AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0148430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0148430 MtrunA17_Chr1g0150601 95.739 399 15 2 1 397 1 399 0.0 786
Msa0148430 MtrunA17_Chr8g0369131 32.051 312 182 10 46 353 81 366 1.61e-42 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0148430 AT3G43540.1 67.160 338 110 1 61 397 36 373 6.45e-175 493
Msa0148430 AT3G43540.2 67.586 290 94 0 108 397 12 301 2.25e-154 437
Msa0148430 AT5G47860.1 30.645 248 151 5 81 327 100 327 3.63e-35 134

Find 77 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATCTTATAGAGTTAT+TGG 0.155973 1_4:-8759455 Msa0148430:CDS
GCTATTCCTCAACTTACTTA+TGG 0.167683 1_4:-8759596 Msa0148430:CDS
CAATGTCAAACACACATTAT+TGG 0.223972 1_4:-8756243 Msa0148430:intron
TTTCTAGCTATCGAGTAAAT+TGG 0.225245 1_4:+8757790 None:intergenic
TTGGATACACTGCTCACATC+TGG 0.279191 1_4:-8759337 Msa0148430:CDS
ATTGGATTTGCTTCCACTAT+TGG 0.306024 1_4:+8757808 None:intergenic
TGATCAAATGTCACATTATA+AGG 0.308290 1_4:+8759403 None:intergenic
AATGGTTCTGGCAAGGATTC+TGG 0.311836 1_4:+8755814 None:intergenic
TAAATCATGCAATATAGTTT+TGG 0.327894 1_4:-8755736 Msa0148430:three_prime_UTR
CTATTCCTCAACTTACTTAT+GGG 0.335315 1_4:-8759595 Msa0148430:intron
TGACAAGTTTCATTCTTGTT+TGG 0.339093 1_4:-8759356 Msa0148430:CDS
AACTTACCTACTTGCCATCT+TGG 0.343767 1_4:+8755893 None:intergenic
AGGTACTTGTCTATGTTTCA+TGG 0.346893 1_4:-8759842 Msa0148430:CDS
CTTCCACTATTGGCATCATC+TGG 0.351852 1_4:+8757818 None:intergenic
TAAGGAACCGCCTCTGTTGC+TGG 0.371759 1_4:+8758654 None:intergenic
GAACCAGTCACTAATGGTTC+TGG 0.372121 1_4:+8755802 None:intergenic
CTATGACCAACAGAGAAAAT+AGG 0.381688 1_4:+8759271 None:intergenic
AAGCTGAGCAGGTGACAAAT+TGG 0.383955 1_4:+8759303 None:intergenic
ACAGATATATTCATCAATCT+TGG 0.391014 1_4:-8755568 Msa0148430:three_prime_UTR
CTCTCCCTTTGAAGAATACT+AGG 0.391651 1_4:-8759862 Msa0148430:CDS
ATTTGTTGATCAGCTGCCTT+TGG 0.398100 1_4:-8756947 Msa0148430:CDS
ATGAATTTGATTATAGCTCT+TGG 0.412859 1_4:+8759638 None:intergenic
TTGTCACCTGCTCAGCTTGG+AGG 0.413742 1_4:-8759298 Msa0148430:CDS
TTTGATTATAGCTCTTGGTT+TGG 0.424188 1_4:+8759643 None:intergenic
AAGTTTGAACCAGTCACTAA+TGG 0.430742 1_4:+8755796 None:intergenic
GAGAGTGAATTTGAAATTTG+AGG 0.439754 1_4:+8759880 None:intergenic
AAGCCTCGTGTGGAGTCCTT+TGG 0.443070 1_4:-8756072 Msa0148430:CDS
GGCGGTTCCTTACTTTGAGC+AGG 0.447793 1_4:-8758643 Msa0148430:intron
GTTAATACCTGCTCAAAGTA+AGG 0.449253 1_4:+8758636 None:intergenic
GGTACTTGTCTATGTTTCAT+GGG 0.457860 1_4:-8759841 Msa0148430:CDS
GATTATAGCTCTTGGTTTGG+TGG 0.459125 1_4:+8759646 None:intergenic
TTCTGTTGGATCAATTCTGC+AGG 0.463556 1_4:-8757004 Msa0148430:CDS
ACAACACTTCACAATGGAAA+TGG 0.475322 1_4:-8759906 Msa0148430:exon
CCTCGTGTGGAGTCCTTTGG+TGG 0.479547 1_4:-8756069 Msa0148430:CDS
AGAGCTATAATCAAATTCAT+TGG 0.482982 1_4:-8759635 Msa0148430:CDS
CAGCCAGATGATGCCAATAG+TGG 0.500596 1_4:-8757821 Msa0148430:CDS
GGAAGACCTCCAAGCTGAGC+AGG 0.505657 1_4:+8759292 None:intergenic
CTTTGAGCTACAGCATCTGC+TGG 0.508415 1_4:+8755863 None:intergenic
AATTTGTCACCTGCTCAGCT+TGG 0.510625 1_4:-8759301 Msa0148430:CDS
TGGATACACTGCTCACATCT+GGG 0.513185 1_4:-8759336 Msa0148430:CDS
GCTCTTGGTTTGGTGGAAGT+AGG 0.513990 1_4:+8759653 None:intergenic
AAGATGGTTCTTGATTCTGT+TGG 0.514302 1_4:-8757018 Msa0148430:CDS
GGTTTGGTGGAAGTAGGTGG+TGG 0.514744 1_4:+8759659 None:intergenic
ATTGATGAATATATCTGTGT+TGG 0.515754 1_4:+8755573 None:intergenic
GGCATCATCTGGCTGACAGC+AGG 0.516429 1_4:+8757829 None:intergenic
ATCTGTTTCATCAATTGTGT+CGG 0.523576 1_4:+8756113 None:intergenic
ACAGCTTCTGATATGTATGT+TGG 0.528875 1_4:-8759734 Msa0148430:CDS
TCTTATAGAGTTATTGGCTA+AGG 0.533548 1_4:-8759449 Msa0148430:CDS
CTTGGTTTGGTGGAAGTAGG+TGG 0.537073 1_4:+8759656 None:intergenic
ATTTCCATTGTGAAGTGTTG+TGG 0.540234 1_4:+8759908 None:intergenic
AAGTACCTAGTATTCTTCAA+AGG 0.548004 1_4:+8759857 None:intergenic
CCACATCACACCATGCATCC+AGG 0.548875 1_4:-8756016 Msa0148430:intron
AGTACCTAGTATTCTTCAAA+GGG 0.551616 1_4:+8759858 None:intergenic
ATAGAGTTATTGGCTAAGGA+AGG 0.552106 1_4:-8759445 Msa0148430:CDS
TTGCCAGAACCATTAGTGAC+TGG 0.559081 1_4:-8755805 Msa0148430:CDS
GCTATAATCAAATTCATTGG+TGG 0.569849 1_4:-8759632 Msa0148430:CDS
CAGCAGATGCTGTAGCTCAA+AGG 0.573497 1_4:-8755862 Msa0148430:CDS
CCTGGATGCATGGTGTGATG+TGG 0.584311 1_4:+8756016 None:intergenic
GCTGCCTTTGGTAATGAATG+AGG 0.584490 1_4:-8756935 Msa0148430:intron
CTCGTGTGGAGTCCTTTGGT+GGG 0.599565 1_4:-8756068 Msa0148430:CDS
TGTAGGAGATGCATGGAAGA+TGG 0.609050 1_4:-8757034 Msa0148430:intron
CAGGAACCAAGATGGCAAGT+AGG 0.610138 1_4:-8755899 Msa0148430:CDS
GCACTTCTTCAAGTACTCAC+AGG 0.613217 1_4:-8758987 Msa0148430:CDS
ACTGAAATCAGGAACCAAGA+TGG 0.615679 1_4:-8755907 Msa0148430:intron
CAATACCCATAAGTAAGTTG+AGG 0.622732 1_4:+8759590 None:intergenic
GCAGGTGACAAATTGGATTG+AGG 0.624270 1_4:+8759310 None:intergenic
AGAGACACTCAAGCCTCGTG+TGG 0.629689 1_4:-8756082 Msa0148430:CDS
AGTCACTAATGGTTCTGGCA+AGG 0.630771 1_4:+8755807 None:intergenic
AATTCTGCAGGAAAGCGAGA+AGG 0.631851 1_4:-8756992 Msa0148430:CDS
CAACGTGTGTAGGAGATGCA+TGG 0.637363 1_4:-8757041 Msa0148430:intron
CTTTCCACAACACTTCACAA+TGG 0.638101 1_4:-8759912 Msa0148430:exon
CATACCTCATTCATTACCAA+AGG 0.639421 1_4:+8756931 None:intergenic
CAACAACAGACCAGCAACAG+AGG 0.640280 1_4:-8758664 Msa0148430:CDS
CCACCAAAGGACTCCACACG+AGG 0.646706 1_4:+8756069 None:intergenic
TCGATAGCTAGAAATGCACC+AGG 0.665256 1_4:-8757781 Msa0148430:intron
TCTCTCTGTCAGGTTACACA+AGG 0.682754 1_4:-8756323 Msa0148430:intron
CAACAGACCAGCAACAGAGG+CGG 0.696154 1_4:-8758661 Msa0148430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACATTAAAATAAACAAAA+GGG + chr1_4:8755990-8756009 None:intergenic 10.0%
!! TTTACATTAAAATAAACAAA+AGG + chr1_4:8755991-8756010 None:intergenic 10.0%
!! AAATGAAATAAATGATTTAT+AGG + chr1_4:8759567-8759586 None:intergenic 10.0%
!! GATTATAAAACTTTATAATC+TGG - chr1_4:8756683-8756702 Msa0148430:intron 15.0%
!!! AAACAATGTTTTATACTTTT+AGG + chr1_4:8757123-8757142 None:intergenic 15.0%
!!! TAAAAGTATAAAACATTGTT+TGG - chr1_4:8757122-8757141 Msa0148430:intron 15.0%
!!! TTTTCTTTTTCTTTTTTTTG+AGG - chr1_4:8757884-8757903 Msa0148430:intron 15.0%
!!! TTTCTTTTTCTTTTTTTTGA+GGG - chr1_4:8757885-8757904 Msa0148430:intron 15.0%
!!! TTCAATAATAACTAGTATTT+TGG - chr1_4:8758670-8758689 Msa0148430:CDS 15.0%
!!! GTTTGATTTTTTTTTCATGT+TGG - chr1_4:8756011-8756030 Msa0148430:intron 20.0%
!! TAGATATCTTATAGAGTTAT+TGG - chr1_4:8756083-8756102 Msa0148430:CDS 20.0%
!! TATCTATCTATGAACAAAAA+AGG - chr1_4:8756639-8756658 Msa0148430:intron 20.0%
!! ATCTATCTATGAACAAAAAA+GGG - chr1_4:8756640-8756659 Msa0148430:intron 20.0%
!!! TGTTCGAATGTTTTAATTTA+TGG - chr1_4:8756724-8756743 Msa0148430:intron 20.0%
!! CTTATAGTTATATCAATTCA+AGG - chr1_4:8756797-8756816 Msa0148430:intron 20.0%
!! AAAAATCAATCACTCTATTA+AGG + chr1_4:8756989-8757008 None:intergenic 20.0%
!!! GAAGTTAAAATTTAGTTTGA+AGG - chr1_4:8757080-8757099 Msa0148430:intron 20.0%
!!! TTAAAATTTAGTTTGAAGGA+TGG - chr1_4:8757084-8757103 Msa0148430:intron 20.0%
!! TGTGTAAATATATATTATCC+AGG + chr1_4:8757176-8757195 None:intergenic 20.0%
!! TTTACACAAAGTAATTAAAG+TGG - chr1_4:8757188-8757207 Msa0148430:intron 20.0%
!! TGTATATATGTGCAAATAAA+TGG - chr1_4:8757328-8757347 Msa0148430:intron 20.0%
!! GTATATATGTGCAAATAAAT+GGG - chr1_4:8757329-8757348 Msa0148430:intron 20.0%
!! TCAATTAGTATAAGCATTAT+CGG - chr1_4:8757421-8757440 Msa0148430:intron 20.0%
!!! TTCTTTTTCTTTTTTTTGAG+GGG - chr1_4:8757886-8757905 Msa0148430:intron 20.0%
!! CTATTGTTTGAATAAATTAG+AGG - chr1_4:8758151-8758170 Msa0148430:intron 20.0%
!! TCTCATTAAGAATTACTAAT+AGG + chr1_4:8758350-8758369 None:intergenic 20.0%
!! TATTAGTAATTCTTAATGAG+AGG - chr1_4:8758349-8758368 Msa0148430:intron 20.0%
!! AAAGTAAGTTATGAGATATA+GGG + chr1_4:8759332-8759351 None:intergenic 20.0%
!! AAAAGTAAGTTATGAGATAT+AGG + chr1_4:8759333-8759352 None:intergenic 20.0%
!! GAAATAAATGATTTATAGGA+TGG + chr1_4:8759563-8759582 None:intergenic 20.0%
!!! TAAATCATGCAATATAGTTT+TGG - chr1_4:8759802-8759821 Msa0148430:CDS 20.0%
!!! GTATTTATTAGCCTTAATAA+TGG + chr1_4:8759905-8759924 None:intergenic 20.0%
!! TAAGGCTAATAAATACTTAT+TGG - chr1_4:8759909-8759928 Msa0148430:exon 20.0%
!! CTAATAAATACTTATTGGAT+TGG - chr1_4:8759914-8759933 Msa0148430:exon 20.0%
! ATGAATTTGATTATAGCTCT+TGG + chr1_4:8755903-8755922 None:intergenic 25.0%
! AGAGCTATAATCAAATTCAT+TGG - chr1_4:8755903-8755922 Msa0148430:intron 25.0%
! AAATAAACAAAAGGGTAAGA+GGG + chr1_4:8755982-8756001 None:intergenic 25.0%
! AAAATAAACAAAAGGGTAAG+AGG + chr1_4:8755983-8756002 None:intergenic 25.0%
! TGATCAAATGTCACATTATA+AGG + chr1_4:8756138-8756157 None:intergenic 25.0%
! CTAAATATAACCACATATAC+TGG + chr1_4:8756377-8756396 None:intergenic 25.0%
!! TTGTTTTCAATTTGTAGCAA+TGG - chr1_4:8756527-8756546 Msa0148430:intron 25.0%
!!! AATAGAGTGATTGATTTTTG+TGG - chr1_4:8756990-8757009 Msa0148430:CDS 25.0%
! TTCCATAACAAAACTTTATG+CGG + chr1_4:8757063-8757082 None:intergenic 25.0%
! AAAGTAATTAAAGTGGTGAA+TGG - chr1_4:8757195-8757214 Msa0148430:intron 25.0%
!! AATACTGGTTATGAATATGT+TGG - chr1_4:8757243-8757262 Msa0148430:intron 25.0%
! GCTTTCTTAAGCATATTTAT+TGG + chr1_4:8757358-8757377 None:intergenic 25.0%
!! CTTCCTGACTTAATTTTATA+TGG - chr1_4:8757579-8757598 Msa0148430:intron 25.0%
! GTATGAAGATGAATGATATA+AGG + chr1_4:8757605-8757624 None:intergenic 25.0%
!!! CATTTTTTGAATGTACAGTT+TGG - chr1_4:8757797-8757816 Msa0148430:CDS 25.0%
! AATCTCTAAATTCACTACAT+AGG + chr1_4:8758012-8758031 None:intergenic 25.0%
!! TGTTCTAAATTCAAAAGTCT+TGG - chr1_4:8758047-8758066 Msa0148430:intron 25.0%
! TTAAAATCAGTTAATGCGAT+AGG - chr1_4:8758091-8758110 Msa0148430:intron 25.0%
! TGTTTGAATAAATTAGAGGA+AGG - chr1_4:8758155-8758174 Msa0148430:intron 25.0%
! CATTAAGAATTACTAATAGG+AGG + chr1_4:8758347-8758366 None:intergenic 25.0%
! CATTTCAGAGATTAACTATA+AGG - chr1_4:8758431-8758450 Msa0148430:intron 25.0%
!!! TATGTGTTAACTGTTGATTT+TGG - chr1_4:8758626-8758645 Msa0148430:intron 25.0%
! AAGGGATTATAAACTTCAAA+TGG + chr1_4:8758875-8758894 None:intergenic 25.0%
!! TTTGAAGTTTATAATCCCTT+AGG - chr1_4:8758875-8758894 Msa0148430:intron 25.0%
!! CAGTAATTTGTAAAAAGAGT+GGG + chr1_4:8759149-8759168 None:intergenic 25.0%
!!! CATAACTTACTTTTGAAAGA+CGG - chr1_4:8759339-8759358 Msa0148430:CDS 25.0%
! TAAACCAACTACCATTATTA+AGG - chr1_4:8759891-8759910 Msa0148430:CDS 25.0%
! ATTGATGAATATATCTGTGT+TGG + chr1_4:8759968-8759987 None:intergenic 25.0%
! ACAGATATATTCATCAATCT+TGG - chr1_4:8759970-8759989 Msa0148430:five_prime_UTR 25.0%
! GAGAGTGAATTTGAAATTTG+AGG + chr1_4:8755661-8755680 None:intergenic 30.0%
AGTACCTAGTATTCTTCAAA+GGG + chr1_4:8755683-8755702 None:intergenic 30.0%
AAGTACCTAGTATTCTTCAA+AGG + chr1_4:8755684-8755703 None:intergenic 30.0%
TTTGATTATAGCTCTTGGTT+TGG + chr1_4:8755898-8755917 None:intergenic 30.0%
GCTATAATCAAATTCATTGG+TGG - chr1_4:8755906-8755925 Msa0148430:intron 30.0%
CTATTCCTCAACTTACTTAT+GGG - chr1_4:8755943-8755962 Msa0148430:intron 30.0%
! TCTTATAGAGTTATTGGCTA+AGG - chr1_4:8756089-8756108 Msa0148430:CDS 30.0%
TGACAAGTTTCATTCTTGTT+TGG - chr1_4:8756182-8756201 Msa0148430:intron 30.0%
TAGTTTAGTACCAATCTTAC+TGG - chr1_4:8756476-8756495 Msa0148430:intron 30.0%
TACCAATCTTACTGGAATTA+AGG - chr1_4:8756484-8756503 Msa0148430:intron 30.0%
TACCTTAATTCCAGTAAGAT+TGG + chr1_4:8756489-8756508 None:intergenic 30.0%
!! ATTTTCTGAGAAACTACCTA+AGG - chr1_4:8756580-8756599 Msa0148430:intron 30.0%
CAGAAATATAACCAAACCTT+AGG + chr1_4:8756599-8756618 None:intergenic 30.0%
! CTAAGGTTTGGTTATATTTC+TGG - chr1_4:8756597-8756616 Msa0148430:intron 30.0%
!!! AAAAGGGTTTTATTGAGACA+TGG - chr1_4:8756656-8756675 Msa0148430:intron 30.0%
ATTCAAGGAATGTGATGAAA+AGG - chr1_4:8756812-8756831 Msa0148430:intron 30.0%
! GAAAAGGTATGTATCTCTTA+TGG - chr1_4:8756828-8756847 Msa0148430:intron 30.0%
! GATTTTTGTGGTTGTGATTA+AGG - chr1_4:8757002-8757021 Msa0148430:CDS 30.0%
! TTGACATTTTGTGTTTAACC+TGG - chr1_4:8757155-8757174 Msa0148430:intron 30.0%
AATCTAAGCATGCTAAATAC+TGG - chr1_4:8757228-8757247 Msa0148430:intron 30.0%
ATTGCATCTGCATGTATAAA+TGG + chr1_4:8757396-8757415 None:intergenic 30.0%
! TAAACTTTCCAGTAAGTTGA+TGG + chr1_4:8757451-8757470 None:intergenic 30.0%
! ACATTAAATTTTGCTGCTGA+TGG - chr1_4:8757493-8757512 Msa0148430:intron 30.0%
AGGCCATATAAAATTAAGTC+AGG + chr1_4:8757585-8757604 None:intergenic 30.0%
!! GTTTTGAATCACAATTGACA+CGG + chr1_4:8757663-8757682 None:intergenic 30.0%
!! TTTCTAGCTATCGAGTAAAT+TGG + chr1_4:8757751-8757770 None:intergenic 30.0%
! TACTGATGAAGTTTTCCAAA+AGG - chr1_4:8757853-8757872 Msa0148430:intron 30.0%
! AAGAAAAGAACACTTCCTTT+TGG + chr1_4:8757871-8757890 None:intergenic 30.0%
!!! TTCTTTTTTTTGAGGGGAAA+AGG - chr1_4:8757892-8757911 Msa0148430:intron 30.0%
CACTACATAGGAAATATAAC+AGG + chr1_4:8758000-8758019 None:intergenic 30.0%
AACAATATGTCAGAGAGATT+TGG - chr1_4:8758261-8758280 Msa0148430:intron 30.0%
!!! TTGCTGTTGGTTTTTTCTAT+AGG - chr1_4:8758700-8758719 Msa0148430:intron 30.0%
! GCTTTTATAGACTAACCTAA+GGG + chr1_4:8758893-8758912 None:intergenic 30.0%
! AGCTTTTATAGACTAACCTA+AGG + chr1_4:8758894-8758913 None:intergenic 30.0%
AAAGCTTATGATGATCTTTG+TGG - chr1_4:8758908-8758927 Msa0148430:intron 30.0%
TCATAGATCATAATAGACCA+TGG + chr1_4:8758934-8758953 None:intergenic 30.0%
! CCAGTAATTTGTAAAAAGAG+TGG + chr1_4:8759150-8759169 None:intergenic 30.0%
! CCACTCTTTTTACAAATTAC+TGG - chr1_4:8759147-8759166 Msa0148430:intron 30.0%
CAATGTCAAACACACATTAT+TGG - chr1_4:8759295-8759314 Msa0148430:CDS 30.0%
! GTCTTTCTTTTTGTCTCTTA+AGG - chr1_4:8759390-8759409 Msa0148430:CDS 30.0%
ATCTGTTTCATCAATTGTGT+CGG + chr1_4:8759428-8759447 None:intergenic 30.0%
ATAGAAAAAGTAGGATTGAG+TGG - chr1_4:8759496-8759515 Msa0148430:intron 30.0%
!! TTAGCCTTAATAATGGTAGT+TGG + chr1_4:8759898-8759917 None:intergenic 30.0%
!! ATTTCCATTGTGAAGTGTTG+TGG + chr1_4:8755633-8755652 None:intergenic 35.0%
ACAACACTTCACAATGGAAA+TGG - chr1_4:8755632-8755651 Msa0148430:intron 35.0%
AGGTACTTGTCTATGTTTCA+TGG - chr1_4:8755696-8755715 Msa0148430:three_prime_UTR 35.0%
GGTACTTGTCTATGTTTCAT+GGG - chr1_4:8755697-8755716 Msa0148430:three_prime_UTR 35.0%
ACAGCTTCTGATATGTATGT+TGG - chr1_4:8755804-8755823 Msa0148430:CDS 35.0%
GCTATTCCTCAACTTACTTA+TGG - chr1_4:8755942-8755961 Msa0148430:intron 35.0%
CAATACCCATAAGTAAGTTG+AGG + chr1_4:8755951-8755970 None:intergenic 35.0%
! ATAGAGTTATTGGCTAAGGA+AGG - chr1_4:8756093-8756112 Msa0148430:CDS 35.0%
!!! TAAGGAAGGTTTTGTTGTTG+TGG - chr1_4:8756107-8756126 Msa0148430:CDS 35.0%
CTATGACCAACAGAGAAAAT+AGG + chr1_4:8756270-8756289 None:intergenic 35.0%
! CTATTTTCTCTGTTGGTCAT+AGG - chr1_4:8756268-8756287 Msa0148430:CDS 35.0%
CGAAATATCAATGTCGTGTT+TGG - chr1_4:8756428-8756447 Msa0148430:intron 35.0%
AGGTATGTATCTCTTATGGA+AGG - chr1_4:8756832-8756851 Msa0148430:intron 35.0%
GTTAATACCTGCTCAAAGTA+AGG + chr1_4:8756905-8756924 None:intergenic 35.0%
ATTAAAGTGGTGAATGGTGA+TGG - chr1_4:8757201-8757220 Msa0148430:intron 35.0%
TACTGGACAGTTAGAGTAAA+GGG + chr1_4:8757531-8757550 None:intergenic 35.0%
! AGGAAGCATGTTTATTTGAG+TGG + chr1_4:8757565-8757584 None:intergenic 35.0%
! ATTGGATTTGCTTCCACTAT+TGG + chr1_4:8757733-8757752 None:intergenic 35.0%
TTCAAAAAATGCGCAATCTC+AGG + chr1_4:8757788-8757807 None:intergenic 35.0%
CATAGGAAATATAACAGGAG+TGG + chr1_4:8757995-8758014 None:intergenic 35.0%
!! ACTGACTTTGGTCAGTTTTA+TGG + chr1_4:8758305-8758324 None:intergenic 35.0%
!! AAAGTCAGTTTTGACCTTCT+CGG - chr1_4:8758316-8758335 Msa0148430:intron 35.0%
AGAATTACTAATAGGAGGAG+AGG + chr1_4:8758342-8758361 None:intergenic 35.0%
CACATTCTTGTGGAATTCAT+TGG - chr1_4:8758377-8758396 Msa0148430:intron 35.0%
AAGATGGTTCTTGATTCTGT+TGG - chr1_4:8758520-8758539 Msa0148430:intron 35.0%
CATACCTCATTCATTACCAA+AGG + chr1_4:8758610-8758629 None:intergenic 35.0%
! TTTTGGTCAGATATTGCTGT+TGG - chr1_4:8758687-8758706 Msa0148430:CDS 35.0%
GGCAAATCTTAGTAAGTTTG+TGG - chr1_4:8758721-8758740 Msa0148430:intron 35.0%
!! TTAGTTTCTGAGATCAAACC+CGG - chr1_4:8758749-8758768 Msa0148430:intron 35.0%
!!! TCAATGAAGGAGTTTTAAGC+CGG + chr1_4:8758780-8758799 None:intergenic 35.0%
TAACAATATTTGTCCCACGA+AGG + chr1_4:8758826-8758845 None:intergenic 35.0%
AAGCAAAGTTAACTGCGAAA+AGG + chr1_4:8758852-8758871 None:intergenic 35.0%
! AAGCAATCACGATTTTCAGA+TGG + chr1_4:8759263-8759282 None:intergenic 35.0%
! TTTTTCTATTGTCCCACCAA+AGG + chr1_4:8759485-8759504 None:intergenic 35.0%
!! GTTGCTTCTTTTTCACTGAT+TGG - chr1_4:8759601-8759620 Msa0148430:CDS 35.0%
AAGTTTGAACCAGTCACTAA+TGG + chr1_4:8759745-8759764 None:intergenic 35.0%
!! TGACTGGTTCAAACTTTTTG+AGG - chr1_4:8759749-8759768 Msa0148430:CDS 35.0%
!! TTTTTGAGGATTGAAGTGCT+AGG - chr1_4:8759763-8759782 Msa0148430:CDS 35.0%
!! TTTTGAGGATTGAAGTGCTA+GGG - chr1_4:8759764-8759783 Msa0148430:CDS 35.0%
CTTTCCACAACACTTCACAA+TGG - chr1_4:8755626-8755645 Msa0148430:intron 40.0%
! CTCTCCCTTTGAAGAATACT+AGG - chr1_4:8755676-8755695 Msa0148430:three_prime_UTR 40.0%
!! GATTATAGCTCTTGGTTTGG+TGG + chr1_4:8755895-8755914 None:intergenic 40.0%
!!! TTCATTGGTGGTGCTTTTGT+TGG - chr1_4:8755918-8755937 Msa0148430:intron 40.0%
! GGTCTTCCTATTTTCTCTGT+TGG - chr1_4:8756261-8756280 Msa0148430:CDS 40.0%
! GTACTGACACTTCAGATTCA+AGG - chr1_4:8756305-8756324 Msa0148430:CDS 40.0%
CTTCAGATTCAAGGTGTATC+CGG - chr1_4:8756314-8756333 Msa0148430:CDS 40.0%
CACATATACTGGTGTCTTGT+CGG + chr1_4:8756366-8756385 None:intergenic 40.0%
CTGAGAAACTACCTAAGGTT+TGG - chr1_4:8756585-8756604 Msa0148430:intron 40.0%
!! TGGTTATATTTCTGGCTGCT+AGG - chr1_4:8756605-8756624 Msa0148430:intron 40.0%
!! GGTTATATTTCTGGCTGCTA+GGG - chr1_4:8756606-8756625 Msa0148430:intron 40.0%
GCAAGGCATATAGAGTCTAT+TGG + chr1_4:8757034-8757053 None:intergenic 40.0%
!!! CGCCGCATAAAGTTTTGTTA+TGG - chr1_4:8757058-8757077 Msa0148430:intron 40.0%
ACTGGACAGTTAGAGTAAAG+GGG + chr1_4:8757530-8757549 None:intergenic 40.0%
GTACTGGACAGTTAGAGTAA+AGG + chr1_4:8757532-8757551 None:intergenic 40.0%
! AGGAGTGGTAATGAATGTGT+AGG + chr1_4:8757980-8757999 None:intergenic 40.0%
! AGATACCAGTTCTAGCAGAA+TGG + chr1_4:8758133-8758152 None:intergenic 40.0%
! GAGAAGGTCAAAACTGACTT+TGG + chr1_4:8758317-8758336 None:intergenic 40.0%
AGAGGTCTAACACATTCTTG+TGG - chr1_4:8758367-8758386 Msa0148430:intron 40.0%
TTCTGTTGGATCAATTCTGC+AGG - chr1_4:8758534-8758553 Msa0148430:intron 40.0%
! ATTTGTTGATCAGCTGCCTT+TGG - chr1_4:8758591-8758610 Msa0148430:intron 40.0%
!! TAGTTTCTGAGATCAAACCC+GGG - chr1_4:8758750-8758769 Msa0148430:intron 40.0%
TATGATGATCTTTGTGGCCA+TGG - chr1_4:8758914-8758933 Msa0148430:intron 40.0%
ACACCTAGACTTTAGACTGT+AGG + chr1_4:8759052-8759071 None:intergenic 40.0%
TTCCTTGCAAGACGTATGTT+GGG + chr1_4:8759104-8759123 None:intergenic 40.0%
TTTCCTTGCAAGACGTATGT+TGG + chr1_4:8759105-8759124 None:intergenic 40.0%
CGTGTATATATCTCTCTGTC+AGG - chr1_4:8759205-8759224 Msa0148430:intron 40.0%
! TCACGATTTTCAGATGGTGT+TGG + chr1_4:8759257-8759276 None:intergenic 40.0%
!! TTTTGAAAGACGGCTAGCAT+TGG - chr1_4:8759349-8759368 Msa0148430:CDS 40.0%
GGTGGGACAATAGAAAAAGT+AGG - chr1_4:8759487-8759506 Msa0148430:intron 40.0%
! AGAAGTTTTACCTGGATGCA+TGG + chr1_4:8759535-8759554 None:intergenic 40.0%
!! GCTTCTTTTTCACTGATTGG+TGG - chr1_4:8759604-8759623 Msa0148430:CDS 40.0%
! TTGGTGGTTACACTGAAATC+AGG - chr1_4:8759620-8759639 Msa0148430:CDS 40.0%
ACTGAAATCAGGAACCAAGA+TGG - chr1_4:8759631-8759650 Msa0148430:CDS 40.0%
AACTTACCTACTTGCCATCT+TGG + chr1_4:8759648-8759667 None:intergenic 40.0%
!!! GGAAGGTTTTGTTGTTGTGG+TGG - chr1_4:8756110-8756129 Msa0148430:CDS 45.0%
TTGGATACACTGCTCACATC+TGG - chr1_4:8756201-8756220 Msa0148430:intron 45.0%
TGGATACACTGCTCACATCT+GGG - chr1_4:8756202-8756221 Msa0148430:intron 45.0%
GCAGGTGACAAATTGGATTG+AGG + chr1_4:8756231-8756250 None:intergenic 45.0%
AAGCTGAGCAGGTGACAAAT+TGG + chr1_4:8756238-8756257 None:intergenic 45.0%
AATTTGTCACCTGCTCAGCT+TGG - chr1_4:8756237-8756256 Msa0148430:intron 45.0%
CGACAAGACACCAGTATATG+TGG - chr1_4:8756364-8756383 Msa0148430:intron 45.0%
GCACTTCTTCAAGTACTCAC+AGG - chr1_4:8756551-8756570 Msa0148430:intron 45.0%
ACAAAACTTTATGCGGCGAC+TGG + chr1_4:8757056-8757075 None:intergenic 45.0%
TCGGCATACCATCAACTTAC+TGG - chr1_4:8757440-8757459 Msa0148430:intron 45.0%
CTTCCACTATTGGCATCATC+TGG + chr1_4:8757723-8757742 None:intergenic 45.0%
TCGATAGCTAGAAATGCACC+AGG - chr1_4:8757757-8757776 Msa0148430:intron 45.0%
CTCAACCATTCTGCTAGAAC+TGG - chr1_4:8758125-8758144 Msa0148430:intron 45.0%
ATGTCATCTGCAACGTGTGT+AGG - chr1_4:8758487-8758506 Msa0148430:intron 45.0%
TGTAGGAGATGCATGGAAGA+TGG - chr1_4:8758504-8758523 Msa0148430:intron 45.0%
AATTCTGCAGGAAAGCGAGA+AGG - chr1_4:8758546-8758565 Msa0148430:intron 45.0%
!! GCTGCCTTTGGTAATGAATG+AGG - chr1_4:8758603-8758622 Msa0148430:intron 45.0%
!!! ATGAAGGAGTTTTAAGCCGG+AGG + chr1_4:8758777-8758796 None:intergenic 45.0%
GGTGAGATAAGGGTCAATGA+AGG + chr1_4:8758793-8758812 None:intergenic 45.0%
!! TAGCTCGGTTGGTGAGATAA+GGG + chr1_4:8758803-8758822 None:intergenic 45.0%
CTTTAGACTGTAGGCGTCTT+TGG + chr1_4:8759043-8759062 None:intergenic 45.0%
! ACGCCTACAGTCTAAAGTCT+AGG - chr1_4:8759046-8759065 Msa0148430:intron 45.0%
TCTCTCTGTCAGGTTACACA+AGG - chr1_4:8759215-8759234 Msa0148430:intron 45.0%
! TGGTGCAGAGAAGTTTTACC+TGG + chr1_4:8759543-8759562 None:intergenic 45.0%
!! AATGGTTCTGGCAAGGATTC+TGG + chr1_4:8759727-8759746 None:intergenic 45.0%
!! AGTCACTAATGGTTCTGGCA+AGG + chr1_4:8759734-8759753 None:intergenic 45.0%
TTGCCAGAACCATTAGTGAC+TGG - chr1_4:8759733-8759752 Msa0148430:CDS 45.0%
GAACCAGTCACTAATGGTTC+TGG + chr1_4:8759739-8759758 None:intergenic 45.0%
!!! TTAAAAATTAAACTTTTTTT+AGG - chr1_4:8755560-8755579 Msa0148430:three_prime_UTR 5.0%
!!! CTATTTTATAAAATTATTAT+TGG + chr1_4:8758994-8759013 None:intergenic 5.0%
!! CTTGGTTTGGTGGAAGTAGG+TGG + chr1_4:8755885-8755904 None:intergenic 50.0%
!! GCTCTTGGTTTGGTGGAAGT+AGG + chr1_4:8755888-8755907 None:intergenic 50.0%
ATCCGGTGTTCGACACATGT+CGG - chr1_4:8756331-8756350 Msa0148430:intron 50.0%
CAACAACAGACCAGCAACAG+AGG - chr1_4:8756874-8756893 Msa0148430:intron 50.0%
!! GAGTGGTTCTGATGCTGTAC+TGG + chr1_4:8757548-8757567 None:intergenic 50.0%
! TGCATTGATGTCCTGCAGCT+AGG - chr1_4:8757685-8757704 Msa0148430:intron 50.0%
CAGCCAGATGATGCCAATAG+TGG - chr1_4:8757717-8757736 Msa0148430:intron 50.0%
CAACGTGTGTAGGAGATGCA+TGG - chr1_4:8758497-8758516 Msa0148430:intron 50.0%
!! GTAGCTCGGTTGGTGAGATA+AGG + chr1_4:8758804-8758823 None:intergenic 50.0%
TTTGTCCCACGAAGGTAGCT+CGG + chr1_4:8758818-8758837 None:intergenic 50.0%
AGCCCAACATACGTCTTGCA+AGG - chr1_4:8759099-8759118 Msa0148430:intron 50.0%
CAGGAACCAAGATGGCAAGT+AGG - chr1_4:8759639-8759658 Msa0148430:CDS 50.0%
CTTTGAGCTACAGCATCTGC+TGG + chr1_4:8759678-8759697 None:intergenic 50.0%
CAGCAGATGCTGTAGCTCAA+AGG - chr1_4:8759676-8759695 Msa0148430:CDS 50.0%
!! GGTTTGGTGGAAGTAGGTGG+TGG + chr1_4:8755882-8755901 None:intergenic 55.0%
TTGTCACCTGCTCAGCTTGG+AGG - chr1_4:8756240-8756259 Msa0148430:intron 55.0%
CACCGACATGTGTCGAACAC+CGG + chr1_4:8756336-8756355 None:intergenic 55.0%
CAACAGACCAGCAACAGAGG+CGG - chr1_4:8756877-8756896 Msa0148430:intron 55.0%
TAAGGAACCGCCTCTGTTGC+TGG + chr1_4:8756887-8756906 None:intergenic 55.0%
GGCGGTTCCTTACTTTGAGC+AGG - chr1_4:8756895-8756914 Msa0148430:intron 55.0%
ACTTTATGCGGCGACTGGCA+AGG + chr1_4:8757051-8757070 None:intergenic 55.0%
GCGCAATCTCAGGTGATACC+TGG + chr1_4:8757778-8757797 None:intergenic 55.0%
AATAGGAGGAGAGGCCGAGA+AGG + chr1_4:8758333-8758352 None:intergenic 55.0%
!!! AGTTTTAAGCCGGAGGTCCC+GGG + chr1_4:8758770-8758789 None:intergenic 55.0%
!!! GAGTTTTAAGCCGGAGGTCC+CGG + chr1_4:8758771-8758790 None:intergenic 55.0%
ACCAACCGAGCTACCTTCGT+GGG - chr1_4:8758810-8758829 Msa0148430:intron 55.0%
AGAGACACTCAAGCCTCGTG+TGG - chr1_4:8759456-8759475 Msa0148430:intron 55.0%
AAGCCTCGTGTGGAGTCCTT+TGG - chr1_4:8759466-8759485 Msa0148430:intron 55.0%
CTCGTGTGGAGTCCTTTGGT+GGG - chr1_4:8759470-8759489 Msa0148430:intron 55.0%
CCTGGATGCATGGTGTGATG+TGG + chr1_4:8759525-8759544 None:intergenic 55.0%
CCACATCACACCATGCATCC+AGG - chr1_4:8759522-8759541 Msa0148430:intron 55.0%
GGAAGACCTCCAAGCTGAGC+AGG + chr1_4:8756249-8756268 None:intergenic 60.0%
TGACAGCAGGACCTAGCTGC+AGG + chr1_4:8757699-8757718 None:intergenic 60.0%
GGCATCATCTGGCTGACAGC+AGG + chr1_4:8757712-8757731 None:intergenic 60.0%
GAGATCAAACCCGGGACCTC+CGG - chr1_4:8758758-8758777 Msa0148430:intron 60.0%
CACCAACCGAGCTACCTTCG+TGG - chr1_4:8758809-8758828 Msa0148430:intron 60.0%
TCCCACGAAGGTAGCTCGGT+TGG + chr1_4:8758814-8758833 None:intergenic 60.0%
CCACCAAAGGACTCCACACG+AGG + chr1_4:8759472-8759491 None:intergenic 60.0%
CCTCGTGTGGAGTCCTTTGG+TGG - chr1_4:8759469-8759488 Msa0148430:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 8755553 8760007 8755553 ID=Msa0148430;Name=Msa0148430
chr1_4 mRNA 8755553 8760007 8755553 ID=Msa0148430-mRNA-1;Parent=Msa0148430;Name=Msa0148430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=92|1|1|1|0.88|0.8|10|195|397
chr1_4 exon 8755553 8755629 8755553 ID=Msa0148430-mRNA-1:exon:3731;Parent=Msa0148430-mRNA-1
chr1_4 exon 8755666 8755918 8755666 ID=Msa0148430-mRNA-1:exon:3730;Parent=Msa0148430-mRNA-1
chr1_4 exon 8756017 8756148 8756017 ID=Msa0148430-mRNA-1:exon:3729;Parent=Msa0148430-mRNA-1
chr1_4 exon 8756244 8756333 8756244 ID=Msa0148430-mRNA-1:exon:3728;Parent=Msa0148430-mRNA-1
chr1_4 exon 8756936 8757051 8756936 ID=Msa0148430-mRNA-1:exon:3727;Parent=Msa0148430-mRNA-1
chr1_4 exon 8757782 8757857 8757782 ID=Msa0148430-mRNA-1:exon:3726;Parent=Msa0148430-mRNA-1
chr1_4 exon 8758644 8758706 8758644 ID=Msa0148430-mRNA-1:exon:3725;Parent=Msa0148430-mRNA-1
chr1_4 exon 8758959 8759016 8758959 ID=Msa0148430-mRNA-1:exon:3724;Parent=Msa0148430-mRNA-1
chr1_4 exon 8759271 8759474 8759271 ID=Msa0148430-mRNA-1:exon:3723;Parent=Msa0148430-mRNA-1
chr1_4 exon 8759596 8760007 8759596 ID=Msa0148430-mRNA-1:exon:3722;Parent=Msa0148430-mRNA-1
chr1_4 five_prime_UTR 8759916 8760007 8759916 ID=Msa0148430-mRNA-1:five_prime_utr;Parent=Msa0148430-mRNA-1
chr1_4 CDS 8759596 8759915 8759596 ID=Msa0148430-mRNA-1:cds;Parent=Msa0148430-mRNA-1
chr1_4 CDS 8759271 8759474 8759271 ID=Msa0148430-mRNA-1:cds;Parent=Msa0148430-mRNA-1
chr1_4 CDS 8758959 8759016 8758959 ID=Msa0148430-mRNA-1:cds;Parent=Msa0148430-mRNA-1
chr1_4 CDS 8758644 8758706 8758644 ID=Msa0148430-mRNA-1:cds;Parent=Msa0148430-mRNA-1
chr1_4 CDS 8757782 8757857 8757782 ID=Msa0148430-mRNA-1:cds;Parent=Msa0148430-mRNA-1
chr1_4 CDS 8756936 8757051 8756936 ID=Msa0148430-mRNA-1:cds;Parent=Msa0148430-mRNA-1
chr1_4 CDS 8756244 8756333 8756244 ID=Msa0148430-mRNA-1:cds;Parent=Msa0148430-mRNA-1
chr1_4 CDS 8756017 8756148 8756017 ID=Msa0148430-mRNA-1:cds;Parent=Msa0148430-mRNA-1
chr1_4 CDS 8755784 8755918 8755784 ID=Msa0148430-mRNA-1:cds;Parent=Msa0148430-mRNA-1
chr1_4 three_prime_UTR 8755666 8755783 8755666 ID=Msa0148430-mRNA-1:three_prime_utr;Parent=Msa0148430-mRNA-1
chr1_4 three_prime_UTR 8755553 8755629 8755553 ID=Msa0148430-mRNA-1:three_prime_utr;Parent=Msa0148430-mRNA-1
Gene Sequence

>Msa0148430

ATGGAAATGGCAACCTCAAATTTCAAATTCACTCTCCCTTTGAAGAATACTAGGTACTTGTCTATGTTTCATGGGTTGAAACATCAACACTCAAATTCATTCAACAAATGTTTCAAACTTCAATCTTTGTCTACTAGAATAGTGTCAGCTACTACAAACACAGCTTCTGATATGTATGTTGGAAGAAACAATAGTAACAAGATTTACACAAACTTGAATTCTTGTCTTGTGATTCCACCACCTACTTCCACCAAACCAAGAGCTATAATCAAATTCATTGGTGGTGCTTTTGTTGGTGCTATTCCTCAACTTACTTATGGATATCTTATAGAGTTATTGGCTAAGGAAGGTTTTGTTGTTGTGGTGGTGCCTTATAATGTGACATTTGATCATTCTCTAGCTGCTAAACAAGTATATGACAAGTTTCATTCTTGTTTGGATACACTGCTCACATCTGGGTTGCCTCAATCCAATTTGTCACCTGCTCAGCTTGGAGGTCTTCCTATTTTCTCTGTTGGTCATAGCAATGGTGCACTTCTTCAAGTACTCACAGGAAGCTTATTTTCTGAGAAACTACCTAAGGCTAATGCTGTAATCGCTTACAACAACAGACCAGCAACAGAGGCGGTTCCTTACTTTGAGCAGCTAGGTCCTGCTGTCAGCCAGATGATGCCAATAGTGGAAGCAAATCCAATTTACTCGATAGCTAGAAATGCACCAGGAGATGCATGGAAGATGGTTCTTGATTCTGTTGGATCAATTCTGCAGGAAAGCGAGAAGGAAGTTCTGAATTCATTAACTAAATTTGTTGATCAGCTGCCTTTGGTAATGAATGAGGTTACACAAGGAGTCTCAGAGTTCAAGCCAACACCATCTGAAAATCGTGATTGCTTTAAAAGTTCGTACAATGTCAAACACACATTATTGGTGCAATTCAATTCCGACACAATTGATGAAACAGATATTCTTGAAGAGACACTCAAGCCTCGTGTGGAGTCCTTTGGTGGGACAATAGAAAAAGTAGGATTGAGTGGTAACCACATCACACCATGCATCCAGGAACCAAGATGGCAAGTAGGTAAGTTGTATACTCCAGCAGATGCTGTAGCTCAAAGGCTTAAATCTTTTTCTTTGAGTGATACCAGAATCCTTGCCAGAACCATTAGTGACTGGTTCAAACTTTTTGAGGATTGA

Protein sequence

>Msa0148430

MEMATSNFKFTLPLKNTRYLSMFHGLKHQHSNSFNKCFKLQSLSTRIVSATTNTASDMYVGRNNSNKIYTNLNSCLVIPPPTSTKPRAIIKFIGGAFVGAIPQLTYGYLIELLAKEGFVVVVVPYNVTFDHSLAAKQVYDKFHSCLDTLLTSGLPQSNLSPAQLGGLPIFSVGHSNGALLQVLTGSLFSEKLPKANAVIAYNNRPATEAVPYFEQLGPAVSQMMPIVEANPIYSIARNAPGDAWKMVLDSVGSILQESEKEVLNSLTKFVDQLPLVMNEVTQGVSEFKPTPSENRDCFKSSYNVKHTLLVQFNSDTIDETDILEETLKPRVESFGGTIEKVGLSGNHITPCIQEPRWQVGKLYTPADAVAQRLKSFSLSDTRILARTISDWFKLFED*