Msa0431940 | 0.811538 | 6.657961e-51 | -8.615850e-47 |
Msa0388370 | Msa0607620 | 0.802506 | 5.430973e-49 | -8.615850e-47 |
Msa0388370 | Msa0714200 | 0.813044 | 3.123009e-51 | -8.615850e-47 |
Msa0388370 | Msa0748980 | 0.802872 | 4.565919e-49 | -8.615850e-47 |
Msa0388370 | Msa0825520 | 0.803823 | 2.900298e-49 | -8.615850e-47 |
Msa0388370 | Msa0835550 | 0.804996 | 1.652147e-49 | -8.615850e-47 |
Msa0388370 | Msa0864730 | 0.805774 | 1.134581e-49 | -8.615850e-47 |
Msa0388370 | Msa0864750 | 0.802215 | 6.237202e-49 | -8.615850e-47 |
Msa0388370 | Msa1031220 | 0.809381 | 1.946396e-50 | -8.615850e-47 |
Msa0388370 | Msa1274310 | 0.810762 | 9.811494e-51 | -8.615850e-47 |
Msa0388370 | Msa1356730 | 0.809671 | 1.686439e-50 | -8.615850e-47 |
Msa0388370 | Msa1368660 | 0.808457 | 3.067553e-50 | -8.615850e-47 |
Msa0388370 | Msa1384620 | 0.802531 | 5.367244e-49 | -8.615850e-47 |
Msa0388370 | Msa1388270 | 0.810400 | 1.174777e-50 | -8.615850e-47 |
Msa0388370 | Msa1459630 | 0.807941 | 3.952103e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388370 | MtrunA17_Chr1g0208491 | 97.840 | 463 | 7 | 1 | 47 | 509 | 1 | 460 | 0.0 | 918 |
Msa0388370 | MtrunA17_Chr5g0422801 | 75.810 | 463 | 102 | 2 | 47 | 509 | 1 | 453 | 0.0 | 700 |
Msa0388370 | MtrunA17_Chr7g0245351 | 38.528 | 462 | 232 | 5 | 48 | 506 | 9 | 421 | 1.94e-105 | 321 |
Msa0388370 | MtrunA17_Chr5g0407621 | 28.140 | 430 | 273 | 6 | 71 | 498 | 13 | 408 | 9.36e-56 | 192 |
Msa0388370 | MtrunA17_Chr5g0407331 | 28.604 | 437 | 277 | 9 | 65 | 498 | 7 | 411 | 3.25e-54 | 188 |
Msa0388370 | MtrunA17_Chr8g0369961 | 29.099 | 433 | 252 | 9 | 71 | 498 | 13 | 395 | 1.13e-53 | 186 |
Msa0388370 | MtrunA17_Chr5g0407321 | 27.069 | 447 | 291 | 9 | 65 | 508 | 7 | 421 | 3.28e-51 | 180 |
Msa0388370 | MtrunA17_Chr8g0335261 | 25.734 | 443 | 288 | 7 | 68 | 506 | 10 | 415 | 1.49e-45 | 164 |
Msa0388370 | MtrunA17_Chr8g0335271 | 28.375 | 437 | 262 | 9 | 68 | 498 | 10 | 401 | 4.50e-40 | 149 |
Msa0388370 | MtrunA17_Chr5g0407271 | 23.799 | 437 | 240 | 8 | 65 | 498 | 7 | 353 | 3.73e-32 | 126 |
Msa0388370 | MtrunA17_Chr8g0370221 | 26.269 | 335 | 190 | 8 | 175 | 498 | 2 | 290 | 5.15e-29 | 116 |
Msa0388370 | MtrunA17_Chr5g0407281 | 31.548 | 168 | 114 | 1 | 341 | 508 | 9 | 175 | 3.69e-22 | 93.6 |
Msa0388370 | MtrunA17_Chr5g0407291 | 28.750 | 160 | 111 | 2 | 65 | 221 | 7 | 166 | 8.50e-19 | 84.0 |
Msa0388370 | MtrunA17_Chr8g0370211 | 33.333 | 102 | 67 | 1 | 60 | 160 | 2 | 103 | 1.28e-14 | 70.9 |
Msa0388370 | MtrunA17_Chr5g0407611 | 39.394 | 99 | 59 | 1 | 400 | 498 | 33 | 130 | 6.06e-13 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388370 | AT1G71090.1 | 67.257 | 452 | 139 | 3 | 54 | 505 | 5 | 447 | 0.0 | 600 |
Msa0388370 | AT5G01990.1 | 39.551 | 445 | 224 | 9 | 65 | 506 | 28 | 430 | 1.08e-105 | 323 |
Msa0388370 | AT1G76520.1 | 29.724 | 434 | 241 | 9 | 67 | 498 | 10 | 381 | 1.43e-58 | 199 |
Msa0388370 | AT1G76520.2 | 29.724 | 434 | 241 | 9 | 67 | 498 | 10 | 381 | 1.43e-58 | 199 |
Msa0388370 | AT2G17500.2 | 26.682 | 446 | 266 | 5 | 65 | 506 | 7 | 395 | 1.56e-55 | 191 |
Msa0388370 | AT2G17500.1 | 26.682 | 446 | 266 | 5 | 65 | 506 | 7 | 395 | 1.56e-55 | 191 |
Msa0388370 | AT2G17500.3 | 26.682 | 446 | 266 | 5 | 65 | 506 | 7 | 395 | 1.56e-55 | 191 |
Msa0388370 | AT2G17500.4 | 26.682 | 446 | 266 | 5 | 65 | 506 | 7 | 395 | 1.56e-55 | 191 |
Msa0388370 | AT5G65980.1 | 25.721 | 451 | 269 | 7 | 63 | 507 | 5 | 395 | 3.17e-53 | 185 |
Msa0388370 | AT5G65980.2 | 26.225 | 408 | 235 | 7 | 63 | 464 | 5 | 352 | 2.76e-47 | 168 |
Msa0388370 | AT1G20925.1 | 37.791 | 172 | 106 | 1 | 327 | 498 | 293 | 463 | 1.63e-28 | 118 |
Msa0388370 | AT1G20925.1 | 32.919 | 161 | 106 | 1 | 67 | 225 | 97 | 257 | 1.42e-23 | 103 |
Msa0388370 | AT1G76530.3 | 34.667 | 150 | 96 | 1 | 70 | 217 | 12 | 161 | 1.40e-20 | 93.2 |
Msa0388370 | AT1G76530.2 | 34.667 | 150 | 96 | 1 | 70 | 217 | 12 | 161 | 3.59e-20 | 93.2 |
Msa0388370 | AT1G76530.2 | 37.584 | 149 | 87 | 3 | 355 | 498 | 259 | 406 | 9.57e-18 | 85.9 |
Msa0388370 | AT1G76530.1 | 34.667 | 150 | 96 | 1 | 70 | 217 | 12 | 161 | 3.59e-20 | 93.2 |
Msa0388370 | AT1G76530.1 | 37.584 | 149 | 87 | 3 | 355 | 498 | 259 | 406 | 9.57e-18 | 85.9 |
Find 78 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACAGATAGTTTGGAAATTT+TGG | 0.137457 | 3_1:-92818043 | Msa0388370:CDS |
CCTGATTTCGATTCATTATC+AGG | 0.203290 | 3_1:-92818291 | Msa0388370:CDS |
CCTTGTGTAATGCTTATATT+AGG | 0.218422 | 3_1:-92818006 | Msa0388370:CDS |
CTTAAAGATTCTAGCAATAA+AGG | 0.231812 | 3_1:+92818350 | None:intergenic |
CTTGTTGTGCTTCCTGTTAT+AGG | 0.233061 | 3_1:-92817910 | Msa0388370:CDS |
CATACTCAAAATACTCCTTT+TGG | 0.244311 | 3_1:-92818618 | Msa0388370:CDS |
AAGCTTCAGCAGTTCTATTC+TGG | 0.272470 | 3_1:-92817741 | Msa0388370:CDS |
TTAGGAATTAATTTCATTCT+TGG | 0.273011 | 3_1:+92818915 | None:intergenic |
ACAATCATAATGACAGGATT+TGG | 0.274474 | 3_1:-92818684 | Msa0388370:CDS |
GTGCTTCCTGTTATAGGAAT+TGG | 0.292331 | 3_1:-92817904 | Msa0388370:CDS |
AACCAAGTTCACTAAATATT+AGG | 0.305263 | 3_1:+92818841 | None:intergenic |
CTTGGAATTAAAACTACAAT+TGG | 0.314458 | 3_1:-92817949 | Msa0388370:CDS |
TGCTTCCTGTTATAGGAATT+GGG | 0.320264 | 3_1:-92817903 | Msa0388370:CDS |
AAAATAATCATATGTCTATT+AGG | 0.320538 | 3_1:-92818236 | Msa0388370:CDS |
AGGAGTTTAAATGTGGCTTT+AGG | 0.328503 | 3_1:+92818897 | None:intergenic |
TCTTTGTTGGCTATTATCAT+TGG | 0.349134 | 3_1:-92818123 | Msa0388370:CDS |
CTTGTGTAATGCTTATATTA+GGG | 0.353196 | 3_1:-92818005 | Msa0388370:CDS |
GTTTCTTTATCTTCAATTCC+AGG | 0.358521 | 3_1:+92818390 | None:intergenic |
ATTCATATATAGTAATATTC+AGG | 0.358816 | 3_1:-92819256 | Msa0388370:intron |
CTTATGTTTCTTTATCTCAA+TGG | 0.364572 | 3_1:-92818569 | Msa0388370:CDS |
TCATATGTCTATTAGGTGTT+TGG | 0.365120 | 3_1:-92818229 | Msa0388370:CDS |
ATTCCAAGTGTTGACTCATT+TGG | 0.365792 | 3_1:+92817964 | None:intergenic |
TAGGAATTAATTTCATTCTT+GGG | 0.365940 | 3_1:+92818916 | None:intergenic |
TGGCTGAGCCTAGAGTTGTT+AGG | 0.375993 | 3_1:-92818209 | Msa0388370:CDS |
ACCAACAATTGCATCTTTGT+TGG | 0.380059 | 3_1:-92818136 | Msa0388370:CDS |
GGTTGAAGTATGTGATGAAT+TGG | 0.402240 | 3_1:+92818159 | None:intergenic |
GAAATCAGGATCAGGAATAA+TGG | 0.402945 | 3_1:+92818305 | None:intergenic |
CGCAACAAAGACTAAAACTA+AGG | 0.406647 | 3_1:+92819282 | None:intergenic |
ACAATCCCAATTCCTATAAC+AGG | 0.408237 | 3_1:+92817898 | None:intergenic |
AATCTTCTCATTGCTGTAGT+TGG | 0.414891 | 3_1:-92818651 | Msa0388370:CDS |
GGGAGCAATTGCTAGCTTGA+GGG | 0.420113 | 3_1:-92817779 | Msa0388370:CDS |
GTACTAAGAAGCACATTAAC+TGG | 0.420568 | 3_1:+92818777 | None:intergenic |
GTGAATCTATTAAACCTTTG+AGG | 0.420872 | 3_1:+92818705 | None:intergenic |
TTAAAGATTCTAGCAATAAA+GGG | 0.426630 | 3_1:+92818351 | None:intergenic |
TGCCTAATATTTAGTGAACT+TGG | 0.428326 | 3_1:-92818843 | Msa0388370:CDS |
CCTGATAATGAATCGAAATC+AGG | 0.429636 | 3_1:+92818291 | None:intergenic |
TACAGCAATGAGAAGATTAC+CGG | 0.449081 | 3_1:+92818656 | None:intergenic |
TTAATCTGCCTTCCACTCAT+AGG | 0.452296 | 3_1:-92818954 | Msa0388370:CDS |
AGGAATTGGGATTGTTGTGT+TGG | 0.466637 | 3_1:-92817890 | Msa0388370:CDS |
GTGCAAATACAAGTTTACTT+AGG | 0.473864 | 3_1:+92818877 | None:intergenic |
TTGGAATTAAAACTACAATT+GGG | 0.477581 | 3_1:-92817948 | Msa0388370:CDS |
TGGGAGCAATTGCTAGCTTG+AGG | 0.481846 | 3_1:-92817780 | Msa0388370:CDS |
ACAATCTCATAATACTCAAA+AGG | 0.487804 | 3_1:+92818498 | None:intergenic |
CTTGTAGAAGCTGAGTGGCC+TGG | 0.487906 | 3_1:-92818408 | Msa0388370:CDS |
GCCAACAAAGATGCAATTGT+TGG | 0.492975 | 3_1:+92818135 | None:intergenic |
CTTATCCTCCTAACAACTCT+AGG | 0.497949 | 3_1:+92818201 | None:intergenic |
AATAATGGACGAGGAAATAC+CGG | 0.501207 | 3_1:+92818320 | None:intergenic |
AATGAATCGAAATCAGGATC+AGG | 0.507261 | 3_1:+92818297 | None:intergenic |
ATGCTTACTTGGATTCATAG+TGG | 0.542583 | 3_1:-92818745 | Msa0388370:CDS |
AACTACAATTGGGATAATTG+TGG | 0.546358 | 3_1:-92817938 | Msa0388370:CDS |
TTCATTATCAGGATCAGTAA+TGG | 0.546971 | 3_1:-92818280 | Msa0388370:CDS |
GAAGTAGTCCTATGAGTGGA+AGG | 0.554590 | 3_1:+92818946 | None:intergenic |
ATCTATTAAACCTTTGAGGT+GGG | 0.559127 | 3_1:+92818709 | None:intergenic |
GGAGCAATTGCTAGCTTGAG+GGG | 0.563569 | 3_1:-92817778 | Msa0388370:CDS |
AGATTCACAATCATAATGAC+AGG | 0.565619 | 3_1:-92818690 | Msa0388370:CDS |
CTATATGTCACCCACCTCAA+AGG | 0.567998 | 3_1:-92818719 | Msa0388370:CDS |
TTGTGTAATGCTTATATTAG+GGG | 0.572998 | 3_1:-92818004 | Msa0388370:CDS |
CTATCTGTCATAAAAGACAT+TGG | 0.574241 | 3_1:+92818057 | None:intergenic |
TTTACTTAGGAGTTTAAATG+TGG | 0.575857 | 3_1:+92818890 | None:intergenic |
GGACCAAATGAGTCAACACT+TGG | 0.581085 | 3_1:-92817967 | Msa0388370:CDS |
CACTCAGCTTCTACAAGAAG+CGG | 0.586574 | 3_1:+92818414 | None:intergenic |
ATGAAAATAATGATAAAATG+AGG | 0.590735 | 3_1:-92819022 | Msa0388370:CDS |
AGGCAGATTAACTTCAACAA+AGG | 0.594814 | 3_1:+92818966 | None:intergenic |
AACAAAGATGCAATTGTTGG+TGG | 0.598573 | 3_1:+92818138 | None:intergenic |
GGAAAACAATGCAATGCAAG+AGG | 0.599070 | 3_1:-92818597 | Msa0388370:CDS |
AATCTATTAAACCTTTGAGG+TGG | 0.609661 | 3_1:+92818708 | None:intergenic |
TGTGTAATGCTTATATTAGG+GGG | 0.611243 | 3_1:-92818003 | Msa0388370:CDS |
CTGAGCCTAGAGTTGTTAGG+AGG | 0.617408 | 3_1:-92818206 | Msa0388370:CDS |
GCTCCCAACAAAATAGCACT+TGG | 0.619409 | 3_1:+92817796 | None:intergenic |
AGGATCAGTAATGGAGGACG+AGG | 0.622249 | 3_1:-92818271 | Msa0388370:CDS |
ATCTCATAATACTCAAAAGG+AGG | 0.634016 | 3_1:+92818501 | None:intergenic |
ATGACAGGATTTGGAAACAC+CGG | 0.646503 | 3_1:-92818675 | Msa0388370:CDS |
AGGATCAGGAATAATGGACG+AGG | 0.649375 | 3_1:+92818311 | None:intergenic |
CGCTTCTTGTAGAAGCTGAG+TGG | 0.653516 | 3_1:-92818413 | Msa0388370:CDS |
AGTTCACTAAATATTAGGCA+AGG | 0.654744 | 3_1:+92818846 | None:intergenic |
ATTATCAGGATCAGTAATGG+AGG | 0.655209 | 3_1:-92818277 | Msa0388370:CDS |
GCAAGAAGTAGTCCTATGAG+TGG | 0.663281 | 3_1:+92818942 | None:intergenic |
CCTAATATAAGCATTACACA+AGG | 0.709180 | 3_1:+92818006 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTCATATATAGTAATATTC+AGG | - | chr3_1:92817763-92817782 | Msa0388370:CDS | 15.0% |
!! | ATGAAAATAATGATAAAATG+AGG | - | chr3_1:92817997-92818016 | Msa0388370:CDS | 15.0% |
!! | AAAATAATCATATGTCTATT+AGG | - | chr3_1:92818783-92818802 | Msa0388370:CDS | 15.0% |
!! | ATTCATATATAGTAATATTC+AGG | - | chr3_1:92817763-92817782 | Msa0388370:CDS | 15.0% |
!! | ATGAAAATAATGATAAAATG+AGG | - | chr3_1:92817997-92818016 | Msa0388370:CDS | 15.0% |
!! | AAAATAATCATATGTCTATT+AGG | - | chr3_1:92818783-92818802 | Msa0388370:CDS | 15.0% |
!! | TAGGAATTAATTTCATTCTT+GGG | + | chr3_1:92818106-92818125 | None:intergenic | 20.0% |
!! | TTAGGAATTAATTTCATTCT+TGG | + | chr3_1:92818107-92818126 | None:intergenic | 20.0% |
!! | TTAAAGATTCTAGCAATAAA+GGG | + | chr3_1:92818671-92818690 | None:intergenic | 20.0% |
!!! | AAAGAAAAATGTTTTCAACT+GGG | + | chr3_1:92818930-92818949 | None:intergenic | 20.0% |
!! | TTGGAATTAAAACTACAATT+GGG | - | chr3_1:92819071-92819090 | Msa0388370:intron | 20.0% |
!! | TAGGAATTAATTTCATTCTT+GGG | + | chr3_1:92818106-92818125 | None:intergenic | 20.0% |
!! | TTAGGAATTAATTTCATTCT+TGG | + | chr3_1:92818107-92818126 | None:intergenic | 20.0% |
!! | TTAAAGATTCTAGCAATAAA+GGG | + | chr3_1:92818671-92818690 | None:intergenic | 20.0% |
!!! | AAAGAAAAATGTTTTCAACT+GGG | + | chr3_1:92818930-92818949 | None:intergenic | 20.0% |
!! | TTGGAATTAAAACTACAATT+GGG | - | chr3_1:92819071-92819090 | Msa0388370:intron | 20.0% |
! | CAATATTCATAATCATCACA+TGG | + | chr3_1:92817821-92817840 | None:intergenic | 25.0% |
! | CATGTGATGATTATGAATAT+TGG | - | chr3_1:92817819-92817838 | Msa0388370:CDS | 25.0% |
! | TTTACTTAGGAGTTTAAATG+TGG | + | chr3_1:92818132-92818151 | None:intergenic | 25.0% |
! | AACCAAGTTCACTAAATATT+AGG | + | chr3_1:92818181-92818200 | None:intergenic | 25.0% |
!! | CATTACTCTTGAGAATTTTA+AGG | - | chr3_1:92818205-92818224 | Msa0388370:CDS | 25.0% |
! | CTTATGTTTCTTTATCTCAA+TGG | - | chr3_1:92818450-92818469 | Msa0388370:CDS | 25.0% |
! | ACAATCTCATAATACTCAAA+AGG | + | chr3_1:92818524-92818543 | None:intergenic | 25.0% |
! | CTTAAAGATTCTAGCAATAA+AGG | + | chr3_1:92818672-92818691 | None:intergenic | 25.0% |
!! | AAGAAAAATGTTTTCAACTG+GGG | + | chr3_1:92818929-92818948 | None:intergenic | 25.0% |
!! | CAAAGAAAAATGTTTTCAAC+TGG | + | chr3_1:92818931-92818950 | None:intergenic | 25.0% |
!! | CAGTTGAAAACATTTTTCTT+TGG | - | chr3_1:92818929-92818948 | Msa0388370:CDS | 25.0% |
! | CTTGTGTAATGCTTATATTA+GGG | - | chr3_1:92819014-92819033 | Msa0388370:CDS | 25.0% |
! | TTGTGTAATGCTTATATTAG+GGG | - | chr3_1:92819015-92819034 | Msa0388370:CDS | 25.0% |
! | CTTGGAATTAAAACTACAAT+TGG | - | chr3_1:92819070-92819089 | Msa0388370:intron | 25.0% |
! | CAATATTCATAATCATCACA+TGG | + | chr3_1:92817821-92817840 | None:intergenic | 25.0% |
! | CATGTGATGATTATGAATAT+TGG | - | chr3_1:92817819-92817838 | Msa0388370:CDS | 25.0% |
! | TTTACTTAGGAGTTTAAATG+TGG | + | chr3_1:92818132-92818151 | None:intergenic | 25.0% |
! | AACCAAGTTCACTAAATATT+AGG | + | chr3_1:92818181-92818200 | None:intergenic | 25.0% |
!! | CATTACTCTTGAGAATTTTA+AGG | - | chr3_1:92818205-92818224 | Msa0388370:CDS | 25.0% |
! | CTTATGTTTCTTTATCTCAA+TGG | - | chr3_1:92818450-92818469 | Msa0388370:CDS | 25.0% |
! | ACAATCTCATAATACTCAAA+AGG | + | chr3_1:92818524-92818543 | None:intergenic | 25.0% |
! | CTTAAAGATTCTAGCAATAA+AGG | + | chr3_1:92818672-92818691 | None:intergenic | 25.0% |
!! | AAGAAAAATGTTTTCAACTG+GGG | + | chr3_1:92818929-92818948 | None:intergenic | 25.0% |
!! | CAAAGAAAAATGTTTTCAAC+TGG | + | chr3_1:92818931-92818950 | None:intergenic | 25.0% |
!! | CAGTTGAAAACATTTTTCTT+TGG | - | chr3_1:92818929-92818948 | Msa0388370:CDS | 25.0% |
! | CTTGTGTAATGCTTATATTA+GGG | - | chr3_1:92819014-92819033 | Msa0388370:CDS | 25.0% |
! | TTGTGTAATGCTTATATTAG+GGG | - | chr3_1:92819015-92819034 | Msa0388370:CDS | 25.0% |
! | CTTGGAATTAAAACTACAAT+TGG | - | chr3_1:92819070-92819089 | Msa0388370:intron | 25.0% |
!!! | CTTAGTTTTAGTCTTTGTTG+CGG | - | chr3_1:92817738-92817757 | Msa0388370:CDS | 30.0% |
!!! | TTAGTTTTAGTCTTTGTTGC+GGG | - | chr3_1:92817739-92817758 | Msa0388370:CDS | 30.0% |
TTTCTTATGAACTCAATTGC+AGG | - | chr3_1:92817937-92817956 | Msa0388370:CDS | 30.0% | |
GTGCAAATACAAGTTTACTT+AGG | + | chr3_1:92818145-92818164 | None:intergenic | 30.0% | |
AGTTCACTAAATATTAGGCA+AGG | + | chr3_1:92818176-92818195 | None:intergenic | 30.0% | |
TGCCTAATATTTAGTGAACT+TGG | - | chr3_1:92818176-92818195 | Msa0388370:CDS | 30.0% | |
!! | CTCTTGAGAATTTTAAGGAA+TGG | - | chr3_1:92818210-92818229 | Msa0388370:CDS | 30.0% |
!! | TTGAGAATTTTAAGGAATGG+TGG | - | chr3_1:92818213-92818232 | Msa0388370:CDS | 30.0% |
!!! | GTGCTTCTTAGTACATTTTT+TGG | - | chr3_1:92818251-92818270 | Msa0388370:CDS | 30.0% |
!!! | ACATTTTTTGGATGCTTACT+TGG | - | chr3_1:92818263-92818282 | Msa0388370:CDS | 30.0% |
!! | ATCTATTAAACCTTTGAGGT+GGG | + | chr3_1:92818313-92818332 | None:intergenic | 30.0% |
! | AATCTATTAAACCTTTGAGG+TGG | + | chr3_1:92818314-92818333 | None:intergenic | 30.0% |
GTGAATCTATTAAACCTTTG+AGG | + | chr3_1:92818317-92818336 | None:intergenic | 30.0% | |
AGATTCACAATCATAATGAC+AGG | - | chr3_1:92818329-92818348 | Msa0388370:CDS | 30.0% | |
ACAATCATAATGACAGGATT+TGG | - | chr3_1:92818335-92818354 | Msa0388370:CDS | 30.0% | |
! | CATACTCAAAATACTCCTTT+TGG | - | chr3_1:92818401-92818420 | Msa0388370:CDS | 30.0% |
!! | CACTTTTGTTTATCACATGA+TGG | - | chr3_1:92818493-92818512 | Msa0388370:CDS | 30.0% |
ATCTCATAATACTCAAAAGG+AGG | + | chr3_1:92818521-92818540 | None:intergenic | 30.0% | |
GTTTCTTTATCTTCAATTCC+AGG | + | chr3_1:92818632-92818651 | None:intergenic | 30.0% | |
!! | AGAATCTTTAAGAGCTTTTC+CGG | - | chr3_1:92818680-92818699 | Msa0388370:CDS | 30.0% |
TTCATTATCAGGATCAGTAA+TGG | - | chr3_1:92818739-92818758 | Msa0388370:CDS | 30.0% | |
TCATATGTCTATTAGGTGTT+TGG | - | chr3_1:92818790-92818809 | Msa0388370:CDS | 30.0% | |
! | TCTTTGTTGGCTATTATCAT+TGG | - | chr3_1:92818896-92818915 | Msa0388370:CDS | 30.0% |
CTATCTGTCATAAAAGACAT+TGG | + | chr3_1:92818965-92818984 | None:intergenic | 30.0% | |
! | GTCTTTTATGACAGATAGTT+TGG | - | chr3_1:92818967-92818986 | Msa0388370:CDS | 30.0% |
! | GACAGATAGTTTGGAAATTT+TGG | - | chr3_1:92818976-92818995 | Msa0388370:CDS | 30.0% |
CCTAATATAAGCATTACACA+AGG | + | chr3_1:92819016-92819035 | None:intergenic | 30.0% | |
CCTTGTGTAATGCTTATATT+AGG | - | chr3_1:92819013-92819032 | Msa0388370:CDS | 30.0% | |
TGTGTAATGCTTATATTAGG+GGG | - | chr3_1:92819016-92819035 | Msa0388370:CDS | 30.0% | |
AACTACAATTGGGATAATTG+TGG | - | chr3_1:92819081-92819100 | Msa0388370:intron | 30.0% | |
!!! | GGCTGATAAGTTGAATTTTT+TGG | - | chr3_1:92819150-92819169 | Msa0388370:intron | 30.0% |
!!! | CTTAGTTTTAGTCTTTGTTG+CGG | - | chr3_1:92817738-92817757 | Msa0388370:CDS | 30.0% |
!!! | TTAGTTTTAGTCTTTGTTGC+GGG | - | chr3_1:92817739-92817758 | Msa0388370:CDS | 30.0% |
TTTCTTATGAACTCAATTGC+AGG | - | chr3_1:92817937-92817956 | Msa0388370:CDS | 30.0% | |
GTGCAAATACAAGTTTACTT+AGG | + | chr3_1:92818145-92818164 | None:intergenic | 30.0% | |
AGTTCACTAAATATTAGGCA+AGG | + | chr3_1:92818176-92818195 | None:intergenic | 30.0% | |
TGCCTAATATTTAGTGAACT+TGG | - | chr3_1:92818176-92818195 | Msa0388370:CDS | 30.0% | |
!! | CTCTTGAGAATTTTAAGGAA+TGG | - | chr3_1:92818210-92818229 | Msa0388370:CDS | 30.0% |
!! | TTGAGAATTTTAAGGAATGG+TGG | - | chr3_1:92818213-92818232 | Msa0388370:CDS | 30.0% |
!!! | GTGCTTCTTAGTACATTTTT+TGG | - | chr3_1:92818251-92818270 | Msa0388370:CDS | 30.0% |
!!! | ACATTTTTTGGATGCTTACT+TGG | - | chr3_1:92818263-92818282 | Msa0388370:CDS | 30.0% |
!! | ATCTATTAAACCTTTGAGGT+GGG | + | chr3_1:92818313-92818332 | None:intergenic | 30.0% |
! | AATCTATTAAACCTTTGAGG+TGG | + | chr3_1:92818314-92818333 | None:intergenic | 30.0% |
GTGAATCTATTAAACCTTTG+AGG | + | chr3_1:92818317-92818336 | None:intergenic | 30.0% | |
AGATTCACAATCATAATGAC+AGG | - | chr3_1:92818329-92818348 | Msa0388370:CDS | 30.0% | |
ACAATCATAATGACAGGATT+TGG | - | chr3_1:92818335-92818354 | Msa0388370:CDS | 30.0% | |
! | CATACTCAAAATACTCCTTT+TGG | - | chr3_1:92818401-92818420 | Msa0388370:CDS | 30.0% |
!! | CACTTTTGTTTATCACATGA+TGG | - | chr3_1:92818493-92818512 | Msa0388370:CDS | 30.0% |
ATCTCATAATACTCAAAAGG+AGG | + | chr3_1:92818521-92818540 | None:intergenic | 30.0% | |
GTTTCTTTATCTTCAATTCC+AGG | + | chr3_1:92818632-92818651 | None:intergenic | 30.0% | |
!! | AGAATCTTTAAGAGCTTTTC+CGG | - | chr3_1:92818680-92818699 | Msa0388370:CDS | 30.0% |
TTCATTATCAGGATCAGTAA+TGG | - | chr3_1:92818739-92818758 | Msa0388370:CDS | 30.0% | |
TCATATGTCTATTAGGTGTT+TGG | - | chr3_1:92818790-92818809 | Msa0388370:CDS | 30.0% | |
! | TCTTTGTTGGCTATTATCAT+TGG | - | chr3_1:92818896-92818915 | Msa0388370:CDS | 30.0% |
CTATCTGTCATAAAAGACAT+TGG | + | chr3_1:92818965-92818984 | None:intergenic | 30.0% | |
! | GTCTTTTATGACAGATAGTT+TGG | - | chr3_1:92818967-92818986 | Msa0388370:CDS | 30.0% |
! | GACAGATAGTTTGGAAATTT+TGG | - | chr3_1:92818976-92818995 | Msa0388370:CDS | 30.0% |
CCTAATATAAGCATTACACA+AGG | + | chr3_1:92819016-92819035 | None:intergenic | 30.0% | |
CCTTGTGTAATGCTTATATT+AGG | - | chr3_1:92819013-92819032 | Msa0388370:CDS | 30.0% | |
TGTGTAATGCTTATATTAGG+GGG | - | chr3_1:92819016-92819035 | Msa0388370:CDS | 30.0% | |
AACTACAATTGGGATAATTG+TGG | - | chr3_1:92819081-92819100 | Msa0388370:intron | 30.0% | |
!!! | GGCTGATAAGTTGAATTTTT+TGG | - | chr3_1:92819150-92819169 | Msa0388370:intron | 30.0% |
CGCAACAAAGACTAAAACTA+AGG | + | chr3_1:92817740-92817759 | None:intergenic | 35.0% | |
AGGCAGATTAACTTCAACAA+AGG | + | chr3_1:92818056-92818075 | None:intergenic | 35.0% | |
AGGAGTTTAAATGTGGCTTT+AGG | + | chr3_1:92818125-92818144 | None:intergenic | 35.0% | |
! | GTACTAAGAAGCACATTAAC+TGG | + | chr3_1:92818245-92818264 | None:intergenic | 35.0% |
ATGCTTACTTGGATTCATAG+TGG | - | chr3_1:92818274-92818293 | Msa0388370:CDS | 35.0% | |
TACAGCAATGAGAAGATTAC+CGG | + | chr3_1:92818366-92818385 | None:intergenic | 35.0% | |
AATCTTCTCATTGCTGTAGT+TGG | - | chr3_1:92818368-92818387 | Msa0388370:CDS | 35.0% | |
! | GCATTGCATTGTTTTCCAAA+AGG | + | chr3_1:92818419-92818438 | None:intergenic | 35.0% |
!! | AATAATGGACGAGGAAATAC+CGG | + | chr3_1:92818702-92818721 | None:intergenic | 35.0% |
GAAATCAGGATCAGGAATAA+TGG | + | chr3_1:92818717-92818736 | None:intergenic | 35.0% | |
AATGAATCGAAATCAGGATC+AGG | + | chr3_1:92818725-92818744 | None:intergenic | 35.0% | |
! | CCTGATAATGAATCGAAATC+AGG | + | chr3_1:92818731-92818750 | None:intergenic | 35.0% |
CCTGATTTCGATTCATTATC+AGG | - | chr3_1:92818728-92818747 | Msa0388370:CDS | 35.0% | |
ATTATCAGGATCAGTAATGG+AGG | - | chr3_1:92818742-92818761 | Msa0388370:CDS | 35.0% | |
GGTTGAAGTATGTGATGAAT+TGG | + | chr3_1:92818863-92818882 | None:intergenic | 35.0% | |
AACAAAGATGCAATTGTTGG+TGG | + | chr3_1:92818884-92818903 | None:intergenic | 35.0% | |
ACCAACAATTGCATCTTTGT+TGG | - | chr3_1:92818883-92818902 | Msa0388370:CDS | 35.0% | |
!! | GATAGTTTGGAAATTTTGGC+TGG | - | chr3_1:92818980-92818999 | Msa0388370:CDS | 35.0% |
!! | ATTCCAAGTGTTGACTCATT+TGG | + | chr3_1:92819058-92819077 | None:intergenic | 35.0% |
TGCTTCCTGTTATAGGAATT+GGG | - | chr3_1:92819116-92819135 | Msa0388370:intron | 35.0% | |
ACAATCCCAATTCCTATAAC+AGG | + | chr3_1:92819124-92819143 | None:intergenic | 35.0% | |
!!! | AACACCAAGTGCTATTTTGT+TGG | - | chr3_1:92819219-92819238 | Msa0388370:intron | 35.0% |
!!! | ACACCAAGTGCTATTTTGTT+GGG | - | chr3_1:92819220-92819239 | Msa0388370:intron | 35.0% |
CGCAACAAAGACTAAAACTA+AGG | + | chr3_1:92817740-92817759 | None:intergenic | 35.0% | |
AGGCAGATTAACTTCAACAA+AGG | + | chr3_1:92818056-92818075 | None:intergenic | 35.0% | |
AGGAGTTTAAATGTGGCTTT+AGG | + | chr3_1:92818125-92818144 | None:intergenic | 35.0% | |
! | GTACTAAGAAGCACATTAAC+TGG | + | chr3_1:92818245-92818264 | None:intergenic | 35.0% |
ATGCTTACTTGGATTCATAG+TGG | - | chr3_1:92818274-92818293 | Msa0388370:CDS | 35.0% | |
TACAGCAATGAGAAGATTAC+CGG | + | chr3_1:92818366-92818385 | None:intergenic | 35.0% | |
AATCTTCTCATTGCTGTAGT+TGG | - | chr3_1:92818368-92818387 | Msa0388370:CDS | 35.0% | |
! | GCATTGCATTGTTTTCCAAA+AGG | + | chr3_1:92818419-92818438 | None:intergenic | 35.0% |
!! | AATAATGGACGAGGAAATAC+CGG | + | chr3_1:92818702-92818721 | None:intergenic | 35.0% |
GAAATCAGGATCAGGAATAA+TGG | + | chr3_1:92818717-92818736 | None:intergenic | 35.0% | |
AATGAATCGAAATCAGGATC+AGG | + | chr3_1:92818725-92818744 | None:intergenic | 35.0% | |
! | CCTGATAATGAATCGAAATC+AGG | + | chr3_1:92818731-92818750 | None:intergenic | 35.0% |
CCTGATTTCGATTCATTATC+AGG | - | chr3_1:92818728-92818747 | Msa0388370:CDS | 35.0% | |
ATTATCAGGATCAGTAATGG+AGG | - | chr3_1:92818742-92818761 | Msa0388370:CDS | 35.0% | |
GGTTGAAGTATGTGATGAAT+TGG | + | chr3_1:92818863-92818882 | None:intergenic | 35.0% | |
AACAAAGATGCAATTGTTGG+TGG | + | chr3_1:92818884-92818903 | None:intergenic | 35.0% | |
ACCAACAATTGCATCTTTGT+TGG | - | chr3_1:92818883-92818902 | Msa0388370:CDS | 35.0% | |
!! | GATAGTTTGGAAATTTTGGC+TGG | - | chr3_1:92818980-92818999 | Msa0388370:CDS | 35.0% |
!! | ATTCCAAGTGTTGACTCATT+TGG | + | chr3_1:92819058-92819077 | None:intergenic | 35.0% |
TGCTTCCTGTTATAGGAATT+GGG | - | chr3_1:92819116-92819135 | Msa0388370:intron | 35.0% | |
ACAATCCCAATTCCTATAAC+AGG | + | chr3_1:92819124-92819143 | None:intergenic | 35.0% | |
!!! | AACACCAAGTGCTATTTTGT+TGG | - | chr3_1:92819219-92819238 | Msa0388370:intron | 35.0% |
!!! | ACACCAAGTGCTATTTTGTT+GGG | - | chr3_1:92819220-92819239 | Msa0388370:intron | 35.0% |
!! | GGTGTTATTGCAATCTACTC+TGG | - | chr3_1:92817840-92817859 | Msa0388370:CDS | 40.0% |
TTAATCTGCCTTCCACTCAT+AGG | - | chr3_1:92818065-92818084 | Msa0388370:CDS | 40.0% | |
ATGACAGGATTTGGAAACAC+CGG | - | chr3_1:92818344-92818363 | Msa0388370:CDS | 40.0% | |
GGAAAACAATGCAATGCAAG+AGG | - | chr3_1:92818422-92818441 | Msa0388370:CDS | 40.0% | |
CTTATCCTCCTAACAACTCT+AGG | + | chr3_1:92818821-92818840 | None:intergenic | 40.0% | |
GCCAACAAAGATGCAATTGT+TGG | + | chr3_1:92818887-92818906 | None:intergenic | 40.0% | |
! | CTTGTTGTGCTTCCTGTTAT+AGG | - | chr3_1:92819109-92819128 | Msa0388370:intron | 40.0% |
GTGCTTCCTGTTATAGGAAT+TGG | - | chr3_1:92819115-92819134 | Msa0388370:intron | 40.0% | |
AGGAATTGGGATTGTTGTGT+TGG | - | chr3_1:92819129-92819148 | Msa0388370:intron | 40.0% | |
AAGCTTCAGCAGTTCTATTC+TGG | - | chr3_1:92819278-92819297 | Msa0388370:CDS | 40.0% | |
!! | GGTGTTATTGCAATCTACTC+TGG | - | chr3_1:92817840-92817859 | Msa0388370:CDS | 40.0% |
TTAATCTGCCTTCCACTCAT+AGG | - | chr3_1:92818065-92818084 | Msa0388370:CDS | 40.0% | |
ATGACAGGATTTGGAAACAC+CGG | - | chr3_1:92818344-92818363 | Msa0388370:CDS | 40.0% | |
GGAAAACAATGCAATGCAAG+AGG | - | chr3_1:92818422-92818441 | Msa0388370:CDS | 40.0% | |
CTTATCCTCCTAACAACTCT+AGG | + | chr3_1:92818821-92818840 | None:intergenic | 40.0% | |
GCCAACAAAGATGCAATTGT+TGG | + | chr3_1:92818887-92818906 | None:intergenic | 40.0% | |
! | CTTGTTGTGCTTCCTGTTAT+AGG | - | chr3_1:92819109-92819128 | Msa0388370:intron | 40.0% |
GTGCTTCCTGTTATAGGAAT+TGG | - | chr3_1:92819115-92819134 | Msa0388370:intron | 40.0% | |
AGGAATTGGGATTGTTGTGT+TGG | - | chr3_1:92819129-92819148 | Msa0388370:intron | 40.0% | |
AAGCTTCAGCAGTTCTATTC+TGG | - | chr3_1:92819278-92819297 | Msa0388370:CDS | 40.0% | |
GAAGTAGTCCTATGAGTGGA+AGG | + | chr3_1:92818076-92818095 | None:intergenic | 45.0% | |
GCAAGAAGTAGTCCTATGAG+TGG | + | chr3_1:92818080-92818099 | None:intergenic | 45.0% | |
CTATATGTCACCCACCTCAA+AGG | - | chr3_1:92818300-92818319 | Msa0388370:CDS | 45.0% | |
CACTCAGCTTCTACAAGAAG+CGG | + | chr3_1:92818608-92818627 | None:intergenic | 45.0% | |
!! | AGGATCAGGAATAATGGACG+AGG | + | chr3_1:92818711-92818730 | None:intergenic | 45.0% |
!!! | GGAAATTTTGGCTGGTGCAA+TGG | - | chr3_1:92818988-92819007 | Msa0388370:CDS | 45.0% |
GGACCAAATGAGTCAACACT+TGG | - | chr3_1:92819052-92819071 | Msa0388370:CDS | 45.0% | |
GCTCCCAACAAAATAGCACT+TGG | + | chr3_1:92819226-92819245 | None:intergenic | 45.0% | |
GAAGTAGTCCTATGAGTGGA+AGG | + | chr3_1:92818076-92818095 | None:intergenic | 45.0% | |
GCAAGAAGTAGTCCTATGAG+TGG | + | chr3_1:92818080-92818099 | None:intergenic | 45.0% | |
CTATATGTCACCCACCTCAA+AGG | - | chr3_1:92818300-92818319 | Msa0388370:CDS | 45.0% | |
CACTCAGCTTCTACAAGAAG+CGG | + | chr3_1:92818608-92818627 | None:intergenic | 45.0% | |
!! | AGGATCAGGAATAATGGACG+AGG | + | chr3_1:92818711-92818730 | None:intergenic | 45.0% |
!!! | GGAAATTTTGGCTGGTGCAA+TGG | - | chr3_1:92818988-92819007 | Msa0388370:CDS | 45.0% |
GGACCAAATGAGTCAACACT+TGG | - | chr3_1:92819052-92819071 | Msa0388370:CDS | 45.0% | |
GCTCCCAACAAAATAGCACT+TGG | + | chr3_1:92819226-92819245 | None:intergenic | 45.0% | |
CGCTTCTTGTAGAAGCTGAG+TGG | - | chr3_1:92818606-92818625 | Msa0388370:CDS | 50.0% | |
! | AGGATCAGTAATGGAGGACG+AGG | - | chr3_1:92818748-92818767 | Msa0388370:CDS | 50.0% |
TGGCTGAGCCTAGAGTTGTT+AGG | - | chr3_1:92818810-92818829 | Msa0388370:CDS | 50.0% | |
CTGAGCCTAGAGTTGTTAGG+AGG | - | chr3_1:92818813-92818832 | Msa0388370:CDS | 50.0% | |
! | TTAGGGGGTATGCTAGCTGA+AGG | - | chr3_1:92819031-92819050 | Msa0388370:CDS | 50.0% |
! | TGGGAGCAATTGCTAGCTTG+AGG | - | chr3_1:92819239-92819258 | Msa0388370:intron | 50.0% |
! | GGGAGCAATTGCTAGCTTGA+GGG | - | chr3_1:92819240-92819259 | Msa0388370:intron | 50.0% |
! | GGAGCAATTGCTAGCTTGAG+GGG | - | chr3_1:92819241-92819260 | Msa0388370:intron | 50.0% |
CGCTTCTTGTAGAAGCTGAG+TGG | - | chr3_1:92818606-92818625 | Msa0388370:CDS | 50.0% | |
! | AGGATCAGTAATGGAGGACG+AGG | - | chr3_1:92818748-92818767 | Msa0388370:CDS | 50.0% |
TGGCTGAGCCTAGAGTTGTT+AGG | - | chr3_1:92818810-92818829 | Msa0388370:CDS | 50.0% | |
CTGAGCCTAGAGTTGTTAGG+AGG | - | chr3_1:92818813-92818832 | Msa0388370:CDS | 50.0% | |
! | TTAGGGGGTATGCTAGCTGA+AGG | - | chr3_1:92819031-92819050 | Msa0388370:CDS | 50.0% |
! | TGGGAGCAATTGCTAGCTTG+AGG | - | chr3_1:92819239-92819258 | Msa0388370:intron | 50.0% |
! | GGGAGCAATTGCTAGCTTGA+GGG | - | chr3_1:92819240-92819259 | Msa0388370:intron | 50.0% |
! | GGAGCAATTGCTAGCTTGAG+GGG | - | chr3_1:92819241-92819260 | Msa0388370:intron | 50.0% |
CTTGTAGAAGCTGAGTGGCC+TGG | - | chr3_1:92818611-92818630 | Msa0388370:CDS | 55.0% | |
CTTGTAGAAGCTGAGTGGCC+TGG | - | chr3_1:92818611-92818630 | Msa0388370:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 92817669 | 92819372 | 92817669 | ID=Msa0388370;Name=Msa0388370 |
chr3_1 | mRNA | 92817669 | 92819372 | 92817669 | ID=Msa0388370-mRNA-1;Parent=Msa0388370;Name=Msa0388370-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|0|0.5|2|0|509 |
chr3_1 | exon | 92819257 | 92819372 | 92819257 | ID=Msa0388370-mRNA-1:exon:26122;Parent=Msa0388370-mRNA-1 |
chr3_1 | exon | 92817669 | 92819082 | 92817669 | ID=Msa0388370-mRNA-1:exon:26121;Parent=Msa0388370-mRNA-1 |
chr3_1 | CDS | 92819257 | 92819372 | 92819257 | ID=Msa0388370-mRNA-1:cds;Parent=Msa0388370-mRNA-1 |
chr3_1 | CDS | 92817669 | 92819082 | 92817669 | ID=Msa0388370-mRNA-1:cds;Parent=Msa0388370-mRNA-1 |
Gene Sequence |
Protein sequence |