AlfalfaGEDB | Msa1368660

M. sativa cultivar zhongmu-4 / Msa1368660

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598
PFAM: PF00355.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368660	XP_003603276.1	95.833	552	23	0	1	552	1	552	0.0	1083

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368660	sp\|O49931\|TIC55_PEA	88.768	552	59	2	1	552	5	553	0.0	1031

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368660	G7J9S7	95.833	552	23	0	1	552	1	552	0.0	1083

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1368660	0.805394	1.363469e-49	-8.615850e-47
Msa0000220	Msa1368660	0.810859	9.346043e-51	-8.615850e-47
Msa0000610	Msa1368660	0.804192	2.430404e-49	-8.615850e-47
Msa0003340	Msa1368660	0.824784	6.689319e-54	-8.615850e-47
Msa0003450	Msa1368660	0.811950	5.418587e-51	-8.615850e-47
Msa0004340	Msa1368660	0.829808	4.183558e-55	-8.615850e-47
Msa0005160	Msa1368660	0.814519	1.478223e-51	-8.615850e-47
Msa0005190	Msa1368660	0.805807	1.116975e-49	-8.615850e-47
Msa0005630	Msa1368660	0.843460	1.382722e-58	-8.615850e-47
Msa0005690	Msa1368660	0.866331	3.082006e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368660	MtrunA17_Chr3g0136771	95.833	552	23	0	1	552	1	552	0.0	1083
Msa1368660	MtrunA17_Chr4g0027961	29.360	453	258	16	96	519	90	509	1.25e-54	193
Msa1368660	MtrunA17_Chr8g0378671	27.345	501	283	14	84	551	67	519	9.36e-48	174
Msa1368660	MtrunA17_Chr8g0378721	26.400	500	290	13	84	551	67	520	9.28e-46	168
Msa1368660	MtrunA17_Chr8g0378701	30.094	319	195	7	84	380	81	393	1.16e-39	149
Msa1368660	MtrunA17_Chr1g0159921	26.176	340	205	14	99	421	210	520	1.61e-20	95.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368660	AT2G24820.1	77.597	491	104	4	64	552	53	539	0.0	794
Msa1368660	AT3G44880.1	28.423	577	306	23	6	546	22	527	3.13e-50	181
Msa1368660	AT4G25650.1	27.556	450	254	15	96	510	79	491	2.34e-43	162
Msa1368660	AT4G25650.2	26.205	477	249	16	96	510	79	514	8.68e-40	152
Msa1368660	AT1G44446.4	25.959	339	207	14	99	421	116	426	4.65e-23	102
Msa1368660	AT1G44446.1	25.959	339	207	14	99	421	218	528	1.58e-22	101
Msa1368660	AT1G44446.2	27.076	277	164	12	99	361	218	470	3.00e-20	94.7
Msa1368660	AT1G44446.3	29.944	177	109	6	99	270	218	384	4.95e-17	84.0

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Find 157 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGCTTGCATTCTGA+TGG	0.468051	tig0018650:-150757	None:intergenic
AAATATCTATTTGCTAAATT+TGG	0.091375	tig0018650:-151061	None:intergenic
AAATGGATTTACCAACGCCA+TGG	0.614476	tig0018650:-148809	None:intergenic
AACAATGTCTTCCGATGAAA+AGG	0.450694	tig0018650:+151451	Msa1368660:three_prime_UTR
AAGGCCAGTTGATTGATGGA+AGG	0.603495	tig0018650:+150016	Msa1368660:CDS
ACAATGGAAAGTCCTCCTGT+TGG	0.632385	tig0018650:+151204	Msa1368660:CDS
ACACATGGGTTGCTGAATAC+AGG	0.486315	tig0018650:+150876	Msa1368660:CDS
ACATTCTTAGTGAGGTACAA+AGG	0.557836	tig0018650:-149120	None:intergenic
ACCCCTGCGTTCTTGCTCAC+TGG	0.427222	tig0018650:-149055	None:intergenic
ACGCAACAGCCACAGCCGAA+AGG	0.521750	tig0018650:-151150	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAGTTTCAATCTCAACAA+AGG	+	tig0018650:148919-148938	Msa1368660:CDS	30.0%
TGCCATCTTTAAACAAAACA+AGG	-	tig0018650:149188-149207	None:intergenic	30.0%
AGATTCAATGCTATGAAGAT+CGG	+	tig0018650:149214-149233	Msa1368660:CDS	30.0%
TAAATTAAAACCAACCTGTG+AGG	-	tig0018650:149243-149262	None:intergenic	30.0%
ATGATGTGAAATCAAACTCA+AGG	+	tig0018650:149494-149513	Msa1368660:intron	30.0%
TCATTATCAGACAAACACAT+TGG	-	tig0018650:149533-149552	None:intergenic	30.0%
CAGTAGCAGTATTGTAAATA+AGG	-	tig0018650:149641-149660	None:intergenic	30.0%
TACTTGCCAATCAATTTAGA+TGG	-	tig0018650:149909-149928	None:intergenic	30.0%
TGTTAGCATCAAACCATATA+AGG	-	tig0018650:150150-150169	None:intergenic	30.0%
GTGTTAAAACATATGAAGTG+AGG	+	tig0018650:150237-150256	Msa1368660:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018650	gene	148653	151548	148653	ID=Msa1368660;Name=Msa1368660
tig0018650	mRNA	148653	151548	148653	ID=Msa1368660-mRNA-1;Parent=Msa1368660;Name=Msa1368660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=158\|1\|1\|1\|1\|1\|3\|227\|552
tig0018650	exon	148653	149247	148653	ID=Msa1368660-mRNA-1:exon:554;Parent=Msa1368660-mRNA-1
tig0018650	exon	149999	150101	149999	ID=Msa1368660-mRNA-1:exon:555;Parent=Msa1368660-mRNA-1
tig0018650	exon	150203	151548	150203	ID=Msa1368660-mRNA-1:exon:556;Parent=Msa1368660-mRNA-1
tig0018650	five_prime_UTR	148653	148810	148653	ID=Msa1368660-mRNA-1:five_prime_utr;Parent=Msa1368660-mRNA-1
tig0018650	CDS	148811	149247	148811	ID=Msa1368660-mRNA-1:cds;Parent=Msa1368660-mRNA-1
tig0018650	CDS	149999	150101	149999	ID=Msa1368660-mRNA-1:cds;Parent=Msa1368660-mRNA-1
tig0018650	CDS	150203	151321	150203	ID=Msa1368660-mRNA-1:cds;Parent=Msa1368660-mRNA-1
tig0018650	three_prime_UTR	151322	151548	151322	ID=Msa1368660-mRNA-1:three_prime_utr;Parent=Msa1368660-mRNA-1

Gene Sequence

>Msa1368660

ATGGCGTTGGTAAATCCATTTCTTCTCCCCACCAAAACTCATTTTGCTTTGCATGTTTCACCTCCACCATCCAAACAAATACTCCTTTGGACTAACCCATCTTCCAGTTTCAGTTTCAATCTCAACAAAGGCTTGTCATCAAGCAGAAGAAAGCATGCAGGGTATGTCACCGCCACGGCAGATGTCAAAGCTGCATCAACTGTACTTGATGGGGAAGAAGATCAGAAAGTTCTAGTGGGACCTTCCAGTGAGCAAGAACGCAGGGGTGAGAGAGAACTTGCAGCCTATGATTGGAAAGAGGAATGGTACCCTTTGTACCTCACTAAGAATGTACCACACGATGCACCACTTGGTCTCACAGTGTTTGACAAGAACCTTGTTTTGTTTAAAGATGGCAATGATCAGATTCAATGCTATGAAGATCGGTGTCCTCACAGGTTAGCAAAACTATCTGAAGGCCAGTTGATTGATGGAAGGCTTGAATGCCTGTATCATGGATGGCAATTCGAAGGCGAAGGGAAATGTGTGAAGATACCTCAGCTTCCAGCTGATGCAAAAATTCCCAGGTCAGCCTGTGTTAAAACATATGAAGTGAGGGATTCTCAAGGTGTTATTTGGGTATGGATGTCACAAAAGATACCTCCAAATGTCAGTAAAATACCTTGGTTTGAGAACTTTGCAAGGCCAGGGTTTCAAGATGTTTCAACAACTCATGAACTCCCATATGATCATTCTATTCTACTGGAAAACTTGATGGATCCTGCTCATATTCCAATCTCGCATGATAGAACAGATTGGACTGCAAAGAGAGAAGATGCACAACCGCTACTTTTTGAGGTGACAGAACGAACTGATAGAGGGTTTGCAGGTTGGTGGGGACGAGAGAAAGACGGTACTAAGCCTAACTTCTTACGGTTTGAGGCTCCTTGTGTTCTACAAAATAACAGGGAAATTGTAGATAAAAATGGTGAAATAAACTACTTCAGTGGTCTGTTCCTTTGTAGGCCAACTGGACAAGGGAAATCCATGCTGATAGTGAGGTTTGGAGGAACAAAAAGATCTCCAATAGTGAAACTGTTTCCTGAATGGTACTTCCATCAGAATGCAAGCAAGGTTTTTGAACAAGACATGGGATTCTTATCATCCCAAAATGAAATTCTTTTGAAAGAGAAGGTTCCGACAAAGGAACTATACCTGAATTTAAGATCATCAGACACATGGGTTGCTGAATACAGGAAGTGGATGGACAAAGTGGGACACGGGATGCCATATCATTTTGGTCACAGCACTATTTCCTTGCCTAAAGAGCCTGCTGTAATTGAACATGCACCTGCTGGACTTGTTGCAGGACTATCAGCTTCCTCACCTGCAAAGGGGGGCATTGGGACAATGCATGCTCCAAATTTAGCAAATAGATATTTCAGGCATGTAATACATTGCAATGCATGTAGAACCGCCGTCAAAGCTTTTCAAACTTGGAAAAATGCCCTTTCGGCTGTGGCTGTTGCGTTAGCTGCATTGGCAATTCTTGTATCTGGGAGACAATGGAAAGTCCTCCTGTTGGCATCTGCATCCCTATGCTCTGTTGGAGTGTATGCTTGTTCAACAGCCATTGCATTGAATACAACAAACTTTATTAGGACACATAGGAGATTGTGA

Protein sequence

>Msa1368660

MALVNPFLLPTKTHFALHVSPPPSKQILLWTNPSSSFSFNLNKGLSSSRRKHAGYVTATADVKAASTVLDGEEDQKVLVGPSSEQERRGERELAAYDWKEEWYPLYLTKNVPHDAPLGLTVFDKNLVLFKDGNDQIQCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVKTYEVRDSQGVIWVWMSQKIPPNVSKIPWFENFARPGFQDVSTTHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLLFEVTERTDRGFAGWWGREKDGTKPNFLRFEAPCVLQNNREIVDKNGEINYFSGLFLCRPTGQGKSMLIVRFGGTKRSPIVKLFPEWYFHQNASKVFEQDMGFLSSQNEILLKEKVPTKELYLNLRSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPKEPAVIEHAPAGLVAGLSASSPAKGGIGTMHAPNLANRYFRHVIHCNACRTAVKAFQTWKNALSAVAVALAALAILVSGRQWKVLLLASASLCSVGVYACSTAIALNTTNFIRTHRRL*