AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459630 MtrunA17_Chr3g0121931 95.833 720 28 2 1 718 1 720 0.0 1432
Msa1459630 MtrunA17_Chr3g0121951 81.793 725 115 7 1 718 1 715 0.0 1203
Msa1459630 MtrunA17_Chr8g0377991 73.361 732 173 7 1 718 1 724 0.0 1084
Msa1459630 MtrunA17_Chr1g0205711 26.466 631 382 16 107 717 116 684 5.94e-54 197
Msa1459630 MtrunA17_Chr1g0194371 28.401 669 388 21 81 718 46 654 3.18e-52 192
Msa1459630 MtrunA17_Chr7g0270221 26.412 655 363 19 81 710 46 606 1.76e-47 178
Msa1459630 MtrunA17_Chr5g0396691 27.151 674 389 25 81 718 48 655 4.00e-46 174
Msa1459630 MtrunA17_Chr1g0162621 25.668 674 398 24 81 718 48 654 5.68e-46 174
Msa1459630 MtrunA17_Chr4g0034181 25.778 675 395 24 81 718 47 652 5.10e-45 171
Msa1459630 MtrunA17_Chr5g0396711 26.786 672 394 25 81 718 48 655 6.12e-44 168
Msa1459630 MtrunA17_Chr1g0160041 25.781 640 393 18 107 717 108 694 2.22e-41 161
Msa1459630 MtrunA17_Chr8g0388081 25.545 642 381 23 108 718 19 594 4.08e-41 159
Msa1459630 MtrunA17_Chr3g0120731 25.234 642 395 21 108 717 138 726 4.15e-40 157
Msa1459630 MtrunA17_Chr3g0124631 24.394 660 381 20 107 717 106 696 7.56e-35 141
Msa1459630 MtrunA17_Chr2g0334131 28.731 268 141 9 453 708 50 279 8.72e-20 90.5
Msa1459630 MtrunA17_Chr3g0116251 28.926 363 170 15 248 604 190 470 3.10e-19 92.0
Msa1459630 MtrunA17_Chr4g0028411 29.167 240 134 6 476 713 337 542 1.19e-18 90.1
Msa1459630 MtrunA17_Chr3g0116271 39.490 157 78 5 453 604 328 472 4.32e-18 88.6
Msa1459630 MtrunA17_Chr2g0327341 29.648 199 115 4 473 669 331 506 1.11e-17 87.0
Msa1459630 MtrunA17_Chr5g0395431 31.156 199 109 4 473 666 376 551 3.88e-17 85.5
Msa1459630 MtrunA17_Chr4g0039791 33.742 163 93 4 471 630 351 501 8.84e-17 84.3
Msa1459630 MtrunA17_Chr5g0409791 35.088 171 88 7 439 603 328 481 1.19e-16 84.0
Msa1459630 MtrunA17_Chr3g0102411 31.683 202 116 7 470 662 329 517 4.52e-16 82.0
Msa1459630 MtrunA17_Chr1g0157401 33.149 181 106 4 452 628 329 498 1.19e-15 80.9
Msa1459630 MtrunA17_Chr5g0409771 32.000 175 99 5 462 630 335 495 3.86e-15 79.0
Msa1459630 MtrunA17_Chr4g0072561 27.273 198 117 4 473 666 338 512 4.15e-14 75.9
Msa1459630 MtrunA17_Chr1g0180541 29.126 206 117 6 455 642 316 510 5.00e-14 75.5
Msa1459630 MtrunA17_Chr1g0186071 38.095 147 75 6 475 618 351 484 9.08e-14 74.7
Msa1459630 MtrunA17_Chr1g0180551 30.625 160 96 3 475 630 413 561 1.80e-13 73.9
Msa1459630 MtrunA17_Chr1g0197391 32.515 163 92 4 471 628 355 504 8.69e-13 71.6
Msa1459630 MtrunA17_Chr4g0000461 27.007 274 152 9 453 715 308 544 1.22e-12 71.2
Msa1459630 MtrunA17_Chr8g0353341 29.348 184 105 5 452 626 332 499 4.51e-11 65.9
Msa1459630 MtrunA17_Chr5g0433231 25.328 229 114 7 430 626 278 481 9.66e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459630 AT3G23790.1 68.035 682 211 4 41 718 44 722 0.0 991
Msa1459630 AT4G14070.1 64.930 710 230 5 12 717 32 726 0.0 967
Msa1459630 AT5G27600.1 27.918 634 373 14 105 717 117 687 1.51e-57 208
Msa1459630 AT1G49430.1 27.812 640 379 19 103 717 76 657 2.11e-55 201
Msa1459630 AT2G47240.1 26.577 666 403 20 81 718 46 653 2.98e-53 195
Msa1459630 AT2G47240.2 26.577 666 403 20 81 718 46 653 2.98e-53 195
Msa1459630 AT2G47240.3 26.577 666 403 20 81 718 46 653 2.98e-53 195
Msa1459630 AT2G47240.4 26.316 646 395 19 96 718 7 594 7.08e-52 190
Msa1459630 AT3G05970.1 26.794 627 387 15 107 718 119 688 1.92e-51 191
Msa1459630 AT4G23850.1 25.854 673 399 22 81 718 49 656 7.27e-49 183
Msa1459630 AT4G11030.1 25.849 677 410 23 73 718 41 656 1.18e-48 182
Msa1459630 AT1G64400.1 24.815 677 415 20 74 718 42 656 4.72e-46 175
Msa1459630 AT2G04350.2 26.242 644 386 24 108 717 131 719 1.17e-42 165
Msa1459630 AT2G04350.1 26.242 644 386 24 108 717 131 719 1.17e-42 165
Msa1459630 AT1G77590.1 26.242 644 382 21 107 717 107 690 1.32e-41 162
Msa1459630 AT1G49430.2 28.059 474 276 13 103 558 76 502 5.27e-41 157
Msa1459630 AT1G77590.2 27.572 486 282 18 261 717 100 544 7.89e-33 134
Msa1459630 AT3G21230.3 30.222 225 122 6 452 667 335 533 3.03e-19 92.4
Msa1459630 AT4G05160.1 28.571 252 146 7 425 669 287 511 5.50e-19 91.7
Msa1459630 AT4G05160.1 25.084 299 194 12 82 372 33 309 1.46e-14 77.8
Msa1459630 AT3G21230.1 30.357 224 121 6 452 666 335 532 5.82e-19 91.7
Msa1459630 AT3G21230.2 36.646 161 79 5 452 603 335 481 9.29e-19 90.5
Msa1459630 AT3G21240.1 26.210 248 144 5 473 715 343 556 1.40e-18 90.5
Msa1459630 AT5G63380.1 28.783 337 144 15 243 563 186 442 4.42e-18 89.0
Msa1459630 AT3G21240.2 33.553 152 85 3 473 619 343 483 3.79e-17 85.5
Msa1459630 AT3G21240.3 33.553 152 85 3 473 619 343 483 3.79e-17 85.5
Msa1459630 AT1G20480.1 34.503 171 97 5 452 618 334 493 2.48e-16 83.2
Msa1459630 AT4G19010.1 31.214 173 103 5 462 630 342 502 5.14e-16 82.4
Msa1459630 AT1G65060.1 29.699 266 150 8 412 666 289 528 5.44e-16 82.0
Msa1459630 AT1G51680.3 27.723 202 118 4 473 669 350 528 8.71e-15 78.2
Msa1459630 AT1G21530.2 25.820 244 143 8 401 626 256 479 1.28e-14 77.8
Msa1459630 AT1G20510.1 30.978 184 102 5 452 626 313 480 2.98e-14 76.6
Msa1459630 AT1G20510.1 23.448 290 177 9 86 362 39 296 4.39e-11 66.6
Msa1459630 AT1G21530.1 25.410 244 142 8 401 626 256 477 4.31e-14 76.3
Msa1459630 AT1G20510.2 31.818 176 95 5 452 618 313 472 4.58e-14 75.9
Msa1459630 AT1G20510.2 23.448 290 177 9 86 362 39 296 4.06e-11 66.6
Msa1459630 AT1G51680.1 27.638 199 116 4 473 666 350 525 4.94e-14 75.9
Msa1459630 AT1G51680.2 42.222 90 47 1 473 557 350 439 1.17e-13 74.7
Msa1459630 AT1G21540.1 25.410 244 144 8 401 626 259 482 1.25e-13 74.7
Msa1459630 AT3G48990.1 25.591 254 148 11 459 709 294 509 3.28e-13 73.2
Msa1459630 AT1G66120.1 32.258 186 89 8 452 617 306 474 4.36e-13 73.2
Msa1459630 AT1G20510.3 32.653 147 75 4 452 589 313 444 1.80e-12 70.9
Msa1459630 AT1G20510.3 23.448 290 177 9 86 362 39 296 4.26e-11 66.2
Msa1459630 AT5G16340.1 27.149 221 115 7 452 642 303 507 2.64e-12 70.5
Msa1459630 AT1G65060.2 40.625 96 52 1 473 563 353 448 2.68e-12 70.1
Msa1459630 AT1G65890.1 29.101 189 94 7 452 619 306 475 5.04e-12 69.7
Msa1459630 AT5G16370.1 28.095 210 113 8 429 620 284 473 9.99e-12 68.6
Msa1459630 AT1G75960.1 28.061 196 101 6 452 626 303 479 3.95e-11 66.6
Msa1459630 AT1G20500.1 31.447 159 84 6 454 603 321 463 4.62e-11 66.6
Msa1459630 AT1G68270.1 29.474 190 106 7 452 626 276 452 5.22e-11 66.2
Msa1459630 AT1G65880.1 26.203 187 102 6 452 619 306 475 8.35e-11 65.9

Find 198 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGGAAGTCATAAATTT+TGG 0.092885 tig0040394:-4481 Msa1459630:CDS
GCAATCTGATTATACATTTC+AGG 0.192501 tig0040394:+4607 Msa1459630:intergenic
TCATATGCTGGCAAATAAAT+TGG 0.192941 tig0040394:-3224 Msa1459630:CDS
GGAAAGCAGTTCCTGATATT+TGG 0.194998 tig0040394:-5866 Msa1459630:CDS
ATTGAGGTCTTCAAATAAAA+TGG 0.203541 tig0040394:+4580 Msa1459630:intergenic
ACGTTATAAGCCACATTTAA+TGG 0.209234 tig0040394:-3744 Msa1459630:CDS
AGTAAAATCCGTTCAACTAT+TGG 0.228208 tig0040394:-3196 Msa1459630:CDS
GCTGAGGGGTTGAGAGTTAT+TGG 0.238978 tig0040394:-5062 Msa1459630:CDS
TAACAAAGAAGAAGTCTTAA+AGG 0.239879 tig0040394:-946 Msa1459630:CDS
CAGATTTATTATTCTGCTTT+GGG 0.256893 tig0040394:-4557 Msa1459630:CDS
CATGTTTGAAACAATAAAAT+TGG 0.257278 tig0040394:-4295 Msa1459630:CDS
CTGACTAACATCTGAACTAT+TGG 0.266034 tig0040394:+896 Msa1459630:intergenic
GGAAGGTGATTTCTGATTCT+TGG 0.275282 tig0040394:+3309 Msa1459630:intergenic
CTATAATGACAGATTGATAA+TGG 0.276137 tig0040394:-458 Msa1459630:intron
GAATTCCCGCCATTGGAATT+TGG 0.276280 tig0040394:+6424 Msa1459630:intergenic
TTTAAGACTTCTTCTTTGTT+AGG 0.291375 tig0040394:+948 Msa1459630:intergenic
TCCCCTTTATTAGGAAGTTC+TGG 0.300977 tig0040394:-5915 Msa1459630:CDS
TTGAATTTGCAGAATGGATA+TGG 0.306555 tig0040394:-2764 Msa1459630:CDS
TCAGATTTATTATTCTGCTT+TGG 0.310911 tig0040394:-4558 Msa1459630:CDS
AAAGTTGTAGATTCTGAAAC+TGG 0.332814 tig0040394:-2062 Msa1459630:CDS
TTGCCAGAACTTCCTAATAA+AGG 0.338518 tig0040394:+5912 Msa1459630:intergenic
ATTGCTGGCCACCATTCAAT+TGG 0.343850 tig0040394:-1521 Msa1459630:CDS
TTGAATTCTGTATGCTTAAG+TGG 0.346471 tig0040394:+2083 Msa1459630:intergenic
GGCAGAAGAAGAAGAGATAA+TGG 0.347487 tig0040394:+6445 Msa1459630:intergenic
TAAAATACTATACAGGCTAT+TGG 0.351278 tig0040394:-2788 Msa1459630:intron
ACTTGTATAGATTCTCTATC+TGG 0.356723 tig0040394:+378 Msa1459630:intergenic
TGCCAGAACTTCCTAATAAA+GGG 0.356888 tig0040394:+5913 Msa1459630:intergenic
AAGCCAGCGACACGAGTTAT+CGG 0.363991 tig0040394:+5007 Msa1459630:intergenic
ATTGGGCGGAGTCGTAATTC+TGG 0.364386 tig0040394:-1503 Msa1459630:CDS
CCATTATCGTGCAGGACATC+AGG 0.365896 tig0040394:-607 Msa1459630:intron
TTCTAAGTATGTTGCCTCCT+TGG 0.366326 tig0040394:-3968 Msa1459630:CDS
GCAGAAGTTCTCCAAATATC+AGG 0.367225 tig0040394:+5855 Msa1459630:intergenic
TGTAACATACCATTGACATT+AGG 0.368601 tig0040394:+348 Msa1459630:intergenic
CTACAGATCGGGTCATTGAT+AGG 0.369287 tig0040394:-1577 Msa1459630:CDS
CAGGGTTTCCATTTCAGATT+GGG 0.377327 tig0040394:-588 Msa1459630:CDS
TGACAACAATTTGTTGTATG+AGG 0.378602 tig0040394:+1120 Msa1459630:intergenic
TCCCTTCGAACTTTCATTGT+GGG 0.379570 tig0040394:+425 Msa1459630:intergenic
TGGGTTAGCATAACACCTTT+AGG 0.379716 tig0040394:+4228 Msa1459630:intergenic
GTAAAATCCGTTCAACTATT+GGG 0.386193 tig0040394:-3195 Msa1459630:CDS
TTGGAGCAATCAATGTGGTT+AGG 0.390648 tig0040394:-4705 Msa1459630:CDS
TTGGCTATGGGCAAGAATTA+TGG 0.392307 tig0040394:-3266 Msa1459630:CDS
GGTGATATAGGTTGGATTGC+TGG 0.402662 tig0040394:-1536 Msa1459630:CDS
GACACCATTGTGCTTTCATC+AGG 0.404554 tig0040394:-1449 Msa1459630:intron
TCTATTGTGCCACTGGCATT+AGG 0.407334 tig0040394:+271 Msa1459630:intergenic
TTGCCGATAACTCGTGTCGC+TGG 0.410489 tig0040394:-5010 Msa1459630:CDS
TGGAGCAATCAATGTGGTTA+GGG 0.410509 tig0040394:-4704 Msa1459630:CDS
AGCTCAAACACAGGATCAAA+TGG 0.411118 tig0040394:-316 Msa1459630:three_prime_UTR
TTGTAGTTAGCGGAGGTGAT+AGG 0.412051 tig0040394:+6402 Msa1459630:intergenic
AGTCTAGGCATGATGGCAAT+TGG 0.413657 tig0040394:-4724 Msa1459630:intron
ATACAACAAATTGTTGTCAT+TGG 0.414526 tig0040394:-1116 Msa1459630:CDS
CACTACTGTAAGAAACTTGA+AGG 0.422837 tig0040394:-3886 Msa1459630:intron
GTTATTGCTGCTCGGCGACT+TGG 0.423372 tig0040394:-2722 Msa1459630:CDS
TAGTACCCCTTCATCAATTG+TGG 0.424278 tig0040394:+1993 Msa1459630:intergenic
ATTTGGACATATAGGATAAA+CGG 0.425855 tig0040394:-992 Msa1459630:intron
TTATTTGCCAGCATATGAAC+TGG 0.429494 tig0040394:+3229 Msa1459630:intergenic
AGAACTTCTGCAGAGAAGTA+TGG 0.431246 tig0040394:-5843 Msa1459630:CDS
TTGTCGCTCTCACATTCATA+AGG 0.431494 tig0040394:-3543 Msa1459630:CDS
TACGTACCTTGGATTGAGTA+TGG 0.432463 tig0040394:+6280 Msa1459630:intergenic
AGAAGGTGAAAATGTTGAAC+CGG 0.438102 tig0040394:-1174 Msa1459630:intron
ATAGAGTTATGGCTCAATAC+AGG 0.440234 tig0040394:-403 Msa1459630:CDS
TAATCTAACTATTGTGGTAA+TGG 0.441469 tig0040394:+223 Msa1459630:intergenic
AGGATTGGCCCAATCTGAAA+TGG 0.442047 tig0040394:+580 Msa1459630:intergenic
TTCAACTATGACATACAAAC+AGG 0.442864 tig0040394:-5781 Msa1459630:intron
AGGGATGGCTGGCTGAATAC+TGG 0.447110 tig0040394:-1557 Msa1459630:CDS
ATCTCTATGCAATGTTGGAT+TGG 0.451464 tig0040394:-3285 Msa1459630:CDS
TTCTGCCAAATTCCAATGGC+GGG 0.452045 tig0040394:-6429 Msa1459630:exon
TATAATGACAGATTGATAAT+GGG 0.458531 tig0040394:-457 Msa1459630:intron
CAATAGTTCAGATGTTAGTC+AGG 0.458543 tig0040394:-895 Msa1459630:CDS
ATGCAATGTTGGATTGGCTA+TGG 0.459731 tig0040394:-3279 Msa1459630:CDS
GGTGGTGTGATTGTTGTTGA+AGG 0.461244 tig0040394:-1482 Msa1459630:CDS
TTATAGGTAATTGGATCTGT+GGG 0.463586 tig0040394:-2110 Msa1459630:intron
TGGCTGAATACTGGTGATAT+AGG 0.463723 tig0040394:-1548 Msa1459630:CDS
GTTCTTCCACCTGGTTCAAA+GGG 0.463824 tig0040394:-2035 Msa1459630:CDS
TCAGGGTTTCCATTTCAGAT+TGG 0.464402 tig0040394:-589 Msa1459630:CDS
ACAAATTGTTGTCATTGGTC+AGG 0.465907 tig0040394:-1111 Msa1459630:intron
CCTTGTTTGCTTCATTGACA+AGG 0.466926 tig0040394:+4521 Msa1459630:intergenic
TTGTATGAGGTTACTCCTCA+TGG 0.473965 tig0040394:+1133 Msa1459630:intergenic
CAGGTGGCATACTAGTATCA+TGG 0.476001 tig0040394:+4428 Msa1459630:intergenic
GTATGGTGATAAAGTAGCTT+TGG 0.477399 tig0040394:-5826 Msa1459630:CDS
TCTCGTAAATGATCCCTTCA+CGG 0.477946 tig0040394:-557 Msa1459630:intron
TCAATGTGGTTAGGGGTTCA+AGG 0.478558 tig0040394:-4696 Msa1459630:CDS
CTTCTTCTGCCAAATTCCAA+TGG 0.481407 tig0040394:-6433 Msa1459630:exon
TTGCTGGCCACCATTCAATT+GGG 0.483696 tig0040394:-1520 Msa1459630:CDS
TTCAAAATTCCCTTTGAACC+AGG 0.484352 tig0040394:+2026 Msa1459630:intergenic
TGTTTGTATGTCATAGTTGA+AGG 0.485938 tig0040394:+5783 Msa1459630:intergenic
AGTCGCCGAGCAGCAATAAC+CGG 0.486356 tig0040394:+2725 Msa1459630:intergenic
GCAGCTTCTTCAAGCTCTCC+CGG 0.488586 tig0040394:+1155 Msa1459630:intergenic
GTGTACACAAGTGGTACTAC+TGG 0.489782 tig0040394:-4255 Msa1459630:CDS
ATCCAACATTGCATAGAGAT+AGG 0.490564 tig0040394:+3288 Msa1459630:intergenic
GGATCATTTACGAGAAGGAT+TGG 0.491261 tig0040394:+565 Msa1459630:intergenic
ACTTCCATGAATGTATAGAT+TGG 0.492371 tig0040394:+4493 Msa1459630:intergenic
AGCGGTTGGAGAAACGTTGA+TGG 0.494390 tig0040394:+6320 Msa1459630:intergenic
TACGACTCCGCCCAATTGAA+TGG 0.495276 tig0040394:+1510 Msa1459630:intergenic
CGCTGGCTTGTAGCAGATCA+AGG 0.496198 tig0040394:-4993 Msa1459630:intron
GTGATAGGAATTCCCGCCAT+TGG 0.496343 tig0040394:+6417 Msa1459630:intergenic
CAAAGAAAACGGAGATAAGA+AGG 0.496585 tig0040394:-5941 Msa1459630:CDS
GAAGAGAGGAAGTGAATGGA+TGG 0.497533 tig0040394:+6368 Msa1459630:intergenic
TTTATAGGTAATTGGATCTG+TGG 0.497753 tig0040394:-2111 Msa1459630:intron
TTCCTATCTCTATGCAATGT+TGG 0.497937 tig0040394:-3290 Msa1459630:CDS
GGTGCCAATCTATACATTCA+TGG 0.499931 tig0040394:-4497 Msa1459630:CDS
CGAAGAAGAGAGGAAGTGAA+TGG 0.502851 tig0040394:+6364 Msa1459630:intergenic
ATTGGTTTGAATTTGCAGAA+TGG 0.503914 tig0040394:-2770 Msa1459630:CDS
AGTTCGAAGGGATAGAGTTA+TGG 0.505449 tig0040394:-414 Msa1459630:CDS
AAGGGTCAGCTTAGGATACA+TGG 0.508079 tig0040394:-3524 Msa1459630:CDS
TAGTTCATTATATATTAGAC+TGG 0.513277 tig0040394:+863 Msa1459630:intergenic
GAATCCTTCAGCTACAGATC+GGG 0.514796 tig0040394:-1588 Msa1459630:CDS
AGTTCTTCCACCTGGTTCAA+AGG 0.516190 tig0040394:-2036 Msa1459630:CDS
CAGAATAATAAATCTGATTG+AGG 0.517753 tig0040394:+4564 Msa1459630:intergenic
CAGGGGCCCACAATTGATGA+AGG 0.520046 tig0040394:-2000 Msa1459630:CDS
GACGTTGTACCTACTGAAGC+TGG 0.521458 tig0040394:-3999 Msa1459630:CDS
ATTATATCCAGTTCATATGC+TGG 0.525970 tig0040394:-3236 Msa1459630:CDS
ATCCCTTCGAACTTTCATTG+TGG 0.526009 tig0040394:+424 Msa1459630:intergenic
ACATTCATAAGGGTCAGCTT+AGG 0.528734 tig0040394:-3532 Msa1459630:CDS
GTAAACCAACCTAATGTCAA+TGG 0.530199 tig0040394:-357 Msa1459630:exon
AGTACCCCTTCATCAATTGT+GGG 0.533326 tig0040394:+1994 Msa1459630:intergenic
GTACGAGTCTATTGTGCCAC+TGG 0.537270 tig0040394:+264 Msa1459630:intergenic
AAGAAGAAGAGATAATGGAA+TGG 0.539434 tig0040394:+6450 Msa1459630:intergenic
CCTGATGCAAAAGATTCTGA+TGG 0.540187 tig0040394:+4208 Msa1459630:intergenic
CCTTGTCAATGAAGCAAACA+AGG 0.542961 tig0040394:-4521 Msa1459630:CDS
GTTGATGGTGGTGGTGAAGT+TGG 0.545443 tig0040394:+6335 Msa1459630:intergenic
TACAGATCGGGTCATTGATA+GGG 0.546659 tig0040394:-1576 Msa1459630:CDS
ATGCTTAATCTAACCGTGAA+GGG 0.548255 tig0040394:+544 Msa1459630:intergenic
TTATTAGGAAGTTCTGGCAA+TGG 0.550189 tig0040394:-5909 Msa1459630:CDS
GAAGAGATAATGGAATGGAA+TGG 0.554593 tig0040394:+6455 Msa1459630:intergenic
ATATAGGATAAACGGCGTCT+AGG 0.555187 tig0040394:-984 Msa1459630:intron
CATTATCGTGCAGGACATCA+GGG 0.555530 tig0040394:-606 Msa1459630:intron
AGAATCCTTCAGCTACAGAT+CGG 0.555926 tig0040394:-1589 Msa1459630:CDS
TTTCTAGATCAAACACCTAT+CGG 0.557238 tig0040394:-4021 Msa1459630:intron
TGGTTTAACAGAAACTTCAC+CGG 0.558821 tig0040394:-2744 Msa1459630:CDS
TGTCGCTCTCACATTCATAA+GGG 0.558876 tig0040394:-3542 Msa1459630:CDS
GGTACTACTGGAAATCCTAA+AGG 0.559374 tig0040394:-4243 Msa1459630:CDS
TGGAGAAACGTTGATGGTGG+TGG 0.560310 tig0040394:+6326 Msa1459630:intergenic
ATATATGCAGACAAAGAAAA+CGG 0.560706 tig0040394:-5952 Msa1459630:intron
AACATTGCATAGAGATAGGA+AGG 0.562084 tig0040394:+3292 Msa1459630:intergenic
TATTACTAATCTAACTATTG+TGG 0.562098 tig0040394:+217 Msa1459630:intergenic
TGTGTTTAGTCTAGGCATGA+TGG 0.562670 tig0040394:-4731 Msa1459630:intron
TGAATACTGGTGATATAGGT+TGG 0.564920 tig0040394:-1544 Msa1459630:CDS
GCAAAAGACGCGAAAAGAAG+CGG 0.572267 tig0040394:+6302 Msa1459630:intergenic
TGCAATGTTGGATTGGCTAT+GGG 0.572738 tig0040394:-3278 Msa1459630:CDS
GGGTCATTGATAGGGATGGC+TGG 0.573700 tig0040394:-1568 Msa1459630:CDS
ACATACCATTGACATTAGGT+TGG 0.573803 tig0040394:+352 Msa1459630:intergenic
AGGTGGCATACTAGTATCAT+GGG 0.576477 tig0040394:+4429 Msa1459630:intergenic
AATCTATCTCCAGCTTCAGT+AGG 0.579782 tig0040394:+3990 Msa1459630:intergenic
TTAGGAAGTTCTGGCAATGG+TGG 0.581492 tig0040394:-5906 Msa1459630:CDS
ACTCTGCAGGCTGCAATAAG+TGG 0.583496 tig0040394:-2922 Msa1459630:intron
ACTGGTGAAGTTCTTCCACC+TGG 0.584400 tig0040394:-2044 Msa1459630:CDS
GATGCTTAATCTAACCGTGA+AGG 0.585252 tig0040394:+543 Msa1459630:intergenic
AAGACGCGAAAAGAAGCGGT+TGG 0.588054 tig0040394:+6306 Msa1459630:intergenic
CTGATGCAAAAGATTCTGAT+GGG 0.591884 tig0040394:+4209 Msa1459630:intergenic
GCTACTCTTGTGTACACAAG+TGG 0.593098 tig0040394:-4264 Msa1459630:CDS
CTTCTGCCAAATTCCAATGG+CGG 0.594914 tig0040394:-6430 Msa1459630:exon
AAAATTCCCTTTGAACCAGG+TGG 0.596173 tig0040394:+2029 Msa1459630:intergenic
TGAAGGGATCATTTACGAGA+AGG 0.596427 tig0040394:+560 Msa1459630:intergenic
CAGGCTGCAATAAGTGGTGG+TGG 0.597313 tig0040394:-2916 Msa1459630:CDS
GGAGTGTAAGCGAATTTATG+AGG 0.599610 tig0040394:-3503 Msa1459630:intron
ATGACCCGATCTGTAGCTGA+AGG 0.599985 tig0040394:+1584 Msa1459630:intergenic
TAGAGTTATGGCTCAATACA+GGG 0.601359 tig0040394:-402 Msa1459630:CDS
GATCGGGTCATTGATAGGGA+TGG 0.602012 tig0040394:-1572 Msa1459630:CDS
CACCCACAATGAAAGTTCGA+AGG 0.602481 tig0040394:-427 Msa1459630:CDS
TTGATATCCCAATAGTTGAA+CGG 0.602896 tig0040394:+3188 Msa1459630:intergenic
AGAAGCATAGTTGTAGTTAG+CGG 0.603228 tig0040394:+6392 Msa1459630:intergenic
AATAGTTATAGCTCAAACAC+AGG 0.603943 tig0040394:-325 Msa1459630:three_prime_UTR
ATTGATGAAGGGGTACTACA+AGG 0.604460 tig0040394:-1988 Msa1459630:intron
AGGGGCCCACAATTGATGAA+GGG 0.605207 tig0040394:-1999 Msa1459630:CDS
GTGGTGTGGCTTTAGATGAG+TGG 0.607797 tig0040394:-5887 Msa1459630:CDS
GCCAGAACTTCCTAATAAAG+GGG 0.608078 tig0040394:+5914 Msa1459630:intergenic
TGAAAGTGTTGCACTAGCCG+TGG 0.608469 tig0040394:-4635 Msa1459630:CDS
ATACATTTCAGGATTGTCCA+CGG 0.608619 tig0040394:+4618 Msa1459630:intergenic
AAGTTCTGGCAATGGTGGTG+TGG 0.608793 tig0040394:-5901 Msa1459630:CDS
TTGGTGCGAGCGAAGAAGAG+AGG 0.609535 tig0040394:+6354 Msa1459630:intergenic
AGCATAGTTGTAGTTAGCGG+AGG 0.612067 tig0040394:+6395 Msa1459630:intergenic
GGAACAGAAACCATTAAATG+TGG 0.615318 tig0040394:+3734 Msa1459630:intergenic
GGGGCCCACAATTGATGAAG+GGG 0.617435 tig0040394:-1998 Msa1459630:CDS
GCTCTTTCATATGCATGCCA+AGG 0.618770 tig0040394:+3951 Msa1459630:intergenic
CTGGCCACCATTCAATTGGG+CGG 0.620753 tig0040394:-1517 Msa1459630:CDS
CAGTAGGTACAACGTCCGAT+AGG 0.622532 tig0040394:+4006 Msa1459630:intergenic
AGATTTATTATTCTGCTTTG+GGG 0.624021 tig0040394:-4556 Msa1459630:CDS
GGGCGGAGTCGTAATTCTGG+TGG 0.625225 tig0040394:-1500 Msa1459630:CDS
CTTCACCGGTTATTGCTGCT+CGG 0.626548 tig0040394:-2730 Msa1459630:CDS
ACCCACAATGAAAGTTCGAA+GGG 0.626647 tig0040394:-426 Msa1459630:CDS
GGAGCAATCAATGTGGTTAG+GGG 0.632299 tig0040394:-4703 Msa1459630:CDS
CTTTCATATGCATGCCAAGG+AGG 0.633043 tig0040394:+3954 Msa1459630:intergenic
ATGGTATAACTGTTATCACT+TGG 0.633138 tig0040394:+242 Msa1459630:intergenic
TTCAACTATTGGGATATCAA+CGG 0.641456 tig0040394:-3185 Msa1459630:intron
GAAGGTGAAAATGTTGAACC+GGG 0.643368 tig0040394:-1173 Msa1459630:intron
TTGTATGTCATAGTTGAAGG+AGG 0.649181 tig0040394:+5786 Msa1459630:intergenic
TATAGGTAATTGGATCTGTG+GGG 0.649339 tig0040394:-2109 Msa1459630:intron
TATATAATGAACTAAAGACC+TGG 0.671816 tig0040394:-854 Msa1459630:intron
GACTCCGCCCAATTGAATGG+TGG 0.673251 tig0040394:+1513 Msa1459630:intergenic
CTGCAGGCTGCAATAAGTGG+TGG 0.674796 tig0040394:-2919 Msa1459630:intron
AGCTTGAAGAAGCTGCCATG+AGG 0.677140 tig0040394:-1148 Msa1459630:CDS
GTAAAATTACCTAATGCCAG+TGG 0.694275 tig0040394:-280 Msa1459630:three_prime_UTR
TGGCATACTAGTATCATGGG+AGG 0.703281 tig0040394:+4432 Msa1459630:intergenic
GGTTGGAGAAACGTTGATGG+TGG 0.714958 tig0040394:+6323 Msa1459630:intergenic
CTAGTGCAACACTTTCAGAG+TGG 0.725222 tig0040394:+4641 Msa1459630:intergenic
TGTCAATGAAGCAAACAAGG+AGG 0.744880 tig0040394:-4518 Msa1459630:CDS
GGCAATTGGAGCAATCAATG+TGG 0.764361 tig0040394:-4710 Msa1459630:CDS
TCTACCTGATGAAAGCACAA+TGG 0.784956 tig0040394:+1445 Msa1459620:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATATATAACTAATTTTC+AGG - tig0040394:983-1002 Msa1459630:intron 10.0%
!! AACTATTAATCTATATTATA+GGG + tig0040394:1029-1048 Msa1459630:intergenic 10.0%
!! AAACTATTAATCTATATTAT+AGG + tig0040394:1030-1049 Msa1459630:intergenic 10.0%
!!! ATTTTTTTAAAATACTATAC+AGG - tig0040394:3788-3807 Msa1459630:intron 10.0%
!! AAAAGAAAAATTTATTAAGT+AGG + tig0040394:4269-4288 Msa1459630:intergenic 10.0%
!! TAATGTAAATAATATAAAGA+TGG + tig0040394:6076-6095 Msa1459630:intergenic 10.0%
!! GATATGTAATAATTATGTAT+TGG - tig0040394:541-560 Msa1459630:intron 15.0%
!! TATATACAAAACTTTATGAT+TGG + tig0040394:616-635 Msa1459630:intergenic 15.0%
!!! ATCACTAATTTTATTGTTAT+TGG - tig0040394:865-884 Msa1459630:CDS 15.0%
!!! TCACTAATTTTATTGTTATT+GGG - tig0040394:866-885 Msa1459630:CDS 15.0%
!!! AACATGTTTTATTTTAGAAT+TGG + tig0040394:1735-1754 Msa1459630:intergenic 15.0%
!!! ATTCTAAAATAAAACATGTT+TGG - tig0040394:1735-1754 Msa1459630:intron 15.0%
!! ATGAATATATATTATAGAGA+AGG + tig0040394:2183-2202 Msa1459630:intergenic 15.0%
!! TGTACAAAATTTATTAACAT+TGG + tig0040394:3229-3248 Msa1459630:intergenic 15.0%
!!! ATTTTGTACAATATGTTTAT+AGG - tig0040394:3239-3258 Msa1459630:CDS 15.0%
!!! TTTTGTACAATATGTTTATA+GGG - tig0040394:3240-3259 Msa1459630:CDS 15.0%
!!! ATTTTTAATCTAATTGTACT+TGG + tig0040394:3928-3947 Msa1459630:intergenic 15.0%
!!! AATATTTTGCAATTAACTTA+CGG - tig0040394:5230-5249 Msa1459630:intron 15.0%
!!! TTGTTTTTTTATAGAAGTTG+TGG - tig0040394:350-369 Msa1459630:three_prime_UTR 20.0%
!! TATACAAGACAATTGTAAAA+TGG + tig0040394:414-433 Msa1459630:intergenic 20.0%
!! TTGTCTTGTATAAGATTATA+AGG - tig0040394:422-441 Msa1459630:CDS 20.0%
!!! ATTTGTTGTTATTGTCATAT+TGG - tig0040394:570-589 Msa1459630:CDS 20.0%
!!! AATTTTATTGTTATTGGGTA+TGG - tig0040394:871-890 Msa1459630:CDS 20.0%
!!! GGTTTCTTTTGTTTTATTTT+AGG - tig0040394:1089-1108 Msa1459630:intron 20.0%
!!! TTGTTTTATTTTAGGAGATA+TGG - tig0040394:1097-1116 Msa1459630:intron 20.0%
!! TCAATAATCAAAGTTTCAAA+AGG + tig0040394:1250-1269 Msa1459630:intergenic 20.0%
!! AACTTTGATTATTGAATGTA+TGG - tig0040394:1255-1274 Msa1459630:intron 20.0%
!!! GTATTATTTTTTACTACCAA+AGG - tig0040394:1628-1647 Msa1459630:intron 20.0%
!!! CATGTTTGAAACAATAAAAT+TGG - tig0040394:2288-2307 Msa1459630:intron 20.0%
!! TACAAAGTTTCAAAAACTAA+AGG + tig0040394:2873-2892 Msa1459630:intergenic 20.0%
!!! GTAACATTTGTTTTTGTTTT+TGG - tig0040394:2962-2981 Msa1459630:intron 20.0%
!! AATAACAAATAATGACACTA+TGG + tig0040394:3596-3615 Msa1459630:intergenic 20.0%
!!! TAGTGTCATTATTTGTTATT+TGG - tig0040394:3596-3615 Msa1459630:intron 20.0%
!!! CTTTGAATTCTATCTTTTAT+AGG - tig0040394:4457-4476 Msa1459630:CDS 20.0%
!!! TTCTATCTTTTATAGGTAAT+TGG - tig0040394:4464-4483 Msa1459630:CDS 20.0%
!! ACATGATTATTACTTTCATA+AGG + tig0040394:5378-5397 Msa1459630:intergenic 20.0%
!!! CTTTAAAAAAATTTGGTTCA+AGG - tig0040394:5514-5533 Msa1459630:intron 20.0%
!! ATACAGTTTATATTATACGT+AGG + tig0040394:5540-5559 Msa1459630:intergenic 20.0%
!! TAGTTCATTATATATTAGAC+TGG + tig0040394:5723-5742 Msa1459630:intergenic 20.0%
!!! TATAATGACAGATTGATAAT+GGG - tig0040394:6126-6145 Msa1459630:intron 20.0%
!!! TTAGGTAATTTTACTTGTAT+AGG + tig0040394:6297-6316 Msa1459630:intergenic 20.0%
!! TATTACTAATCTAACTATTG+TGG + tig0040394:6369-6388 Msa1459630:intergenic 20.0%
!!! TTTTTTATAGAAGTTGTGGA+AGG - tig0040394:354-373 Msa1459630:three_prime_UTR 25.0%
!! TTTTTATAGAAGTTGTGGAA+GGG - tig0040394:355-374 Msa1459630:three_prime_UTR 25.0%
! ATATATGCAGACAAAGAAAA+CGG - tig0040394:631-650 Msa1459630:intron 25.0%
!!! AACAGGTTTTTTTTCTTACT+AGG - tig0040394:819-838 Msa1459630:intron 25.0%
! AATTCTTTACACAGAAAGAA+GGG - tig0040394:924-943 Msa1459630:CDS 25.0%
!!! ACTAATTTTCAGGTTTACTT+AGG - tig0040394:993-1012 Msa1459630:intron 25.0%
! TTTAATCAATGATCTTTGTG+TGG - tig0040394:1068-1087 Msa1459630:intron 25.0%
! TTGTCTGAAGATTTATTGAT+AGG - tig0040394:1319-1338 Msa1459630:intron 25.0%
! TGTCTGAAGATTTATTGATA+GGG - tig0040394:1320-1339 Msa1459630:intron 25.0%
! TAAAACATGTTTGGTTAAAG+TGG - tig0040394:1744-1763 Msa1459630:intron 25.0%
! ATTGAGGTCTTCAAATAAAA+TGG + tig0040394:2006-2025 Msa1459630:intergenic 25.0%
! CAGAATAATAAATCTGATTG+AGG + tig0040394:2022-2041 Msa1459630:intergenic 25.0%
! TCAGATTTATTATTCTGCTT+TGG - tig0040394:2025-2044 Msa1459630:CDS 25.0%
! CAGATTTATTATTCTGCTTT+GGG - tig0040394:2026-2045 Msa1459630:CDS 25.0%
! AGATTTATTATTCTGCTTTG+GGG - tig0040394:2027-2046 Msa1459630:CDS 25.0%
!! TTCATGGAAGTCATAAATTT+TGG - tig0040394:2102-2121 Msa1459630:CDS 25.0%
!! TCATGGAAGTCATAAATTTT+GGG - tig0040394:2103-2122 Msa1459630:CDS 25.0%
! TATATTTAAACCTTCATGCA+TGG - tig0040394:2737-2756 Msa1459630:CDS 25.0%
!! CATGTACTATATTTTGTTCT+AGG - tig0040394:2806-2825 Msa1459630:intron 25.0%
!!! TATTTTGTTCTAGGATGATT+TGG - tig0040394:2815-2834 Msa1459630:intron 25.0%
!!! ATTTTGTTCTAGGATGATTT+GGG - tig0040394:2816-2835 Msa1459630:intron 25.0%
!!! TAGTTTTTGAAACTTTGTAC+AGG - tig0040394:2874-2893 Msa1459630:intron 25.0%
!!! AATTTGTTTTGTTCAGCTTT+TGG + tig0040394:3155-3174 Msa1459630:intergenic 25.0%
! CATGATAAAACATGTAAAGT+AGG + tig0040394:3190-3209 Msa1459630:intergenic 25.0%
!! CTACTTTACATGTTTTATCA+TGG - tig0040394:3188-3207 Msa1459630:CDS 25.0%
!!! CATTTTTGTTATTCTCAAAC+AGG - tig0040394:3737-3756 Msa1459630:CDS 25.0%
! TAAAATACTATACAGGCTAT+TGG - tig0040394:3795-3814 Msa1459630:intron 25.0%
! AGAGATATCATGATATAAAC+CGG - tig0040394:4117-4136 Msa1459630:intron 25.0%
!! TTTATCACATGGTAGATTTT+AGG + tig0040394:4163-4182 Msa1459630:intergenic 25.0%
!! TTCTCTACATTTTTATCACA+TGG + tig0040394:4174-4193 Msa1459630:intergenic 25.0%
! TGTAGAGAATAACAATTACT+AGG - tig0040394:4185-4204 Msa1459630:intron 25.0%
!!! GTTTTGTTAAGAAATCAGAA+AGG - tig0040394:4207-4226 Msa1459630:intron 25.0%
!! AATGATGGTTCTACTTAATT+AGG - tig0040394:4233-4252 Msa1459630:CDS 25.0%
! AACATATGATGTAGAATAGA+TGG + tig0040394:4302-4321 Msa1459630:intergenic 25.0%
! AAAAATCGTAACAATTTCGT+TGG - tig0040394:4685-4704 Msa1459630:CDS 25.0%
!! TCAAGTATTTATAAGGTATC+TGG + tig0040394:4768-4787 Msa1459630:intergenic 25.0%
!!! AAGAGTTACTTTCCATTTTT+CGG - tig0040394:5288-5307 Msa1459630:intron 25.0%
! AACAACATAGTTGCAATTAA+GGG + tig0040394:5315-5334 Msa1459630:intergenic 25.0%
! AAACAACATAGTTGCAATTA+AGG + tig0040394:5316-5335 Msa1459630:intergenic 25.0%
! ATACAACAAATTGTTGTCAT+TGG - tig0040394:5467-5486 Msa1459630:intron 25.0%
!!! TTGACGGCTTTAAAAAAATT+TGG - tig0040394:5507-5526 Msa1459630:intron 25.0%
! ATGCAATGATTTCACTTATT+TGG - tig0040394:5574-5593 Msa1459630:intron 25.0%
! TTTCACTTATTTGGACATAT+AGG - tig0040394:5583-5602 Msa1459630:intron 25.0%
! ATTTGGACATATAGGATAAA+CGG - tig0040394:5591-5610 Msa1459630:intron 25.0%
!! TTTAAGACTTCTTCTTTGTT+AGG + tig0040394:5638-5657 Msa1459630:intergenic 25.0%
! TAACAAAGAAGAAGTCTTAA+AGG - tig0040394:5637-5656 Msa1459630:intron 25.0%
! TATATAATGAACTAAAGACC+TGG - tig0040394:5729-5748 Msa1459630:intron 25.0%
! TTTCACTCTCAATAATTTAG+AGG + tig0040394:5883-5902 Msa1459630:intergenic 25.0%
! CATTACAGAATTGACATATT+TGG - tig0040394:6091-6110 Msa1459630:intron 25.0%
! CTATAATGACAGATTGATAA+TGG - tig0040394:6125-6144 Msa1459630:intron 25.0%
! TAATCTAACTATTGTGGTAA+TGG + tig0040394:6363-6382 Msa1459630:intergenic 25.0%
! AAAACAATACAACAAGTTAG+AGG + tig0040394:6424-6443 Msa1459630:intergenic 25.0%
!! AAGAAGAAGAGATAATGGAA+TGG + tig0040394:136-155 Msa0820290:intergenic 30.0%
TCGTTAGTGTTGTGTATTAT+TGG + tig0040394:391-410 Msa1459630:intergenic 30.0%
TGTTTGTATGTCATAGTTGA+AGG + tig0040394:803-822 Msa1459630:intergenic 30.0%
TTCAACTATGACATACAAAC+AGG - tig0040394:802-821 Msa1459630:intron 30.0%
GAATTCTTTACACAGAAAGA+AGG - tig0040394:923-942 Msa1459630:CDS 30.0%
ATTCTTTACACAGAAAGAAG+GGG - tig0040394:925-944 Msa1459630:CDS 30.0%
!!! TAGTTTTGAAGAATAAGCAC+CGG - tig0040394:1044-1063 Msa1459630:intron 30.0%
! CAAAGATCATTGATTAAAGC+CGG + tig0040394:1066-1085 Msa1459630:intergenic 30.0%
!! GAGATATGGTTGAGTTTTAT+TGG - tig0040394:1111-1130 Msa1459630:intron 30.0%
!!! ATATGGTTGAGTTTTATTGG+TGG - tig0040394:1114-1133 Msa1459630:CDS 30.0%
ATTCTTAAACCATTGTCTTG+TGG - tig0040394:1212-1231 Msa1459630:intron 30.0%
ACATATATTCCACAAGACAA+TGG + tig0040394:1224-1243 Msa1459630:intergenic 30.0%
ATTGTCTTGTGGAATATATG+TGG - tig0040394:1223-1242 Msa1459630:intron 30.0%
TTATCCCTTGAAATCTCATT+CGG - tig0040394:1430-1449 Msa1459630:intron 30.0%
TTTCTTACCAACATTTCAGT+TGG - tig0040394:1478-1497 Msa1459630:CDS 30.0%
! TGCAATTTTAAACTTTGCTG+AGG - tig0040394:1505-1524 Msa1459630:CDS 30.0%
! GCAATTTTAAACTTTGCTGA+GGG - tig0040394:1506-1525 Msa1459630:CDS 30.0%
! CAATTTTAAACTTTGCTGAG+GGG - tig0040394:1507-1526 Msa1459630:CDS 30.0%
! AAAAGAGCAATTTTCTCATC+AGG + tig0040394:1554-1573 Msa1459630:intergenic 30.0%
TGATGTGAACTTATTACCTA+CGG - tig0040394:1660-1679 Msa1459630:intron 30.0%
ATTCTTAAAGCATGCAAAGT+CGG - tig0040394:1777-1796 Msa1459630:intron 30.0%
GCAATCTGATTATACATTTC+AGG + tig0040394:1979-1998 Msa1459630:intergenic 30.0%
ACTTCCATGAATGTATAGAT+TGG + tig0040394:2093-2112 Msa1459630:intergenic 30.0%
! ATATATTATAGAGAAGGTGC+AGG + tig0040394:2177-2196 Msa1459630:intergenic 30.0%
ATCTGTCATAAACTTTACTG+TGG - tig0040394:2409-2428 Msa1459630:intron 30.0%
TCTTGTAAGGCTATGATTAT+TGG - tig0040394:2491-2510 Msa1459630:intron 30.0%
TTTCTAGATCAAACACCTAT+CGG - tig0040394:2562-2581 Msa1459630:intron 30.0%
ACGTTATAAGCCACATTTAA+TGG - tig0040394:2839-2858 Msa1459630:intron 30.0%
TTCATACAATTCCTGAGAAA+AGG + tig0040394:2905-2924 Msa1459630:intergenic 30.0%
CAAATGTTACTATTCACAAG+TGG + tig0040394:2952-2971 Msa1459630:intergenic 30.0%
ATTATATCCAGTTCATATGC+TGG - tig0040394:3347-3366 Msa1459630:intron 30.0%
TCATATGCTGGCAAATAAAT+TGG - tig0040394:3359-3378 Msa1459630:intron 30.0%
AGTAAAATCCGTTCAACTAT+TGG - tig0040394:3387-3406 Msa1459630:intron 30.0%
GTAAAATCCGTTCAACTATT+GGG - tig0040394:3388-3407 Msa1459630:intron 30.0%
TTGATATCCCAATAGTTGAA+CGG + tig0040394:3398-3417 Msa1459630:intergenic 30.0%
TTCAACTATTGGGATATCAA+CGG - tig0040394:3398-3417 Msa1459630:intron 30.0%
CACAAATAATTTGAAGAGTG+TGG + tig0040394:3546-3565 Msa1459630:intergenic 30.0%
AAAAACTTGTCAACATGAGA+AGG + tig0040394:3700-3719 Msa1459630:intergenic 30.0%
!!! TCATGTTGACAAGTTTTTTG+AGG - tig0040394:3702-3721 Msa1459630:intron 30.0%
!! ATTGGTTTGAATTTGCAGAA+TGG - tig0040394:3813-3832 Msa1459630:intron 30.0%
TTGAATTTGCAGAATGGATA+TGG - tig0040394:3819-3838 Msa1459630:intron 30.0%
GGTAGAATATTTAAGTAACC+TGG - tig0040394:4027-4046 Msa1459630:intron 30.0%
TTAACTCAACATCACATAAC+CGG + tig0040394:4139-4158 Msa1459630:intergenic 30.0%
AAATCAGAAAGGCTAAATGA+TGG - tig0040394:4218-4237 Msa1459630:CDS 30.0%
TTTATAGGTAATTGGATCTG+TGG - tig0040394:4472-4491 Msa1459630:CDS 30.0%
TTATAGGTAATTGGATCTGT+GGG - tig0040394:4473-4492 Msa1459630:CDS 30.0%
TTGAATTCTGTATGCTTAAG+TGG + tig0040394:4503-4522 Msa1459630:intergenic 30.0%
!! AAAGTTGTAGATTCTGAAAC+TGG - tig0040394:4521-4540 Msa1459630:CDS 30.0%
!! AAAGGGAATTTTGAAAGTCA+GGG - tig0040394:4565-4584 Msa1459630:CDS 30.0%
!!! CGATTTTTTCATATACACAC+TGG + tig0040394:4673-4692 Msa1459630:intergenic 30.0%
CCAGTCTTCAAGTATTTATA+AGG + tig0040394:4775-4794 Msa1459630:intergenic 30.0%
CCTTATAAATACTTGAAGAC+TGG - tig0040394:4772-4791 Msa1459630:intron 30.0%
CTGGAACAAGGAATTATAAA+AGG - tig0040394:4791-4810 Msa1459630:intron 30.0%
TGTAACTTACACACTTTGAT+CGG + tig0040394:4956-4975 Msa1459630:intergenic 30.0%
!! TGACAACAATTTGTTGTATG+AGG + tig0040394:5466-5485 Msa1459630:intergenic 30.0%
TGAGAGTGAAACTAAATACA+AGG - tig0040394:5892-5911 Msa1459630:CDS 30.0%
TGAAACTAAATACAAGGCTA+GGG - tig0040394:5898-5917 Msa1459630:CDS 30.0%
ACTTGTATAGATTCTCTATC+TGG + tig0040394:6208-6227 Msa1459630:intergenic 30.0%
TGTAACATACCATTGACATT+AGG + tig0040394:6238-6257 Msa1459630:intergenic 30.0%
AATAGTTATAGCTCAAACAC+AGG - tig0040394:6258-6277 Msa1459630:intron 30.0%
ATGGTATAACTGTTATCACT+TGG + tig0040394:6344-6363 Msa1459630:intergenic 30.0%
!! GAAGAGATAATGGAATGGAA+TGG + tig0040394:131-150 Msa0820290:intergenic 35.0%
! AGAAGCATAGTTGTAGTTAG+CGG + tig0040394:194-213 Msa1459630:intergenic 35.0%
CAAAGAAAACGGAGATAAGA+AGG - tig0040394:642-661 Msa1459630:intron 35.0%
! AGAAGGTTTTCCCCTTTATT+AGG - tig0040394:659-678 Msa1459630:intron 35.0%
TGCCAGAACTTCCTAATAAA+GGG + tig0040394:673-692 Msa1459630:intergenic 35.0%
TTGCCAGAACTTCCTAATAA+AGG + tig0040394:674-693 Msa1459630:intergenic 35.0%
! TTATTAGGAAGTTCTGGCAA+TGG - tig0040394:674-693 Msa1459630:intron 35.0%
GTATGGTGATAAAGTAGCTT+TGG - tig0040394:757-776 Msa1459630:intron 35.0%
TTGTATGTCATAGTTGAAGG+AGG + tig0040394:800-819 Msa1459630:intergenic 35.0%
!! TTCTTACTAGGTTGATAGCA+TGG - tig0040394:831-850 Msa1459630:intron 35.0%
!! TAGGTTGATAGCATGGAAAA+CGG - tig0040394:838-857 Msa1459630:intron 35.0%
! AGAGTTTGGTTCAAAGTAGA+TGG - tig0040394:901-920 Msa1459630:CDS 35.0%
ACAACCGAATGAGATTTCAA+GGG + tig0040394:1437-1456 Msa1459630:intergenic 35.0%
TACAACCGAATGAGATTTCA+AGG + tig0040394:1438-1457 Msa1459630:intergenic 35.0%
TTCTTAAAGCATGCAAAGTC+GGG - tig0040394:1778-1797 Msa1459630:intron 35.0%
ATACATTTCAGGATTGTCCA+CGG + tig0040394:1968-1987 Msa1459630:intergenic 35.0%
TGATCAAGAGAAAGGCTAAT+AGG + tig0040394:2207-2226 Msa1459630:intergenic 35.0%
!! CCTTTTGATGATCAAGAGAA+AGG + tig0040394:2215-2234 Msa1459630:intergenic 35.0%
CCTTTCTCTTGATCATCAAA+AGG - tig0040394:2212-2231 Msa1459630:intron 35.0%
CATCAAAAGGAACAGTAATC+AGG - tig0040394:2225-2244 Msa1459630:intron 35.0%
CTGATGCAAAAGATTCTGAT+GGG + tig0040394:2377-2396 Msa1459630:intergenic 35.0%
GAGATCATAGAACTCTTGTA+AGG - tig0040394:2478-2497 Msa1459630:intron 35.0%
! GAGTATTTCATTTTCTCACG+TGG - tig0040394:2659-2678 Msa1459630:intron 35.0%
CACTACTGTAAGAAACTTGA+AGG - tig0040394:2697-2716 Msa1459630:intron 35.0%
ATGCCATAAAAGAACACTCA+TGG - tig0040394:2766-2785 Msa1459630:CDS 35.0%
! AAGCCATGAGTGTTCTTTTA+TGG + tig0040394:2772-2791 Msa1459630:intergenic 35.0%
GGAACAGAAACCATTAAATG+TGG + tig0040394:2852-2871 Msa1459630:intergenic 35.0%
AACATTGCATAGAGATAGGA+AGG + tig0040394:3294-3313 Msa1459630:intergenic 35.0%
TTCCTATCTCTATGCAATGT+TGG - tig0040394:3293-3312 Msa1459630:CDS 35.0%
ATCCAACATTGCATAGAGAT+AGG + tig0040394:3298-3317 Msa1459630:intergenic 35.0%
ATCTCTATGCAATGTTGGAT+TGG - tig0040394:3298-3317 Msa1459630:CDS 35.0%
TTATTTGCCAGCATATGAAC+TGG + tig0040394:3357-3376 Msa1459630:intergenic 35.0%
! TCAAACAGGAACCTTCTTTT+CGG - tig0040394:3751-3770 Msa1459630:CDS 35.0%
TTAGAAGATAGCCGAAAAGA+AGG + tig0040394:3765-3784 Msa1459630:intergenic 35.0%
TGGTTTAACAGAAACTTCAC+CGG - tig0040394:3839-3858 Msa1459630:intron 35.0%
TGATAGAGACTTGGGTATTA+TGG - tig0040394:3966-3985 Msa1459630:CDS 35.0%
GATAGAGACTTGGGTATTAT+GGG - tig0040394:3967-3986 Msa1459630:CDS 35.0%
ATAGAGACTTGGGTATTATG+GGG - tig0040394:3968-3987 Msa1459630:CDS 35.0%
TATCCCATACTACACCATTT+GGG + tig0040394:4004-4023 Msa1459630:intergenic 35.0%
TTAAAAGCAAGCTATCGAAG+AGG + tig0040394:4058-4077 Msa1459630:intergenic 35.0%
!!! TCTTCGATAGCTTGCTTTTA+AGG - tig0040394:4057-4076 Msa1459630:intron 35.0%
!!! CTTCGATAGCTTGCTTTTAA+GGG - tig0040394:4058-4077 Msa1459630:intron 35.0%
GGTTCTACTTAATTAGGTGT+TGG - tig0040394:4239-4258 Msa1459630:CDS 35.0%
TATAGGTAATTGGATCTGTG+GGG - tig0040394:4474-4493 Msa1459630:CDS 35.0%
TTCAAAATTCCCTTTGAACC+AGG + tig0040394:4560-4579 Msa1459630:intergenic 35.0%
!! CAAAGGGAATTTTGAAAGTC+AGG - tig0040394:4564-4583 Msa1459630:CDS 35.0%
!! AAGGGAATTTTGAAAGTCAG+GGG - tig0040394:4566-4585 Msa1459630:CDS 35.0%
AATACTTGAAGACTGGAACA+AGG - tig0040394:4779-4798 Msa1459630:intron 35.0%
TTGCTTGTTCATCAAGGAAA+AGG + tig0040394:4850-4869 Msa1459630:intergenic 35.0%
CAAAAGTTGCTTGTTCATCA+AGG + tig0040394:4856-4875 Msa1459630:intergenic 35.0%
TGAATACTGGTGATATAGGT+TGG - tig0040394:5039-5058 Msa1459630:CDS 35.0%
!!! TGTGTATGTTGCTTTTCATG+TGG - tig0040394:5170-5189 Msa1459630:intron 35.0%
TCATGTGTTTCAACATGAGA+AGG - tig0040394:5392-5411 Msa1459630:intron 35.0%
AGAAGGTGAAAATGTTGAAC+CGG - tig0040394:5409-5428 Msa1459630:intron 35.0%
ACAAATTGTTGTCATTGGTC+AGG - tig0040394:5472-5491 Msa1459630:intron 35.0%
CAGGTGAGTTTAAATCTTGA+CGG - tig0040394:5491-5510 Msa1459630:intron 35.0%
CTGACTAACATCTGAACTAT+TGG + tig0040394:5690-5709 Msa1459630:intergenic 35.0%
CAATAGTTCAGATGTTAGTC+AGG - tig0040394:5688-5707 Msa1459630:intron 35.0%
AAGTAAGACAAGATCTTACC+AGG + tig0040394:5750-5769 Msa1459630:intergenic 35.0%
AGATCTTGTCTTACTTCTGT+TGG - tig0040394:5754-5773 Msa1459630:intron 35.0%
!! TGTTGGTGATTGTGTTTACA+AGG - tig0040394:5771-5790 Msa1459630:intron 35.0%
GTGATTGTGTTTACAAGGAA+GGG - tig0040394:5776-5795 Msa1459630:intron 35.0%
TCAGTTAAAGTTTGCGTGAA+TGG - tig0040394:5835-5854 Msa1459630:CDS 35.0%
GTGAAACTAAATACAAGGCT+AGG - tig0040394:5897-5916 Msa1459630:CDS 35.0%
GAAACTAAATACAAGGCTAG+GGG - tig0040394:5899-5918 Msa1459630:CDS 35.0%
ATGCTTAATCTAACCGTGAA+GGG + tig0040394:6042-6061 Msa1459630:intergenic 35.0%
ATAGAGTTATGGCTCAATAC+AGG - tig0040394:6180-6199 Msa1459630:intron 35.0%
TAGAGTTATGGCTCAATACA+GGG - tig0040394:6181-6200 Msa1459630:intron 35.0%
GTAAACCAACCTAATGTCAA+TGG - tig0040394:6226-6245 Msa1459630:intron 35.0%
ACATACCATTGACATTAGGT+TGG + tig0040394:6234-6253 Msa1459630:intergenic 35.0%
GTAAAATTACCTAATGCCAG+TGG - tig0040394:6303-6322 Msa1459630:CDS 35.0%
GGCAGAAGAAGAAGAGATAA+TGG + tig0040394:141-160 Msa0820290:intergenic 40.0%
CTTCTTCTGCCAAATTCCAA+TGG - tig0040394:150-169 Msa1459630:intron 40.0%
! CTTTTGCCATACTCAATCCA+AGG - tig0040394:297-316 Msa1459630:three_prime_UTR 40.0%
TACGTACCTTGGATTGAGTA+TGG + tig0040394:306-325 Msa1459630:intergenic 40.0%
ATAGAAGCAGTTACGTACCT+TGG + tig0040394:317-336 Msa1459630:intergenic 40.0%
GCGTATATGAATAGTACTGC+AGG + tig0040394:505-524 Msa1459630:intergenic 40.0%
! ATACGCGTTACGTGTTTTTC+AGG - tig0040394:519-538 Msa1459630:intron 40.0%
TCCCCTTTATTAGGAAGTTC+TGG - tig0040394:668-687 Msa1459630:intron 40.0%
GCCAGAACTTCCTAATAAAG+GGG + tig0040394:672-691 Msa1459630:intergenic 40.0%
GGAAAGCAGTTCCTGATATT+TGG - tig0040394:717-736 Msa1459630:intron 40.0%
GCAGAAGTTCTCCAAATATC+AGG + tig0040394:731-750 Msa1459630:intergenic 40.0%
AGAACTTCTGCAGAGAAGTA+TGG - tig0040394:740-759 Msa1459630:intron 40.0%
GGTATGGTTAGAGTAGAGTT+TGG - tig0040394:887-906 Msa1459630:CDS 40.0%
!!! TGGTTGAGTTTTATTGGTGG+TGG - tig0040394:1117-1136 Msa1459630:CDS 40.0%
!!! GGTTGAGTTTTATTGGTGGT+GGG - tig0040394:1118-1137 Msa1459630:CDS 40.0%
CAAGGGATAAGTTTCACACA+TGG + tig0040394:1420-1439 Msa1459630:intergenic 40.0%
CTTACCAACATTTCAGTTGG+AGG - tig0040394:1481-1500 Msa1459630:CDS 40.0%
CACATCAACATTGCAACCTT+TGG + tig0040394:1647-1666 Msa1459630:intergenic 40.0%
TTATTACCTACGGTCCTGTT+TGG - tig0040394:1670-1689 Msa1459630:intron 40.0%
TATTACCTACGGTCCTGTTT+GGG - tig0040394:1671-1690 Msa1459630:intron 40.0%
CCTAGACTAAACACATAGCA+TGG + tig0040394:1847-1866 Msa1459630:intergenic 40.0%
CCATGCTATGTGTTTAGTCT+AGG - tig0040394:1844-1863 Msa1459630:intron 40.0%
TGTGTTTAGTCTAGGCATGA+TGG - tig0040394:1852-1871 Msa1459630:intron 40.0%
TTGGAGCAATCAATGTGGTT+AGG - tig0040394:1878-1897 Msa1459630:intron 40.0%
TGGAGCAATCAATGTGGTTA+GGG - tig0040394:1879-1898 Msa1459630:intron 40.0%
! CCTTGTTTGCTTCATTGACA+AGG + tig0040394:2065-2084 Msa1459630:intergenic 40.0%
CCTTGTCAATGAAGCAAACA+AGG - tig0040394:2062-2081 Msa1459630:CDS 40.0%
TGTCAATGAAGCAAACAAGG+AGG - tig0040394:2065-2084 Msa1459630:CDS 40.0%
GGTGCCAATCTATACATTCA+TGG - tig0040394:2086-2105 Msa1459630:CDS 40.0%
AGGTGGCATACTAGTATCAT+GGG + tig0040394:2157-2176 Msa1459630:intergenic 40.0%
! TATTATAGAGAAGGTGCAGG+TGG + tig0040394:2174-2193 Msa1459630:intergenic 40.0%
CTCATCTACATTGTGATTGC+AGG - tig0040394:2259-2278 Msa1459630:intron 40.0%
GGTACTACTGGAAATCCTAA+AGG - tig0040394:2340-2359 Msa1459630:intron 40.0%
!! TGGGTTAGCATAACACCTTT+AGG + tig0040394:2358-2377 Msa1459630:intergenic 40.0%
CCTGATGCAAAAGATTCTGA+TGG + tig0040394:2378-2397 Msa1459630:intergenic 40.0%
! CCATCAGAATCTTTTGCATC+AGG - tig0040394:2375-2394 Msa1459630:intron 40.0%
AATCTATCTCCAGCTTCAGT+AGG + tig0040394:2596-2615 Msa1459630:intergenic 40.0%
TTCTAAGTATGTTGCCTCCT+TGG - tig0040394:2615-2634 Msa1459630:intron 40.0%
! TACAGGTAACTCCTTTTCTC+AGG - tig0040394:2891-2910 Msa1459630:CDS 40.0%
!!! TGTTTTTGGTTCCTCTGTAG+TGG - tig0040394:2976-2995 Msa1459630:intron 40.0%
!!! GTTTTTGGTTCCTCTGTAGT+GGG - tig0040394:2977-2996 Msa1459630:intron 40.0%
TTGTCGCTCTCACATTCATA+AGG - tig0040394:3040-3059 Msa1459630:intron 40.0%
TGTCGCTCTCACATTCATAA+GGG - tig0040394:3041-3060 Msa1459630:intron 40.0%
ACATTCATAAGGGTCAGCTT+AGG - tig0040394:3051-3070 Msa1459630:intron 40.0%
GGAGTGTAAGCGAATTTATG+AGG - tig0040394:3080-3099 Msa1459630:intron 40.0%
GTAAGCGAATTTATGAGGTC+TGG - tig0040394:3085-3104 Msa1459630:intron 40.0%
GGAAGGTGATTTCTGATTCT+TGG + tig0040394:3277-3296 Msa1459630:intergenic 40.0%
!! ATGCAATGTTGGATTGGCTA+TGG - tig0040394:3304-3323 Msa1459630:CDS 40.0%
!! TGCAATGTTGGATTGGCTAT+GGG - tig0040394:3305-3324 Msa1459630:CDS 40.0%
TTGGCTATGGGCAAGAATTA+TGG - tig0040394:3317-3336 Msa1459630:CDS 40.0%
!! AATGCATCACTTTTCTGCTC+AGG - tig0040394:3620-3639 Msa1459630:intron 40.0%
ACCTTCATGTGATAGAGACT+TGG - tig0040394:3957-3976 Msa1459630:CDS 40.0%
CCTTCATGTGATAGAGACTT+GGG - tig0040394:3958-3977 Msa1459630:CDS 40.0%
AAGTCCCAAATGGTGTAGTA+TGG - tig0040394:3997-4016 Msa1459630:CDS 40.0%
AGTCCCAAATGGTGTAGTAT+GGG - tig0040394:3998-4017 Msa1459630:CDS 40.0%
GTATCCCATACTACACCATT+TGG + tig0040394:4005-4024 Msa1459630:intergenic 40.0%
ATGGTGTAGTATGGGATACT+CGG - tig0040394:4006-4025 Msa1459630:CDS 40.0%
!!! GATAGCTTGCTTTTAAGGGA+GGG - tig0040394:4062-4081 Msa1459630:intron 40.0%
ACAAACCTCTAGACAGAGAT+CGG + tig0040394:4354-4373 Msa1459630:intergenic 40.0%
AAAATTCCCTTTGAACCAGG+TGG + tig0040394:4557-4576 Msa1459630:intergenic 40.0%
AGTACCCCTTCATCAATTGT+GGG + tig0040394:4592-4611 Msa1459630:intergenic 40.0%
TAGTACCCCTTCATCAATTG+TGG + tig0040394:4593-4612 Msa1459630:intergenic 40.0%
!! ATTGATGAAGGGGTACTACA+AGG - tig0040394:4595-4614 Msa1459630:CDS 40.0%
! TGAACAAGCAACTTTTGCGA+TGG - tig0040394:4859-4878 Msa1459630:intron 40.0%
AGAATCCTTCAGCTACAGAT+CGG - tig0040394:4994-5013 Msa1459630:CDS 40.0%
TACAGATCGGGTCATTGATA+GGG - tig0040394:5007-5026 Msa1459630:CDS 40.0%
TGGCTGAATACTGGTGATAT+AGG - tig0040394:5035-5054 Msa1459630:CDS 40.0%
! TCTACCTGATGAAAGCACAA+TGG + tig0040394:5141-5160 Msa1459630:intergenic 40.0%
GCAATTAAGGGTCCGAAAAA+TGG + tig0040394:5303-5322 Msa1459630:intergenic 40.0%
CATAGAAAGCCTGTTGTCAT+TGG - tig0040394:5344-5363 Msa1459630:intron 40.0%
GAGAAAGAACCAATGACAAC+AGG + tig0040394:5356-5375 Msa1459630:intergenic 40.0%
GAAGGTGAAAATGTTGAACC+GGG - tig0040394:5410-5429 Msa1459630:intron 40.0%
TTGTATGAGGTTACTCCTCA+TGG + tig0040394:5453-5472 Msa1459630:intergenic 40.0%
ATATAGGATAAACGGCGTCT+AGG - tig0040394:5599-5618 Msa1459630:intron 40.0%
GGTGATTGTGTTTACAAGGA+AGG - tig0040394:5775-5794 Msa1459630:intron 40.0%
TCAGGGTTTCCATTTCAGAT+TGG - tig0040394:5994-6013 Msa1459630:intron 40.0%
CAGGGTTTCCATTTCAGATT+GGG - tig0040394:5995-6014 Msa1459630:intron 40.0%
GGATCATTTACGAGAAGGAT+TGG + tig0040394:6021-6040 Msa1459630:intergenic 40.0%
TGAAGGGATCATTTACGAGA+AGG + tig0040394:6026-6045 Msa1459630:intergenic 40.0%
TCTCGTAAATGATCCCTTCA+CGG - tig0040394:6026-6045 Msa1459630:intron 40.0%
GATGCTTAATCTAACCGTGA+AGG + tig0040394:6043-6062 Msa1459630:intergenic 40.0%
ACCCACAATGAAAGTTCGAA+GGG - tig0040394:6157-6176 Msa1459630:intron 40.0%
TCCCTTCGAACTTTCATTGT+GGG + tig0040394:6161-6180 Msa1459630:intergenic 40.0%
ATCCCTTCGAACTTTCATTG+TGG + tig0040394:6162-6181 Msa1459630:intergenic 40.0%
AGTTCGAAGGGATAGAGTTA+TGG - tig0040394:6169-6188 Msa1459630:intron 40.0%
AGCTCAAACACAGGATCAAA+TGG - tig0040394:6267-6286 Msa1459630:intron 40.0%
CTTCTGCCAAATTCCAATGG+CGG - tig0040394:153-172 Msa1459630:intron 45.0%
TTCTGCCAAATTCCAATGGC+GGG - tig0040394:154-173 Msa1459630:intron 45.0%
GAATTCCCGCCATTGGAATT+TGG + tig0040394:162-181 Msa1459630:intergenic 45.0%
TTGTAGTTAGCGGAGGTGAT+AGG + tig0040394:184-203 Msa1459630:intergenic 45.0%
AGCATAGTTGTAGTTAGCGG+AGG + tig0040394:191-210 Msa1459630:intergenic 45.0%
GAAGAGAGGAAGTGAATGGA+TGG + tig0040394:218-237 Msa1459630:intergenic 45.0%
CGAAGAAGAGAGGAAGTGAA+TGG + tig0040394:222-241 Msa1459630:intergenic 45.0%
GCAAAAGACGCGAAAAGAAG+CGG + tig0040394:284-303 Msa1459630:intergenic 45.0%
TCTACGAGATGTTAGCTCAG+TGG + tig0040394:459-478 Msa1459630:intergenic 45.0%
! TTAGGAAGTTCTGGCAATGG+TGG - tig0040394:677-696 Msa1459630:intron 45.0%
GCATCCTCCAACTGAAATGT+TGG + tig0040394:1488-1507 Msa1459630:intergenic 45.0%
ATTACCTACGGTCCTGTTTG+GGG - tig0040394:1672-1691 Msa1459630:intron 45.0%
AAATTGCAACCACCCCAAAC+AGG + tig0040394:1687-1706 Msa1459630:intergenic 45.0%
AAAGTCGGGATCATCTACAC+TGG - tig0040394:1792-1811 Msa1459630:intron 45.0%
AGTCTAGGCATGATGGCAAT+TGG - tig0040394:1859-1878 Msa1459630:intron 45.0%
GGCAATTGGAGCAATCAATG+TGG - tig0040394:1873-1892 Msa1459630:intron 45.0%
GGAGCAATCAATGTGGTTAG+GGG - tig0040394:1880-1899 Msa1459630:intron 45.0%
TCAATGTGGTTAGGGGTTCA+AGG - tig0040394:1887-1906 Msa1459630:intron 45.0%
CTAGTGCAACACTTTCAGAG+TGG + tig0040394:1945-1964 Msa1459630:intergenic 45.0%
TGGCATACTAGTATCATGGG+AGG + tig0040394:2154-2173 Msa1459630:intergenic 45.0%
CAGGTGGCATACTAGTATCA+TGG + tig0040394:2158-2177 Msa1459630:intergenic 45.0%
GCTACTCTTGTGTACACAAG+TGG - tig0040394:2319-2338 Msa1459630:intron 45.0%
GTGTACACAAGTGGTACTAC+TGG - tig0040394:2328-2347 Msa1459630:intron 45.0%
CTTTCATATGCATGCCAAGG+AGG + tig0040394:2632-2651 Msa1459630:intergenic 45.0%
GCTCTTTCATATGCATGCCA+AGG + tig0040394:2635-2654 Msa1459630:intergenic 45.0%
GCATACAGTACCATGCATGA+AGG + tig0040394:2750-2769 Msa1459630:intergenic 45.0%
AAGGGTCAGCTTAGGATACA+TGG - tig0040394:3059-3078 Msa1459630:intron 45.0%
! GATTGACTGACTCTGTTGAG+AGG - tig0040394:3497-3516 Msa1459630:intron 45.0%
TGTTGAGAGGCAAAACGTCT+TGG - tig0040394:3510-3529 Msa1459630:CDS 45.0%
GTTGAGAGGCAAAACGTCTT+GGG - tig0040394:3511-3530 Msa1459630:CDS 45.0%
! CAAAACCTTTTGCACTCTGC+AGG - tig0040394:3648-3667 Msa1459630:intron 45.0%
CCCAAGTCTCTATCACATGA+AGG + tig0040394:3961-3980 Msa1459630:intergenic 45.0%
GCTATCGAAGAGGAATAACC+AGG + tig0040394:4048-4067 Msa1459630:intergenic 45.0%
!!! CGATAGCTTGCTTTTAAGGG+AGG - tig0040394:4061-4080 Msa1459630:intron 45.0%
! AGATCGGGAAGAAAGGTGTA+CGG + tig0040394:4338-4357 Msa1459630:intergenic 45.0%
TAGACAGAGATCGGGAAGAA+AGG + tig0040394:4345-4364 Msa1459630:intergenic 45.0%
CAAACCTCTAGACAGAGATC+GGG + tig0040394:4353-4372 Msa1459630:intergenic 45.0%
AGTTCTTCCACCTGGTTCAA+AGG - tig0040394:4547-4566 Msa1459630:CDS 45.0%
GTTCTTCCACCTGGTTCAAA+GGG - tig0040394:4548-4567 Msa1459630:CDS 45.0%
GCTCACATCACATTCATCCA+CGG - tig0040394:4913-4932 Msa1459630:intron 45.0%
CTCACATCACATTCATCCAC+GGG - tig0040394:4914-4933 Msa1459630:intron 45.0%
TCACATCACATTCATCCACG+GGG - tig0040394:4915-4934 Msa1459630:intron 45.0%
CATGAGTAAATAAGACCCCG+TGG + tig0040394:4933-4952 Msa1459630:intergenic 45.0%
GAATCCTTCAGCTACAGATC+GGG - tig0040394:4995-5014 Msa1459630:CDS 45.0%
CTACAGATCGGGTCATTGAT+AGG - tig0040394:5006-5025 Msa1459630:CDS 45.0%
! GGTGATATAGGTTGGATTGC+TGG - tig0040394:5047-5066 Msa1459630:CDS 45.0%
ATTGCTGGCCACCATTCAAT+TGG - tig0040394:5062-5081 Msa1459630:CDS 45.0%
TTGCTGGCCACCATTCAATT+GGG - tig0040394:5063-5082 Msa1459630:CDS 45.0%
! GGTGGTGTGATTGTTGTTGA+AGG - tig0040394:5101-5120 Msa1459630:intron 45.0%
GACACCATTGTGCTTTCATC+AGG - tig0040394:5134-5153 Msa1459630:intron 45.0%
!! AAGGCTAGGGGTGTTATGAA+TGG - tig0040394:5911-5930 Msa1459630:CDS 45.0%
!! AGGCTAGGGGTGTTATGAAT+GGG - tig0040394:5912-5931 Msa1459630:CDS 45.0%
! GGGGTGTTATGAATGGGAAA+CGG - tig0040394:5918-5937 Msa1459630:CDS 45.0%
ATCACTTCCCATTATCGTGC+AGG - tig0040394:5968-5987 Msa1459630:intron 45.0%
CTGATGTCCTGCACGATAAT+GGG + tig0040394:5978-5997 Msa1459630:intergenic 45.0%
CATTATCGTGCAGGACATCA+GGG - tig0040394:5977-5996 Msa1459630:intron 45.0%
!! AGGATTGGCCCAATCTGAAA+TGG + tig0040394:6006-6025 Msa1459630:intergenic 45.0%
CACCCACAATGAAAGTTCGA+AGG - tig0040394:6156-6175 Msa1459630:intron 45.0%
! TCTATTGTGCCACTGGCATT+AGG + tig0040394:6315-6334 Msa1459630:intergenic 45.0%
GTGATAGGAATTCCCGCCAT+TGG + tig0040394:169-188 Msa1459630:intergenic 50.0%
!! GTTGATGGTGGTGGTGAAGT+TGG + tig0040394:251-270 Msa1459630:intergenic 50.0%
!! TGGAGAAACGTTGATGGTGG+TGG + tig0040394:260-279 Msa1459630:intergenic 50.0%
! GGTTGGAGAAACGTTGATGG+TGG + tig0040394:263-282 Msa1459630:intergenic 50.0%
AGCGGTTGGAGAAACGTTGA+TGG + tig0040394:266-285 Msa1459630:intergenic 50.0%
AAGACGCGAAAAGAAGCGGT+TGG + tig0040394:280-299 Msa1459630:intergenic 50.0%
! AAGTTCTGGCAATGGTGGTG+TGG - tig0040394:682-701 Msa1459630:intron 50.0%
!! GTGGTGTGGCTTTAGATGAG+TGG - tig0040394:696-715 Msa1459630:intron 50.0%
GCTGAGGGGTTGAGAGTTAT+TGG - tig0040394:1521-1540 Msa1459630:CDS 50.0%
AAGCCAGCGACACGAGTTAT+CGG + tig0040394:1579-1598 Msa1459630:intergenic 50.0%
GGCTTGTAGCAGATCAAGGT+TGG - tig0040394:1594-1613 Msa1459630:intron 50.0%
!! TGAAAGTGTTGCACTAGCCG+TGG - tig0040394:1948-1967 Msa1459630:intron 50.0%
! ATTTTGGGCGACAAAGTCGC+AGG - tig0040394:2118-2137 Msa1459630:intron 50.0%
! TTTTGGGCGACAAAGTCGCA+GGG - tig0040394:2119-2138 Msa1459630:intron 50.0%
CAGTAGGTACAACGTCCGAT+AGG + tig0040394:2580-2599 Msa1459630:intergenic 50.0%
GACGTTGTACCTACTGAAGC+TGG - tig0040394:2584-2603 Msa1459630:intron 50.0%
GCTTCATGATCCCACTACAG+AGG + tig0040394:2990-3009 Msa1459630:intergenic 50.0%
ACTCTGCAGGCTGCAATAAG+TGG - tig0040394:3661-3680 Msa1459630:intron 50.0%
! CTTCACCGGTTATTGCTGCT+CGG - tig0040394:3853-3872 Msa1459630:intron 50.0%
!! TTTTAAGGGAGGGTTCCTCG+AGG - tig0040394:4072-4091 Msa1459630:intron 50.0%
TCTTCCCGATCTCTGTCTAG+AGG - tig0040394:4346-4365 Msa1459630:intron 50.0%
ACTGGTGAAGTTCTTCCACC+TGG - tig0040394:4539-4558 Msa1459630:CDS 50.0%
AGGGGCCCACAATTGATGAA+GGG - tig0040394:4584-4603 Msa1459630:CDS 50.0%
ATGACCCGATCTGTAGCTGA+AGG + tig0040394:5002-5021 Msa1459630:intergenic 50.0%
GATCGGGTCATTGATAGGGA+TGG - tig0040394:5011-5030 Msa1459630:CDS 50.0%
TACGACTCCGCCCAATTGAA+TGG + tig0040394:5076-5095 Msa1459630:intergenic 50.0%
ATTGGGCGGAGTCGTAATTC+TGG - tig0040394:5080-5099 Msa1459630:CDS 50.0%
AGCTTGAAGAAGCTGCCATG+AGG - tig0040394:5435-5454 Msa1459630:intron 50.0%
CCTGATGTCCTGCACGATAA+TGG + tig0040394:5979-5998 Msa1459630:intergenic 50.0%
CCATTATCGTGCAGGACATC+AGG - tig0040394:5976-5995 Msa1459630:intron 50.0%
GTACGAGTCTATTGTGCCAC+TGG + tig0040394:6322-6341 Msa1459630:intergenic 50.0%
TTGGTGCGAGCGAAGAAGAG+AGG + tig0040394:232-251 Msa1459630:intergenic 55.0%
TTGCCGATAACTCGTGTCGC+TGG - tig0040394:1573-1592 Msa1459630:CDS 55.0%
!! CGCTGGCTTGTAGCAGATCA+AGG - tig0040394:1590-1609 Msa1459630:CDS 55.0%
TGCAGCCTGCAGAGTGCAAA+AGG + tig0040394:3656-3675 Msa1459630:intergenic 55.0%
CTGCAGGCTGCAATAAGTGG+TGG - tig0040394:3664-3683 Msa1459630:intron 55.0%
CAGGCTGCAATAAGTGGTGG+TGG - tig0040394:3667-3686 Msa1459630:intron 55.0%
AGTCGCCGAGCAGCAATAAC+CGG + tig0040394:3861-3880 Msa1459630:intergenic 55.0%
GTTATTGCTGCTCGGCGACT+TGG - tig0040394:3861-3880 Msa1459630:intron 55.0%
! GGGGTGCTCAAAGTCCCAAA+TGG - tig0040394:3987-4006 Msa1459630:CDS 55.0%
CAGGGGCCCACAATTGATGA+AGG - tig0040394:4583-4602 Msa1459630:CDS 55.0%
GGGGCCCACAATTGATGAAG+GGG - tig0040394:4585-4604 Msa1459630:CDS 55.0%
GGGTCATTGATAGGGATGGC+TGG - tig0040394:5015-5034 Msa1459630:CDS 55.0%
! AGGGATGGCTGGCTGAATAC+TGG - tig0040394:5026-5045 Msa1459630:CDS 55.0%
CTGGCCACCATTCAATTGGG+CGG - tig0040394:5066-5085 Msa1459630:CDS 55.0%
GACTCCGCCCAATTGAATGG+TGG + tig0040394:5073-5092 Msa1459630:intergenic 55.0%
GCAGCTTCTTCAAGCTCTCC+CGG + tig0040394:5431-5450 Msa1459630:intergenic 55.0%
ACCTACGGTCCTGTTTGGGG+TGG - tig0040394:1675-1694 Msa1459630:intron 60.0%
ACCACCCCAAACAGGACCGT+AGG + tig0040394:1679-1698 Msa1459630:intergenic 60.0%
GGGCGGAGTCGTAATTCTGG+TGG - tig0040394:5083-5102 Msa1459630:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0040394 gene 98 6507 98 ID=Msa1459630;Name=Msa1459630
tig0040394 mRNA 98 6507 98 ID=Msa1459630-mRNA-1;Parent=Msa1459630;Name=Msa1459630-mRNA-1;_AED=0.27;_eAED=0.27;_QI=71|1|1|1|0.94|0.88|18|200|718
tig0040394 exon 98 148 98 ID=Msa1459630-mRNA-1:exon:22333;Parent=Msa1459630-mRNA-1
tig0040394 exon 227 468 227 ID=Msa1459630-mRNA-1:exon:22332;Parent=Msa1459630-mRNA-1
tig0040394 exon 558 615 558 ID=Msa1459630-mRNA-1:exon:22331;Parent=Msa1459630-mRNA-1
tig0040394 exon 855 1000 855 ID=Msa1459630-mRNA-1:exon:22330;Parent=Msa1459630-mRNA-1
tig0040394 exon 1112 1191 1112 ID=Msa1459630-mRNA-1:exon:22329;Parent=Msa1459630-mRNA-1
tig0040394 exon 1450 1609 1450 ID=Msa1459630-mRNA-1:exon:22328;Parent=Msa1459630-mRNA-1
tig0040394 exon 1989 2126 1989 ID=Msa1459630-mRNA-1:exon:22327;Parent=Msa1459630-mRNA-1
tig0040394 exon 2715 2795 2715 ID=Msa1459630-mRNA-1:exon:22326;Parent=Msa1459630-mRNA-1
tig0040394 exon 2882 2935 2882 ID=Msa1459630-mRNA-1:exon:22325;Parent=Msa1459630-mRNA-1
tig0040394 exon 3186 3344 3186 ID=Msa1459630-mRNA-1:exon:22324;Parent=Msa1459630-mRNA-1
tig0040394 exon 3504 3609 3504 ID=Msa1459630-mRNA-1:exon:22323;Parent=Msa1459630-mRNA-1
tig0040394 exon 3710 3777 3710 ID=Msa1459630-mRNA-1:exon:22322;Parent=Msa1459630-mRNA-1
tig0040394 exon 3887 4036 3887 ID=Msa1459630-mRNA-1:exon:22321;Parent=Msa1459630-mRNA-1
tig0040394 exon 4209 4324 4209 ID=Msa1459630-mRNA-1:exon:22320;Parent=Msa1459630-mRNA-1
tig0040394 exon 4440 4739 4440 ID=Msa1459630-mRNA-1:exon:22319;Parent=Msa1459630-mRNA-1
tig0040394 exon 4994 5108 4994 ID=Msa1459630-mRNA-1:exon:22318;Parent=Msa1459630-mRNA-1
tig0040394 exon 5782 5964 5782 ID=Msa1459630-mRNA-1:exon:22317;Parent=Msa1459630-mRNA-1
tig0040394 exon 6287 6507 6287 ID=Msa1459630-mRNA-1:exon:22316;Parent=Msa1459630-mRNA-1
tig0040394 five_prime_UTR 6437 6507 6437 ID=Msa1459630-mRNA-1:five_prime_utr;Parent=Msa1459630-mRNA-1
tig0040394 CDS 6287 6436 6287 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 5782 5964 5782 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 4994 5108 4994 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 4440 4739 4440 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 4209 4324 4209 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 3887 4036 3887 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 3710 3777 3710 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 3504 3609 3504 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 3186 3344 3186 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 2882 2935 2882 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 2715 2795 2715 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 1989 2126 1989 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 1450 1609 1450 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 1112 1191 1112 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 855 1000 855 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 558 615 558 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 CDS 376 468 376 ID=Msa1459630-mRNA-1:cds;Parent=Msa1459630-mRNA-1
tig0040394 three_prime_UTR 227 375 227 ID=Msa1459630-mRNA-1:three_prime_utr;Parent=Msa1459630-mRNA-1
tig0040394 three_prime_UTR 98 148 98 ID=Msa1459630-mRNA-1:three_prime_utr;Parent=Msa1459630-mRNA-1
Gene Sequence

>Msa1459630

ATGGCGGGAATTCCTATCACCTCCGCTAACTACAACTATGCTTCTTCCATCCATTCACTTCCTCTCTTCTTCGCTCGCACCAACTTCACCACCACCATCAACGTTTCTCCAACCGCTTCTTTTCGCGTCTTTTGCCATACTCAATCCAAGACAAAGAAAACGGAGATAAGAAGGTTTTCCCCTTTATTAGGAAGTTCTGGCAATGGTGGTGTGGCTTTAGATGAGTGGAAAGCAGTTCCTGATATTTGGAGAACTTCTGCAGAGAAGTATGGTGATAAAGTAGCTTTGGTAGATCAATATCATGATCCTCCTTCAACTATGACATACAAACAGTTGGAGGATGCAATTTTAAACTTTGCTGAGGGGTTGAGAGTTATTGGAGTAAAACCTGATGAGAAAATTGCTCTTTTTGCCGATAACTCGTGTCGCTGGCTTGTAGCAGATCAAGGCATGATGGCAATTGGAGCAATCAATGTGGTTAGGGGTTCAAGGTCATCAATTGAAGAACTGCTGCAAATATACAACCACTCTGAAAGTGTTGCACTAGCCGTGGACAATCCTGAAATGTATAATCAGATTGCAAAACCATTTTATTTGAAGACCTCAATCAGATTTATTATTCTGCTTTGGGGAGAAAAATCAAGCCTTGTCAATGAAGCAAACAAGGAGGTGCCAATCTATACATTCATGGAAGTCATAAATTTTGGGCGACAAAGTCGCAGGGCATTGCACGCCTCCCATGATACTAGACAACACATGTTTGAAACAATAAAATTGGATGACATTGCTACTCTTGTGTACACAAGTGGTACTACTGGAAATCCTAAAGGTGTTATGCTAACCCATCAGAATCTTTTGCATCAGATCAAACACCTATCGGACGTTGTACCTACTGAAGCTGGAGATAGATTTCTAAGTATGTTGCCTCCTTGGCATGCATATGAAAGAGCTTGCGAGTATTTCATTTTCTCACGTGGTCTTGAACATATATACACTACTGTAAGAAACTTGAAGGATGATTTGGGACGTTATAAGCCACATTTAATGGTTTCTGTTCCTTTAGTTTTTGAAACTTTGTACAGTGGGATCATGAAGCAGATATCTACAAGCTCACTTGTTAGAAAGCTTGTCGCTCTCACATTCATAAGGGTCAGCTTAGGATACATGGAGTGTAAGCGAATTTATGAGGGTAAATGTTTAACCAAGAATCAGAAATCACCTTCCTATCTCTATGCAATGTTGGATTGGCTATGGGCAAGAATTATGGCTGCAATATTATATCCAGTTCATATGCTGGCAAATAAATTGGTTTACAGTAAAATCCGTTCAACTATTGGGATATCAACGGCTGCAATAAGTGGTGGTGGTAGCTTACCTTCTCATGTTGACAAGTTTTTTGAGGCTATTGGTTTGAATTTGCAGAATGGATATGGTTTAACAGAAACTTCACCGGTTATTGCTGCTCGGCGACTTGGTTGTGACGTAATTGGATCTGTGGGGTATCCACTTAAGCATACAGAATTCAAAGTTGTAGATTCTGAAACTGGTGAAGTTCTTCCACCTGGTTCAAAGGGAATTTTGAAAGTCAGGGGCCCACAATTGATGAAGGGGTACTACAAGAATCCTTCAGCTACAGATCGGGTCATTGATAGGGATGGCTGGCTGAATACTGGTGATATAGGTTGGATTGCTGGCCACCATTCAATTGGGCGGAGTCGTAATTCTGGTGGTGTGATTGTTGTTGAAGGTCGTGCTAAAGACACCATTGTGCTTTCATCAGGTGAAAATGTTGAACCGGGAGAGCTTGAAGAAGCTGCCATGAGGAGTAACCTCATACAACAAATTGTTGTCATTGGTCAGGATAAACGGCGTCTAGGAGCTGTAACTGTTCCTAACAAAGAAGAAGTCTTAAAGGCAGCAAAGAAATTGTCAATTATAGATTCCAATAGTTCAGATGTTAGTCAGGAAAAAGTGACCAGTCTAATATATAATGAACTAAAGACCTGGACATCAGGGTTTCCATTTCAGATTGGGCCAATCCTTCTCGTAAATGATCCCTTCACGATTGATAATGGGCTAATGACACCCACAATGAAAGTTCGAAGGGATAGAGTTATGGCTCAATACAGGGACCAGATAGAGAATCTATACAAGTAA

Protein sequence

>Msa1459630

MAGIPITSANYNYASSIHSLPLFFARTNFTTTINVSPTASFRVFCHTQSKTKKTEIRRFSPLLGSSGNGGVALDEWKAVPDIWRTSAEKYGDKVALVDQYHDPPSTMTYKQLEDAILNFAEGLRVIGVKPDEKIALFADNSCRWLVADQGMMAIGAINVVRGSRSSIEELLQIYNHSESVALAVDNPEMYNQIAKPFYLKTSIRFIILLWGEKSSLVNEANKEVPIYTFMEVINFGRQSRRALHASHDTRQHMFETIKLDDIATLVYTSGTTGNPKGVMLTHQNLLHQIKHLSDVVPTEAGDRFLSMLPPWHAYERACEYFIFSRGLEHIYTTVRNLKDDLGRYKPHLMVSVPLVFETLYSGIMKQISTSSLVRKLVALTFIRVSLGYMECKRIYEGKCLTKNQKSPSYLYAMLDWLWARIMAAILYPVHMLANKLVYSKIRSTIGISTAAISGGGSLPSHVDKFFEAIGLNLQNGYGLTETSPVIAARRLGCDVIGSVGYPLKHTEFKVVDSETGEVLPPGSKGILKVRGPQLMKGYYKNPSATDRVIDRDGWLNTGDIGWIAGHHSIGRSRNSGGVIVVEGRAKDTIVLSSGENVEPGELEEAAMRSNLIQQIVVIGQDKRRLGAVTVPNKEEVLKAAKKLSIIDSNSSDVSQEKVTSLIYNELKTWTSGFPFQIGPILLVNDPFTIDNGLMTPTMKVRRDRVMAQYRDQIENLYK*