AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619320 MtrunA17_Chr8g0382991 90.955 199 12 2 39 236 1 194 4.90e-129 362
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619320 AT2G21970.1 55.385 195 81 3 39 230 1 192 1.27e-61 192

Find 86 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACAAACTGATTCTTTAA+TGG 0.149334 4_2:+70417261 Msa0619320:CDS
CGCGAATTTAGTATTGAATT+TGG 0.184846 4_2:+70418142 Msa0619320:three_prime_UTR
ATGTTTGTGTTCGCGCCTTC+TGG 0.200953 4_2:-70417403 None:intergenic
TTCTTTACGGGTCTTGATTA+TGG 0.222006 4_2:-70417482 None:intergenic
CTTGCATGTCTTCTTCTTTA+CGG 0.282945 4_2:-70417495 None:intergenic
TTGCATGTCTTCTTCTTTAC+GGG 0.300636 4_2:-70417494 None:intergenic
CTTAGAACTCTCGATATATT+CGG 0.302152 4_2:-70417554 None:intergenic
TTGTTTGGGTGCGGTTACTA+TGG 0.311981 4_2:+70417857 Msa0619320:CDS
GAATTCGGTGTTCAGGAAAA+TGG 0.321728 4_2:+70417803 Msa0619320:CDS
CCTTCTGGTTCAGTCGGTTT+GGG 0.324652 4_2:-70417388 None:intergenic
GCCTTCTGGTTCAGTCGGTT+TGG 0.330559 4_2:-70417389 None:intergenic
AGCAGTTGCGGAGAAGAAAT+TGG 0.350239 4_2:-70417117 None:intergenic
GAGGCGGGTGGGATTTGTTT+GGG 0.354432 4_2:+70417843 Msa0619320:CDS
ACTTGAGAAGTGGTAGTTGT+AGG 0.364804 4_2:-70417222 None:intergenic
GGAGGCGGGTGGGATTTGTT+TGG 0.366265 4_2:+70417842 Msa0619320:CDS
ATGTAACTGATTTCATTTAG+TGG 0.375551 4_2:+70418286 Msa0619320:three_prime_UTR
TGGTTCAGTCGGTTTGGGTT+TGG 0.403211 4_2:-70417383 None:intergenic
GAACGAGACGATGATACTTT+TGG 0.405757 4_2:-70417322 None:intergenic
GGAGTTGGTGACGGGGAATT+CGG 0.411121 4_2:+70417788 Msa0619320:CDS
CTTGAGAAGTGGTAGTTGTA+GGG 0.421678 4_2:-70417221 None:intergenic
TTCAGGAAAATGGATATTGC+AGG 0.423134 4_2:+70417813 Msa0619320:CDS
TGACGGGGAATTCGGTGTTC+AGG 0.428337 4_2:+70417796 Msa0619320:CDS
AATGAACGAACGAACGTTGA+AGG 0.431669 4_2:-70417190 None:intergenic
ATCAATTAGCGAATCAATGA+AGG 0.432023 4_2:-70417949 None:intergenic
CGGAGATGATTTCGAAATCC+TGG 0.437279 4_2:-70417582 None:intergenic
CTATGGCGGCAATGTTTGCT+TGG 0.440446 4_2:+70417874 Msa0619320:CDS
GTGACGGTGGAGTTGGTGAC+GGG 0.448839 4_2:+70417780 Msa0619320:CDS
TTCATTATTCAAATTTAAAG+TGG 0.456338 4_2:+70418250 Msa0619320:three_prime_UTR
CTAATTGATCAAATCGTTGA+CGG 0.458559 4_2:+70417963 Msa0619320:CDS
GTCTTGATTATGGCGCCGAC+TGG 0.478139 4_2:-70417472 None:intergenic
CGTTCCCGCCCCAGAAAACC+TGG 0.481238 4_2:+70417340 Msa0619320:CDS
TGTTACCATGGCGAGGCGGC+CGG 0.483455 4_2:-70417602 None:intergenic
CCGCCCCAGAAAACCTGGTC+CGG 0.484254 4_2:+70417345 Msa0619320:CDS
AAGAATCAGTTTGTTTGTGA+GGG 0.497960 4_2:-70417255 None:intergenic
TTGGTGACGGAAAATTGAAC+CGG 0.499068 4_2:-70417364 None:intergenic
AGTCGGTTTGGGTTTGGTGA+CGG 0.503663 4_2:-70417377 None:intergenic
GATTATGGCGCCGACTGGAT+CGG 0.505400 4_2:-70417467 None:intergenic
AATGGATATTGCAGGGATAA+CGG 0.508574 4_2:+70417821 Msa0619320:CDS
AAAGTTTGAGACTTGAGAAG+TGG 0.510886 4_2:-70417232 None:intergenic
TTCGGAAAGAGTGGCGAAGA+AGG 0.517357 4_2:-70417536 None:intergenic
AAAGAATCAGTTTGTTTGTG+AGG 0.521674 4_2:-70417256 None:intergenic
TTCGCGCCTTCTGGTTCAGT+CGG 0.523523 4_2:-70417394 None:intergenic
TATTGCAGGGATAACGGAGG+CGG 0.525078 4_2:+70417827 Msa0619320:CDS
ACGGAAAATTGAACCGGACC+AGG 0.525085 4_2:-70417358 None:intergenic
GCAGATGGTGTTTGCAGCGA+CGG 0.525390 4_2:+70417758 Msa0619320:intron
ATGTTCATAGATTGTAAGAT+GGG 0.530332 4_2:+70418187 Msa0619320:three_prime_UTR
TGATTCATCATGGTTGGATG+AGG 0.536622 4_2:+70418017 Msa0619320:exon
GAACTCTGATTCATCATGGT+TGG 0.544947 4_2:+70418011 Msa0619320:exon
TTTGGGTGCGGTTACTATGG+CGG 0.548728 4_2:+70417860 Msa0619320:CDS
CTATGCACTCTCAGATCATA+CGG 0.549836 4_2:+70417442 Msa0619320:CDS
GGGTGGGATTTGTTTGGGTG+CGG 0.551031 4_2:+70417848 Msa0619320:CDS
CAGGGATAACGGAGGCGGGT+GGG 0.551178 4_2:+70417832 Msa0619320:CDS
GCAGGGATAACGGAGGCGGG+TGG 0.556957 4_2:+70417831 Msa0619320:CDS
CGAGAGTTCTAAGAAAAGCC+AGG 0.559263 4_2:+70417564 Msa0619320:CDS
GGTGACGGTGGAGTTGGTGA+CGG 0.559321 4_2:+70417779 Msa0619320:CDS
GTGTGACTAACTGCGAGCTC+CGG 0.567817 4_2:+70417296 Msa0619320:CDS
ATTGCAGGGATAACGGAGGC+GGG 0.570947 4_2:+70417828 Msa0619320:CDS
CATCTCCGGCCGCCTCGCCA+TGG 0.570988 4_2:+70417597 Msa0619320:CDS
CATGTTCATAGATTGTAAGA+TGG 0.573227 4_2:+70418186 Msa0619320:three_prime_UTR
TGACGGTGGAGTTGGTGACG+GGG 0.573283 4_2:+70417781 Msa0619320:CDS
ACAATCTATGAACATGGTCA+AGG 0.574109 4_2:-70418179 None:intergenic
CAGGATTTCGAAATCATCTC+CGG 0.574628 4_2:+70417583 Msa0619320:CDS
TAATAACGAGTAAGCAGTTG+CGG 0.582455 4_2:-70417129 None:intergenic
ATTGTAAGATGGGTGGTTAG+CGG 0.585816 4_2:+70418197 Msa0619320:three_prime_UTR
AGCGACGGTGACGGTGGAGT+TGG 0.587633 4_2:+70417773 Msa0619320:CDS
CTCGATATATTCGGAAAGAG+TGG 0.596447 4_2:-70417545 None:intergenic
TGTGAAGATTCGATCCACTC+TGG 0.602920 4_2:-70417913 None:intergenic
CAATCTATGAACATGGTCAA+GGG 0.603384 4_2:-70418178 None:intergenic
GGGTGAACTCTGATTCATCA+TGG 0.604622 4_2:+70418007 Msa0619320:exon
TTCATAGATTGTAAGATGGG+TGG 0.607672 4_2:+70418190 Msa0619320:three_prime_UTR
CATCTTACAATCTATGAACA+TGG 0.615353 4_2:-70418185 None:intergenic
GAAGAAGGAGGACACGTCAT+CGG 0.616933 4_2:-70417521 None:intergenic
GGAAAGAGTGGCGAAGAAGG+AGG 0.623174 4_2:-70417533 None:intergenic
GGTGTTTGCAGCGACGGTGA+CGG 0.625726 4_2:+70417764 Msa0619320:CDS
CTCAAGTGCTCGTACCAGAG+TGG 0.631041 4_2:+70417899 Msa0619320:CDS
TTGTTCTATGATGATAGCGA+GGG 0.632266 4_2:+70417987 Msa0619320:CDS
TTTGTTCTATGATGATAGCG+AGG 0.632796 4_2:+70417986 Msa0619320:CDS
TCAGGAAAATGGATATTGCA+GGG 0.643208 4_2:+70417814 Msa0619320:CDS
CAAACATCGTTCTACAACCG+CGG 0.645183 4_2:+70417419 Msa0619320:CDS
CCCAAACCGACTGAACCAGA+AGG 0.654325 4_2:+70417388 Msa0619320:CDS
GTTTGCAGCGACGGTGACGG+TGG 0.675734 4_2:+70417767 Msa0619320:CDS
ATTGGATACGTAGCACACAC+AGG 0.687544 4_2:-70417099 None:intergenic
AGGTATCAGACAAAACTATG+TGG 0.693305 4_2:-70417079 None:intergenic
GGATATTGCAGGGATAACGG+AGG 0.721943 4_2:+70417824 Msa0619320:CDS
GATCTGAGAGTGCATAGCCG+CGG 0.723172 4_2:-70417436 None:intergenic
TCATACGGTTCCGATCCAGT+CGG 0.759723 4_2:+70417457 Msa0619320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATACTATGACTTTTTT+TGG + chr4_2:70417157-70417176 Msa0619320:exon 15.0%
!! TTCATTATTCAAATTTAAAG+TGG + chr4_2:70418250-70418269 Msa0619320:three_prime_UTR 15.0%
!!! ATTAATACTATGACTTTTTT+TGG + chr4_2:70417157-70417176 Msa0619320:exon 15.0%
!! TTCATTATTCAAATTTAAAG+TGG + chr4_2:70418250-70418269 Msa0619320:three_prime_UTR 15.0%
!! CATTATTCTCAGTTTATTAT+TGG + chr4_2:70417665-70417684 Msa0619320:intron 20.0%
!! TTCCTCTAATATAGTATATA+TGG - chr4_2:70417708-70417727 None:intergenic 20.0%
!! CATTATTCTCAGTTTATTAT+TGG + chr4_2:70417665-70417684 Msa0619320:intron 20.0%
!! TTCCTCTAATATAGTATATA+TGG - chr4_2:70417708-70417727 None:intergenic 20.0%
!! CAAACAAACTGATTCTTTAA+TGG + chr4_2:70417261-70417280 Msa0619320:CDS 25.0%
! AATATAGTATATATGGACAC+CGG - chr4_2:70417701-70417720 None:intergenic 25.0%
! GTCCATATATACTATATTAG+AGG + chr4_2:70417703-70417722 Msa0619320:intron 25.0%
!!! ATTGTTGCTTTTTATTGATG+TGG + chr4_2:70417731-70417750 Msa0619320:intron 25.0%
! ATGTTCATAGATTGTAAGAT+GGG + chr4_2:70418187-70418206 Msa0619320:three_prime_UTR 25.0%
!! ATGTAACTGATTTCATTTAG+TGG + chr4_2:70418286-70418305 Msa0619320:three_prime_UTR 25.0%
!! CAAACAAACTGATTCTTTAA+TGG + chr4_2:70417261-70417280 Msa0619320:CDS 25.0%
! AATATAGTATATATGGACAC+CGG - chr4_2:70417701-70417720 None:intergenic 25.0%
! GTCCATATATACTATATTAG+AGG + chr4_2:70417703-70417722 Msa0619320:intron 25.0%
!!! ATTGTTGCTTTTTATTGATG+TGG + chr4_2:70417731-70417750 Msa0619320:intron 25.0%
! ATGTTCATAGATTGTAAGAT+GGG + chr4_2:70418187-70418206 Msa0619320:three_prime_UTR 25.0%
!! ATGTAACTGATTTCATTTAG+TGG + chr4_2:70418286-70418305 Msa0619320:three_prime_UTR 25.0%
! AAGAATCAGTTTGTTTGTGA+GGG - chr4_2:70417258-70417277 None:intergenic 30.0%
! AAAGAATCAGTTTGTTTGTG+AGG - chr4_2:70417259-70417278 None:intergenic 30.0%
CTTAGAACTCTCGATATATT+CGG - chr4_2:70417557-70417576 None:intergenic 30.0%
ATCAATTAGCGAATCAATGA+AGG - chr4_2:70417952-70417971 None:intergenic 30.0%
CTAATTGATCAAATCGTTGA+CGG + chr4_2:70417963-70417982 Msa0619320:CDS 30.0%
! CGCGAATTTAGTATTGAATT+TGG + chr4_2:70418142-70418161 Msa0619320:three_prime_UTR 30.0%
CATCTTACAATCTATGAACA+TGG - chr4_2:70418188-70418207 None:intergenic 30.0%
CATGTTCATAGATTGTAAGA+TGG + chr4_2:70418186-70418205 Msa0619320:three_prime_UTR 30.0%
! AAGAATCAGTTTGTTTGTGA+GGG - chr4_2:70417258-70417277 None:intergenic 30.0%
! AAAGAATCAGTTTGTTTGTG+AGG - chr4_2:70417259-70417278 None:intergenic 30.0%
CTTAGAACTCTCGATATATT+CGG - chr4_2:70417557-70417576 None:intergenic 30.0%
ATCAATTAGCGAATCAATGA+AGG - chr4_2:70417952-70417971 None:intergenic 30.0%
CTAATTGATCAAATCGTTGA+CGG + chr4_2:70417963-70417982 Msa0619320:CDS 30.0%
! CGCGAATTTAGTATTGAATT+TGG + chr4_2:70418142-70418161 Msa0619320:three_prime_UTR 30.0%
CATCTTACAATCTATGAACA+TGG - chr4_2:70418188-70418207 None:intergenic 30.0%
CATGTTCATAGATTGTAAGA+TGG + chr4_2:70418186-70418205 Msa0619320:three_prime_UTR 30.0%
AGGTATCAGACAAAACTATG+TGG - chr4_2:70417082-70417101 None:intergenic 35.0%
TAATAACGAGTAAGCAGTTG+CGG - chr4_2:70417132-70417151 None:intergenic 35.0%
! AAAGTTTGAGACTTGAGAAG+TGG - chr4_2:70417235-70417254 None:intergenic 35.0%
TTCTTTACGGGTCTTGATTA+TGG - chr4_2:70417485-70417504 None:intergenic 35.0%
TTGCATGTCTTCTTCTTTAC+GGG - chr4_2:70417497-70417516 None:intergenic 35.0%
CTTGCATGTCTTCTTCTTTA+CGG - chr4_2:70417498-70417517 None:intergenic 35.0%
GATCACATGTGTTAGTGTTA+GGG - chr4_2:70417631-70417650 None:intergenic 35.0%
TGATCACATGTGTTAGTGTT+AGG - chr4_2:70417632-70417651 None:intergenic 35.0%
!!! GTTGCTTTTTATTGATGTGG+TGG + chr4_2:70417734-70417753 Msa0619320:intron 35.0%
TTCAGGAAAATGGATATTGC+AGG + chr4_2:70417813-70417832 Msa0619320:CDS 35.0%
TCAGGAAAATGGATATTGCA+GGG + chr4_2:70417814-70417833 Msa0619320:CDS 35.0%
AATGGATATTGCAGGGATAA+CGG + chr4_2:70417821-70417840 Msa0619320:CDS 35.0%
! TTTGTTCTATGATGATAGCG+AGG + chr4_2:70417986-70418005 Msa0619320:CDS 35.0%
! TTGTTCTATGATGATAGCGA+GGG + chr4_2:70417987-70418006 Msa0619320:CDS 35.0%
CAATCTATGAACATGGTCAA+GGG - chr4_2:70418181-70418200 None:intergenic 35.0%
ACAATCTATGAACATGGTCA+AGG - chr4_2:70418182-70418201 None:intergenic 35.0%
TTCATAGATTGTAAGATGGG+TGG + chr4_2:70418190-70418209 Msa0619320:three_prime_UTR 35.0%
AGGTATCAGACAAAACTATG+TGG - chr4_2:70417082-70417101 None:intergenic 35.0%
TAATAACGAGTAAGCAGTTG+CGG - chr4_2:70417132-70417151 None:intergenic 35.0%
! AAAGTTTGAGACTTGAGAAG+TGG - chr4_2:70417235-70417254 None:intergenic 35.0%
TTCTTTACGGGTCTTGATTA+TGG - chr4_2:70417485-70417504 None:intergenic 35.0%
TTGCATGTCTTCTTCTTTAC+GGG - chr4_2:70417497-70417516 None:intergenic 35.0%
CTTGCATGTCTTCTTCTTTA+CGG - chr4_2:70417498-70417517 None:intergenic 35.0%
GATCACATGTGTTAGTGTTA+GGG - chr4_2:70417631-70417650 None:intergenic 35.0%
TGATCACATGTGTTAGTGTT+AGG - chr4_2:70417632-70417651 None:intergenic 35.0%
!!! GTTGCTTTTTATTGATGTGG+TGG + chr4_2:70417734-70417753 Msa0619320:intron 35.0%
TTCAGGAAAATGGATATTGC+AGG + chr4_2:70417813-70417832 Msa0619320:CDS 35.0%
TCAGGAAAATGGATATTGCA+GGG + chr4_2:70417814-70417833 Msa0619320:CDS 35.0%
AATGGATATTGCAGGGATAA+CGG + chr4_2:70417821-70417840 Msa0619320:CDS 35.0%
! TTTGTTCTATGATGATAGCG+AGG + chr4_2:70417986-70418005 Msa0619320:CDS 35.0%
! TTGTTCTATGATGATAGCGA+GGG + chr4_2:70417987-70418006 Msa0619320:CDS 35.0%
CAATCTATGAACATGGTCAA+GGG - chr4_2:70418181-70418200 None:intergenic 35.0%
ACAATCTATGAACATGGTCA+AGG - chr4_2:70418182-70418201 None:intergenic 35.0%
TTCATAGATTGTAAGATGGG+TGG + chr4_2:70418190-70418209 Msa0619320:three_prime_UTR 35.0%
AATGAACGAACGAACGTTGA+AGG - chr4_2:70417193-70417212 None:intergenic 40.0%
CTTGAGAAGTGGTAGTTGTA+GGG - chr4_2:70417224-70417243 None:intergenic 40.0%
ACTTGAGAAGTGGTAGTTGT+AGG - chr4_2:70417225-70417244 None:intergenic 40.0%
! GAACGAGACGATGATACTTT+TGG - chr4_2:70417325-70417344 None:intergenic 40.0%
!! TTGGTGACGGAAAATTGAAC+CGG - chr4_2:70417367-70417386 None:intergenic 40.0%
CTATGCACTCTCAGATCATA+CGG + chr4_2:70417442-70417461 Msa0619320:CDS 40.0%
CTCGATATATTCGGAAAGAG+TGG - chr4_2:70417548-70417567 None:intergenic 40.0%
CAGGATTTCGAAATCATCTC+CGG + chr4_2:70417583-70417602 Msa0619320:CDS 40.0%
!!! GTGTTAGGGTTTTGTTACCA+TGG - chr4_2:70417617-70417636 None:intergenic 40.0%
!! TATTATTGGTGTCAACGTGC+CGG + chr4_2:70417679-70417698 Msa0619320:intron 40.0%
!! GAATTCGGTGTTCAGGAAAA+TGG + chr4_2:70417803-70417822 Msa0619320:CDS 40.0%
GAACTCTGATTCATCATGGT+TGG + chr4_2:70418011-70418030 Msa0619320:exon 40.0%
TGATTCATCATGGTTGGATG+AGG + chr4_2:70418017-70418036 Msa0619320:exon 40.0%
ATTGTAAGATGGGTGGTTAG+CGG + chr4_2:70418197-70418216 Msa0619320:three_prime_UTR 40.0%
AATGAACGAACGAACGTTGA+AGG - chr4_2:70417193-70417212 None:intergenic 40.0%
CTTGAGAAGTGGTAGTTGTA+GGG - chr4_2:70417224-70417243 None:intergenic 40.0%
ACTTGAGAAGTGGTAGTTGT+AGG - chr4_2:70417225-70417244 None:intergenic 40.0%
! GAACGAGACGATGATACTTT+TGG - chr4_2:70417325-70417344 None:intergenic 40.0%
!! TTGGTGACGGAAAATTGAAC+CGG - chr4_2:70417367-70417386 None:intergenic 40.0%
CTATGCACTCTCAGATCATA+CGG + chr4_2:70417442-70417461 Msa0619320:CDS 40.0%
CTCGATATATTCGGAAAGAG+TGG - chr4_2:70417548-70417567 None:intergenic 40.0%
CAGGATTTCGAAATCATCTC+CGG + chr4_2:70417583-70417602 Msa0619320:CDS 40.0%
!!! GTGTTAGGGTTTTGTTACCA+TGG - chr4_2:70417617-70417636 None:intergenic 40.0%
!! TATTATTGGTGTCAACGTGC+CGG + chr4_2:70417679-70417698 Msa0619320:intron 40.0%
!! GAATTCGGTGTTCAGGAAAA+TGG + chr4_2:70417803-70417822 Msa0619320:CDS 40.0%
GAACTCTGATTCATCATGGT+TGG + chr4_2:70418011-70418030 Msa0619320:exon 40.0%
TGATTCATCATGGTTGGATG+AGG + chr4_2:70418017-70418036 Msa0619320:exon 40.0%
ATTGTAAGATGGGTGGTTAG+CGG + chr4_2:70418197-70418216 Msa0619320:three_prime_UTR 40.0%
ATTGGATACGTAGCACACAC+AGG - chr4_2:70417102-70417121 None:intergenic 45.0%
AGCAGTTGCGGAGAAGAAAT+TGG - chr4_2:70417120-70417139 None:intergenic 45.0%
!! ACGATGATACTTTTGGTGGC+CGG - chr4_2:70417318-70417337 None:intergenic 45.0%
! CGAGACGATGATACTTTTGG+TGG - chr4_2:70417322-70417341 None:intergenic 45.0%
CAAACATCGTTCTACAACCG+CGG + chr4_2:70417419-70417438 Msa0619320:CDS 45.0%
!! CGAGAGTTCTAAGAAAAGCC+AGG + chr4_2:70417564-70417583 Msa0619320:CDS 45.0%
CGGAGATGATTTCGAAATCC+TGG - chr4_2:70417585-70417604 None:intergenic 45.0%
! TATTGATGTGGTGGTGCAGA+TGG + chr4_2:70417743-70417762 Msa0619320:intron 45.0%
TTGTTTGGGTGCGGTTACTA+TGG + chr4_2:70417857-70417876 Msa0619320:CDS 45.0%
TGTGAAGATTCGATCCACTC+TGG - chr4_2:70417916-70417935 None:intergenic 45.0%
GGGTGAACTCTGATTCATCA+TGG + chr4_2:70418007-70418026 Msa0619320:exon 45.0%
ATTGGATACGTAGCACACAC+AGG - chr4_2:70417102-70417121 None:intergenic 45.0%
AGCAGTTGCGGAGAAGAAAT+TGG - chr4_2:70417120-70417139 None:intergenic 45.0%
!! ACGATGATACTTTTGGTGGC+CGG - chr4_2:70417318-70417337 None:intergenic 45.0%
! CGAGACGATGATACTTTTGG+TGG - chr4_2:70417322-70417341 None:intergenic 45.0%
CAAACATCGTTCTACAACCG+CGG + chr4_2:70417419-70417438 Msa0619320:CDS 45.0%
!! CGAGAGTTCTAAGAAAAGCC+AGG + chr4_2:70417564-70417583 Msa0619320:CDS 45.0%
CGGAGATGATTTCGAAATCC+TGG - chr4_2:70417585-70417604 None:intergenic 45.0%
! TATTGATGTGGTGGTGCAGA+TGG + chr4_2:70417743-70417762 Msa0619320:intron 45.0%
TTGTTTGGGTGCGGTTACTA+TGG + chr4_2:70417857-70417876 Msa0619320:CDS 45.0%
TGTGAAGATTCGATCCACTC+TGG - chr4_2:70417916-70417935 None:intergenic 45.0%
GGGTGAACTCTGATTCATCA+TGG + chr4_2:70418007-70418026 Msa0619320:exon 45.0%
! TGAACCGGACCAGGTTTTCT+GGG - chr4_2:70417352-70417371 None:intergenic 50.0%
! TTGAACCGGACCAGGTTTTC+TGG - chr4_2:70417353-70417372 None:intergenic 50.0%
ACGGAAAATTGAACCGGACC+AGG - chr4_2:70417361-70417380 None:intergenic 50.0%
!! AGTCGGTTTGGGTTTGGTGA+CGG - chr4_2:70417380-70417399 None:intergenic 50.0%
!! TGGTTCAGTCGGTTTGGGTT+TGG - chr4_2:70417386-70417405 None:intergenic 50.0%
!! CCTTCTGGTTCAGTCGGTTT+GGG - chr4_2:70417391-70417410 None:intergenic 50.0%
ATGTTTGTGTTCGCGCCTTC+TGG - chr4_2:70417406-70417425 None:intergenic 50.0%
TCATACGGTTCCGATCCAGT+CGG + chr4_2:70417457-70417476 Msa0619320:CDS 50.0%
GAAGAAGGAGGACACGTCAT+CGG - chr4_2:70417524-70417543 None:intergenic 50.0%
TTCGGAAAGAGTGGCGAAGA+AGG - chr4_2:70417539-70417558 None:intergenic 50.0%
!! GTTTTGTTACCATGGCGAGG+CGG - chr4_2:70417609-70417628 None:intergenic 50.0%
!!! AGGGTTTTGTTACCATGGCG+AGG - chr4_2:70417612-70417631 None:intergenic 50.0%
! GGATATTGCAGGGATAACGG+AGG + chr4_2:70417824-70417843 Msa0619320:CDS 50.0%
!! TATTGCAGGGATAACGGAGG+CGG + chr4_2:70417827-70417846 Msa0619320:CDS 50.0%
TTTGGGTGCGGTTACTATGG+CGG + chr4_2:70417860-70417879 Msa0619320:CDS 50.0%
CTATGGCGGCAATGTTTGCT+TGG + chr4_2:70417874-70417893 Msa0619320:CDS 50.0%
! TGAACCGGACCAGGTTTTCT+GGG - chr4_2:70417352-70417371 None:intergenic 50.0%
! TTGAACCGGACCAGGTTTTC+TGG - chr4_2:70417353-70417372 None:intergenic 50.0%
ACGGAAAATTGAACCGGACC+AGG - chr4_2:70417361-70417380 None:intergenic 50.0%
!! AGTCGGTTTGGGTTTGGTGA+CGG - chr4_2:70417380-70417399 None:intergenic 50.0%
!! TGGTTCAGTCGGTTTGGGTT+TGG - chr4_2:70417386-70417405 None:intergenic 50.0%
!! CCTTCTGGTTCAGTCGGTTT+GGG - chr4_2:70417391-70417410 None:intergenic 50.0%
ATGTTTGTGTTCGCGCCTTC+TGG - chr4_2:70417406-70417425 None:intergenic 50.0%
TCATACGGTTCCGATCCAGT+CGG + chr4_2:70417457-70417476 Msa0619320:CDS 50.0%
GAAGAAGGAGGACACGTCAT+CGG - chr4_2:70417524-70417543 None:intergenic 50.0%
TTCGGAAAGAGTGGCGAAGA+AGG - chr4_2:70417539-70417558 None:intergenic 50.0%
!! GTTTTGTTACCATGGCGAGG+CGG - chr4_2:70417609-70417628 None:intergenic 50.0%
!!! AGGGTTTTGTTACCATGGCG+AGG - chr4_2:70417612-70417631 None:intergenic 50.0%
! GGATATTGCAGGGATAACGG+AGG + chr4_2:70417824-70417843 Msa0619320:CDS 50.0%
!! TATTGCAGGGATAACGGAGG+CGG + chr4_2:70417827-70417846 Msa0619320:CDS 50.0%
TTTGGGTGCGGTTACTATGG+CGG + chr4_2:70417860-70417879 Msa0619320:CDS 50.0%
CTATGGCGGCAATGTTTGCT+TGG + chr4_2:70417874-70417893 Msa0619320:CDS 50.0%
GTGTGACTAACTGCGAGCTC+CGG + chr4_2:70417296-70417315 Msa0619320:CDS 55.0%
! GAACCGGACCAGGTTTTCTG+GGG - chr4_2:70417351-70417370 None:intergenic 55.0%
CCCAAACCGACTGAACCAGA+AGG + chr4_2:70417388-70417407 Msa0619320:CDS 55.0%
!! GCCTTCTGGTTCAGTCGGTT+TGG - chr4_2:70417392-70417411 None:intergenic 55.0%
!! TTCGCGCCTTCTGGTTCAGT+CGG - chr4_2:70417397-70417416 None:intergenic 55.0%
! GATCTGAGAGTGCATAGCCG+CGG - chr4_2:70417439-70417458 None:intergenic 55.0%
!! GATTATGGCGCCGACTGGAT+CGG - chr4_2:70417470-70417489 None:intergenic 55.0%
!! GTCTTGATTATGGCGCCGAC+TGG - chr4_2:70417475-70417494 None:intergenic 55.0%
GGAAAGAGTGGCGAAGAAGG+AGG - chr4_2:70417536-70417555 None:intergenic 55.0%
GCAGATGGTGTTTGCAGCGA+CGG + chr4_2:70417758-70417777 Msa0619320:intron 55.0%
!! GGAGTTGGTGACGGGGAATT+CGG + chr4_2:70417788-70417807 Msa0619320:CDS 55.0%
!! TGACGGGGAATTCGGTGTTC+AGG + chr4_2:70417796-70417815 Msa0619320:CDS 55.0%
!! ATTGCAGGGATAACGGAGGC+GGG + chr4_2:70417828-70417847 Msa0619320:CDS 55.0%
! GAGGCGGGTGGGATTTGTTT+GGG + chr4_2:70417843-70417862 Msa0619320:CDS 55.0%
! GGGTGGGATTTGTTTGGGTG+CGG + chr4_2:70417848-70417867 Msa0619320:CDS 55.0%
CTCAAGTGCTCGTACCAGAG+TGG + chr4_2:70417899-70417918 Msa0619320:CDS 55.0%
GTGTGACTAACTGCGAGCTC+CGG + chr4_2:70417296-70417315 Msa0619320:CDS 55.0%
! GAACCGGACCAGGTTTTCTG+GGG - chr4_2:70417351-70417370 None:intergenic 55.0%
CCCAAACCGACTGAACCAGA+AGG + chr4_2:70417388-70417407 Msa0619320:CDS 55.0%
!! GCCTTCTGGTTCAGTCGGTT+TGG - chr4_2:70417392-70417411 None:intergenic 55.0%
!! TTCGCGCCTTCTGGTTCAGT+CGG - chr4_2:70417397-70417416 None:intergenic 55.0%
! GATCTGAGAGTGCATAGCCG+CGG - chr4_2:70417439-70417458 None:intergenic 55.0%
!! GATTATGGCGCCGACTGGAT+CGG - chr4_2:70417470-70417489 None:intergenic 55.0%
!! GTCTTGATTATGGCGCCGAC+TGG - chr4_2:70417475-70417494 None:intergenic 55.0%
GGAAAGAGTGGCGAAGAAGG+AGG - chr4_2:70417536-70417555 None:intergenic 55.0%
GCAGATGGTGTTTGCAGCGA+CGG + chr4_2:70417758-70417777 Msa0619320:intron 55.0%
!! GGAGTTGGTGACGGGGAATT+CGG + chr4_2:70417788-70417807 Msa0619320:CDS 55.0%
!! TGACGGGGAATTCGGTGTTC+AGG + chr4_2:70417796-70417815 Msa0619320:CDS 55.0%
!! ATTGCAGGGATAACGGAGGC+GGG + chr4_2:70417828-70417847 Msa0619320:CDS 55.0%
! GAGGCGGGTGGGATTTGTTT+GGG + chr4_2:70417843-70417862 Msa0619320:CDS 55.0%
! GGGTGGGATTTGTTTGGGTG+CGG + chr4_2:70417848-70417867 Msa0619320:CDS 55.0%
CTCAAGTGCTCGTACCAGAG+TGG + chr4_2:70417899-70417918 Msa0619320:CDS 55.0%
GGTGTTTGCAGCGACGGTGA+CGG + chr4_2:70417764-70417783 Msa0619320:CDS 60.0%
!! GGTGACGGTGGAGTTGGTGA+CGG + chr4_2:70417779-70417798 Msa0619320:CDS 60.0%
!! GTGACGGTGGAGTTGGTGAC+GGG + chr4_2:70417780-70417799 Msa0619320:CDS 60.0%
!! TGACGGTGGAGTTGGTGACG+GGG + chr4_2:70417781-70417800 Msa0619320:CDS 60.0%
! GGAGGCGGGTGGGATTTGTT+TGG + chr4_2:70417842-70417861 Msa0619320:CDS 60.0%
GGTGTTTGCAGCGACGGTGA+CGG + chr4_2:70417764-70417783 Msa0619320:CDS 60.0%
!! GGTGACGGTGGAGTTGGTGA+CGG + chr4_2:70417779-70417798 Msa0619320:CDS 60.0%
!! GTGACGGTGGAGTTGGTGAC+GGG + chr4_2:70417780-70417799 Msa0619320:CDS 60.0%
!! TGACGGTGGAGTTGGTGACG+GGG + chr4_2:70417781-70417800 Msa0619320:CDS 60.0%
! GGAGGCGGGTGGGATTTGTT+TGG + chr4_2:70417842-70417861 Msa0619320:CDS 60.0%
CGTTCCCGCCCCAGAAAACC+TGG + chr4_2:70417340-70417359 Msa0619320:CDS 65.0%
!!! CGGACCAGGTTTTCTGGGGC+GGG - chr4_2:70417347-70417366 None:intergenic 65.0%
!! CCGGACCAGGTTTTCTGGGG+CGG - chr4_2:70417348-70417367 None:intergenic 65.0%
CCGCCCCAGAAAACCTGGTC+CGG + chr4_2:70417345-70417364 Msa0619320:CDS 65.0%
TGTTACCATGGCGAGGCGGC+CGG - chr4_2:70417605-70417624 None:intergenic 65.0%
! GTTTGCAGCGACGGTGACGG+TGG + chr4_2:70417767-70417786 Msa0619320:CDS 65.0%
! AGCGACGGTGACGGTGGAGT+TGG + chr4_2:70417773-70417792 Msa0619320:CDS 65.0%
!! CAGGGATAACGGAGGCGGGT+GGG + chr4_2:70417832-70417851 Msa0619320:CDS 65.0%
CGTTCCCGCCCCAGAAAACC+TGG + chr4_2:70417340-70417359 Msa0619320:CDS 65.0%
!!! CGGACCAGGTTTTCTGGGGC+GGG - chr4_2:70417347-70417366 None:intergenic 65.0%
!! CCGGACCAGGTTTTCTGGGG+CGG - chr4_2:70417348-70417367 None:intergenic 65.0%
CCGCCCCAGAAAACCTGGTC+CGG + chr4_2:70417345-70417364 Msa0619320:CDS 65.0%
TGTTACCATGGCGAGGCGGC+CGG - chr4_2:70417605-70417624 None:intergenic 65.0%
! GTTTGCAGCGACGGTGACGG+TGG + chr4_2:70417767-70417786 Msa0619320:CDS 65.0%
! AGCGACGGTGACGGTGGAGT+TGG + chr4_2:70417773-70417792 Msa0619320:CDS 65.0%
!! CAGGGATAACGGAGGCGGGT+GGG + chr4_2:70417832-70417851 Msa0619320:CDS 65.0%
!! GCAGGGATAACGGAGGCGGG+TGG + chr4_2:70417831-70417850 Msa0619320:CDS 70.0%
!! GCAGGGATAACGGAGGCGGG+TGG + chr4_2:70417831-70417850 Msa0619320:CDS 70.0%
CATCTCCGGCCGCCTCGCCA+TGG + chr4_2:70417597-70417616 Msa0619320:CDS 75.0%
CATCTCCGGCCGCCTCGCCA+TGG + chr4_2:70417597-70417616 Msa0619320:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70417073 70418335 70417073 ID=Msa0619320;Name=Msa0619320
chr4_2 mRNA 70417073 70418335 70417073 ID=Msa0619320-mRNA-1;Parent=Msa0619320;Name=Msa0619320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=93|1|1|1|1|1|2|316|236
chr4_2 exon 70417073 70417618 70417073 ID=Msa0619320-mRNA-1:exon:20520;Parent=Msa0619320-mRNA-1
chr4_2 exon 70417762 70418335 70417762 ID=Msa0619320-mRNA-1:exon:20521;Parent=Msa0619320-mRNA-1
chr4_2 five_prime_UTR 70417073 70417165 70417073 ID=Msa0619320-mRNA-1:five_prime_utr;Parent=Msa0619320-mRNA-1
chr4_2 CDS 70417166 70417618 70417166 ID=Msa0619320-mRNA-1:cds;Parent=Msa0619320-mRNA-1
chr4_2 CDS 70417762 70418019 70417762 ID=Msa0619320-mRNA-1:cds;Parent=Msa0619320-mRNA-1
chr4_2 three_prime_UTR 70418020 70418335 70418020 ID=Msa0619320-mRNA-1:three_prime_utr;Parent=Msa0619320-mRNA-1
Gene Sequence

>Msa0619320

ATGACTTTTTTTGGTAATATTCAACCTTCAACGTTCGTTCGTTCATTCATTCATTCCCTACAACTACCACTTCTCAAGTCTCAAACTTTCCCTCACAAACAAACTGATTCTTTAATGGCATCTGCAGCGCGTGTGACTAACTGCGAGCTCCGGCCACCAAAAGTATCATCGTCTCGTTCCCGCCCCAGAAAACCTGGTCCGGTTCAATTTTCCGTCACCAAACCCAAACCGACTGAACCAGAAGGCGCGAACACAAACATCGTTCTACAACCGCGGCTATGCACTCTCAGATCATACGGTTCCGATCCAGTCGGCGCCATAATCAAGACCCGTAAAGAAGAAGACATGCAAGTTACCGATGACGTGTCCTCCTTCTTCGCCACTCTTTCCGAATATATCGAGAGTTCTAAGAAAAGCCAGGATTTCGAAATCATCTCCGGCCGCCTCGCCATGATGGTGTTTGCAGCGACGGTGACGGTGGAGTTGGTGACGGGGAATTCGGTGTTCAGGAAAATGGATATTGCAGGGATAACGGAGGCGGGTGGGATTTGTTTGGGTGCGGTTACTATGGCGGCAATGTTTGCTTGGTTCTCAAGTGCTCGTACCAGAGTGGATCGAATCTTCACAGTCAGCTACAACTCCTTCATTGATTCGCTAATTGATCAAATCGTTGACGGTTTGTTCTATGATGATAGCGAGGGTGAACTCTGA

Protein sequence

>Msa0619320

MTFFGNIQPSTFVRSFIHSLQLPLLKSQTFPHKQTDSLMASAARVTNCELRPPKVSSSRSRPRKPGPVQFSVTKPKPTEPEGANTNIVLQPRLCTLRSYGSDPVGAIIKTRKEEDMQVTDDVSSFFATLSEYIESSKKSQDFEIISGRLAMMVFAATVTVELVTGNSVFRKMDIAGITEAGGICLGAVTMAAMFAWFSSARTRVDRIFTVSYNSFIDSLIDQIVDGLFYDDSEGEL*