AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356730 MtrunA17_Chr5g0397331 98.023 354 7 0 1 354 1 354 0.0 728
Msa1356730 MtrunA17_Chr1g0191411 53.257 261 118 3 82 340 5 263 3.65e-93 280
Msa1356730 MtrunA17_Chr7g0273211 50.916 273 126 4 82 350 37 305 1.65e-89 271
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356730 AT3G05170.1 54.887 266 112 4 82 343 9 270 1.22e-95 287
Msa1356730 AT1G08940.1 53.279 244 104 3 82 319 9 248 5.77e-88 266

Find 84 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTTGTGAGGCCTATTT+TGG 0.129826 tig0015859:+14691 None:intergenic
AAAGCGCAACGTCATCTTTA+TGG 0.146163 tig0015859:-14316 Msa1356730:CDS
ATTATATTGCTACAAATTTA+TGG 0.157611 tig0015859:+12873 None:intergenic
TTCGAGGGTCTCAACAATTT+TGG 0.181594 tig0015859:-13648 Msa1356730:CDS
CTAACAAGAATTATTCTTCT+AGG 0.216607 tig0015859:+14770 None:intergenic
TTCTTATGAGATGGTATAAA+TGG 0.250801 tig0015859:-13683 Msa1356730:CDS
CAACCATGAATTCTGACTTA+TGG 0.264095 tig0015859:-15082 None:intergenic
GCAAACAGAAGCCAACAAAA+AGG 0.310141 tig0015859:-12915 Msa1356730:CDS
GTTTCGAGAGTCCTTCTATA+TGG 0.315932 tig0015859:+14575 None:intergenic
GAACAAGAGTTAAGACAGTT+TGG 0.341634 tig0015859:-13146 Msa1356730:CDS
TTTGAACGTTCAAGAATTGC+TGG 0.343872 tig0015859:-14530 Msa1356730:CDS
AACCATGAATTCTGACTTAT+GGG 0.351296 tig0015859:-15081 None:intergenic
TTTATGTGTCTCCATATAGA+AGG 0.355808 tig0015859:-14586 Msa1356730:CDS
CGGATTAGAGAACAAGATTT+CGG 0.376273 tig0015859:-14491 Msa1356730:intron
CTAAGAGCAGATATTAATAT+TGG 0.377004 tig0015859:-13783 Msa1356730:CDS
AGAATTATTCTTCTAGGCCT+TGG 0.386052 tig0015859:+14776 None:intergenic
TCAGCCGCGGATTCTCCATT+TGG 0.396755 tig0015859:+14274 None:intergenic
CGAGAGTGGTAGTGATGTTA+TGG 0.399410 tig0015859:+15003 None:intergenic
AGGGTACCTGATCCCAAAAT+AGG 0.433029 tig0015859:-14704 Msa1356730:CDS
AGAATAATTCGAATTAGTGT+TGG 0.445094 tig0015859:+14949 None:intergenic
CAATATAATGCTCGATGCAT+TGG 0.458377 tig0015859:-12859 Msa1356730:three_prime_UTR
CAACGTTGGAGGCTAGTAAA+GGG 0.458660 tig0015859:+14810 None:intergenic
AGGCGAGCTTGTCATGGAAA+AGG 0.462117 tig0015859:-13619 Msa1356730:CDS
AAAATAGGCCTCACAAATAG+AGG 0.464701 tig0015859:-14689 Msa1356730:CDS
GAATAATTCGAATTAGTGTT+GGG 0.466868 tig0015859:+14950 None:intergenic
AATTTCAATCATTGTTGTGT+AGG 0.468569 tig0015859:-12678 Msa1356730:three_prime_UTR
TTGTTGGTTAGTGAATCTAC+AGG 0.473287 tig0015859:+14875 None:intergenic
CACATCAAAATTCTTCTCCC+CGG 0.485925 tig0015859:+13746 None:intergenic
AGCAATTCTTGAACGTTCAA+AGG 0.486540 tig0015859:+14532 None:intergenic
CCTGGTATGTCCATTGTTGT+TGG 0.490735 tig0015859:+14859 None:intergenic
CAGTCGTAATTCAGATCAGC+AGG 0.495868 tig0015859:+12978 None:intergenic
TTCATGAAGATGAGGAAAGA+AGG 0.501116 tig0015859:+12941 None:intergenic
ACATCAAAATTCTTCTCCCC+GGG 0.506903 tig0015859:+13747 None:intergenic
CTTGTCATGGAAAAGGGTTA+TGG 0.507893 tig0015859:-13612 Msa1356730:CDS
GCAATTCTTGAACGTTCAAA+GGG 0.518725 tig0015859:+14533 None:intergenic
ATTATTCTTCTAGGCCTTGG+AGG 0.521959 tig0015859:+14779 None:intergenic
GGCGAGCTTGTCATGGAAAA+GGG 0.526104 tig0015859:-13618 Msa1356730:CDS
TCAACGTTGGAGGCTAGTAA+AGG 0.527993 tig0015859:+14809 None:intergenic
CAATGGAGGCGAGCTTGTCA+TGG 0.534795 tig0015859:-13625 Msa1356730:CDS
TTTGCTTCTTCATGAAGATG+AGG 0.541787 tig0015859:+12933 None:intergenic
GATGTATATGATAGAATCAC+AGG 0.543118 tig0015859:-14253 Msa1356730:intron
TTATATTAATCACCATGCTA+AGG 0.547846 tig0015859:-12628 Msa1356730:three_prime_UTR
TAGGCCTCACAAATAGAGGT+AGG 0.550075 tig0015859:-14685 Msa1356730:CDS
TAGAGGTAGGGTTCAAGCAG+AGG 0.554848 tig0015859:-14672 Msa1356730:CDS
AGGTACTACATCAACGTTGG+AGG 0.554951 tig0015859:+14799 None:intergenic
AAATGCTGATTGATCAAGAA+TGG 0.556731 tig0015859:-13112 Msa1356730:intron
CACTATTAAAATCCTTAGCA+TGG 0.559516 tig0015859:+12616 None:intergenic
CTGGATTCAGAGAAGAGCCT+CGG 0.566562 tig0015859:-14511 Msa1356730:CDS
TGGAAAAGGGTTATGGTGGA+AGG 0.567955 tig0015859:-13605 Msa1356730:intron
TGTGAAGGCATAAATTTGCA+AGG 0.571714 tig0015859:-13001 Msa1356730:intron
ATGGACGGTTGAACAATTCG+AGG 0.572004 tig0015859:-13664 Msa1356730:CDS
GAACCCTACCTCTATTTGTG+AGG 0.573197 tig0015859:+14681 None:intergenic
AGAATAATTCTTGTTAGACA+TGG 0.574414 tig0015859:-14764 Msa1356730:CDS
CATAACATCACTACCACTCT+CGG 0.582663 tig0015859:-15002 Msa1356730:CDS
GGAAAGAAGGAATTCACCAT+TGG 0.584379 tig0015859:+12954 None:intergenic
TTAGACATGGAGAGAGTGAA+GGG 0.586434 tig0015859:-14751 Msa1356730:CDS
CCAACAACAATGGACATACC+AGG 0.588771 tig0015859:-14859 Msa1356730:CDS
TGTTGGTTAGTGAATCTACA+GGG 0.593467 tig0015859:+14876 None:intergenic
AACTTGGTCATCGTGTCACA+TGG 0.596674 tig0015859:-13723 Msa1356730:CDS
AGGCCTCACAAATAGAGGTA+GGG 0.600664 tig0015859:-14684 Msa1356730:CDS
GTTAGACATGGAGAGAGTGA+AGG 0.602338 tig0015859:-14752 Msa1356730:CDS
TATGAGATGGTATAAATGGA+CGG 0.602499 tig0015859:-13679 Msa1356730:CDS
TCAAAATTCTTCTCCCCGGG+TGG 0.603303 tig0015859:+13750 None:intergenic
TTCTGTTGAGATACCGAGAG+TGG 0.613044 tig0015859:+14989 None:intergenic
ATTGGACGGTATCAGCCACC+CGG 0.616558 tig0015859:-13765 Msa1356730:CDS
GCTAGTAAAGGGTTTATCAG+AGG 0.616669 tig0015859:+14821 None:intergenic
AGGGTTCAAGCAGAGGAATG+TGG 0.617736 tig0015859:-14665 Msa1356730:CDS
TGGAGAGAGTGAAGGGAACG+TGG 0.618176 tig0015859:-14744 Msa1356730:CDS
TTGGACGGTATCAGCCACCC+GGG 0.618733 tig0015859:-13764 Msa1356730:CDS
GTCATGGAAAAGGGTTATGG+TGG 0.622098 tig0015859:-13609 Msa1356730:CDS
GATTCACTAACCAACAACAA+TGG 0.627276 tig0015859:-14869 Msa1356730:CDS
GAGCAGATATTAATATTGGA+CGG 0.627676 tig0015859:-13779 Msa1356730:CDS
TGGAGGTACTACATCAACGT+TGG 0.645433 tig0015859:+14796 None:intergenic
AATGCTCGATGCATTGGCGA+CGG 0.648828 tig0015859:-12853 Msa1356730:three_prime_UTR
ACGTTGATGTAGTACCTCCA+AGG 0.654374 tig0015859:-14793 Msa1356730:CDS
AAATCTTGTTCTCTAATCCG+AGG 0.657767 tig0015859:+14494 None:intergenic
ATATTGCTACAAATTTATGG+CGG 0.663837 tig0015859:+12876 None:intergenic
TGGATGAGAGTGTTTACACA+AGG 0.666652 tig0015859:-14724 Msa1356730:CDS
TGGACGGTTGAACAATTCGA+GGG 0.667400 tig0015859:-13663 Msa1356730:CDS
TCTGAATTACGACTGTCCAA+TGG 0.669531 tig0015859:-12970 Msa1356730:CDS
ATTTCCAAATGGAGAATCCG+CGG 0.680218 tig0015859:-14278 Msa1356730:CDS
TCTATCATATACATCAGCCG+CGG 0.694114 tig0015859:+14261 None:intergenic
TGGACGGTATCAGCCACCCG+GGG 0.707455 tig0015859:-13763 Msa1356730:CDS
GGATGAGAGTGTTTACACAA+GGG 0.722988 tig0015859:-14723 Msa1356730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATACTCATTTTATTTAA+CGG + tig0015859:13531-13550 None:intergenic 15.0%
!!! TTTTCATCATTTGTAAATTA+AGG - tig0015859:14471-14490 Msa1356730:intron 15.0%
!!! TTATATACTGATTTATATGA+TGG - tig0015859:14662-14681 Msa1356730:CDS 15.0%
!! ATTATATTGCTACAAATTTA+TGG + tig0015859:14822-14841 None:intergenic 15.0%
!! AATTGCATTCAAAAATATCA+TGG - tig0015859:12660-12679 Msa1356730:three_prime_UTR 20.0%
!! ATTGCATTCAAAAATATCAT+GGG - tig0015859:12661-12680 Msa1356730:three_prime_UTR 20.0%
!! TTTGTGATTTATGTTATGTA+AGG - tig0015859:13319-13338 Msa1356730:intron 20.0%
!! TTGTGATTTATGTTATGTAA+GGG - tig0015859:13320-13339 Msa1356730:intron 20.0%
!! TATGATTAACAATCTAATGT+TGG - tig0015859:13853-13872 Msa1356730:intron 20.0%
!! TTGTAACATAAACAGAAAAA+AGG - tig0015859:14874-14893 Msa1356730:CDS 20.0%
! GAATAATTCGAATTAGTGTT+GGG + tig0015859:12745-12764 None:intergenic 25.0%
! AGAATAATTCGAATTAGTGT+TGG + tig0015859:12746-12765 None:intergenic 25.0%
! CTAACAAGAATTATTCTTCT+AGG + tig0015859:12925-12944 None:intergenic 25.0%
! AGAATAATTCTTGTTAGACA+TGG - tig0015859:12928-12947 Msa1356730:CDS 25.0%
! AAGAACATGATTGAAAAAGA+TGG - tig0015859:13060-13079 Msa1356730:intron 25.0%
!! AAAAAGATGGTGATGAAAAT+TGG - tig0015859:13073-13092 Msa1356730:intron 25.0%
!! AAGTTTTCTGTCTTGTATAT+TGG - tig0015859:13269-13288 Msa1356730:intron 25.0%
!!! TTCTTTTATCGATTTCCAAA+TGG - tig0015859:13403-13422 Msa1356730:intron 25.0%
! GTAAAGTTAATCAACTGATT+AGG - tig0015859:13548-13567 Msa1356730:intron 25.0%
! CAAGATAGTATATATAACTG+AGG + tig0015859:13634-13653 None:intergenic 25.0%
! CAGTTATATATACTATCTTG+TGG - tig0015859:13634-13653 Msa1356730:CDS 25.0%
! ATCAATAGAGTGTATAAAGT+CGG + tig0015859:13705-13724 None:intergenic 25.0%
! ACTCTATTGATAAATATGAC+CGG - tig0015859:13714-13733 Msa1356730:CDS 25.0%
! AATCATACTTGAATATTGCA+TGG + tig0015859:13840-13859 None:intergenic 25.0%
! TGGATTTGATATTGATACAT+AGG - tig0015859:13873-13892 Msa1356730:intron 25.0%
! CTAAGAGCAGATATTAATAT+TGG - tig0015859:13909-13928 Msa1356730:intron 25.0%
!! TTAGAGTTTTTCTTATGAGA+TGG - tig0015859:14000-14019 Msa1356730:intron 25.0%
! TTCTTATGAGATGGTATAAA+TGG - tig0015859:14009-14028 Msa1356730:intron 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + tig0015859:14279-14298 None:intergenic 25.0%
! TTCCACATTACAAATTTAAC+AGG - tig0015859:14499-14518 Msa1356730:CDS 25.0%
! TACCTGTTAAATTTGTAATG+TGG + tig0015859:14504-14523 None:intergenic 25.0%
! ATGAGAAACTATGAGTAATT+AGG + tig0015859:14624-14643 None:intergenic 25.0%
! ATATTGCTACAAATTTATGG+CGG + tig0015859:14819-14838 None:intergenic 25.0%
! AATTTCAATCATTGTTGTGT+AGG - tig0015859:15014-15033 Msa1356730:CDS 25.0%
! TTATATTAATCACCATGCTA+AGG - tig0015859:15064-15083 Msa1356730:five_prime_UTR 25.0%
! TTTATCAGAGGATTTTTCTC+TGG + tig0015859:12862-12881 None:intergenic 30.0%
TTTATGTGTCTCCATATAGA+AGG - tig0015859:13106-13125 Msa1356730:intron 30.0%
ACAAGACAGAAAACTTAACT+AGG + tig0015859:13265-13284 None:intergenic 30.0%
GATGTATATGATAGAATCAC+AGG - tig0015859:13439-13458 Msa1356730:intron 30.0%
GTCGGTTATTATTGTTTGTT+CGG + tig0015859:13687-13706 None:intergenic 30.0%
TAAATAAAAGTCTGCGATCA+AGG + tig0015859:13808-13827 None:intergenic 30.0%
GAGCAGATATTAATATTGGA+CGG - tig0015859:13913-13932 Msa1356730:intron 30.0%
!! GAAGAATTTTGATGTGAACT+TGG - tig0015859:13953-13972 Msa1356730:intron 30.0%
TATGAGATGGTATAAATGGA+CGG - tig0015859:14013-14032 Msa1356730:intron 30.0%
! AAATGCTGATTGATCAAGAA+TGG - tig0015859:14580-14599 Msa1356730:CDS 30.0%
ATATGATGGTCAATTTGTGA+AGG - tig0015859:14676-14695 Msa1356730:CDS 30.0%
! TGTTGGTTAGTGAATCTACA+GGG + tig0015859:12819-12838 None:intergenic 35.0%
! TTGTTGGTTAGTGAATCTAC+AGG + tig0015859:12820-12839 None:intergenic 35.0%
GATTCACTAACCAACAACAA+TGG - tig0015859:12823-12842 Msa1356730:three_prime_UTR 35.0%
AGAATTATTCTTCTAGGCCT+TGG + tig0015859:12919-12938 None:intergenic 35.0%
! CTATTTGTGAGGCCTATTTT+GGG + tig0015859:13003-13022 None:intergenic 35.0%
! TCTATTTGTGAGGCCTATTT+TGG + tig0015859:13004-13023 None:intergenic 35.0%
AAAATAGGCCTCACAAATAG+AGG - tig0015859:13003-13022 Msa1356730:intron 35.0%
GCAATTCTTGAACGTTCAAA+GGG + tig0015859:13162-13181 None:intergenic 35.0%
AGCAATTCTTGAACGTTCAA+AGG + tig0015859:13163-13182 None:intergenic 35.0%
TTTGAACGTTCAAGAATTGC+TGG - tig0015859:13162-13181 Msa1356730:CDS 35.0%
AAATCTTGTTCTCTAATCCG+AGG + tig0015859:13201-13220 None:intergenic 35.0%
! CGGATTAGAGAACAAGATTT+CGG - tig0015859:13201-13220 Msa1356730:intron 35.0%
!! CAACTGATTAGGTTTGTTAG+AGG - tig0015859:13559-13578 Msa1356730:intron 35.0%
!! TAGGTTTGTTAGAGGTAGTT+AGG - tig0015859:13567-13586 Msa1356730:intron 35.0%
TTATTGTTTGTTCGGCTCAA+TGG + tig0015859:13679-13698 None:intergenic 35.0%
TGACTATAATTGAGGTTCAC+CGG + tig0015859:13736-13755 None:intergenic 35.0%
AAACATCAGTTGCTATAGAG+AGG + tig0015859:14130-14149 None:intergenic 35.0%
TCTCTATAGCAACTGATGTT+TGG - tig0015859:14129-14148 Msa1356730:intron 35.0%
GAACAAGAGTTAAGACAGTT+TGG - tig0015859:14546-14565 Msa1356730:CDS 35.0%
! TGTGAAGGCATAAATTTGCA+AGG - tig0015859:14691-14710 Msa1356730:CDS 35.0%
TTCATGAAGATGAGGAAAGA+AGG + tig0015859:14754-14773 None:intergenic 35.0%
TTTGCTTCTTCATGAAGATG+AGG + tig0015859:14762-14781 None:intergenic 35.0%
CAAACAGAAGCCAACAAAAA+GGG - tig0015859:14778-14797 Msa1356730:CDS 35.0%
! TAGTTCACTACCCTTTTTGT+TGG + tig0015859:14791-14810 None:intergenic 35.0%
CAATATAATGCTCGATGCAT+TGG - tig0015859:14833-14852 Msa1356730:CDS 35.0%
CATCATCATCATCATGAATG+TGG - tig0015859:14975-14994 Msa1356730:CDS 35.0%
CATAACATCACTACCACTCT+CGG - tig0015859:12690-12709 Msa1356730:three_prime_UTR 40.0%
!!! CTTTTTGGCTGTGACAACAT+TGG + tig0015859:12795-12814 None:intergenic 40.0%
! GTGAATCTACAGGGTCTTTT+TGG + tig0015859:12810-12829 None:intergenic 40.0%
!! AGGATTTTTCTCTGGAAACC+TGG + tig0015859:12854-12873 None:intergenic 40.0%
GCTAGTAAAGGGTTTATCAG+AGG + tig0015859:12874-12893 None:intergenic 40.0%
ATTATTCTTCTAGGCCTTGG+AGG + tig0015859:12916-12935 None:intergenic 40.0%
TTAGACATGGAGAGAGTGAA+GGG - tig0015859:12941-12960 Msa1356730:CDS 40.0%
!! TGGATGAGAGTGTTTACACA+AGG - tig0015859:12968-12987 Msa1356730:CDS 40.0%
!! GGATGAGAGTGTTTACACAA+GGG - tig0015859:12969-12988 Msa1356730:CDS 40.0%
GTTTCGAGAGTCCTTCTATA+TGG + tig0015859:13120-13139 None:intergenic 40.0%
AAAGCGCAACGTCATCTTTA+TGG - tig0015859:13376-13395 Msa1356730:intron 40.0%
ATTTCCAAATGGAGAATCCG+CGG - tig0015859:13414-13433 Msa1356730:intron 40.0%
TCTATCATATACATCAGCCG+CGG + tig0015859:13434-13453 None:intergenic 40.0%
GGCTAAATCACAACTGAACT+TGG - tig0015859:13588-13607 Msa1356730:intron 40.0%
AACCTCAATTATAGTCACGC+TGG - tig0015859:13739-13758 Msa1356730:CDS 40.0%
ACCTCAATTATAGTCACGCT+GGG - tig0015859:13740-13759 Msa1356730:CDS 40.0%
ACATCAAAATTCTTCTCCCC+GGG + tig0015859:13948-13967 None:intergenic 40.0%
CACATCAAAATTCTTCTCCC+CGG + tig0015859:13949-13968 None:intergenic 40.0%
! TTCGAGGGTCTCAACAATTT+TGG - tig0015859:14044-14063 Msa1356730:intron 40.0%
!! GGTCTCAACAATTTTGGCAA+TGG - tig0015859:14050-14069 Msa1356730:intron 40.0%
!! CTCAACAATTTTGGCAATGG+AGG - tig0015859:14053-14072 Msa1356730:intron 40.0%
CTTGTCATGGAAAAGGGTTA+TGG - tig0015859:14080-14099 Msa1356730:intron 40.0%
AGCAACTGATGTTTGGTATC+TGG - tig0015859:14136-14155 Msa1356730:intron 40.0%
ATGTACACGACATTGATACG+TGG + tig0015859:14416-14435 None:intergenic 40.0%
TCTGAATTACGACTGTCCAA+TGG - tig0015859:14722-14741 Msa1356730:CDS 40.0%
GGAAAGAAGGAATTCACCAT+TGG + tig0015859:14741-14760 None:intergenic 40.0%
GCAAACAGAAGCCAACAAAA+AGG - tig0015859:14777-14796 Msa1356730:CDS 40.0%
! CGAGAGTGGTAGTGATGTTA+TGG + tig0015859:12692-12711 None:intergenic 45.0%
TTCTGTTGAGATACCGAGAG+TGG + tig0015859:12706-12725 None:intergenic 45.0%
CCTGGTATGTCCATTGTTGT+TGG + tig0015859:12836-12855 None:intergenic 45.0%
CCAACAACAATGGACATACC+AGG - tig0015859:12833-12852 Msa1356730:three_prime_UTR 45.0%
CAACGTTGGAGGCTAGTAAA+GGG + tig0015859:12885-12904 None:intergenic 45.0%
TCAACGTTGGAGGCTAGTAA+AGG + tig0015859:12886-12905 None:intergenic 45.0%
AGGTACTACATCAACGTTGG+AGG + tig0015859:12896-12915 None:intergenic 45.0%
!! TGGAGGTACTACATCAACGT+TGG + tig0015859:12899-12918 None:intergenic 45.0%
ACGTTGATGTAGTACCTCCA+AGG - tig0015859:12899-12918 Msa1356730:exon 45.0%
GTTAGACATGGAGAGAGTGA+AGG - tig0015859:12940-12959 Msa1356730:CDS 45.0%
! AGGGTACCTGATCCCAAAAT+AGG - tig0015859:12988-13007 Msa1356730:CDS 45.0%
TAGGCCTCACAAATAGAGGT+AGG - tig0015859:13007-13026 Msa1356730:intron 45.0%
AGGCCTCACAAATAGAGGTA+GGG - tig0015859:13008-13027 Msa1356730:intron 45.0%
GAACCCTACCTCTATTTGTG+AGG + tig0015859:13014-13033 None:intergenic 45.0%
CCTCAATTATAGTCACGCTG+GGG - tig0015859:13741-13760 Msa1356730:CDS 45.0%
CTCAATTATAGTCACGCTGG+GGG - tig0015859:13742-13761 Msa1356730:CDS 45.0%
AACTTGGTCATCGTGTCACA+TGG - tig0015859:13969-13988 Msa1356730:intron 45.0%
ATGGACGGTTGAACAATTCG+AGG - tig0015859:14028-14047 Msa1356730:intron 45.0%
TGGACGGTTGAACAATTCGA+GGG - tig0015859:14029-14048 Msa1356730:intron 45.0%
GTCATGGAAAAGGGTTATGG+TGG - tig0015859:14083-14102 Msa1356730:intron 45.0%
! TGGAAAAGGGTTATGGTGGA+AGG - tig0015859:14087-14106 Msa1356730:intron 45.0%
TACAAGTGTCAGTGTCGTGT+CGG - tig0015859:14321-14340 Msa1356730:CDS 45.0%
CAGTCGTAATTCAGATCAGC+AGG + tig0015859:14717-14736 None:intergenic 45.0%
!!! GTGAGGCCTATTTTGGGATC+AGG + tig0015859:12997-13016 None:intergenic 50.0%
TAGAGGTAGGGTTCAAGCAG+AGG - tig0015859:13020-13039 Msa1356730:intron 50.0%
AGGGTTCAAGCAGAGGAATG+TGG - tig0015859:13027-13046 Msa1356730:intron 50.0%
CTGGATTCAGAGAAGAGCCT+CGG - tig0015859:13181-13200 Msa1356730:intron 50.0%
GGCTCAATGGCAACAAAGCA+TGG + tig0015859:13666-13685 None:intergenic 50.0%
CCCCAGCGTGACTATAATTG+AGG + tig0015859:13744-13763 None:intergenic 50.0%
TCAAAATTCTTCTCCCCGGG+TGG + tig0015859:13945-13964 None:intergenic 50.0%
AGGCGAGCTTGTCATGGAAA+AGG - tig0015859:14073-14092 Msa1356730:intron 50.0%
GGCGAGCTTGTCATGGAAAA+GGG - tig0015859:14074-14093 Msa1356730:intron 50.0%
GTGTGTCCACCTATGAAGCA+CGG - tig0015859:14212-14231 Msa1356730:intron 50.0%
CCACCTATGAAGCACGGATA+CGG - tig0015859:14218-14237 Msa1356730:intron 50.0%
TGTCCGTATCCGTGCTTCAT+AGG + tig0015859:14224-14243 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+CGG - tig0015859:14224-14243 Msa1356730:intron 50.0%
TATGAAGCACGGACACTCCT+CGG + tig0015859:14388-14407 None:intergenic 50.0%
ACGTGGACACCTATGAAGCA+CGG + tig0015859:14399-14418 None:intergenic 50.0%
! AATGCTCGATGCATTGGCGA+CGG - tig0015859:14839-14858 Msa1356730:CDS 50.0%
TGGAGAGAGTGAAGGGAACG+TGG - tig0015859:12948-12967 Msa1356730:CDS 55.0%
TCAGCCGCGGATTCTCCATT+TGG + tig0015859:13421-13440 None:intergenic 55.0%
ATTGGACGGTATCAGCCACC+CGG - tig0015859:13927-13946 Msa1356730:intron 55.0%
CAATGGAGGCGAGCTTGTCA+TGG - tig0015859:14067-14086 Msa1356730:intron 55.0%
CCGTATCCGTGCTTCATAGG+TGG + tig0015859:14221-14240 None:intergenic 55.0%
! TGTCAGTGTCGTGTCGGTGT+CGG - tig0015859:14327-14346 Msa1356730:CDS 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG - tig0015859:14387-14406 Msa1356730:intron 55.0%
TTGGACGGTATCAGCCACCC+GGG - tig0015859:13928-13947 Msa1356730:intron 60.0%
ACGGATACGGACACGGACAC+CGG - tig0015859:14231-14250 Msa1356730:intron 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG + tig0015859:14253-14272 None:intergenic 60.0%
GATTAGGCGTGTCCCGGTGT+CGG + tig0015859:14366-14385 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG + tig0015859:14372-14391 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG + tig0015859:14382-14401 None:intergenic 60.0%
TGGACGGTATCAGCCACCCG+GGG - tig0015859:13929-13948 Msa1356730:intron 65.0%
CACGGACACCGGACACGACA+CGG - tig0015859:14242-14261 Msa1356730:intron 65.0%
ACGCGACACGTGTCCGACAC+CGG - tig0015859:14350-14369 Msa1356730:CDS 65.0%
ACCGGGACACGCCTAATCCG+AGG - tig0015859:14368-14387 Msa1356730:intron 65.0%
CGCGACACGTGTCCGACACC+GGG - tig0015859:14351-14370 Msa1356730:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0015859 gene 12623 15091 12623 ID=Msa1356730;Name=Msa1356730
tig0015859 mRNA 12623 15091 12623 ID=Msa1356730-mRNA-1;Parent=Msa1356730;Name=Msa1356730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=56|1|1|1|1|1|5|288|354
tig0015859 exon 12623 13016 12623 ID=Msa1356730-mRNA-1:exon:10120;Parent=Msa1356730-mRNA-1
tig0015859 exon 13113 13193 13113 ID=Msa1356730-mRNA-1:exon:10119;Parent=Msa1356730-mRNA-1
tig0015859 exon 13606 13819 13606 ID=Msa1356730-mRNA-1:exon:10118;Parent=Msa1356730-mRNA-1
tig0015859 exon 14254 14373 14254 ID=Msa1356730-mRNA-1:exon:10117;Parent=Msa1356730-mRNA-1
tig0015859 exon 14492 15091 14492 ID=Msa1356730-mRNA-1:exon:10116;Parent=Msa1356730-mRNA-1
tig0015859 five_prime_UTR 15036 15091 15036 ID=Msa1356730-mRNA-1:five_prime_utr;Parent=Msa1356730-mRNA-1
tig0015859 CDS 14492 15035 14492 ID=Msa1356730-mRNA-1:cds;Parent=Msa1356730-mRNA-1
tig0015859 CDS 14254 14373 14254 ID=Msa1356730-mRNA-1:cds;Parent=Msa1356730-mRNA-1
tig0015859 CDS 13606 13819 13606 ID=Msa1356730-mRNA-1:cds;Parent=Msa1356730-mRNA-1
tig0015859 CDS 13113 13193 13113 ID=Msa1356730-mRNA-1:cds;Parent=Msa1356730-mRNA-1
tig0015859 CDS 12911 13016 12911 ID=Msa1356730-mRNA-1:cds;Parent=Msa1356730-mRNA-1
tig0015859 three_prime_UTR 12623 12910 12623 ID=Msa1356730-mRNA-1:three_prime_utr;Parent=Msa1356730-mRNA-1
Gene Sequence

>Msa1356730

ATGGGCATTGCCATAACATCACTACCACTCTCGGTATCTCAACAGAAACATCTTAAAATCAAACCCAACACTAATTCGAATTATTCTAAGACTAACAACACATACTTACTAATCCAATGTTGTCACAGCCAAAAAGACCCTGTAGATTCACTAACCAACAACAATGGACATACCAGGTTTCCAGAGAAAAATCCTCTGATAAACCCTTTACTAGCCTCCAACGTTGATGTAGTACCTCCAAGGCCTAGAAGAATAATTCTTGTTAGACATGGAGAGAGTGAAGGGAACGTGGATGAGAGTGTTTACACAAGGGTACCTGATCCCAAAATAGGCCTCACAAATAGAGGTAGGGTTCAAGCAGAGGAATGTGGACAAAGAATCAAGAACATGATTGAAAAAGATGGTGATGAAAATTGGCAACTCTATTTTTATGTGTCTCCATATAGAAGGACTCTCGAAACTTTGCAAAGCTTAGCTCGTCCCTTTGAACGTTCAAGAATTGCTGGATTCAGAGAAGAGCCTCGGATTAGAGAACAAGATTTCGGGAATTTTCAAAATAGAGAGTTGATGAAAGTTGAAAAAGCGCAACGTCATCTTTATGGTCGTTTCTTTTATCGATTTCCAAATGGAGAATCCGCGGCTGATGTATATGATAGAATCACAGGATTTAGAGAAACACTAAGAGCAGATATTAATATTGGACGGTATCAGCCACCCGGGGAGAAGAATTTTGATGTGAACTTGGTCATCGTGTCACATGGTTTAACGCTTAGAGTTTTTCTTATGAGATGGTATAAATGGACGGTTGAACAATTCGAGGGTCTCAACAATTTTGGCAATGGAGGCGAGCTTGTCATGGAAAAGGGTTATGGTGGAAGGTATAGCTTATCAATGCATCATGATGAACAAGAGTTAAGACAGTTTGGATTGACTGATGAAATGCTGATTGATCAAGAATGGCATAAATTTGCAAGGCCTGCTGATCTGAATTACGACTGTCCAATGGTGAATTCCTTCTTTCCTCATCTTCATGAAGAAGCAAACAGAAGCCAACAAAAAGGGTAG

Protein sequence

>Msa1356730

MGIAITSLPLSVSQQKHLKIKPNTNSNYSKTNNTYLLIQCCHSQKDPVDSLTNNNGHTRFPEKNPLINPLLASNVDVVPPRPRRIILVRHGESEGNVDESVYTRVPDPKIGLTNRGRVQAEECGQRIKNMIEKDGDENWQLYFYVSPYRRTLETLQSLARPFERSRIAGFREEPRIREQDFGNFQNRELMKVEKAQRHLYGRFFYRFPNGESAADVYDRITGFRETLRADINIGRYQPPGEKNFDVNLVIVSHGLTLRVFLMRWYKWTVEQFEGLNNFGNGGELVMEKGYGGRYSLSMHHDEQELRQFGLTDEMLIDQEWHKFARPADLNYDCPMVNSFFPHLHEEANRSQQKG*