Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0619320 | XP_039685180.1 | 90.955 | 199 | 12 | 2 | 39 | 236 | 1 | 194 | 5.32e-125 | 362 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0619320 | sp|Q9SJ02|STEP2_ARATH | 55.385 | 195 | 81 | 3 | 39 | 230 | 1 | 192 | 1.24e-60 | 192 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0034700 | Msa0619320 | 0.845442 | 4.051114e-59 | -8.615850e-47 |
Msa0044530 | Msa0619320 | 0.834522 | 2.854326e-56 | -8.615850e-47 |
Msa0044780 | Msa0619320 | 0.824723 | 6.917197e-54 | -8.615850e-47 |
Msa0045620 | Msa0619320 | -0.830271 | 3.226320e-55 | -8.615850e-47 |
Msa0056230 | Msa0619320 | 0.800891 | 1.164894e-48 | -8.615850e-47 |
Msa0063190 | Msa0619320 | -0.824121 | 9.582122e-54 | -8.615850e-47 |
Msa0077570 | Msa0619320 | 0.813847 | 2.080201e-51 | -8.615850e-47 |
Msa0089540 | Msa0619320 | -0.816036 | 6.800838e-52 | -8.615850e-47 |
Msa0091220 | Msa0619320 | 0.826501 | 2.620600e-54 | -8.615850e-47 |
Msa0091240 | Msa0619320 | 0.831912 | 1.275740e-55 | -8.615850e-47 |
Msa0093940 | Msa0619320 | 0.809717 | 1.647894e-50 | -8.615850e-47 |
Msa0100600 | Msa0619320 | -0.807669 | 4.515284e-50 | -8.615850e-47 |
Msa0100890 | Msa0619320 | -0.807364 | 5.239942e-50 | -8.615850e-47 |
Msa0108630 | Msa0619320 | -0.811666 | 6.245285e-51 | -8.615850e-47 |
Msa0605520 | Msa0619320 | -0.806133 | 9.536804e-50 | -8.615850e-47 |
Msa0612520 | Msa0619320 | -0.812964 | 3.251861e-51 | -8.615850e-47 |
Msa0619320 | Msa0623310 | -0.829039 | 6.434307e-55 | -8.615850e-47 |
Msa0619320 | Msa0660260 | -0.837316 | 5.585758e-57 | -8.615850e-47 |
Msa0619320 | Msa0661480 | -0.818333 | 2.070043e-52 | -8.615850e-47 |
Msa0619320 | Msa0663290 | -0.813874 | 2.052374e-51 | -8.615850e-47 |
Msa0619320 | Msa0664070 | -0.813280 | 2.772371e-51 | -8.615850e-47 |
Msa0619320 | Msa0685390 | 0.858188 | 9.780852e-63 | -8.615850e-47 |
Msa0619320 | Msa0685610 | -0.834142 | 3.555809e-56 | -8.615850e-47 |
Msa0619320 | Msa0688620 | -0.815409 | 9.384316e-52 | -8.615850e-47 |
Msa0619320 | Msa0704780 | 0.948862 | 4.052812e-107 | -8.615850e-47 |
Msa0619320 | Msa0708020 | -0.805685 | 1.184688e-49 | -8.615850e-47 |
Msa0619320 | Msa0719270 | -0.804659 | 1.943056e-49 | -8.615850e-47 |
Msa0619320 | Msa0726170 | 0.807832 | 4.168748e-50 | -8.615850e-47 |
Msa0619320 | Msa0749190 | -0.811507 | 6.763523e-51 | -8.615850e-47 |
Msa0619320 | Msa0750520 | -0.812897 | 3.364057e-51 | -8.615850e-47 |
Msa0619320 | Msa0751720 | -0.801149 | 1.031653e-48 | -8.615850e-47 |
Msa0619320 | Msa0766860 | -0.807466 | 4.986886e-50 | -8.615850e-47 |
Msa0619320 | Msa0774060 | -0.801395 | 9.186749e-49 | -8.615850e-47 |
Msa0619320 | Msa0831820 | -0.806284 | 8.865328e-50 | -8.615850e-47 |
Msa0619320 | Msa0834200 | 0.802954 | 4.389871e-49 | -8.615850e-47 |
Msa0619320 | Msa0840520 | -0.819985 | 8.711857e-53 | -8.615850e-47 |
Msa0619320 | Msa0882310 | 0.806294 | 8.820188e-50 | -8.615850e-47 |
Msa0619320 | Msa0930950 | 0.831246 | 1.860742e-55 | -8.615850e-47 |
Msa0619320 | Msa0965470 | -0.807269 | 5.489089e-50 | -8.615850e-47 |
Msa0619320 | Msa0978980 | -0.813753 | 2.182061e-51 | -8.615850e-47 |
Msa0619320 | Msa1025200 | -0.804449 | 2.148596e-49 | -8.615850e-47 |
Msa0619320 | Msa1033430 | -0.805796 | 1.122869e-49 | -8.615850e-47 |
Msa0619320 | Msa1041060 | -0.808025 | 3.793248e-50 | -8.615850e-47 |
Msa0619320 | Msa1057620 | 0.825929 | 3.584738e-54 | -8.615850e-47 |
Msa0619320 | Msa1071410 | -0.818759 | 1.657438e-52 | -8.615850e-47 |
Msa0619320 | Msa1073050 | -0.809022 | 2.323808e-50 | -8.615850e-47 |
Msa0619320 | Msa1085570 | 0.868707 | 5.346650e-66 | -8.615850e-47 |
Msa0619320 | Msa1101610 | 0.853962 | 1.688757e-61 | -8.615850e-47 |
Msa0619320 | Msa1127200 | -0.827777 | 1.297128e-54 | -8.615850e-47 |
Msa0619320 | Msa1133440 | 0.808006 | 3.828558e-50 | -8.615850e-47 |
Msa0619320 | Msa1154630 | -0.830183 | 3.389542e-55 | -8.615850e-47 |
Msa0619320 | Msa1165460 | -0.805738 | 1.154798e-49 | -8.615850e-47 |
Msa0619320 | Msa1183910 | -0.817556 | 3.102124e-52 | -8.615850e-47 |
Msa0619320 | Msa1199580 | 0.809710 | 1.654070e-50 | -8.615850e-47 |
Msa0619320 | Msa1206040 | -0.820973 | 5.166950e-53 | -8.615850e-47 |
Msa0619320 | Msa1220580 | -0.813182 | 2.913023e-51 | -8.615850e-47 |
Msa0619320 | Msa1231440 | -0.816075 | 6.665032e-52 | -8.615850e-47 |
Msa0619320 | Msa1273320 | -0.803743 | 3.014127e-49 | -8.615850e-47 |
Msa0619320 | Msa1278000 | -0.807660 | 4.535579e-50 | -8.615850e-47 |
Msa0619320 | Msa1297070 | -0.834873 | 2.330280e-56 | -8.615850e-47 |
Msa0619320 | Msa1308850 | -0.821641 | 3.624214e-53 | -8.615850e-47 |
Msa0619320 | Msa1328630 | 0.808468 | 3.051628e-50 | -8.615850e-47 |
Msa0619320 | Msa1328720 | 0.812359 | 4.412366e-51 | -8.615850e-47 |
Msa0619320 | Msa1328870 | -0.820626 | 6.209054e-53 | -8.615850e-47 |
Msa0619320 | Msa1334560 | -0.813350 | 2.676470e-51 | -8.615850e-47 |
Msa0619320 | Msa1349850 | 0.838361 | 3.011125e-57 | -8.615850e-47 |
Msa0619320 | Msa1352630 | 0.821443 | 4.026805e-53 | -8.615850e-47 |
Msa0619320 | Msa1356450 | -0.801224 | 9.961244e-49 | -8.615850e-47 |
Msa0619320 | Msa1362590 | -0.810330 | 1.215906e-50 | -8.615850e-47 |
Msa0619320 | Msa1366140 | 0.825796 | 3.856136e-54 | -8.615850e-47 |
Msa0619320 | Msa1371800 | -0.835329 | 1.788300e-56 | -8.615850e-47 |
Msa0619320 | Msa1372030 | -0.821441 | 4.031306e-53 | -8.615850e-47 |
Msa0619320 | Msa1376310 | -0.833502 | 5.139548e-56 | -8.615850e-47 |
Msa0619320 | Msa1381800 | -0.816695 | 4.844096e-52 | -8.615850e-47 |
Msa0619320 | Msa1385570 | -0.801769 | 7.701016e-49 | -8.615850e-47 |
Msa0619320 | Msa1387450 | 0.832871 | 7.379815e-56 | -8.615850e-47 |
Msa0619320 | Msa1389820 | -0.819452 | 1.153154e-52 | -8.615850e-47 |
Msa0619320 | Msa1420830 | -0.812646 | 3.818617e-51 | -8.615850e-47 |
Msa0619320 | Msa1428230 | 0.804178 | 2.446594e-49 | -8.615850e-47 |
Msa0619320 | Msa1434710 | 0.853234 | 2.733819e-61 | -8.615850e-47 |
Msa0619320 | Msa1436620 | -0.820554 | 6.451009e-53 | -8.615850e-47 |
Msa0619320 | Msa1438370 | -0.801411 | 9.117864e-49 | -8.615850e-47 |
Msa0619320 | Msa1438510 | -0.818478 | 1.919409e-52 | -8.615850e-47 |
Msa0619320 | Msa1452790 | 0.918116 | 2.315151e-86 | -8.615850e-47 |
Msa0129930 | Msa0619320 | 0.829000 | 6.575401e-55 | -8.615850e-47 |
Msa0134380 | Msa0619320 | 0.814224 | 1.718108e-51 | -8.615850e-47 |
Msa0137010 | Msa0619320 | 0.810867 | 9.308575e-51 | -8.615850e-47 |
Msa0183310 | Msa0619320 | 0.802666 | 5.035092e-49 | -8.615850e-47 |
Msa0186510 | Msa0619320 | 0.811468 | 6.896275e-51 | -8.615850e-47 |
Msa0206370 | Msa0619320 | -0.807029 | 6.170190e-50 | -8.615850e-47 |
Msa0220410 | Msa0619320 | 0.831342 | 1.762223e-55 | -8.615850e-47 |
Msa0221180 | Msa0619320 | -0.823441 | 1.383228e-53 | -8.615850e-47 |
Msa0221460 | Msa0619320 | 0.836928 | 7.018687e-57 | -8.615850e-47 |
Msa0225800 | Msa0619320 | -0.803209 | 3.888115e-49 | -8.615850e-47 |
Msa0229750 | Msa0619320 | 0.872018 | 4.389443e-67 | -8.615850e-47 |
Msa0369040 | Msa0619320 | -0.815670 | 8.209355e-52 | -8.615850e-47 |
Msa0371350 | Msa0619320 | 0.835115 | 2.024664e-56 | -8.615850e-47 |
Msa0387740 | Msa0619320 | 0.854121 | 1.519888e-61 | -8.615850e-47 |
Msa0388250 | Msa0619320 | -0.801250 | 9.837870e-49 | -8.615850e-47 |
Msa0401060 | Msa0619320 | -0.812850 | 3.444603e-51 | -8.615850e-47 |
Msa0403720 | Msa0619320 | 0.837757 | 4.304877e-57 | -8.615850e-47 |
Msa0416210 | Msa0619320 | -0.807671 | 4.510079e-50 | -8.615850e-47 |
Msa0419420 | Msa0619320 | 0.840712 | 7.369657e-58 | -8.615850e-47 |
Msa0433630 | Msa0619320 | -0.804476 | 2.120658e-49 | -8.615850e-47 |
Msa0434090 | Msa0619320 | -0.803541 | 3.318596e-49 | -8.615850e-47 |
Msa0438680 | Msa0619320 | 0.847746 | 9.517823e-60 | -8.615850e-47 |
Msa0463820 | Msa0619320 | 0.822973 | 1.778165e-53 | -8.615850e-47 |
Msa0238960 | Msa0619320 | 0.827352 | 1.640165e-54 | -8.615850e-47 |
Msa0244820 | Msa0619320 | 0.827151 | 1.832714e-54 | -8.615850e-47 |
Msa0260630 | Msa0619320 | -0.807629 | 4.603520e-50 | -8.615850e-47 |
Msa0262750 | Msa0619320 | -0.813059 | 3.100432e-51 | -8.615850e-47 |
Msa0269220 | Msa0619320 | 0.807331 | 5.326223e-50 | -8.615850e-47 |
Msa0276800 | Msa0619320 | 0.842612 | 2.325100e-58 | -8.615850e-47 |
Msa0299540 | Msa0619320 | 0.818007 | 2.453444e-52 | -8.615850e-47 |
Msa0300470 | Msa0619320 | -0.825938 | 3.567495e-54 | -8.615850e-47 |
Msa0300670 | Msa0619320 | 0.830549 | 2.758907e-55 | -8.615850e-47 |
Msa0302310 | Msa0619320 | 0.804226 | 2.391111e-49 | -8.615850e-47 |
Msa0316720 | Msa0619320 | 0.851348 | 9.413112e-61 | -8.615850e-47 |
Msa0336430 | Msa0619320 | -0.817755 | 2.797650e-52 | -8.615850e-47 |
Msa0336460 | Msa0619320 | -0.807754 | 4.331798e-50 | -8.615850e-47 |
Msa0336520 | Msa0619320 | -0.812930 | 3.308959e-51 | -8.615850e-47 |
Msa0337760 | Msa0619320 | 0.831664 | 1.468841e-55 | -8.615850e-47 |
Msa0337970 | Msa0619320 | -0.822221 | 2.659650e-53 | -8.615850e-47 |
Msa0500920 | Msa0619320 | -0.824587 | 7.446901e-54 | -8.615850e-47 |
Msa0506750 | Msa0619320 | -0.801094 | 1.058885e-48 | -8.615850e-47 |
Msa0511600 | Msa0619320 | 0.806311 | 8.747225e-50 | -8.615850e-47 |
Msa0521320 | Msa0619320 | -0.802833 | 4.649758e-49 | -8.615850e-47 |
Msa0527850 | Msa0619320 | -0.807974 | 3.889595e-50 | -8.615850e-47 |
Msa0541880 | Msa0619320 | -0.830491 | 2.851031e-55 | -8.615850e-47 |
Msa0541940 | Msa0619320 | -0.827498 | 1.513358e-54 | -8.615850e-47 |
Msa0568290 | Msa0619320 | 0.882306 | 1.163305e-70 | -8.615850e-47 |
Msa0568460 | Msa0619320 | 0.833934 | 4.008463e-56 | -8.615850e-47 |
Msa0568710 | Msa0619320 | -0.827106 | 1.879356e-54 | -8.615850e-47 |
Msa0571350 | Msa0619320 | -0.824204 | 9.162822e-54 | -8.615850e-47 |
Msa0572270 | Msa0619320 | 0.808375 | 3.194588e-50 | -8.615850e-47 |
Msa0575960 | Msa0619320 | 0.835990 | 1.216376e-56 | -8.615850e-47 |
Msa0582460 | Msa0619320 | -0.808752 | 2.654270e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0619320 | MtrunA17_Chr8g0382991 | 90.955 | 199 | 12 | 2 | 39 | 236 | 1 | 194 | 4.90e-129 | 362 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0619320 | AT2G21970.1 | 55.385 | 195 | 81 | 3 | 39 | 230 | 1 | 192 | 1.27e-61 | 192 |
Find 86 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAACAAACTGATTCTTTAA+TGG | 0.149334 | 4_2:+70417261 | Msa0619320:CDS |
CGCGAATTTAGTATTGAATT+TGG | 0.184846 | 4_2:+70418142 | Msa0619320:three_prime_UTR |
ATGTTTGTGTTCGCGCCTTC+TGG | 0.200953 | 4_2:-70417403 | None:intergenic |
TTCTTTACGGGTCTTGATTA+TGG | 0.222006 | 4_2:-70417482 | None:intergenic |
CTTGCATGTCTTCTTCTTTA+CGG | 0.282945 | 4_2:-70417495 | None:intergenic |
TTGCATGTCTTCTTCTTTAC+GGG | 0.300636 | 4_2:-70417494 | None:intergenic |
CTTAGAACTCTCGATATATT+CGG | 0.302152 | 4_2:-70417554 | None:intergenic |
TTGTTTGGGTGCGGTTACTA+TGG | 0.311981 | 4_2:+70417857 | Msa0619320:CDS |
GAATTCGGTGTTCAGGAAAA+TGG | 0.321728 | 4_2:+70417803 | Msa0619320:CDS |
CCTTCTGGTTCAGTCGGTTT+GGG | 0.324652 | 4_2:-70417388 | None:intergenic |
GCCTTCTGGTTCAGTCGGTT+TGG | 0.330559 | 4_2:-70417389 | None:intergenic |
AGCAGTTGCGGAGAAGAAAT+TGG | 0.350239 | 4_2:-70417117 | None:intergenic |
GAGGCGGGTGGGATTTGTTT+GGG | 0.354432 | 4_2:+70417843 | Msa0619320:CDS |
ACTTGAGAAGTGGTAGTTGT+AGG | 0.364804 | 4_2:-70417222 | None:intergenic |
GGAGGCGGGTGGGATTTGTT+TGG | 0.366265 | 4_2:+70417842 | Msa0619320:CDS |
ATGTAACTGATTTCATTTAG+TGG | 0.375551 | 4_2:+70418286 | Msa0619320:three_prime_UTR |
TGGTTCAGTCGGTTTGGGTT+TGG | 0.403211 | 4_2:-70417383 | None:intergenic |
GAACGAGACGATGATACTTT+TGG | 0.405757 | 4_2:-70417322 | None:intergenic |
GGAGTTGGTGACGGGGAATT+CGG | 0.411121 | 4_2:+70417788 | Msa0619320:CDS |
CTTGAGAAGTGGTAGTTGTA+GGG | 0.421678 | 4_2:-70417221 | None:intergenic |
TTCAGGAAAATGGATATTGC+AGG | 0.423134 | 4_2:+70417813 | Msa0619320:CDS |
TGACGGGGAATTCGGTGTTC+AGG | 0.428337 | 4_2:+70417796 | Msa0619320:CDS |
AATGAACGAACGAACGTTGA+AGG | 0.431669 | 4_2:-70417190 | None:intergenic |
ATCAATTAGCGAATCAATGA+AGG | 0.432023 | 4_2:-70417949 | None:intergenic |
CGGAGATGATTTCGAAATCC+TGG | 0.437279 | 4_2:-70417582 | None:intergenic |
CTATGGCGGCAATGTTTGCT+TGG | 0.440446 | 4_2:+70417874 | Msa0619320:CDS |
GTGACGGTGGAGTTGGTGAC+GGG | 0.448839 | 4_2:+70417780 | Msa0619320:CDS |
TTCATTATTCAAATTTAAAG+TGG | 0.456338 | 4_2:+70418250 | Msa0619320:three_prime_UTR |
CTAATTGATCAAATCGTTGA+CGG | 0.458559 | 4_2:+70417963 | Msa0619320:CDS |
GTCTTGATTATGGCGCCGAC+TGG | 0.478139 | 4_2:-70417472 | None:intergenic |
CGTTCCCGCCCCAGAAAACC+TGG | 0.481238 | 4_2:+70417340 | Msa0619320:CDS |
TGTTACCATGGCGAGGCGGC+CGG | 0.483455 | 4_2:-70417602 | None:intergenic |
CCGCCCCAGAAAACCTGGTC+CGG | 0.484254 | 4_2:+70417345 | Msa0619320:CDS |
AAGAATCAGTTTGTTTGTGA+GGG | 0.497960 | 4_2:-70417255 | None:intergenic |
TTGGTGACGGAAAATTGAAC+CGG | 0.499068 | 4_2:-70417364 | None:intergenic |
AGTCGGTTTGGGTTTGGTGA+CGG | 0.503663 | 4_2:-70417377 | None:intergenic |
GATTATGGCGCCGACTGGAT+CGG | 0.505400 | 4_2:-70417467 | None:intergenic |
AATGGATATTGCAGGGATAA+CGG | 0.508574 | 4_2:+70417821 | Msa0619320:CDS |
AAAGTTTGAGACTTGAGAAG+TGG | 0.510886 | 4_2:-70417232 | None:intergenic |
TTCGGAAAGAGTGGCGAAGA+AGG | 0.517357 | 4_2:-70417536 | None:intergenic |
AAAGAATCAGTTTGTTTGTG+AGG | 0.521674 | 4_2:-70417256 | None:intergenic |
TTCGCGCCTTCTGGTTCAGT+CGG | 0.523523 | 4_2:-70417394 | None:intergenic |
TATTGCAGGGATAACGGAGG+CGG | 0.525078 | 4_2:+70417827 | Msa0619320:CDS |
ACGGAAAATTGAACCGGACC+AGG | 0.525085 | 4_2:-70417358 | None:intergenic |
GCAGATGGTGTTTGCAGCGA+CGG | 0.525390 | 4_2:+70417758 | Msa0619320:intron |
ATGTTCATAGATTGTAAGAT+GGG | 0.530332 | 4_2:+70418187 | Msa0619320:three_prime_UTR |
TGATTCATCATGGTTGGATG+AGG | 0.536622 | 4_2:+70418017 | Msa0619320:exon |
GAACTCTGATTCATCATGGT+TGG | 0.544947 | 4_2:+70418011 | Msa0619320:exon |
TTTGGGTGCGGTTACTATGG+CGG | 0.548728 | 4_2:+70417860 | Msa0619320:CDS |
CTATGCACTCTCAGATCATA+CGG | 0.549836 | 4_2:+70417442 | Msa0619320:CDS |
GGGTGGGATTTGTTTGGGTG+CGG | 0.551031 | 4_2:+70417848 | Msa0619320:CDS |
CAGGGATAACGGAGGCGGGT+GGG | 0.551178 | 4_2:+70417832 | Msa0619320:CDS |
GCAGGGATAACGGAGGCGGG+TGG | 0.556957 | 4_2:+70417831 | Msa0619320:CDS |
CGAGAGTTCTAAGAAAAGCC+AGG | 0.559263 | 4_2:+70417564 | Msa0619320:CDS |
GGTGACGGTGGAGTTGGTGA+CGG | 0.559321 | 4_2:+70417779 | Msa0619320:CDS |
GTGTGACTAACTGCGAGCTC+CGG | 0.567817 | 4_2:+70417296 | Msa0619320:CDS |
ATTGCAGGGATAACGGAGGC+GGG | 0.570947 | 4_2:+70417828 | Msa0619320:CDS |
CATCTCCGGCCGCCTCGCCA+TGG | 0.570988 | 4_2:+70417597 | Msa0619320:CDS |
CATGTTCATAGATTGTAAGA+TGG | 0.573227 | 4_2:+70418186 | Msa0619320:three_prime_UTR |
TGACGGTGGAGTTGGTGACG+GGG | 0.573283 | 4_2:+70417781 | Msa0619320:CDS |
ACAATCTATGAACATGGTCA+AGG | 0.574109 | 4_2:-70418179 | None:intergenic |
CAGGATTTCGAAATCATCTC+CGG | 0.574628 | 4_2:+70417583 | Msa0619320:CDS |
TAATAACGAGTAAGCAGTTG+CGG | 0.582455 | 4_2:-70417129 | None:intergenic |
ATTGTAAGATGGGTGGTTAG+CGG | 0.585816 | 4_2:+70418197 | Msa0619320:three_prime_UTR |
AGCGACGGTGACGGTGGAGT+TGG | 0.587633 | 4_2:+70417773 | Msa0619320:CDS |
CTCGATATATTCGGAAAGAG+TGG | 0.596447 | 4_2:-70417545 | None:intergenic |
TGTGAAGATTCGATCCACTC+TGG | 0.602920 | 4_2:-70417913 | None:intergenic |
CAATCTATGAACATGGTCAA+GGG | 0.603384 | 4_2:-70418178 | None:intergenic |
GGGTGAACTCTGATTCATCA+TGG | 0.604622 | 4_2:+70418007 | Msa0619320:exon |
TTCATAGATTGTAAGATGGG+TGG | 0.607672 | 4_2:+70418190 | Msa0619320:three_prime_UTR |
CATCTTACAATCTATGAACA+TGG | 0.615353 | 4_2:-70418185 | None:intergenic |
GAAGAAGGAGGACACGTCAT+CGG | 0.616933 | 4_2:-70417521 | None:intergenic |
GGAAAGAGTGGCGAAGAAGG+AGG | 0.623174 | 4_2:-70417533 | None:intergenic |
GGTGTTTGCAGCGACGGTGA+CGG | 0.625726 | 4_2:+70417764 | Msa0619320:CDS |
CTCAAGTGCTCGTACCAGAG+TGG | 0.631041 | 4_2:+70417899 | Msa0619320:CDS |
TTGTTCTATGATGATAGCGA+GGG | 0.632266 | 4_2:+70417987 | Msa0619320:CDS |
TTTGTTCTATGATGATAGCG+AGG | 0.632796 | 4_2:+70417986 | Msa0619320:CDS |
TCAGGAAAATGGATATTGCA+GGG | 0.643208 | 4_2:+70417814 | Msa0619320:CDS |
CAAACATCGTTCTACAACCG+CGG | 0.645183 | 4_2:+70417419 | Msa0619320:CDS |
CCCAAACCGACTGAACCAGA+AGG | 0.654325 | 4_2:+70417388 | Msa0619320:CDS |
GTTTGCAGCGACGGTGACGG+TGG | 0.675734 | 4_2:+70417767 | Msa0619320:CDS |
ATTGGATACGTAGCACACAC+AGG | 0.687544 | 4_2:-70417099 | None:intergenic |
AGGTATCAGACAAAACTATG+TGG | 0.693305 | 4_2:-70417079 | None:intergenic |
GGATATTGCAGGGATAACGG+AGG | 0.721943 | 4_2:+70417824 | Msa0619320:CDS |
GATCTGAGAGTGCATAGCCG+CGG | 0.723172 | 4_2:-70417436 | None:intergenic |
TCATACGGTTCCGATCCAGT+CGG | 0.759723 | 4_2:+70417457 | Msa0619320:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTAATACTATGACTTTTTT+TGG | + | chr4_2:70417157-70417176 | Msa0619320:exon | 15.0% |
!! | TTCATTATTCAAATTTAAAG+TGG | + | chr4_2:70418250-70418269 | Msa0619320:three_prime_UTR | 15.0% |
!!! | ATTAATACTATGACTTTTTT+TGG | + | chr4_2:70417157-70417176 | Msa0619320:exon | 15.0% |
!! | TTCATTATTCAAATTTAAAG+TGG | + | chr4_2:70418250-70418269 | Msa0619320:three_prime_UTR | 15.0% |
!! | CATTATTCTCAGTTTATTAT+TGG | + | chr4_2:70417665-70417684 | Msa0619320:intron | 20.0% |
!! | TTCCTCTAATATAGTATATA+TGG | - | chr4_2:70417708-70417727 | None:intergenic | 20.0% |
!! | CATTATTCTCAGTTTATTAT+TGG | + | chr4_2:70417665-70417684 | Msa0619320:intron | 20.0% |
!! | TTCCTCTAATATAGTATATA+TGG | - | chr4_2:70417708-70417727 | None:intergenic | 20.0% |
!! | CAAACAAACTGATTCTTTAA+TGG | + | chr4_2:70417261-70417280 | Msa0619320:CDS | 25.0% |
! | AATATAGTATATATGGACAC+CGG | - | chr4_2:70417701-70417720 | None:intergenic | 25.0% |
! | GTCCATATATACTATATTAG+AGG | + | chr4_2:70417703-70417722 | Msa0619320:intron | 25.0% |
!!! | ATTGTTGCTTTTTATTGATG+TGG | + | chr4_2:70417731-70417750 | Msa0619320:intron | 25.0% |
! | ATGTTCATAGATTGTAAGAT+GGG | + | chr4_2:70418187-70418206 | Msa0619320:three_prime_UTR | 25.0% |
!! | ATGTAACTGATTTCATTTAG+TGG | + | chr4_2:70418286-70418305 | Msa0619320:three_prime_UTR | 25.0% |
!! | CAAACAAACTGATTCTTTAA+TGG | + | chr4_2:70417261-70417280 | Msa0619320:CDS | 25.0% |
! | AATATAGTATATATGGACAC+CGG | - | chr4_2:70417701-70417720 | None:intergenic | 25.0% |
! | GTCCATATATACTATATTAG+AGG | + | chr4_2:70417703-70417722 | Msa0619320:intron | 25.0% |
!!! | ATTGTTGCTTTTTATTGATG+TGG | + | chr4_2:70417731-70417750 | Msa0619320:intron | 25.0% |
! | ATGTTCATAGATTGTAAGAT+GGG | + | chr4_2:70418187-70418206 | Msa0619320:three_prime_UTR | 25.0% |
!! | ATGTAACTGATTTCATTTAG+TGG | + | chr4_2:70418286-70418305 | Msa0619320:three_prime_UTR | 25.0% |
! | AAGAATCAGTTTGTTTGTGA+GGG | - | chr4_2:70417258-70417277 | None:intergenic | 30.0% |
! | AAAGAATCAGTTTGTTTGTG+AGG | - | chr4_2:70417259-70417278 | None:intergenic | 30.0% |
CTTAGAACTCTCGATATATT+CGG | - | chr4_2:70417557-70417576 | None:intergenic | 30.0% | |
ATCAATTAGCGAATCAATGA+AGG | - | chr4_2:70417952-70417971 | None:intergenic | 30.0% | |
CTAATTGATCAAATCGTTGA+CGG | + | chr4_2:70417963-70417982 | Msa0619320:CDS | 30.0% | |
! | CGCGAATTTAGTATTGAATT+TGG | + | chr4_2:70418142-70418161 | Msa0619320:three_prime_UTR | 30.0% |
CATCTTACAATCTATGAACA+TGG | - | chr4_2:70418188-70418207 | None:intergenic | 30.0% | |
CATGTTCATAGATTGTAAGA+TGG | + | chr4_2:70418186-70418205 | Msa0619320:three_prime_UTR | 30.0% | |
! | AAGAATCAGTTTGTTTGTGA+GGG | - | chr4_2:70417258-70417277 | None:intergenic | 30.0% |
! | AAAGAATCAGTTTGTTTGTG+AGG | - | chr4_2:70417259-70417278 | None:intergenic | 30.0% |
CTTAGAACTCTCGATATATT+CGG | - | chr4_2:70417557-70417576 | None:intergenic | 30.0% | |
ATCAATTAGCGAATCAATGA+AGG | - | chr4_2:70417952-70417971 | None:intergenic | 30.0% | |
CTAATTGATCAAATCGTTGA+CGG | + | chr4_2:70417963-70417982 | Msa0619320:CDS | 30.0% | |
! | CGCGAATTTAGTATTGAATT+TGG | + | chr4_2:70418142-70418161 | Msa0619320:three_prime_UTR | 30.0% |
CATCTTACAATCTATGAACA+TGG | - | chr4_2:70418188-70418207 | None:intergenic | 30.0% | |
CATGTTCATAGATTGTAAGA+TGG | + | chr4_2:70418186-70418205 | Msa0619320:three_prime_UTR | 30.0% | |
AGGTATCAGACAAAACTATG+TGG | - | chr4_2:70417082-70417101 | None:intergenic | 35.0% | |
TAATAACGAGTAAGCAGTTG+CGG | - | chr4_2:70417132-70417151 | None:intergenic | 35.0% | |
! | AAAGTTTGAGACTTGAGAAG+TGG | - | chr4_2:70417235-70417254 | None:intergenic | 35.0% |
TTCTTTACGGGTCTTGATTA+TGG | - | chr4_2:70417485-70417504 | None:intergenic | 35.0% | |
TTGCATGTCTTCTTCTTTAC+GGG | - | chr4_2:70417497-70417516 | None:intergenic | 35.0% | |
CTTGCATGTCTTCTTCTTTA+CGG | - | chr4_2:70417498-70417517 | None:intergenic | 35.0% | |
GATCACATGTGTTAGTGTTA+GGG | - | chr4_2:70417631-70417650 | None:intergenic | 35.0% | |
TGATCACATGTGTTAGTGTT+AGG | - | chr4_2:70417632-70417651 | None:intergenic | 35.0% | |
!!! | GTTGCTTTTTATTGATGTGG+TGG | + | chr4_2:70417734-70417753 | Msa0619320:intron | 35.0% |
TTCAGGAAAATGGATATTGC+AGG | + | chr4_2:70417813-70417832 | Msa0619320:CDS | 35.0% | |
TCAGGAAAATGGATATTGCA+GGG | + | chr4_2:70417814-70417833 | Msa0619320:CDS | 35.0% | |
AATGGATATTGCAGGGATAA+CGG | + | chr4_2:70417821-70417840 | Msa0619320:CDS | 35.0% | |
! | TTTGTTCTATGATGATAGCG+AGG | + | chr4_2:70417986-70418005 | Msa0619320:CDS | 35.0% |
! | TTGTTCTATGATGATAGCGA+GGG | + | chr4_2:70417987-70418006 | Msa0619320:CDS | 35.0% |
CAATCTATGAACATGGTCAA+GGG | - | chr4_2:70418181-70418200 | None:intergenic | 35.0% | |
ACAATCTATGAACATGGTCA+AGG | - | chr4_2:70418182-70418201 | None:intergenic | 35.0% | |
TTCATAGATTGTAAGATGGG+TGG | + | chr4_2:70418190-70418209 | Msa0619320:three_prime_UTR | 35.0% | |
AGGTATCAGACAAAACTATG+TGG | - | chr4_2:70417082-70417101 | None:intergenic | 35.0% | |
TAATAACGAGTAAGCAGTTG+CGG | - | chr4_2:70417132-70417151 | None:intergenic | 35.0% | |
! | AAAGTTTGAGACTTGAGAAG+TGG | - | chr4_2:70417235-70417254 | None:intergenic | 35.0% |
TTCTTTACGGGTCTTGATTA+TGG | - | chr4_2:70417485-70417504 | None:intergenic | 35.0% | |
TTGCATGTCTTCTTCTTTAC+GGG | - | chr4_2:70417497-70417516 | None:intergenic | 35.0% | |
CTTGCATGTCTTCTTCTTTA+CGG | - | chr4_2:70417498-70417517 | None:intergenic | 35.0% | |
GATCACATGTGTTAGTGTTA+GGG | - | chr4_2:70417631-70417650 | None:intergenic | 35.0% | |
TGATCACATGTGTTAGTGTT+AGG | - | chr4_2:70417632-70417651 | None:intergenic | 35.0% | |
!!! | GTTGCTTTTTATTGATGTGG+TGG | + | chr4_2:70417734-70417753 | Msa0619320:intron | 35.0% |
TTCAGGAAAATGGATATTGC+AGG | + | chr4_2:70417813-70417832 | Msa0619320:CDS | 35.0% | |
TCAGGAAAATGGATATTGCA+GGG | + | chr4_2:70417814-70417833 | Msa0619320:CDS | 35.0% | |
AATGGATATTGCAGGGATAA+CGG | + | chr4_2:70417821-70417840 | Msa0619320:CDS | 35.0% | |
! | TTTGTTCTATGATGATAGCG+AGG | + | chr4_2:70417986-70418005 | Msa0619320:CDS | 35.0% |
! | TTGTTCTATGATGATAGCGA+GGG | + | chr4_2:70417987-70418006 | Msa0619320:CDS | 35.0% |
CAATCTATGAACATGGTCAA+GGG | - | chr4_2:70418181-70418200 | None:intergenic | 35.0% | |
ACAATCTATGAACATGGTCA+AGG | - | chr4_2:70418182-70418201 | None:intergenic | 35.0% | |
TTCATAGATTGTAAGATGGG+TGG | + | chr4_2:70418190-70418209 | Msa0619320:three_prime_UTR | 35.0% | |
AATGAACGAACGAACGTTGA+AGG | - | chr4_2:70417193-70417212 | None:intergenic | 40.0% | |
CTTGAGAAGTGGTAGTTGTA+GGG | - | chr4_2:70417224-70417243 | None:intergenic | 40.0% | |
ACTTGAGAAGTGGTAGTTGT+AGG | - | chr4_2:70417225-70417244 | None:intergenic | 40.0% | |
! | GAACGAGACGATGATACTTT+TGG | - | chr4_2:70417325-70417344 | None:intergenic | 40.0% |
!! | TTGGTGACGGAAAATTGAAC+CGG | - | chr4_2:70417367-70417386 | None:intergenic | 40.0% |
CTATGCACTCTCAGATCATA+CGG | + | chr4_2:70417442-70417461 | Msa0619320:CDS | 40.0% | |
CTCGATATATTCGGAAAGAG+TGG | - | chr4_2:70417548-70417567 | None:intergenic | 40.0% | |
CAGGATTTCGAAATCATCTC+CGG | + | chr4_2:70417583-70417602 | Msa0619320:CDS | 40.0% | |
!!! | GTGTTAGGGTTTTGTTACCA+TGG | - | chr4_2:70417617-70417636 | None:intergenic | 40.0% |
!! | TATTATTGGTGTCAACGTGC+CGG | + | chr4_2:70417679-70417698 | Msa0619320:intron | 40.0% |
!! | GAATTCGGTGTTCAGGAAAA+TGG | + | chr4_2:70417803-70417822 | Msa0619320:CDS | 40.0% |
GAACTCTGATTCATCATGGT+TGG | + | chr4_2:70418011-70418030 | Msa0619320:exon | 40.0% | |
TGATTCATCATGGTTGGATG+AGG | + | chr4_2:70418017-70418036 | Msa0619320:exon | 40.0% | |
ATTGTAAGATGGGTGGTTAG+CGG | + | chr4_2:70418197-70418216 | Msa0619320:three_prime_UTR | 40.0% | |
AATGAACGAACGAACGTTGA+AGG | - | chr4_2:70417193-70417212 | None:intergenic | 40.0% | |
CTTGAGAAGTGGTAGTTGTA+GGG | - | chr4_2:70417224-70417243 | None:intergenic | 40.0% | |
ACTTGAGAAGTGGTAGTTGT+AGG | - | chr4_2:70417225-70417244 | None:intergenic | 40.0% | |
! | GAACGAGACGATGATACTTT+TGG | - | chr4_2:70417325-70417344 | None:intergenic | 40.0% |
!! | TTGGTGACGGAAAATTGAAC+CGG | - | chr4_2:70417367-70417386 | None:intergenic | 40.0% |
CTATGCACTCTCAGATCATA+CGG | + | chr4_2:70417442-70417461 | Msa0619320:CDS | 40.0% | |
CTCGATATATTCGGAAAGAG+TGG | - | chr4_2:70417548-70417567 | None:intergenic | 40.0% | |
CAGGATTTCGAAATCATCTC+CGG | + | chr4_2:70417583-70417602 | Msa0619320:CDS | 40.0% | |
!!! | GTGTTAGGGTTTTGTTACCA+TGG | - | chr4_2:70417617-70417636 | None:intergenic | 40.0% |
!! | TATTATTGGTGTCAACGTGC+CGG | + | chr4_2:70417679-70417698 | Msa0619320:intron | 40.0% |
!! | GAATTCGGTGTTCAGGAAAA+TGG | + | chr4_2:70417803-70417822 | Msa0619320:CDS | 40.0% |
GAACTCTGATTCATCATGGT+TGG | + | chr4_2:70418011-70418030 | Msa0619320:exon | 40.0% | |
TGATTCATCATGGTTGGATG+AGG | + | chr4_2:70418017-70418036 | Msa0619320:exon | 40.0% | |
ATTGTAAGATGGGTGGTTAG+CGG | + | chr4_2:70418197-70418216 | Msa0619320:three_prime_UTR | 40.0% | |
ATTGGATACGTAGCACACAC+AGG | - | chr4_2:70417102-70417121 | None:intergenic | 45.0% | |
AGCAGTTGCGGAGAAGAAAT+TGG | - | chr4_2:70417120-70417139 | None:intergenic | 45.0% | |
!! | ACGATGATACTTTTGGTGGC+CGG | - | chr4_2:70417318-70417337 | None:intergenic | 45.0% |
! | CGAGACGATGATACTTTTGG+TGG | - | chr4_2:70417322-70417341 | None:intergenic | 45.0% |
CAAACATCGTTCTACAACCG+CGG | + | chr4_2:70417419-70417438 | Msa0619320:CDS | 45.0% | |
!! | CGAGAGTTCTAAGAAAAGCC+AGG | + | chr4_2:70417564-70417583 | Msa0619320:CDS | 45.0% |
CGGAGATGATTTCGAAATCC+TGG | - | chr4_2:70417585-70417604 | None:intergenic | 45.0% | |
! | TATTGATGTGGTGGTGCAGA+TGG | + | chr4_2:70417743-70417762 | Msa0619320:intron | 45.0% |
TTGTTTGGGTGCGGTTACTA+TGG | + | chr4_2:70417857-70417876 | Msa0619320:CDS | 45.0% | |
TGTGAAGATTCGATCCACTC+TGG | - | chr4_2:70417916-70417935 | None:intergenic | 45.0% | |
GGGTGAACTCTGATTCATCA+TGG | + | chr4_2:70418007-70418026 | Msa0619320:exon | 45.0% | |
ATTGGATACGTAGCACACAC+AGG | - | chr4_2:70417102-70417121 | None:intergenic | 45.0% | |
AGCAGTTGCGGAGAAGAAAT+TGG | - | chr4_2:70417120-70417139 | None:intergenic | 45.0% | |
!! | ACGATGATACTTTTGGTGGC+CGG | - | chr4_2:70417318-70417337 | None:intergenic | 45.0% |
! | CGAGACGATGATACTTTTGG+TGG | - | chr4_2:70417322-70417341 | None:intergenic | 45.0% |
CAAACATCGTTCTACAACCG+CGG | + | chr4_2:70417419-70417438 | Msa0619320:CDS | 45.0% | |
!! | CGAGAGTTCTAAGAAAAGCC+AGG | + | chr4_2:70417564-70417583 | Msa0619320:CDS | 45.0% |
CGGAGATGATTTCGAAATCC+TGG | - | chr4_2:70417585-70417604 | None:intergenic | 45.0% | |
! | TATTGATGTGGTGGTGCAGA+TGG | + | chr4_2:70417743-70417762 | Msa0619320:intron | 45.0% |
TTGTTTGGGTGCGGTTACTA+TGG | + | chr4_2:70417857-70417876 | Msa0619320:CDS | 45.0% | |
TGTGAAGATTCGATCCACTC+TGG | - | chr4_2:70417916-70417935 | None:intergenic | 45.0% | |
GGGTGAACTCTGATTCATCA+TGG | + | chr4_2:70418007-70418026 | Msa0619320:exon | 45.0% | |
! | TGAACCGGACCAGGTTTTCT+GGG | - | chr4_2:70417352-70417371 | None:intergenic | 50.0% |
! | TTGAACCGGACCAGGTTTTC+TGG | - | chr4_2:70417353-70417372 | None:intergenic | 50.0% |
ACGGAAAATTGAACCGGACC+AGG | - | chr4_2:70417361-70417380 | None:intergenic | 50.0% | |
!! | AGTCGGTTTGGGTTTGGTGA+CGG | - | chr4_2:70417380-70417399 | None:intergenic | 50.0% |
!! | TGGTTCAGTCGGTTTGGGTT+TGG | - | chr4_2:70417386-70417405 | None:intergenic | 50.0% |
!! | CCTTCTGGTTCAGTCGGTTT+GGG | - | chr4_2:70417391-70417410 | None:intergenic | 50.0% |
ATGTTTGTGTTCGCGCCTTC+TGG | - | chr4_2:70417406-70417425 | None:intergenic | 50.0% | |
TCATACGGTTCCGATCCAGT+CGG | + | chr4_2:70417457-70417476 | Msa0619320:CDS | 50.0% | |
GAAGAAGGAGGACACGTCAT+CGG | - | chr4_2:70417524-70417543 | None:intergenic | 50.0% | |
TTCGGAAAGAGTGGCGAAGA+AGG | - | chr4_2:70417539-70417558 | None:intergenic | 50.0% | |
!! | GTTTTGTTACCATGGCGAGG+CGG | - | chr4_2:70417609-70417628 | None:intergenic | 50.0% |
!!! | AGGGTTTTGTTACCATGGCG+AGG | - | chr4_2:70417612-70417631 | None:intergenic | 50.0% |
! | GGATATTGCAGGGATAACGG+AGG | + | chr4_2:70417824-70417843 | Msa0619320:CDS | 50.0% |
!! | TATTGCAGGGATAACGGAGG+CGG | + | chr4_2:70417827-70417846 | Msa0619320:CDS | 50.0% |
TTTGGGTGCGGTTACTATGG+CGG | + | chr4_2:70417860-70417879 | Msa0619320:CDS | 50.0% | |
CTATGGCGGCAATGTTTGCT+TGG | + | chr4_2:70417874-70417893 | Msa0619320:CDS | 50.0% | |
! | TGAACCGGACCAGGTTTTCT+GGG | - | chr4_2:70417352-70417371 | None:intergenic | 50.0% |
! | TTGAACCGGACCAGGTTTTC+TGG | - | chr4_2:70417353-70417372 | None:intergenic | 50.0% |
ACGGAAAATTGAACCGGACC+AGG | - | chr4_2:70417361-70417380 | None:intergenic | 50.0% | |
!! | AGTCGGTTTGGGTTTGGTGA+CGG | - | chr4_2:70417380-70417399 | None:intergenic | 50.0% |
!! | TGGTTCAGTCGGTTTGGGTT+TGG | - | chr4_2:70417386-70417405 | None:intergenic | 50.0% |
!! | CCTTCTGGTTCAGTCGGTTT+GGG | - | chr4_2:70417391-70417410 | None:intergenic | 50.0% |
ATGTTTGTGTTCGCGCCTTC+TGG | - | chr4_2:70417406-70417425 | None:intergenic | 50.0% | |
TCATACGGTTCCGATCCAGT+CGG | + | chr4_2:70417457-70417476 | Msa0619320:CDS | 50.0% | |
GAAGAAGGAGGACACGTCAT+CGG | - | chr4_2:70417524-70417543 | None:intergenic | 50.0% | |
TTCGGAAAGAGTGGCGAAGA+AGG | - | chr4_2:70417539-70417558 | None:intergenic | 50.0% | |
!! | GTTTTGTTACCATGGCGAGG+CGG | - | chr4_2:70417609-70417628 | None:intergenic | 50.0% |
!!! | AGGGTTTTGTTACCATGGCG+AGG | - | chr4_2:70417612-70417631 | None:intergenic | 50.0% |
! | GGATATTGCAGGGATAACGG+AGG | + | chr4_2:70417824-70417843 | Msa0619320:CDS | 50.0% |
!! | TATTGCAGGGATAACGGAGG+CGG | + | chr4_2:70417827-70417846 | Msa0619320:CDS | 50.0% |
TTTGGGTGCGGTTACTATGG+CGG | + | chr4_2:70417860-70417879 | Msa0619320:CDS | 50.0% | |
CTATGGCGGCAATGTTTGCT+TGG | + | chr4_2:70417874-70417893 | Msa0619320:CDS | 50.0% | |
GTGTGACTAACTGCGAGCTC+CGG | + | chr4_2:70417296-70417315 | Msa0619320:CDS | 55.0% | |
! | GAACCGGACCAGGTTTTCTG+GGG | - | chr4_2:70417351-70417370 | None:intergenic | 55.0% |
CCCAAACCGACTGAACCAGA+AGG | + | chr4_2:70417388-70417407 | Msa0619320:CDS | 55.0% | |
!! | GCCTTCTGGTTCAGTCGGTT+TGG | - | chr4_2:70417392-70417411 | None:intergenic | 55.0% |
!! | TTCGCGCCTTCTGGTTCAGT+CGG | - | chr4_2:70417397-70417416 | None:intergenic | 55.0% |
! | GATCTGAGAGTGCATAGCCG+CGG | - | chr4_2:70417439-70417458 | None:intergenic | 55.0% |
!! | GATTATGGCGCCGACTGGAT+CGG | - | chr4_2:70417470-70417489 | None:intergenic | 55.0% |
!! | GTCTTGATTATGGCGCCGAC+TGG | - | chr4_2:70417475-70417494 | None:intergenic | 55.0% |
GGAAAGAGTGGCGAAGAAGG+AGG | - | chr4_2:70417536-70417555 | None:intergenic | 55.0% | |
GCAGATGGTGTTTGCAGCGA+CGG | + | chr4_2:70417758-70417777 | Msa0619320:intron | 55.0% | |
!! | GGAGTTGGTGACGGGGAATT+CGG | + | chr4_2:70417788-70417807 | Msa0619320:CDS | 55.0% |
!! | TGACGGGGAATTCGGTGTTC+AGG | + | chr4_2:70417796-70417815 | Msa0619320:CDS | 55.0% |
!! | ATTGCAGGGATAACGGAGGC+GGG | + | chr4_2:70417828-70417847 | Msa0619320:CDS | 55.0% |
! | GAGGCGGGTGGGATTTGTTT+GGG | + | chr4_2:70417843-70417862 | Msa0619320:CDS | 55.0% |
! | GGGTGGGATTTGTTTGGGTG+CGG | + | chr4_2:70417848-70417867 | Msa0619320:CDS | 55.0% |
CTCAAGTGCTCGTACCAGAG+TGG | + | chr4_2:70417899-70417918 | Msa0619320:CDS | 55.0% | |
GTGTGACTAACTGCGAGCTC+CGG | + | chr4_2:70417296-70417315 | Msa0619320:CDS | 55.0% | |
! | GAACCGGACCAGGTTTTCTG+GGG | - | chr4_2:70417351-70417370 | None:intergenic | 55.0% |
CCCAAACCGACTGAACCAGA+AGG | + | chr4_2:70417388-70417407 | Msa0619320:CDS | 55.0% | |
!! | GCCTTCTGGTTCAGTCGGTT+TGG | - | chr4_2:70417392-70417411 | None:intergenic | 55.0% |
!! | TTCGCGCCTTCTGGTTCAGT+CGG | - | chr4_2:70417397-70417416 | None:intergenic | 55.0% |
! | GATCTGAGAGTGCATAGCCG+CGG | - | chr4_2:70417439-70417458 | None:intergenic | 55.0% |
!! | GATTATGGCGCCGACTGGAT+CGG | - | chr4_2:70417470-70417489 | None:intergenic | 55.0% |
!! | GTCTTGATTATGGCGCCGAC+TGG | - | chr4_2:70417475-70417494 | None:intergenic | 55.0% |
GGAAAGAGTGGCGAAGAAGG+AGG | - | chr4_2:70417536-70417555 | None:intergenic | 55.0% | |
GCAGATGGTGTTTGCAGCGA+CGG | + | chr4_2:70417758-70417777 | Msa0619320:intron | 55.0% | |
!! | GGAGTTGGTGACGGGGAATT+CGG | + | chr4_2:70417788-70417807 | Msa0619320:CDS | 55.0% |
!! | TGACGGGGAATTCGGTGTTC+AGG | + | chr4_2:70417796-70417815 | Msa0619320:CDS | 55.0% |
!! | ATTGCAGGGATAACGGAGGC+GGG | + | chr4_2:70417828-70417847 | Msa0619320:CDS | 55.0% |
! | GAGGCGGGTGGGATTTGTTT+GGG | + | chr4_2:70417843-70417862 | Msa0619320:CDS | 55.0% |
! | GGGTGGGATTTGTTTGGGTG+CGG | + | chr4_2:70417848-70417867 | Msa0619320:CDS | 55.0% |
CTCAAGTGCTCGTACCAGAG+TGG | + | chr4_2:70417899-70417918 | Msa0619320:CDS | 55.0% | |
GGTGTTTGCAGCGACGGTGA+CGG | + | chr4_2:70417764-70417783 | Msa0619320:CDS | 60.0% | |
!! | GGTGACGGTGGAGTTGGTGA+CGG | + | chr4_2:70417779-70417798 | Msa0619320:CDS | 60.0% |
!! | GTGACGGTGGAGTTGGTGAC+GGG | + | chr4_2:70417780-70417799 | Msa0619320:CDS | 60.0% |
!! | TGACGGTGGAGTTGGTGACG+GGG | + | chr4_2:70417781-70417800 | Msa0619320:CDS | 60.0% |
! | GGAGGCGGGTGGGATTTGTT+TGG | + | chr4_2:70417842-70417861 | Msa0619320:CDS | 60.0% |
GGTGTTTGCAGCGACGGTGA+CGG | + | chr4_2:70417764-70417783 | Msa0619320:CDS | 60.0% | |
!! | GGTGACGGTGGAGTTGGTGA+CGG | + | chr4_2:70417779-70417798 | Msa0619320:CDS | 60.0% |
!! | GTGACGGTGGAGTTGGTGAC+GGG | + | chr4_2:70417780-70417799 | Msa0619320:CDS | 60.0% |
!! | TGACGGTGGAGTTGGTGACG+GGG | + | chr4_2:70417781-70417800 | Msa0619320:CDS | 60.0% |
! | GGAGGCGGGTGGGATTTGTT+TGG | + | chr4_2:70417842-70417861 | Msa0619320:CDS | 60.0% |
CGTTCCCGCCCCAGAAAACC+TGG | + | chr4_2:70417340-70417359 | Msa0619320:CDS | 65.0% | |
!!! | CGGACCAGGTTTTCTGGGGC+GGG | - | chr4_2:70417347-70417366 | None:intergenic | 65.0% |
!! | CCGGACCAGGTTTTCTGGGG+CGG | - | chr4_2:70417348-70417367 | None:intergenic | 65.0% |
CCGCCCCAGAAAACCTGGTC+CGG | + | chr4_2:70417345-70417364 | Msa0619320:CDS | 65.0% | |
TGTTACCATGGCGAGGCGGC+CGG | - | chr4_2:70417605-70417624 | None:intergenic | 65.0% | |
! | GTTTGCAGCGACGGTGACGG+TGG | + | chr4_2:70417767-70417786 | Msa0619320:CDS | 65.0% |
! | AGCGACGGTGACGGTGGAGT+TGG | + | chr4_2:70417773-70417792 | Msa0619320:CDS | 65.0% |
!! | CAGGGATAACGGAGGCGGGT+GGG | + | chr4_2:70417832-70417851 | Msa0619320:CDS | 65.0% |
CGTTCCCGCCCCAGAAAACC+TGG | + | chr4_2:70417340-70417359 | Msa0619320:CDS | 65.0% | |
!!! | CGGACCAGGTTTTCTGGGGC+GGG | - | chr4_2:70417347-70417366 | None:intergenic | 65.0% |
!! | CCGGACCAGGTTTTCTGGGG+CGG | - | chr4_2:70417348-70417367 | None:intergenic | 65.0% |
CCGCCCCAGAAAACCTGGTC+CGG | + | chr4_2:70417345-70417364 | Msa0619320:CDS | 65.0% | |
TGTTACCATGGCGAGGCGGC+CGG | - | chr4_2:70417605-70417624 | None:intergenic | 65.0% | |
! | GTTTGCAGCGACGGTGACGG+TGG | + | chr4_2:70417767-70417786 | Msa0619320:CDS | 65.0% |
! | AGCGACGGTGACGGTGGAGT+TGG | + | chr4_2:70417773-70417792 | Msa0619320:CDS | 65.0% |
!! | CAGGGATAACGGAGGCGGGT+GGG | + | chr4_2:70417832-70417851 | Msa0619320:CDS | 65.0% |
!! | GCAGGGATAACGGAGGCGGG+TGG | + | chr4_2:70417831-70417850 | Msa0619320:CDS | 70.0% |
!! | GCAGGGATAACGGAGGCGGG+TGG | + | chr4_2:70417831-70417850 | Msa0619320:CDS | 70.0% |
CATCTCCGGCCGCCTCGCCA+TGG | + | chr4_2:70417597-70417616 | Msa0619320:CDS | 75.0% | |
CATCTCCGGCCGCCTCGCCA+TGG | + | chr4_2:70417597-70417616 | Msa0619320:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 70417073 | 70418335 | 70417073 | ID=Msa0619320;Name=Msa0619320 |
chr4_2 | mRNA | 70417073 | 70418335 | 70417073 | ID=Msa0619320-mRNA-1;Parent=Msa0619320;Name=Msa0619320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=93|1|1|1|1|1|2|316|236 |
chr4_2 | exon | 70417073 | 70417618 | 70417073 | ID=Msa0619320-mRNA-1:exon:20520;Parent=Msa0619320-mRNA-1 |
chr4_2 | exon | 70417762 | 70418335 | 70417762 | ID=Msa0619320-mRNA-1:exon:20521;Parent=Msa0619320-mRNA-1 |
chr4_2 | five_prime_UTR | 70417073 | 70417165 | 70417073 | ID=Msa0619320-mRNA-1:five_prime_utr;Parent=Msa0619320-mRNA-1 |
chr4_2 | CDS | 70417166 | 70417618 | 70417166 | ID=Msa0619320-mRNA-1:cds;Parent=Msa0619320-mRNA-1 |
chr4_2 | CDS | 70417762 | 70418019 | 70417762 | ID=Msa0619320-mRNA-1:cds;Parent=Msa0619320-mRNA-1 |
chr4_2 | three_prime_UTR | 70418020 | 70418335 | 70418020 | ID=Msa0619320-mRNA-1:three_prime_utr;Parent=Msa0619320-mRNA-1 |
Gene Sequence |
Protein sequence |