Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344080 | XP_013469954.1 | 94.931 | 217 | 8 | 1 | 1 | 217 | 1 | 214 | 1.93e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344080 | A0A072VQC5 | 94.931 | 217 | 8 | 1 | 1 | 217 | 1 | 214 | 9.23e-148 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093940 | Msa1344080 | 0.810322 | 1.221048e-50 | -8.615850e-47 |
| Msa0606680 | Msa1344080 | 0.806098 | 9.701460e-50 | -8.615850e-47 |
| Msa0729590 | Msa1344080 | 0.809605 | 1.741882e-50 | -8.615850e-47 |
| Msa0766880 | Msa1344080 | 0.806356 | 8.559686e-50 | -8.615850e-47 |
| Msa0796610 | Msa1344080 | 0.808113 | 3.632737e-50 | -8.615850e-47 |
| Msa0186510 | Msa1344080 | 0.802665 | 5.038106e-49 | -8.615850e-47 |
| Msa0230980 | Msa1344080 | 0.819803 | 9.585568e-53 | -8.615850e-47 |
| Msa1242990 | Msa1344080 | 0.805394 | 1.363858e-49 | -8.615850e-47 |
| Msa1342400 | Msa1344080 | 0.821279 | 4.392298e-53 | -8.615850e-47 |
| Msa1344080 | Msa1344610 | 0.914499 | 1.783898e-84 | -8.615850e-47 |
| Msa1344080 | Msa1346540 | 0.898207 | 6.651832e-77 | -8.615850e-47 |
| Msa1344080 | Msa1349850 | 0.810604 | 1.061433e-50 | -8.615850e-47 |
| Msa1344080 | Msa1389310 | -0.802380 | 5.766944e-49 | -8.615850e-47 |
| Msa0369580 | Msa1344080 | 0.809386 | 1.941193e-50 | -8.615850e-47 |
| Msa0403720 | Msa1344080 | 0.807323 | 5.345693e-50 | -8.615850e-47 |
| Msa0404180 | Msa1344080 | 0.805016 | 1.635950e-49 | -8.615850e-47 |
| Msa0417000 | Msa1344080 | 0.826796 | 2.228845e-54 | -8.615850e-47 |
| Msa0463820 | Msa1344080 | 0.810432 | 1.156338e-50 | -8.615850e-47 |
| Msa0464050 | Msa1344080 | -0.801122 | 1.045160e-48 | -8.615850e-47 |
| Msa1057320 | Msa1344080 | 0.821685 | 3.540707e-53 | -8.615850e-47 |
| Msa1101980 | Msa1344080 | 0.811491 | 6.818512e-51 | -8.615850e-47 |
| Msa1102200 | Msa1344080 | 0.802408 | 5.691646e-49 | -8.615850e-47 |
| Msa0238960 | Msa1344080 | 0.800698 | 1.275325e-48 | -8.615850e-47 |
| Msa0256430 | Msa1344080 | 0.800177 | 1.628694e-48 | -8.615850e-47 |
| Msa0264020 | Msa1344080 | 0.815655 | 8.272312e-52 | -8.615850e-47 |
| Msa0270460 | Msa1344080 | 0.811435 | 7.010148e-51 | -8.615850e-47 |
| Msa0302020 | Msa1344080 | 0.808044 | 3.757226e-50 | -8.615850e-47 |
| Msa0309060 | Msa1344080 | 0.810809 | 9.581228e-51 | -8.615850e-47 |
| Msa0334180 | Msa1344080 | 0.828934 | 6.820005e-55 | -8.615850e-47 |
| Msa0339340 | Msa1344080 | 0.830329 | 3.122638e-55 | -8.615850e-47 |
| Msa0490200 | Msa1344080 | 0.815331 | 9.765928e-52 | -8.615850e-47 |
| Msa0511600 | Msa1344080 | 0.800427 | 1.448616e-48 | -8.615850e-47 |
| Msa0930950 | Msa1344080 | 0.806620 | 7.530977e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344080 | MtrunA17_Chr1g0206811 | 94.931 | 217 | 8 | 1 | 1 | 217 | 1 | 214 | 1.78e-151 | 419 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344080 | AT1G50020.1 | 52.830 | 212 | 88 | 5 | 8 | 217 | 8 | 209 | 4.14e-70 | 213 |
Find 52 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAATTTCTGGGAAAAT+TGG | 0.118542 | tig0006790:+8659 | None:intergenic |
| ATTATTCCATGAAGAATTTC+TGG | 0.158065 | tig0006790:+8650 | None:intergenic |
| TAGCTCCTCGGCTAAATTAA+AGG | 0.278659 | tig0006790:-5704 | None:intergenic |
| TCAACACTTCCAAGTCTTCC+AGG | 0.320266 | tig0006790:-8578 | Msa1344080:CDS |
| GGAACATTCTTCTTGGCATT+TGG | 0.330859 | tig0006790:-6608 | Msa1344080:CDS |
| GAATCAGAGGGAACGGTCTA+TGG | 0.337234 | tig0006790:-7284 | Msa1344080:CDS |
| ACTTGGAGGAACATTCTTCT+TGG | 0.347709 | tig0006790:-6615 | Msa1344080:CDS |
| CGTCTGTGAATGAAGAAGAT+AGG | 0.375141 | tig0006790:-7357 | Msa1344080:CDS |
| GATTACAAGCAAACCAACTA+TGG | 0.380799 | tig0006790:-7394 | Msa1344080:CDS |
| CTTCCGTCGTGGACAAAACT+TGG | 0.396329 | tig0006790:+5798 | Msa1344080:intergenic |
| TCATCTTCTAAGAGTGCATA+AGG | 0.401040 | tig0006790:+5741 | Msa1344080:intergenic |
| CTCTTCATCAACTCCATAGT+TGG | 0.411357 | tig0006790:+7381 | Msa1344080:intergenic |
| GGGAAAATTGGATTGTGAAA+GGG | 0.446334 | tig0006790:+8671 | Msa1344080:intergenic |
| TGGGAAAATTGGATTGTGAA+AGG | 0.466227 | tig0006790:+8670 | Msa1344080:intergenic |
| GTGAAAGGGAAAGTTGAGAG+AGG | 0.470279 | tig0006790:+8685 | Msa1344080:intergenic |
| TTATTCCATGAAGAATTTCT+GGG | 0.471291 | tig0006790:+8651 | Msa1344080:intergenic |
| GTCTGTGAATGAAGAAGATA+GGG | 0.475928 | tig0006790:-7356 | Msa1344080:CDS |
| ACAACAGACCCTGGAAGACT+TGG | 0.496923 | tig0006790:+8569 | Msa1344080:intergenic |
| CAACACTTCCAAGTCTTCCA+GGG | 0.512123 | tig0006790:-8577 | Msa1344080:CDS |
| AAACTTCTATTGACACTTGG+AGG | 0.515017 | tig0006790:-6629 | Msa1344080:CDS |
| TAATCCTCAAGCAATGATGT+AGG | 0.515998 | tig0006790:+7412 | Msa1344080:intergenic |
| AATCCTCAAGCAATGATGTA+GGG | 0.519413 | tig0006790:+7413 | Msa1344080:intergenic |
| ACTATCACCTCCACAATATG+TGG | 0.522313 | tig0006790:-5766 | Msa1344080:CDS |
| CTCTAGACCCCTCTCAACAT+TGG | 0.523903 | tig0006790:+7306 | Msa1344080:intergenic |
| TTGAAGGAATTGAAGAGGAG+AGG | 0.525995 | tig0006790:-7442 | Msa1344080:CDS |
| TGAAAGGGAAAGTTGAGAGA+GGG | 0.536654 | tig0006790:+8686 | Msa1344080:intergenic |
| CATCTTCTAAGAGTGCATAA+GGG | 0.537509 | tig0006790:+5742 | Msa1344080:intergenic |
| GCATAAGGGTCCACATATTG+TGG | 0.543635 | tig0006790:+5756 | Msa1344080:intergenic |
| AGAGGGGTCTAGAGAATCAG+AGG | 0.544137 | tig0006790:-7297 | Msa1344080:CDS |
| GTCTAGAGAATCAGAGGGAA+CGG | 0.571889 | tig0006790:-7291 | Msa1344080:CDS |
| AGGGAAAGTTGAGAGAGGGT+TGG | 0.572433 | tig0006790:+8690 | Msa1344080:intergenic |
| ATTCTCAGGAGAAGAGCCTC+CGG | 0.574850 | tig0006790:-7476 | Msa1344080:intron |
| GACCCCTACATCATTGCTTG+AGG | 0.575241 | tig0006790:-7416 | Msa1344080:CDS |
| ATGCACTCTTAGAAGATGAA+AGG | 0.586584 | tig0006790:-5737 | Msa1344080:CDS |
| GCTAAACTTCTATTGACACT+TGG | 0.589619 | tig0006790:-6632 | Msa1344080:CDS |
| AGTGTCAACCAATGTTGAGA+GGG | 0.601124 | tig0006790:-7314 | Msa1344080:CDS |
| GCCACGGTTATGAGGATCAA+CGG | 0.602581 | tig0006790:+6584 | Msa1344080:intergenic |
| AGAACTACTACAACAGACCC+TGG | 0.607538 | tig0006790:+8560 | Msa1344080:intergenic |
| CAGTGTCAACCAATGTTGAG+AGG | 0.610884 | tig0006790:-7315 | Msa1344080:CDS |
| GGATATCTCAGATAGCTCCT+CGG | 0.629394 | tig0006790:-5716 | Msa1344080:CDS |
| GTGACATCTTGCTTCCGTCG+TGG | 0.633182 | tig0006790:+5787 | Msa1344080:intergenic |
| GCTGAACAGTGAAGGTCTTG+AGG | 0.634680 | tig0006790:-7260 | Msa1344080:intron |
| ATCCTCAAGCAATGATGTAG+GGG | 0.635911 | tig0006790:+7414 | Msa1344080:intergenic |
| CAACTATGGAGTTGATGAAG+AGG | 0.637558 | tig0006790:-7380 | Msa1344080:CDS |
| GATGCCAAGAATCAAAACAA+TGG | 0.639737 | tig0006790:-8534 | Msa1344080:intron |
| TCTATGGCGCTGAACAGTGA+AGG | 0.641145 | tig0006790:-7268 | Msa1344080:CDS |
| GTCAATAGAAGTTTAGCTCG+AGG | 0.648431 | tig0006790:+6638 | Msa1344080:intergenic |
| GAGGGGTCTAGAGAATCAGA+GGG | 0.670863 | tig0006790:-7296 | Msa1344080:CDS |
| TAAGGGTCCACATATTGTGG+AGG | 0.678073 | tig0006790:+5759 | Msa1344080:intergenic |
| GTGTCAACCAATGTTGAGAG+GGG | 0.698061 | tig0006790:-7313 | Msa1344080:CDS |
| ACCGTTGATCCTCATAACCG+TGG | 0.700978 | tig0006790:-6585 | Msa1344080:CDS |
| TCTGTGAATGAAGAAGATAG+GGG | 0.748330 | tig0006790:-7355 | Msa1344080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGAAACAATTAATTTTTT+TGG | + | tig0006790:6843-6862 | Msa1344080:intergenic | 10.0% |
| !!! | ATTAATTGTTTCTTATAATA+AGG | - | tig0006790:6848-6867 | Msa1344080:intron | 10.0% |
| !!! | CAAAAAACAATTTTTATCAA+CGG | + | tig0006790:6223-6242 | Msa1344080:intergenic | 15.0% |
| !!! | TATATTTTGAGAATCAATTT+TGG | - | tig0006790:6460-6479 | Msa1344080:intron | 15.0% |
| !!! | AAAAATTTCATATTGTGTTT+TGG | - | tig0006790:6505-6524 | Msa1344080:intron | 15.0% |
| !!! | TTTTACATACTTTCTAAATA+GGG | - | tig0006790:7607-7626 | Msa1344080:intron | 15.0% |
| !! | TATTTACTACAATACAAATA+AGG | + | tig0006790:7637-7656 | Msa1344080:intergenic | 15.0% |
| !!! | AGAATATACATTTTTTCTAA+AGG | + | tig0006790:8110-8129 | Msa1344080:intergenic | 15.0% |
| !! | TTTGTGAAAAAAACATTGTT+GGG | + | tig0006790:5792-5811 | Msa1344080:intergenic | 20.0% |
| !!! | TTTTGTGAAAAAAACATTGT+TGG | + | tig0006790:5793-5812 | Msa1344080:intergenic | 20.0% |
| !!! | TGTTGAAATTTTGAAACTTT+AGG | + | tig0006790:5820-5839 | Msa1344080:intergenic | 20.0% |
| !!! | TTTTATGTATTGATGTTGAT+TGG | - | tig0006790:6056-6075 | Msa1344080:intron | 20.0% |
| !!! | AAATTGTTTTTTGAGTGAAT+TGG | - | tig0006790:6230-6249 | Msa1344080:intron | 20.0% |
| !!! | TGGTTATGTAAAATTGTTTT+TGG | - | tig0006790:6250-6269 | Msa1344080:intron | 20.0% |
| !!! | ACACAATATGAAATTTTTCT+AGG | + | tig0006790:6503-6522 | Msa1344080:intergenic | 20.0% |
| !! | TAAAGTGAAATATTTGAATG+TGG | - | tig0006790:6607-6626 | Msa1344080:CDS | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | + | tig0006790:6749-6768 | Msa1344080:intergenic | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | - | tig0006790:6754-6773 | Msa1344080:intron | 20.0% |
| !!! | TATATAAAAAATCGCTGATT+TGG | - | tig0006790:7206-7225 | Msa1344080:intron | 20.0% |
| !!! | GTTTTACATACTTTCTAAAT+AGG | - | tig0006790:7606-7625 | Msa1344080:intron | 20.0% |
| !! | ATAGTACACATTTAATGATA+TGG | - | tig0006790:7949-7968 | Msa1344080:intron | 20.0% |
| !! | TAATGTTAAACATAAACCAT+AGG | + | tig0006790:8342-8361 | Msa1344080:intergenic | 20.0% |
| ! | TTATTCCATGAAGAATTTCT+GGG | + | tig0006790:5764-5783 | Msa1344080:intergenic | 25.0% |
| ! | ATTATTCCATGAAGAATTTC+TGG | + | tig0006790:5765-5784 | Msa1344080:intergenic | 25.0% |
| !!! | CTTTAGAGTAGTAATGATTT+TGG | - | tig0006790:5915-5934 | Msa1344080:intron | 25.0% |
| ! | ATCCATCATCATACAAAAAA+AGG | + | tig0006790:6003-6022 | Msa1344080:intergenic | 25.0% |
| ! | CTTGAATATAAATACTCATG+AGG | - | tig0006790:6081-6100 | Msa1344080:intron | 25.0% |
| ! | TGATGAGTTCATATATTGTT+TGG | - | tig0006790:6111-6130 | Msa1344080:intron | 25.0% |
| ! | TTCAAGTAGAATCAATTCTA+GGG | - | tig0006790:6388-6407 | Msa1344080:intron | 25.0% |
| !!! | AGAATTGATTTTGTCATGTT+TGG | + | tig0006790:6441-6460 | Msa1344080:intergenic | 25.0% |
| ! | TCACTTTATCAAATTATCAC+AGG | + | tig0006790:6595-6614 | Msa1344080:intergenic | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | + | tig0006790:6744-6763 | Msa1344080:intergenic | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | - | tig0006790:6853-6872 | Msa1344080:intron | 25.0% |
| !!! | TATTTTTGAAGGAATTGAAG+AGG | - | tig0006790:6965-6984 | Msa1344080:intron | 25.0% |
| ! | TATTGAAGGAAAGTTAACAA+TGG | + | tig0006790:7183-7202 | Msa1344080:intergenic | 25.0% |
| ! | TATCTCTCTAATTATGAGAA+TGG | + | tig0006790:7511-7530 | Msa1344080:intergenic | 25.0% |
| ! | ATAAATATGCAAGTGATTTC+TGG | + | tig0006790:7736-7755 | Msa1344080:intergenic | 25.0% |
| ! | TTGCATATTTATCCATTTCA+GGG | - | tig0006790:7744-7763 | Msa1344080:intron | 25.0% |
| !!! | ATATTCTAGCTTATAACAGT+TGG | - | tig0006790:8123-8142 | Msa1344080:intron | 25.0% |
| ! | TGAAGAATTTCTGGGAAAAT+TGG | + | tig0006790:5756-5775 | Msa1278040:intergenic | 30.0% |
| ! | ATTTTCCCAGAAATTCTTCA+TGG | - | tig0006790:5756-5775 | Msa1344080:CDS | 30.0% |
| TGAAAAAAACATTGTTGGGT+TGG | + | tig0006790:5788-5807 | Msa1344080:intergenic | 30.0% | |
| !!! | AGCCTTTTTTTGTATGATGA+TGG | - | tig0006790:5998-6017 | Msa1344080:intron | 30.0% |
| GAATATAAATACTCATGAGG+TGG | - | tig0006790:6084-6103 | Msa1344080:intron | 30.0% | |
| GAGTTCATATATTGTTTGGA+TGG | - | tig0006790:6115-6134 | Msa1344080:intron | 30.0% | |
| ACACTTATGTCCTTATAGTT+TGG | - | tig0006790:6158-6177 | Msa1344080:intron | 30.0% | |
| !!! | TGTTTACTTGGTGTATGTTT+TGG | - | tig0006790:6193-6212 | Msa1344080:intron | 30.0% |
| TGAAGCAAGTGATTTATGTT+CGG | - | tig0006790:6285-6304 | Msa1344080:intron | 30.0% | |
| CTTCAAGTAGAATCAATTCT+AGG | - | tig0006790:6387-6406 | Msa1344080:intron | 30.0% | |
| TCAAGTAGAATCAATTCTAG+GGG | - | tig0006790:6389-6408 | Msa1344080:intron | 30.0% | |
| ! | TAACTAACTGTACCTTTTGA+TGG | - | tig0006790:6889-6908 | Msa1344080:intron | 30.0% |
| GAGAATCAATACAGTATTAG+CGG | + | tig0006790:6922-6941 | Msa1344080:intergenic | 30.0% | |
| !! | CTAATACTGTATTGATTCTC+AGG | - | tig0006790:6922-6941 | Msa1344080:intron | 30.0% |
| TCCTTCAAAAATAATGACTC+CGG | + | tig0006790:6958-6977 | Msa1344080:intergenic | 30.0% | |
| ATAAACAGCCAAATCAAGTT+TGG | + | tig0006790:7346-7365 | Msa1344080:intergenic | 30.0% | |
| TAACATCTTGATCTGATGTT+TGG | - | tig0006790:7382-7401 | Msa1344080:CDS | 30.0% | |
| ! | ATCTGATGTTTGGAACTTAA+AGG | - | tig0006790:7392-7411 | Msa1344080:CDS | 30.0% |
| ! | TGTAAGCTGTATTTCTATGA+CGG | + | tig0006790:7695-7714 | Msa1344080:intergenic | 30.0% |
| CTTGCATATTTATCCATTTC+AGG | - | tig0006790:7743-7762 | Msa1344080:intron | 30.0% | |
| TAGATTACTTAACACGCAAA+CGG | + | tig0006790:7928-7947 | Msa1344080:intergenic | 30.0% | |
| GTACACATTTAATGATATGG+TGG | - | tig0006790:7952-7971 | Msa1344080:intron | 30.0% | |
| TGAAGTGAGTAACAATTTGA+TGG | - | tig0006790:8013-8032 | Msa1344080:intron | 30.0% | |
| ACTAAGACTTCAGAACATTT+AGG | - | tig0006790:8067-8086 | Msa1344080:intron | 30.0% | |
| !!! | ATTTTTTCTAAAGGAAGCTG+AGG | + | tig0006790:8101-8120 | Msa1344080:intergenic | 30.0% |
| ! | TTGATTTTGTGTCTGTTGTT+TGG | - | tig0006790:8197-8216 | Msa1344080:intron | 30.0% |
| ! | GTTTTTGTGCATTCAATTCT+TGG | - | tig0006790:8256-8275 | Msa1344080:intron | 30.0% |
| ACATAAACCATAGGATAGAT+GGG | + | tig0006790:8333-8352 | Msa1344080:intergenic | 30.0% | |
| AACATAAACCATAGGATAGA+TGG | + | tig0006790:8334-8353 | Msa1344080:intergenic | 30.0% | |
| ! | ATAGTCTTCAGTTTTCAACA+GGG | + | tig0006790:8404-8423 | Msa1344080:intergenic | 30.0% |
| ! | AATAGTCTTCAGTTTTCAAC+AGG | + | tig0006790:8405-8424 | Msa1344080:intergenic | 30.0% |
| TTTGTGCTTGTATGAAATAG+TGG | - | tig0006790:8521-8540 | Msa1344080:intron | 30.0% | |
| CAACGTTCTATATTACATGA+AGG | + | tig0006790:8559-8578 | Msa1344080:intergenic | 30.0% | |
| CATGTAATATAGAACGTTGA+TGG | - | tig0006790:8560-8579 | Msa1344080:CDS | 30.0% | |
| !!! | CTGTTTTTGTTGCAGTATTT+CGG | - | tig0006790:8590-8609 | Msa1344080:CDS | 30.0% |
| GGGAAAATTGGATTGTGAAA+GGG | + | tig0006790:5744-5763 | Msa1278040:intergenic | 35.0% | |
| TGGGAAAATTGGATTGTGAA+AGG | + | tig0006790:5745-5764 | Msa1278040:intergenic | 35.0% | |
| GATGCCAAGAATCAAAACAA+TGG | - | tig0006790:5878-5897 | Msa1344080:intron | 35.0% | |
| !!! | CTTGCCATTGTTTTGATTCT+TGG | + | tig0006790:5885-5904 | Msa1344080:intergenic | 35.0% |
| ACATGAAGGACCAAACTATA+AGG | + | tig0006790:6171-6190 | Msa1344080:intergenic | 35.0% | |
| !! | TCCTTCATGTGTTGTTTACT+TGG | - | tig0006790:6181-6200 | Msa1344080:intron | 35.0% |
| ACCAAGTAAACAACACATGA+AGG | + | tig0006790:6185-6204 | Msa1344080:intergenic | 35.0% | |
| TTCTAGGTTTCACTTCTAGA+GGG | + | tig0006790:6487-6506 | Msa1344080:intergenic | 35.0% | |
| TTTCTAGGTTTCACTTCTAG+AGG | + | tig0006790:6488-6507 | Msa1344080:intergenic | 35.0% | |
| ATTGATACAACACCAACACA+TGG | + | tig0006790:6633-6652 | Msa1344080:intergenic | 35.0% | |
| !! | TGTTGGTGTTGTATCAATGT+TGG | - | tig0006790:6635-6654 | Msa1344080:CDS | 35.0% |
| ATCAAATAGAATACTCCCTC+CGG | - | tig0006790:6722-6741 | Msa1344080:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | tig0006790:6857-6876 | Msa1344080:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | tig0006790:6856-6875 | Msa1344080:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | tig0006790:6856-6875 | Msa1344080:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | - | tig0006790:6857-6876 | Msa1344080:intron | 35.0% | |
| TAGTTATTTGATACTCCCTC+CGG | + | tig0006790:6875-6894 | Msa1344080:intergenic | 35.0% | |
| TTCAAAAATAATGACTCCGG+AGG | + | tig0006790:6955-6974 | Msa1344080:intergenic | 35.0% | |
| !!! | TCCGGAGTCATTATTTTTGA+AGG | - | tig0006790:6954-6973 | Msa1344080:intron | 35.0% |
| AATCCTCAAGCAATGATGTA+GGG | + | tig0006790:7002-7021 | Msa1344080:intergenic | 35.0% | |
| TAATCCTCAAGCAATGATGT+AGG | + | tig0006790:7003-7022 | Msa1344080:intergenic | 35.0% | |
| GATTACAAGCAAACCAACTA+TGG | - | tig0006790:7018-7037 | Msa1344080:intron | 35.0% | |
| GTCTGTGAATGAAGAAGATA+GGG | - | tig0006790:7056-7075 | Msa1344080:intron | 35.0% | |
| TCTGTGAATGAAGAAGATAG+GGG | - | tig0006790:7057-7076 | Msa1344080:intron | 35.0% | |
| !! | TTGACACTGTTTTTCTGTTC+GGG | + | tig0006790:7086-7105 | Msa1344080:intergenic | 35.0% |
| !! | GTTGACACTGTTTTTCTGTT+CGG | + | tig0006790:7087-7106 | Msa1344080:intergenic | 35.0% |
| TCAAACCACCAAACTTGATT+TGG | - | tig0006790:7335-7354 | Msa1344080:CDS | 35.0% | |
| ! | TTGGAACTTAAAGGTTCTGA+TGG | - | tig0006790:7401-7420 | Msa1344080:CDS | 35.0% |
| TATTTATCCATTTCAGGGCT+TGG | - | tig0006790:7749-7768 | Msa1344080:intron | 35.0% | |
| GCTAAACTTCTATTGACACT+TGG | - | tig0006790:7780-7799 | Msa1344080:intron | 35.0% | |
| AAACTTCTATTGACACTTGG+AGG | - | tig0006790:7783-7802 | Msa1344080:intron | 35.0% | |
| AAAAAAATGCCACGGTTATG+AGG | + | tig0006790:7839-7858 | Msa1344080:intergenic | 35.0% | |
| AAGAGCAGAAAAAAATGCCA+CGG | + | tig0006790:7847-7866 | Msa1344080:intergenic | 35.0% | |
| ACAGAACACATTACATTAGC+TGG | + | tig0006790:7893-7912 | Msa1344080:intergenic | 35.0% | |
| !! | TCTTAGTTTGCCAATTGAGT+TGG | + | tig0006790:8054-8073 | Msa1344080:intergenic | 35.0% |
| ! | TTTTTCTGTTTGCGTCATGT+TGG | - | tig0006790:8439-8458 | Msa1344080:intron | 35.0% |
| TGAAGAATGAATGAGGATTG+AGG | + | tig0006790:8490-8509 | Msa1344080:intergenic | 35.0% | |
| CTCAATGTGAAGAATGAATG+AGG | + | tig0006790:8497-8516 | Msa1344080:intergenic | 35.0% | |
| !! | CTTGTATGAAATAGTGGACA+TGG | - | tig0006790:8527-8546 | Msa1344080:intron | 35.0% |
| ! | CATCTTCTAAGAGTGCATAA+GGG | + | tig0006790:8673-8692 | Msa1344080:intergenic | 35.0% |
| ! | TCATCTTCTAAGAGTGCATA+AGG | + | tig0006790:8674-8693 | Msa1344080:intergenic | 35.0% |
| ATGCACTCTTAGAAGATGAA+AGG | - | tig0006790:8675-8694 | Msa1344080:CDS | 35.0% | |
| TGAAAGGGAAAGTTGAGAGA+GGG | + | tig0006790:5729-5748 | Msa1278040:intergenic | 40.0% | |
| ! | TCTAGGTTTCACTTCTAGAG+GGG | + | tig0006790:6486-6505 | Msa1344080:intergenic | 40.0% |
| TTGAATCGCTCACACAAACA+CGG | - | tig0006790:6547-6566 | Msa1344080:intron | 40.0% | |
| ATTTGAATGTGGCCATGTGT+TGG | - | tig0006790:6618-6637 | Msa1344080:CDS | 40.0% | |
| ! | TTTCAGATGGAAGGTGTGTT+CGG | + | tig0006790:6681-6700 | Msa1344080:intergenic | 40.0% |
| ! | ACACCTTCCATCTGAAATGT+TGG | - | tig0006790:6684-6703 | Msa1344080:intron | 40.0% |
| TGTAGCACCAACATTTCAGA+TGG | + | tig0006790:6694-6713 | Msa1344080:intergenic | 40.0% | |
| !! | GAAATGTTGGTGCTACATGT+AGG | - | tig0006790:6697-6716 | Msa1344080:intron | 40.0% |
| TTGAAGGAATTGAAGAGGAG+AGG | - | tig0006790:6970-6989 | Msa1344080:intron | 40.0% | |
| ATCCTCAAGCAATGATGTAG+GGG | + | tig0006790:7001-7020 | Msa1344080:intergenic | 40.0% | |
| CTCTTCATCAACTCCATAGT+TGG | + | tig0006790:7034-7053 | Msa1344080:intergenic | 40.0% | |
| !! | CAACTATGGAGTTGATGAAG+AGG | - | tig0006790:7032-7051 | Msa1344080:intron | 40.0% |
| CGTCTGTGAATGAAGAAGAT+AGG | - | tig0006790:7055-7074 | Msa1344080:intron | 40.0% | |
| AGTGTCAACCAATGTTGAGA+GGG | - | tig0006790:7098-7117 | Msa1344080:intron | 40.0% | |
| GCATTGTTTGTTCTGCTCTA+AGG | - | tig0006790:7259-7278 | Msa1344080:intron | 40.0% | |
| AACAGCCAAATCAAGTTTGG+TGG | + | tig0006790:7343-7362 | Msa1344080:intergenic | 40.0% | |
| ATGAGAATGGAGTTCTTCAG+CGG | + | tig0006790:7498-7517 | Msa1344080:intergenic | 40.0% | |
| TACAGCTTACATGCTTCCTA+TGG | - | tig0006790:7704-7723 | Msa1344080:intron | 40.0% | |
| !! | TGATTTCTGGTGACTACCAT+AGG | + | tig0006790:7723-7742 | Msa1344080:intergenic | 40.0% |
| ! | GTCAATAGAAGTTTAGCTCG+AGG | + | tig0006790:7777-7796 | Msa1344080:intergenic | 40.0% |
| ACTTGGAGGAACATTCTTCT+TGG | - | tig0006790:7797-7816 | Msa1344080:intron | 40.0% | |
| GGAACATTCTTCTTGGCATT+TGG | - | tig0006790:7804-7823 | Msa1344080:intron | 40.0% | |
| TACTTAACACGCAAACGGTA+CGG | + | tig0006790:7923-7942 | Msa1344080:intergenic | 40.0% | |
| CAGAACCTAACCAACTCAAT+TGG | - | tig0006790:8041-8060 | Msa1344080:intron | 40.0% | |
| !! | GTTTGCCAATTGAGTTGGTT+AGG | + | tig0006790:8049-8068 | Msa1344080:intergenic | 40.0% |
| TTTGTCTCCCATCTATCCTA+TGG | - | tig0006790:8323-8342 | Msa1344080:intron | 40.0% | |
| ACTATCACCTCCACAATATG+TGG | - | tig0006790:8646-8665 | Msa1344080:CDS | 40.0% | |
| GTGAAAGGGAAAGTTGAGAG+AGG | + | tig0006790:5730-5749 | Msa1278040:intergenic | 45.0% | |
| TCAACACTTCCAAGTCTTCC+AGG | - | tig0006790:5834-5853 | Msa1344080:intron | 45.0% | |
| CAACACTTCCAAGTCTTCCA+GGG | - | tig0006790:5835-5854 | Msa1344080:intron | 45.0% | |
| AGAACTACTACAACAGACCC+TGG | + | tig0006790:5855-5874 | Msa1344080:intergenic | 45.0% | |
| GCACCAACATTTCAGATGGA+AGG | + | tig0006790:6690-6709 | Msa1344080:intergenic | 45.0% | |
| CAGTGTCAACCAATGTTGAG+AGG | - | tig0006790:7097-7116 | Msa1344080:intron | 45.0% | |
| GTGTCAACCAATGTTGAGAG+GGG | - | tig0006790:7099-7118 | Msa1344080:intron | 45.0% | |
| GTCTAGAGAATCAGAGGGAA+CGG | - | tig0006790:7121-7140 | Msa1344080:intron | 45.0% | |
| TAAGGGTCCACATATTGTGG+AGG | + | tig0006790:8656-8675 | Msa1344080:intergenic | 45.0% | |
| GCATAAGGGTCCACATATTG+TGG | + | tig0006790:8659-8678 | Msa1344080:intergenic | 45.0% | |
| GGATATCTCAGATAGCTCCT+CGG | - | tig0006790:8696-8715 | Msa1344080:CDS | 45.0% | |
| !!! | TTTTTTATATATATTATTGA+AGG | + | tig0006790:7197-7216 | Msa1344080:intergenic | 5.0% |
| AGGGAAAGTTGAGAGAGGGT+TGG | + | tig0006790:5725-5744 | Msa1278040:intergenic | 50.0% | |
| ACAACAGACCCTGGAAGACT+TGG | + | tig0006790:5846-5865 | Msa1344080:intergenic | 50.0% | |
| AGCGGTGTGAAGCCATCAAA+AGG | + | tig0006790:6904-6923 | Msa1344080:intergenic | 50.0% | |
| ATTCTCAGGAGAAGAGCCTC+CGG | - | tig0006790:6936-6955 | Msa1344080:intron | 50.0% | |
| GACCCCTACATCATTGCTTG+AGG | - | tig0006790:6996-7015 | Msa1344080:intron | 50.0% | |
| CTCTAGACCCCTCTCAACAT+TGG | + | tig0006790:7109-7128 | Msa1344080:intergenic | 50.0% | |
| AGAGGGGTCTAGAGAATCAG+AGG | - | tig0006790:7115-7134 | Msa1344080:intron | 50.0% | |
| GAGGGGTCTAGAGAATCAGA+GGG | - | tig0006790:7116-7135 | Msa1344080:intron | 50.0% | |
| GAATCAGAGGGAACGGTCTA+TGG | - | tig0006790:7128-7147 | Msa1344080:intron | 50.0% | |
| ! | TCTATGGCGCTGAACAGTGA+AGG | - | tig0006790:7144-7163 | Msa1344080:intron | 50.0% |
| GCTGAACAGTGAAGGTCTTG+AGG | - | tig0006790:7152-7171 | Msa1344080:intron | 50.0% | |
| ACCGTTGATCCTCATAACCG+TGG | - | tig0006790:7827-7846 | Msa1344080:intron | 50.0% | |
| GCCACGGTTATGAGGATCAA+CGG | + | tig0006790:7831-7850 | Msa1344080:intergenic | 50.0% | |
| !! | GGACCAAGTTTTGTCCACGA+CGG | - | tig0006790:8611-8630 | Msa1344080:CDS | 50.0% |
| CTTCCGTCGTGGACAAAACT+TGG | + | tig0006790:8617-8636 | Msa1344080:intergenic | 50.0% | |
| ! | CGAGGTACCAAGCCCTGAAA+TGG | + | tig0006790:7759-7778 | Msa1344080:intergenic | 55.0% |
| GTGACATCTTGCTTCCGTCG+TGG | + | tig0006790:8628-8647 | Msa1344080:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006790 | gene | 5707 | 8727 | 5707 | ID=Msa1344080;Name=Msa1344080 |
| tig0006790 | mRNA | 5707 | 8727 | 5707 | ID=Msa1344080-mRNA-1;Parent=Msa1344080;Name=Msa1344080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|217 |
| tig0006790 | exon | 8535 | 8727 | 8535 | ID=Msa1344080-mRNA-1:exon:4373;Parent=Msa1344080-mRNA-1 |
| tig0006790 | exon | 7261 | 7490 | 7261 | ID=Msa1344080-mRNA-1:exon:4372;Parent=Msa1344080-mRNA-1 |
| tig0006790 | exon | 6562 | 6669 | 6562 | ID=Msa1344080-mRNA-1:exon:4371;Parent=Msa1344080-mRNA-1 |
| tig0006790 | exon | 5707 | 5829 | 5707 | ID=Msa1344080-mRNA-1:exon:4370;Parent=Msa1344080-mRNA-1 |
| tig0006790 | CDS | 8535 | 8727 | 8535 | ID=Msa1344080-mRNA-1:cds;Parent=Msa1344080-mRNA-1 |
| tig0006790 | CDS | 7261 | 7490 | 7261 | ID=Msa1344080-mRNA-1:cds;Parent=Msa1344080-mRNA-1 |
| tig0006790 | CDS | 6562 | 6669 | 6562 | ID=Msa1344080-mRNA-1:cds;Parent=Msa1344080-mRNA-1 |
| tig0006790 | CDS | 5707 | 5829 | 5707 | ID=Msa1344080-mRNA-1:cds;Parent=Msa1344080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
